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Dis.", "date": "2020", "authors": "Harcourt Jennifer, Tamin Azaibi, Lu Xiaoyan, Kamili Shifaq, Sakthivel Senthil K, Murray Janna, Queen Krista, Tao Ying, Paden Clinton R, Zhang Jing, Li Yan, Uehara Anna, Wang Haibin, Goldsmith Cynthia, Bullock Hannah A, Wang Lijuan, Whitaker Brett, Lynch Brian, Gautam Rashi, Schindewolf Craig, Lokugamage Kumari G, Scharton Dionna, Plante Jessica A, Mirchandani Divya, Widen Steven G, Narayanan Krishna, Makino Shinji, Ksiazek Thomas G, Plante Kenneth S, Weaver Scott C, Lindstrom Stephen, Tong Suxiang, Menachery Vineet D, Thornburg Natalie J", "reference": { "type": "PubMed", "id": "32160149", "url": "https://pubmed.ncbi.nlm.nih.gov/32160149" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A663DJA2-1", "protein_name": "Putative ORF10 protein", "gene_name": "ORF10", "tax_name": "2019-nCoV" } ], "species": [ { "name": "Severe acute respiratory syndrome coronavirus 2", "taxid": 2697049, "evidence": [ { "database": "UniProtKB", "id": "A0A663DJA2", "url": "https://www.uniprot.org/uniprotkb/A0A663DJA2" } ], "common_name": "2019-nCoV", "glygen_name": "SARS-CoV-2", "reference_species": "Severe acute respiratory syndrome coronavirus 2 [2697049]" } ], "record_id": "pubmed.32160149", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Molecular characterization of SARS-CoV-2 from the first case of COVID-19 in Italy.", "journal": "Clin. Microbiol. Infect.", "date": "2020", "authors": "Capobianchi M R, Rueca M, Messina F, Giombini E, Carletti F, Colavita F, Castilletti C, Lalle E, Bordi L, Vairo F, Nicastri E, Ippolito G, Gruber C E M, Bartolini B", "reference": { "type": "PubMed", "id": "32229288", "url": "https://pubmed.ncbi.nlm.nih.gov/32229288" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A663DJA2-1", "protein_name": "Putative ORF10 protein", "gene_name": "ORF10", "tax_name": "2019-nCoV" } ], "species": [ { "name": "Severe acute respiratory syndrome coronavirus 2", "taxid": 2697049, "evidence": [ { "database": "UniProtKB", "id": "A0A663DJA2", "url": "https://www.uniprot.org/uniprotkb/A0A663DJA2" } ], "common_name": "2019-nCoV", "glygen_name": "SARS-CoV-2", "reference_species": "Severe acute respiratory syndrome coronavirus 2 [2697049]" } ], "record_id": "pubmed.32229288", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Possible Bat Origin of Severe Acute Respiratory Syndrome Coronavirus 2.", "journal": "Emerg. Infect. Dis.", "date": "2020", "authors": "Lau Susanna K P, Luk Hayes K H, Wong Antonio C P, Li Kenneth S M, Zhu Longchao, He Zirong, Fung Joshua, Chan Tony T Y, Fung Kitty S C, Woo Patrick C Y", "reference": { "type": "PubMed", "id": "32315281", "url": "https://pubmed.ncbi.nlm.nih.gov/32315281" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A663DJA2-1", "protein_name": "Putative ORF10 protein", "gene_name": "ORF10", "tax_name": "2019-nCoV" } ], "species": [ { "name": "Severe acute respiratory syndrome coronavirus 2", "taxid": 2697049, "evidence": [ { "database": "UniProtKB", "id": "A0A663DJA2", "url": "https://www.uniprot.org/uniprotkb/A0A663DJA2" } ], "common_name": "2019-nCoV", "glygen_name": "SARS-CoV-2", "reference_species": "Severe acute respiratory syndrome coronavirus 2 [2697049]" } ], "record_id": "pubmed.32315281", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Isolation of infectious SARS-CoV-2 from urine of a COVID-19 patient.", "journal": "Emerg. Microbes Infect.", "date": "2020", "authors": "Sun Jing, Zhu Airu, Li Heying, Zheng Kui, Zhuang Zhen, Chen Zhao, Shi Yongxia, Zhang Zhaoyong, Chen Si-Bei, Liu Xuesong, Dai Jun, Li Xiaobo, Huang Shuxiang, Huang Xiaofang, Luo Ling, Wen Liyan, Zhuo Jianfen, Li Yuming, Wang Yanqun, Zhang Lu, Zhang Yanjun, Li Fang, Feng Liqiang, Chen Xinwen, Zhong Nanshan, Yang Zifeng, Huang Jicheng, Zhao Jincun, Li Yi-Min", "reference": { "type": "PubMed", "id": "32342724", "url": "https://pubmed.ncbi.nlm.nih.gov/32342724" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A663DJA2-1", "protein_name": "Putative ORF10 protein", "gene_name": "ORF10", "tax_name": "2019-nCoV" } ], "species": [ { "name": "Severe acute respiratory syndrome coronavirus 2", "taxid": 2697049, "evidence": [ { "database": "UniProtKB", "id": "A0A663DJA2", "url": "https://www.uniprot.org/uniprotkb/A0A663DJA2" } ], "common_name": "2019-nCoV", "glygen_name": "SARS-CoV-2", "reference_species": "Severe acute respiratory syndrome coronavirus 2 [2697049]" } ], "record_id": "pubmed.32342724", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "An 81-Nucleotide Deletion in SARS-CoV-2 ORF7a Identified from Sentinel Surveillance in Arizona (January to March 2020).", "journal": "J. Virol.", "date": "2020", "authors": "Holland LaRinda A, Kaelin Emily A, Maqsood Rabia, Estifanos Bereket, Wu Lily I, Varsani Arvind, Halden Rolf U, Hogue Brenda G, Scotch Matthew, Lim Efrem S", "reference": { "type": "PubMed", "id": "32357959", "url": "https://pubmed.ncbi.nlm.nih.gov/32357959" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A663DJA2-1", "protein_name": "Putative ORF10 protein", "gene_name": "ORF10", "tax_name": "2019-nCoV" } ], "species": [ { "name": "Severe acute respiratory syndrome coronavirus 2", "taxid": 2697049, "evidence": [ { "database": "UniProtKB", "id": "A0A663DJA2", "url": "https://www.uniprot.org/uniprotkb/A0A663DJA2" } ], "common_name": "2019-nCoV", "glygen_name": "SARS-CoV-2", "reference_species": "Severe acute respiratory syndrome coronavirus 2 [2697049]" } ], "record_id": "pubmed.32357959", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Nosocomial outbreak of COVID-19 pneumonia in Wuhan, China.", "journal": "Eur. Respir. J.", "date": "2020", "authors": "Wang Xiaorong, Zhou Qiong, He Yukun, Liu Lingbo, Ma Xinqian, Wei Xiaoshan, Jiang Nanchuan, Liang Limei, Zheng Yali, Ma Ling, Xu Yu, Yang Dong, Zhang Jianchu, Yang Bohan, Jiang Ning, Deng Tao, Zhai Bingbing, Gao Yang, Liu Wenxuan, Bai Xinghua, Pan Tao, Wang Guoqing, Chang Yujun, Zhang Zhi, Shi Huanzhong, Ma Wan-Li, Gao Zhancheng", "reference": { "type": "PubMed", "id": "32366488", "url": "https://pubmed.ncbi.nlm.nih.gov/32366488" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A663DJA2-1", "protein_name": "Putative ORF10 protein", "gene_name": "ORF10", "tax_name": "2019-nCoV" } ], "species": [ { "name": "Severe acute respiratory syndrome coronavirus 2", "taxid": 2697049, "evidence": [ { "database": "UniProtKB", "id": "A0A663DJA2", "url": "https://www.uniprot.org/uniprotkb/A0A663DJA2" } ], "common_name": "2019-nCoV", "glygen_name": "SARS-CoV-2", "reference_species": "Severe acute respiratory syndrome coronavirus 2 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Zhu Ling, Wang Nan, Lv Zhe, Gao Hong, Ge Xiaoqin, Kan Biao, Hu Yaling, Liu Jiangning, Cai Fang, Jiang Deyu, Yin Yanhui, Qin Chengfeng, Li Jing, Gong Xuejie, Lou Xiuyu, Shi Wen, Wu Dongdong, Zhang Hengming, Zhu Lang, Deng Wei, Li Yurong, Lu Jinxing, Li Changgui, Wang Xiangxi, Yin Weidong, Zhang Yanjun, Qin Chuan", "reference": { "type": "PubMed", "id": "32376603", "url": "https://pubmed.ncbi.nlm.nih.gov/32376603" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A663DJA2-1", "protein_name": "Putative ORF10 protein", "gene_name": "ORF10", "tax_name": "2019-nCoV" } ], "species": [ { "name": "Severe acute respiratory syndrome coronavirus 2", "taxid": 2697049, "evidence": [ { "database": "UniProtKB", "id": "A0A663DJA2", "url": "https://www.uniprot.org/uniprotkb/A0A663DJA2" } ], "common_name": "2019-nCoV", "glygen_name": "SARS-CoV-2", "reference_species": "Severe acute respiratory syndrome coronavirus 2 [2697049]" } ], "record_id": "pubmed.32376603", 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K W, Perera Ranawaka A P M, Poon Leo L M, Peiris Malik", "reference": { "type": "PubMed", "id": "32408337", "url": "https://pubmed.ncbi.nlm.nih.gov/32408337" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A663DJA2-1", "protein_name": "Putative ORF10 protein", "gene_name": "ORF10", "tax_name": "2019-nCoV" } ], "species": [ { "name": "Severe acute respiratory syndrome coronavirus 2", "taxid": 2697049, "evidence": [ { "database": "UniProtKB", "id": "A0A663DJA2", "url": "https://www.uniprot.org/uniprotkb/A0A663DJA2" } ], "common_name": "2019-nCoV", "glygen_name": "SARS-CoV-2", "reference_species": "Severe acute respiratory syndrome coronavirus 2 [2697049]" } ], "record_id": "pubmed.32408337", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", 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Dis.", "date": "2020", "authors": "Gu Wei, Deng Xianding, Reyes Kevin, Hsu Elaine, Wang Candace, Sotomayor-Gonzalez Alicia, Federman Scot, Bushnell Brian, Miller Steve, Chiu Charles Y", "reference": { "type": "PubMed", "id": "32436571", "url": "https://pubmed.ncbi.nlm.nih.gov/32436571" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A663DJA2-1", "protein_name": "Putative ORF10 protein", "gene_name": "ORF10", "tax_name": "2019-nCoV" } ], "species": [ { "name": "Severe acute respiratory syndrome coronavirus 2", "taxid": 2697049, "evidence": [ { "database": "UniProtKB", "id": "A0A663DJA2", "url": "https://www.uniprot.org/uniprotkb/A0A663DJA2" } ], "common_name": "2019-nCoV", "glygen_name": "SARS-CoV-2", "reference_species": "Severe acute respiratory syndrome coronavirus 2 [2697049]" } ], "record_id": "pubmed.32436571", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "SARS-CoV-2 Phylogenetic Analysis, Lazio Region, Italy, February-March 2020.", "journal": "Emerg. 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Dis.", "date": "2020", "authors": "Bartolini Barbara, Rueca Martina, Gruber Cesare Ernesto Maria, Messina Francesco, Carletti Fabrizio, Giombini Emanuela, Lalle Eleonora, Bordi Licia, Matusali Giulia, Colavita Francesca, Castilletti Concetta, Vairo Francesco, Ippolito Giuseppe, Capobianchi Maria Rosaria, Di Caro Antonino", "reference": { "type": "PubMed", "id": "32459984", "url": "https://pubmed.ncbi.nlm.nih.gov/32459984" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A663DJA2-1", "protein_name": "Putative ORF10 protein", "gene_name": "ORF10", "tax_name": "2019-nCoV" } ], "species": [ { "name": "Severe acute respiratory syndrome coronavirus 2", "taxid": 2697049, "evidence": [ { "database": "UniProtKB", "id": "A0A663DJA2", "url": "https://www.uniprot.org/uniprotkb/A0A663DJA2" } ], "common_name": "2019-nCoV", "glygen_name": "SARS-CoV-2", "reference_species": "Severe acute respiratory syndrome coronavirus 2 [2697049]" } ], "record_id": "pubmed.32459984", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Complete Genome Sequence of a SARS-CoV-2 Strain Isolated in Northern Germany.", "journal": "Microbiol. 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Pache Lars, Burgstaller-Muehlbacher Sebastian, De Jesus Paul D, Teriete Peter, Hull Mitchell V, Chang Max W, Chan Jasper Fuk-Woo, Cao Jianli, Poon Vincent Kwok-Man, Herbert Kristina M, Cheng Kuoyuan, Nguyen Tu-Trinh H, Rubanov Andrey, Pu Yuan, Nguyen Courtney, Choi Angela, Rathnasinghe Raveen, Schotsaert Michael, Miorin Lisa, Dejosez Marion, Zwaka Thomas P, Sit Ko-Yung, Martinez-Sobrido Luis, Liu Wen-Chun, White Kris M, Chapman Mackenzie E, Lendy Emma K, Glynne Richard J, Albrecht Randy, Ruppin Eytan, Mesecar Andrew D, Johnson Jeffrey R, Benner Christopher, Sun Ren, Schultz Peter G, Su Andrew I, Garc\u00eda-Sastre Adolfo, Chatterjee Arnab K, Yuen Kwok-Yung, Chanda Sumit K", "reference": { "type": "PubMed", "id": "32707573", "url": "https://pubmed.ncbi.nlm.nih.gov/32707573" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A663DJA2-1", "protein_name": "Putative ORF10 protein", "gene_name": "ORF10", "tax_name": "2019-nCoV" } ], "species": [ { "name": 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"field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A mouse-adapted model of SARS-CoV-2 to test COVID-19 countermeasures.", "journal": "Nature", "date": "2020", "authors": "Dinnon Kenneth H, Leist Sarah R, Sch\u00e4fer Alexandra, Edwards Caitlin E, Martinez David R, Montgomery Stephanie A, West Ande, Yount Boyd L, Hou Yixuan J, Adams Lily E, Gully Kendra L, Brown Ariane J, Huang Emily, Bryant Matthew D, Choong Ingrid C, Glenn Jeffrey S, Gralinski Lisa E, Sheahan Timothy P, Baric Ralph S", "reference": { "type": "PubMed", "id": "32854108", "url": "https://pubmed.ncbi.nlm.nih.gov/32854108" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A663DJA2-1", "protein_name": "Putative ORF10 protein", "gene_name": "ORF10", "tax_name": "2019-nCoV" } ], "species": [ { "name": "Severe acute respiratory syndrome coronavirus 2", "taxid": 2697049, "evidence": [ { "database": "UniProtKB", "id": "A0A663DJA2", "url": "https://www.uniprot.org/uniprotkb/A0A663DJA2" } ], "common_name": "2019-nCoV", "glygen_name": "SARS-CoV-2", "reference_species": "Severe acute respiratory syndrome coronavirus 2 [2697049]" } ], "record_id": "pubmed.32854108", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", 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"Rapid incorporation of Favipiravir by the fast and permissive viral RNA polymerase complex results in SARS-CoV-2 lethal mutagenesis.", "journal": "Nat. Commun.", "date": "2020", "authors": "Shannon Ashleigh, Selisko Barbara, Le Nhung-Thi-Tuyet, Huchting Johanna, Touret Franck, Piorkowski G\u00e9raldine, Fattorini V\u00e9ronique, Ferron Fran\u00e7ois, Decroly Etienne, Meier Chris, Coutard Bruno, Peersen Olve, Canard Bruno", "reference": { "type": "PubMed", "id": "32943628", "url": "https://pubmed.ncbi.nlm.nih.gov/32943628" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A663DJA2-1", "protein_name": "Putative ORF10 protein", "gene_name": "ORF10", "tax_name": "2019-nCoV" } ], "species": [ { "name": "Severe acute respiratory syndrome coronavirus 2", "taxid": 2697049, "evidence": [ { "database": "UniProtKB", "id": "A0A663DJA2", "url": "https://www.uniprot.org/uniprotkb/A0A663DJA2" } ], "common_name": "2019-nCoV", "glygen_name": "SARS-CoV-2", "reference_species": "Severe acute respiratory syndrome coronavirus 2 [2697049]" } ], "record_id": "pubmed.32943628", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Viable SARS-CoV-2 in the air of a hospital room with COVID-19 patients.", "journal": "Int. J. Infect. Dis.", "date": "2020", "authors": "Lednicky John A, Lauzard Michael, Fan Z Hugh, Jutla Antarpreet, Tilly Trevor B, Gangwar Mayank, Usmani Moiz, Shankar Sripriya Nannu, Mohamed Karim, Eiguren-Fernandez Arantza, Stephenson Caroline J, Alam Md Mahbubul, Elbadry Maha A, Loeb Julia C, Subramaniam Kuttichantran, Waltzek Thomas B, Cherabuddi Kartikeya, Morris J Glenn, Wu Chang-Yu", "reference": { "type": "PubMed", "id": "32949774", "url": "https://pubmed.ncbi.nlm.nih.gov/32949774" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A663DJA2-1", "protein_name": "Putative ORF10 protein", "gene_name": "ORF10", "tax_name": "2019-nCoV" } ], "species": [ { "name": "Severe acute respiratory syndrome coronavirus 2", "taxid": 2697049, "evidence": [ { "database": "UniProtKB", "id": "A0A663DJA2", "url": "https://www.uniprot.org/uniprotkb/A0A663DJA2" } ], "common_name": "2019-nCoV", "glygen_name": "SARS-CoV-2", "reference_species": "Severe acute respiratory syndrome 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Bilich Tatjana, Heitmann Jonas S, Maringer Yacine, Salih Helmut R, Roerden Malte, L\u00fcbke Maren, Bauer Jens, Rieth Jonas, Wacker Marcel, Peter Andreas, H\u00f6rber Sebastian, Traenkle Bjoern, Kaiser Philipp D, Rothbauer Ulrich, Becker Matthias, Junker Daniel, Krause G\u00e9rard, Strengert Monika, Schneiderhan-Marra Nicole, Templin Markus F, Joos Thomas O, Kowalewski Daniel J, Stos-Zweifel Vlatka, Fehr Michael, Rabsteyn Armin, Mirakaj Valbona, Karbach Julia, J\u00e4ger Elke, Graf Michael, Gruber Lena-Christin, Rachfalski David, Preu\u00df Beate, Hagelstein Ilona, M\u00e4rklin Melanie, Bakchoul Tamam, Gouttefangeas C\u00e9cile, Kohlbacher Oliver, Klein Reinhild, Stevanovi\u0107 Stefan, Rammensee Hans-Georg, Walz Juliane S", "reference": { "type": "PubMed", "id": "32999467", "url": "https://pubmed.ncbi.nlm.nih.gov/32999467" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A663DJA2-1", "protein_name": "Putative ORF10 protein", "gene_name": "ORF10", 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Laboratory Mice.", "journal": "Cell", "date": "2020", "authors": "Leist Sarah R, Dinnon Kenneth H, Sch\u00e4fer Alexandra, Tse Longping V, Okuda Kenichi, Hou Yixuan J, West Ande, Edwards Caitlin E, Sanders Wes, Fritch Ethan J, Gully Kendra L, Scobey Trevor, Brown Ariane J, Sheahan Timothy P, Moorman Nathaniel J, Boucher Richard C, Gralinski Lisa E, Montgomery Stephanie A, Baric Ralph S", "reference": { "type": "PubMed", "id": "33031744", "url": "https://pubmed.ncbi.nlm.nih.gov/33031744" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A663DJA2-1", "protein_name": "Putative ORF10 protein", "gene_name": "ORF10", "tax_name": "2019-nCoV" } ], "species": [ { "name": "Severe acute respiratory syndrome coronavirus 2", "taxid": 2697049, "evidence": [ { "database": "UniProtKB", "id": "A0A663DJA2", "url": "https://www.uniprot.org/uniprotkb/A0A663DJA2" } ], "common_name": "2019-nCoV", "glygen_name": "SARS-CoV-2", "reference_species": "Severe acute respiratory 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Melissa, Wang Leyi, Killian Mary Lea, Caserta Leonardo C, Yuan Fangfeng, Mitchell Patrick K, Queen Krista, Mauldin Matthew R, Cronk Brittany D, Bartlett Susan L, Sykes John M, Zec Stephanie, Stokol Tracy, Ingerman Karen, Delaney Martha A, Fredrickson Richard, Ivan\u010di\u0107 Marina, Jenkins-Moore Melinda, Mozingo Katie, Franzen Kerrie, Bergeson Nichole Hines, Goodman Laura, Wang Haibin, Fang Ying, Olmstead Colleen, McCann Colleen, Thomas Patrick, Goodrich Erin, Elvinger Fran\u00e7ois, Smith David C, Tong Suxiang, Slavinski Sally, Calle Paul P, Terio Karen, Torchetti Mia Kim, Diel Diego G", "reference": { "type": "PubMed", "id": "33051368", "url": "https://pubmed.ncbi.nlm.nih.gov/33051368" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A663DJA2-1", "protein_name": "Putative ORF10 protein", "gene_name": "ORF10", "tax_name": "2019-nCoV" } ], "species": [ { "name": "Severe acute respiratory syndrome coronavirus 2", "taxid": 2697049, "evidence": [ { 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"count": 0 } ], "sort_fields": [] } ] }, { "title": "Case Study: Prolonged Infectious SARS-CoV-2 Shedding from an Asymptomatic Immunocompromised Individual with Cancer.", "journal": "Cell", "date": "2020", "authors": "Avanzato Victoria A, Matson M Jeremiah, Seifert Stephanie N, Pryce Rhys, Williamson Brandi N, Anzick Sarah L, Barbian Kent, Judson Seth D, Fischer Elizabeth R, Martens Craig, Bowden Thomas A, de Wit Emmie, Riedo Francis X, Munster Vincent J", "reference": { "type": "PubMed", "id": "33248470", "url": "https://pubmed.ncbi.nlm.nih.gov/33248470" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A663DJA2-1", "protein_name": "Putative ORF10 protein", "gene_name": "ORF10", "tax_name": "2019-nCoV" } ], "species": [ { "name": "Severe acute respiratory syndrome coronavirus 2", "taxid": 2697049, "evidence": [ { "database": "UniProtKB", "id": "A0A663DJA2", "url": "https://www.uniprot.org/uniprotkb/A0A663DJA2" } ], "common_name": "2019-nCoV", 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"date": "2020", "authors": "Pancer Katarzyna, Milewska Aleksandra, Owczarek Katarzyna, Dabrowska Agnieszka, Kowalski Micha\u0142, \u0141abaj Pawe\u0142 P, Branicki Wojciech, Sanak Marek, Pyrc Krzysztof", "reference": { "type": "PubMed", "id": "33301543", "url": "https://pubmed.ncbi.nlm.nih.gov/33301543" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A663DJA2-1", "protein_name": "Putative ORF10 protein", "gene_name": "ORF10", "tax_name": "2019-nCoV" } ], "species": [ { "name": "Severe acute respiratory syndrome coronavirus 2", "taxid": 2697049, "evidence": [ { "database": "UniProtKB", "id": "A0A663DJA2", "url": "https://www.uniprot.org/uniprotkb/A0A663DJA2" } ], "common_name": "2019-nCoV", "glygen_name": "SARS-CoV-2", "reference_species": "Severe acute respiratory syndrome coronavirus 2 [2697049]" } ], "record_id": "pubmed.33301543", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], 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Infect. Dis.", "date": "2021", "authors": "Leung Kenneth Siu-Sing, Ng Timothy Ting-Leung, Wu Alan Ka-Lun, Yau Miranda Chong-Yee, Lao Hiu-Yin, Choi Ming-Pan, Tam Kingsley King-Gee, Lee Lam-Kwong, Wong Barry Kin-Chung, Man Ho Alex Yat, Yip Kam-Tong, Lung Kwok-Cheung, Liu Raymond Wai-To, Tso Eugene Yuk-Keung, Leung Wai-Shing, Chan Man-Chun, Ng Yuk-Yung, Sin Kit-Man, Fung Kitty Sau-Chun, Chau Sandy Ka-Yee, To Wing-Kin, Que Tak-Lun, Shum David Ho-Keung, Yip Shea Ping, Yam Wing Cheong, Siu Gilman Kit-Hang", "reference": { "type": "PubMed", "id": "33350913", "url": "https://pubmed.ncbi.nlm.nih.gov/33350913" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A663DJA2-1", "protein_name": "Putative ORF10 protein", "gene_name": "ORF10", "tax_name": "2019-nCoV" } ], "species": [ { "name": "Severe acute respiratory syndrome coronavirus 2", "taxid": 2697049, "evidence": [ { "database": "UniProtKB", "id": "A0A663DJA2", "url": "https://www.uniprot.org/uniprotkb/A0A663DJA2" } ], 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Florida: Identification together with influenza virus on the main entry door of a university building, February 2020.", "journal": "PLoS ONE", "date": "2021", "authors": "Lednicky John, Salemi Marco, Subramaniam Kuttichantran, Waltzek Thomas B, Sabo-Attwood Tara, Loeb Julia C, Hentschel Shannon, Tagliamonte Massimiliano S, Marini Simone, Alam Md Mahbubul, Stephenson Caroline J, Elbadry Maha, Morris J Glenn", "reference": { "type": "PubMed", "id": "33439885", "url": "https://pubmed.ncbi.nlm.nih.gov/33439885" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A663DJA2-1", "protein_name": "Putative ORF10 protein", "gene_name": "ORF10", "tax_name": "2019-nCoV" } ], "species": [ { "name": "Severe acute respiratory syndrome coronavirus 2", "taxid": 2697049, "evidence": [ { "database": "UniProtKB", "id": "A0A663DJA2", "url": "https://www.uniprot.org/uniprotkb/A0A663DJA2" } ], "common_name": "2019-nCoV", "glygen_name": "SARS-CoV-2", "reference_species": "Severe 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Emerg. Dis.", "date": "2021", "authors": "Panzera Yanina, Ramos Natalia, Frabasile Sandra, Calleros Luc\u00eda, Marandino Ana, Tom\u00e1s Gonzalo, Techera Claudia, Grecco Sof\u00eda, Fuques Eddie, Go\u00f1i Natalia, Ramas Viviana, Coppola Leticia, Chiparelli H\u00e9ctor, Sorhouet Cecilia, Mogdasy Cristina, Arbiza Juan, Delfraro Adriana, P\u00e9rez Ruben", "reference": { "type": "PubMed", "id": "33501730", "url": "https://pubmed.ncbi.nlm.nih.gov/33501730" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A663DJA2-1", "protein_name": "Putative ORF10 protein", "gene_name": "ORF10", "tax_name": "2019-nCoV" } ], "species": [ { "name": "Severe acute respiratory syndrome coronavirus 2", "taxid": 2697049, "evidence": [ { "database": "UniProtKB", "id": "A0A663DJA2", "url": "https://www.uniprot.org/uniprotkb/A0A663DJA2" } ], "common_name": "2019-nCoV", "glygen_name": "SARS-CoV-2", "reference_species": "Severe acute respiratory syndrome coronavirus 2 [2697049]" } ], 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"Lau Susanna K P, Lung David C, Wong Emily Y M, Aw-Yong Kam Leng, Wong Antonio C P, Luk Hayes K H, Li Kenneth S M, Fung Joshua, Chan Tony T Y, Tang James Y M, Zhu Longchao, Yip Cyril C Y, Wong Sally C Y, Lee Rodney A, Tsang Owen T Y, Yuen Kwok-Yung, Woo Patrick C Y", "reference": { "type": "PubMed", "id": "33568452", "url": "https://pubmed.ncbi.nlm.nih.gov/33568452" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A663DJA2-1", "protein_name": "Putative ORF10 protein", "gene_name": "ORF10", "tax_name": "2019-nCoV" } ], "species": [ { "name": "Severe acute respiratory syndrome coronavirus 2", "taxid": 2697049, "evidence": [ { "database": "UniProtKB", "id": "A0A663DJA2", "url": "https://www.uniprot.org/uniprotkb/A0A663DJA2" } ], "common_name": "2019-nCoV", "glygen_name": "SARS-CoV-2", "reference_species": "Severe acute respiratory syndrome coronavirus 2 [2697049]" } ], "record_id": "pubmed.33568452", "abstract": "", "glycosylation": [], "mutagenesis": [], 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Geyer Anna, Giesel Daniel, Goldfarb Daniel M, Goodman Nicola, Gunson Rory, Hastie C James, Herder Vanessa, Hughes Joseph, Johnson Clare, Johnson Natasha, Kohl Alain, Kerr Karen, Leech Hannah, Lello Laura Sandra, Li Kathy, Lieber Gauthier, Liu Xiang, Lingala Rajendra, Loney Colin, Mair Daniel, McElwee Marion J, McFarlane Steven, Nichols Jenna, Nomikou Kyriaki, Orr Anne, Orton Richard J, Palmarini Massimo, Parr Yasmin A, Pinto Rute Maria, Raggett Samantha, Reid Elaine, Robertson David L, Royle Jamie, Cameron-Ruiz Natalia, Shepherd James G, Smollett Katherine, Stewart Douglas G, Stewart Meredith, Sugrue Elena, Szemiel Agnieszka M, Taggart Aislynn, Thomson Emma C, Tong Lily, Torrie Leah S, Toth Rachel, Varjak Margus, Wang Sainan, Wilkinson Stuart G, Wyatt Paul G, Zusinaite Eva, Alessi Dario R, Patel Arvind H, Zaid Ali, Wilson Sam J, Mahalingam Suresh", "reference": { "type": "PubMed", "id": "33630831", "url": "https://pubmed.ncbi.nlm.nih.gov/33630831" }, "referenced_glycans": [], 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Resour. Announc.", "date": "2021", "authors": "Lednicky John A, Cherabuddi Kartikeya, Tagliamonte Massimiliano S, Elbadry Maha A, Subramaniam Kuttichantran, Waltzek Thomas B, Morris J Glenn", "reference": { "type": "PubMed", "id": "33632859", "url": "https://pubmed.ncbi.nlm.nih.gov/33632859" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A663DJA2-1", "protein_name": "Putative ORF10 protein", "gene_name": "ORF10", "tax_name": "2019-nCoV" } ], "species": [ { "name": "Severe acute respiratory syndrome coronavirus 2", "taxid": 2697049, "evidence": [ { "database": "UniProtKB", "id": "A0A663DJA2", "url": "https://www.uniprot.org/uniprotkb/A0A663DJA2" } ], "common_name": "2019-nCoV", "glygen_name": "SARS-CoV-2", "reference_species": "Severe acute respiratory syndrome coronavirus 2 [2697049]" } ], "record_id": "pubmed.33632859", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Early Diffusion of SARS-CoV-2 Infection in the Inner Area of the Italian Sardinia Island.", "journal": "Front. Microbiol.", "date": "2020", "authors": "Piras Giovanna, Grandi Nicole, Monne Maria, Asproni Rosanna, Fancello Tatiana, Fiamma Maura, Mameli Giuseppe, Casu Gavino, Lo Maglio Iana, Palmas Angelo D, Tramontano Enzo", "reference": { "type": "PubMed", "id": "33643227", "url": "https://pubmed.ncbi.nlm.nih.gov/33643227" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A663DJA2-1", "protein_name": "Putative ORF10 protein", "gene_name": "ORF10", "tax_name": "2019-nCoV" } ], "species": [ { "name": "Severe acute respiratory syndrome coronavirus 2", "taxid": 2697049, "evidence": [ { "database": "UniProtKB", "id": "A0A663DJA2", "url": "https://www.uniprot.org/uniprotkb/A0A663DJA2" } ], "common_name": "2019-nCoV", "glygen_name": "SARS-CoV-2", "reference_species": "Severe acute respiratory syndrome coronavirus 2 [2697049]" } ], "record_id": "pubmed.33643227", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Emergence of a Severe Acute Respiratory Syndrome Coronavirus 2 Virus Variant With Novel Genomic Architecture in Hong Kong.", "journal": "Clin. 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Dis.", "date": "2021", "authors": "Tse Herman, Lung David Christopher, Wong Sally Cheuk-Ying, Ip Ka-Fai, Wu Tak-Chiu, To Kelvin Kai-Wang, Kok Kin-Hang, Yuen Kwok-Yung, Choi Garnet Kwan-Yue", "reference": { "type": "PubMed", "id": "33675655", "url": "https://pubmed.ncbi.nlm.nih.gov/33675655" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A663DJA2-1", "protein_name": "Putative ORF10 protein", "gene_name": "ORF10", "tax_name": "2019-nCoV" } ], "species": [ { "name": "Severe acute respiratory syndrome coronavirus 2", "taxid": 2697049, "evidence": [ { "database": "UniProtKB", "id": "A0A663DJA2", "url": "https://www.uniprot.org/uniprotkb/A0A663DJA2" } ], "common_name": "2019-nCoV", "glygen_name": "SARS-CoV-2", "reference_species": "Severe acute respiratory syndrome coronavirus 2 [2697049]" } ], "record_id": "pubmed.33675655", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { 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G, Evans Cariad, Raza Mohammad, Keeley Alexander J, Smith Nikki, Filipe Ana Da Silva, Shepherd James G, Davis Chris, Bennett Sahan, Sreenu Vattipally B, Kohl Alain, Aranday-Cortes Elihu, Tong Lily, Nichols Jenna, Thomson Emma C, , Wang Dennis, Mallal Simon, de Silva Thushan I", "reference": { "type": "PubMed", "id": "33722935", "url": "https://pubmed.ncbi.nlm.nih.gov/33722935" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A663DJA2-1", "protein_name": "Putative ORF10 protein", "gene_name": "ORF10", "tax_name": "2019-nCoV" } ], "species": [ { "name": "Severe acute respiratory syndrome coronavirus 2", "taxid": 2697049, "evidence": [ { "database": "UniProtKB", "id": "A0A663DJA2", "url": "https://www.uniprot.org/uniprotkb/A0A663DJA2" } ], "common_name": "2019-nCoV", "glygen_name": "SARS-CoV-2", "reference_species": "Severe acute respiratory syndrome coronavirus 2 [2697049]" } ], "record_id": "pubmed.33722935", "abstract": "", "glycosylation": [], 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"glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Genome-Wide B Cell, CD4+, and CD8+ T Cell Epitopes That Are Highly Conserved between Human and Animal Coronaviruses, Identified from SARS-CoV-2 as Targets for Preemptive Pan-Coronavirus Vaccines.", "journal": "Journal of immunology (Baltimore, Md. : 1950)", "date": "2021-06-01", "authors": "Prakash Swayam, Srivastava Ruchi, Coulon Pierre-Gregoire, Dhanushkodi Nisha R, Chentoufi Aziz A, Tifrea Delia F, Edwards Robert A, Figueroa Cesar J, Schubl Sebastian D, Hsieh Lanny, Buchmeier Michael J, Bouziane Mohammed, Nesburn Anthony B, Kuppermann 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"count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": 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"Structural Basis for RNA Replication by the SARS-CoV-2 Polymerase.", "journal": "Cell", "date": "2020", "authors": "Wang Q, Wu J, Wang H, Gao Y, Liu Q, Mu A, Ji W, Yan L, Zhu Y, Zhu C, Fang X, Yang X, Huang Y, Gao H, Liu F, Ge J, Sun Q, Yang X, Xu W, Liu Z, Yang H, Lou Z, Jiang B, Guddat LW, Gong P, Rao Z", "reference": { "type": "PubMed", "id": "32526208", "url": "https://pubmed.ncbi.nlm.nih.gov/32526208" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P0DTC1-1", "protein_name": "Replicase polyprotein 1a", "gene_name": "", "tax_name": "2019-nCoV" }, { "uniprot_canonical_ac": "P0DTD1-1", "protein_name": "Replicase polyprotein 1ab", "gene_name": "rep", "tax_name": "2019-nCoV" } ], "species": [ { "name": "Severe acute respiratory syndrome coronavirus 2", "taxid": 2697049, "evidence": [ { "database": "UniProtKB", "id": "P0DTC1", "url": "https://www.uniprot.org/uniprotkb/P0DTC1" } ], "common_name": "2019-nCoV", "glygen_name": "SARS-CoV-2", "reference_species": "Severe acute respiratory syndrome coronavirus 2 [2697049]" } ], "mutagenesis": [ { "start_pos": 5253, "end_pos": 5253, "sequence_org": "S", "sequence_mut": "A", "comment": "Reduces RdRp inhibition by remdesivir.", "evidence": [ { "database": "UniProtKB", "id": "P0DTD1", "url": "https://www.uniprot.org/uniprotkb/P0DTD1" }, { "database": "PubMed", "id": "32526208", "url": "https://pubmed.ncbi.nlm.nih.gov/32526208" } ], "uniprot_canonical_ac": "P0DTD1-1" } ], "record_id": "pubmed.32526208", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": 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"count": 0 } ], "sort_fields": [] } ] }, { "title": "Activation and evasion of type I interferon responses by SARS-CoV-2.", "journal": "Nature communications", "date": "2020-07-30", "authors": "Lei Xiaobo, Dong Xiaojing, Ma Ruiyi, Wang Wenjing, Xiao Xia, Tian Zhongqin, Wang Conghui, Wang Ying, Li Li, Ren Lili, Guo Fei, Zhao Zhendong, Zhou Zhuo, Xiang Zichun, Wang Jianwei", "reference": { "type": "PubMed", "id": "32733001", "url": "https://pubmed.ncbi.nlm.nih.gov/32733001" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P0DTC1-1", "protein_name": "Replicase polyprotein 1a", "gene_name": "", "tax_name": "2019-nCoV" }, { "uniprot_canonical_ac": "P0DTD1-1", "protein_name": "Replicase polyprotein 1ab", "gene_name": "rep", "tax_name": "2019-nCoV" } ], "species": [ { "name": "Severe acute respiratory syndrome coronavirus 2", "taxid": 2697049, "evidence": [ { "database": "UniProtKB", "id": "P0DTC1", "url": "https://www.uniprot.org/uniprotkb/P0DTC1" } ], 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the coronavirus replication organelle.", "journal": "Science", "date": "2020", "authors": "Wolff Georg, Limpens Ronald W A L, Zevenhoven-Dobbe Jessika C, Laugks Ulrike, Zheng Shawn, de Jong Anja W M, Koning Roman I, Agard David A, Gr\u00fcnewald Kay, Koster Abraham J, Snijder Eric J, B\u00e1rcena Montserrat", "reference": { "type": "PubMed", "id": "32763915", "url": "https://pubmed.ncbi.nlm.nih.gov/32763915" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P0DTC1-1", "protein_name": "Replicase polyprotein 1a", "gene_name": "", "tax_name": "2019-nCoV" }, { "uniprot_canonical_ac": "P0DTD1-1", "protein_name": "Replicase polyprotein 1ab", "gene_name": "rep", "tax_name": "2019-nCoV" } ], "species": [ { "name": "Severe acute respiratory syndrome coronavirus 2", "taxid": 2697049, "evidence": [ { "database": "UniProtKB", "id": "P0DTC1", "url": "https://www.uniprot.org/uniprotkb/P0DTC1" } ], "common_name": "2019-nCoV", "glygen_name": "SARS-CoV-2", 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"glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Structural, Biophysical, and Biochemical Elucidation of the SARS-CoV-2 Nonstructural Protein 3 Macro Domain.", "journal": "ACS Infect. Dis.", "date": "2020", "authors": "Chang S.C., Hsu C.H., Jiang B.C., Chiu Y.C., Lin M.H., Wu T.H.", "reference": { "type": "PubMed", "id": "32946224", "url": "https://pubmed.ncbi.nlm.nih.gov/32946224" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P0DTC1-1", "protein_name": "Replicase polyprotein 1a", "gene_name": "", "tax_name": "2019-nCoV" } ], "species": [ { "name": "Severe acute respiratory syndrome coronavirus 2", "taxid": 2697049, "evidence": [ { "database": "UniProtKB", "id": "P0DTC1", "url": "https://www.uniprot.org/uniprotkb/P0DTC1" } ], "common_name": "2019-nCoV", "glygen_name": "SARS-CoV-2", "reference_species": "Severe acute respiratory syndrome coronavirus 2 [2697049]" } ], "record_id": "pubmed.32946224", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ 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Biol. Chem.", "date": "2021", "authors": "Perry Jason K, Appleby Todd C, Bilello John P, Feng Joy Y, Schmitz Uli, Campbell Elizabeth A", "reference": { "type": "PubMed", "id": "34562452", "url": "https://pubmed.ncbi.nlm.nih.gov/34562452" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P0DTC1-1", "protein_name": "Replicase polyprotein 1a", "gene_name": "", "tax_name": "2019-nCoV" }, { "uniprot_canonical_ac": "P0DTD1-1", "protein_name": "Replicase polyprotein 1ab", "gene_name": "rep", "tax_name": "2019-nCoV" } ], "species": [ { "name": "Severe acute respiratory syndrome coronavirus 2", "taxid": 2697049, "evidence": [ { "database": "UniProtKB", "id": "P0DTC1", "url": "https://www.uniprot.org/uniprotkb/P0DTC1" } ], "common_name": "2019-nCoV", "glygen_name": "SARS-CoV-2", "reference_species": "Severe acute respiratory syndrome coronavirus 2 [2697049]" } ], "record_id": "pubmed.34562452", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], 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}, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The impact of viral mutations on recognition by SARS-CoV-2 specific T\u00a0cells.", "journal": "iScience", "date": "2021-11-19", "authors": "de Silva Thushan I, Liu Guihai, Lindsey Benjamin B, Dong Danning, Moore Shona C, Hsu Nienyun Sharon, Shah Dhruv, Wellington Dannielle, Mentzer Alexander J, Angyal Adrienn, Brown Rebecca, Parker Matthew D, Ying Zixi, Yao Xuan, Turtle Lance, Dunachie Susanna, , Maini Mala K, Ogg Graham, Knight Julian C, , Peng Yanchun, Rowland-Jones Sarah L, Dong Tao", "reference": { "type": "PubMed", "id": "34729465", "url": "https://pubmed.ncbi.nlm.nih.gov/34729465" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P0DTC1-1", "protein_name": "Replicase polyprotein 1a", "gene_name": "", "tax_name": "2019-nCoV" }, { "uniprot_canonical_ac": "P0DTC2-1", "protein_name": "Spike glycoprotein", "gene_name": "S", "tax_name": "2019-nCoV" }, { "uniprot_canonical_ac": "P0DTC3-1", "protein_name": "ORF3a protein", "gene_name": "3a", "tax_name": "2019-nCoV" } ], "species": [ { "name": "Severe acute respiratory syndrome coronavirus 2", "taxid": 2697049, "evidence": [ { "database": "UniProtKB", "id": "P0DTC1", "url": "https://www.uniprot.org/uniprotkb/P0DTC1" } ], "common_name": "2019-nCoV", "glygen_name": "SARS-CoV-2", "reference_species": "Severe acute 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"field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The intrinsically disordered SARS-CoV-2 nucleoprotein in dynamic complex with its viral partner nsp3a.", "journal": "Sci. Adv.", "date": "2022", "authors": "Bessa Luiza Mamigonian, Guseva Serafima, Camacho-Zarco Aldo R, Salvi Nicola, Maurin Damien, Perez Laura Mari\u00f1o, Botova Maiia, Malki Anas, Nanao Max, Jensen Malene Ringkj\u00f8bing, Ruigrok Rob W H, Blackledge Martin", "reference": { "type": "PubMed", "id": "35044811", "url": "https://pubmed.ncbi.nlm.nih.gov/35044811" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P0DTC1-1", "protein_name": "Replicase polyprotein 1a", "gene_name": "", "tax_name": "2019-nCoV" }, { "uniprot_canonical_ac": "P0DTC9-1", "protein_name": "Nucleoprotein", "gene_name": "N", "tax_name": "2019-nCoV" }, { "uniprot_canonical_ac": "P0DTD1-1", "protein_name": "Replicase polyprotein 1ab", "gene_name": "rep", "tax_name": "2019-nCoV" } ], "species": [ { "name": "Severe acute respiratory syndrome coronavirus 2", "taxid": 2697049, "evidence": [ { "database": "UniProtKB", "id": "P0DTC1", "url": "https://www.uniprot.org/uniprotkb/P0DTC1" } ], "common_name": "2019-nCoV", "glygen_name": "SARS-CoV-2", "reference_species": "Severe acute respiratory syndrome coronavirus 2 [2697049]" } ], "record_id": "pubmed.35044811", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], 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"o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "SARS-CoV-2 antigen exposure history shapes phenotypes and specificity of memory CD8+ T cells.", "journal": "Nature immunology", "date": "2022-05", "authors": "Minervina Anastasia A, Pogorelyy Mikhail V, Kirk Allison M, Crawford Jeremy Chase, Allen E Kaitlynn, Chou Ching-Heng, Mettelman Robert C, Allison Kim J, Lin Chun-Yang, Brice David C, Zhu Xun, Vegesana Kasi, Wu Gang, Trivedi Sanchit, Kottapalli Pratibha, Darnell Daniel, McNeely Suzanne, Olsen Scott R, Schultz-Cherry Stacey, Estepp Jeremie H, , McGargill Maureen A, Wolf Joshua, Thomas Paul G", "reference": { "type": "PubMed", "id": "35383307", "url": "https://pubmed.ncbi.nlm.nih.gov/35383307" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P0DTC1-1", "protein_name": "Replicase polyprotein 1a", "gene_name": "", "tax_name": "2019-nCoV" }, { "uniprot_canonical_ac": "P0DTC2-1", "protein_name": "Spike glycoprotein", "gene_name": "S", "tax_name": "2019-nCoV" }, { "uniprot_canonical_ac": "P0DTC3-1", "protein_name": "ORF3a protein", "gene_name": 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Expression construct included residues 1\u22121208 of the SARS-CoV-2 S (GenBank: MN908947) with proline substitutions at residues 986 and 987, a \u201cGSAS\u201d substitution at the furin cleavage site (residues 682\u2013685), a C-terminal T4 fibritin trimerization motif, an HRV3C protease cleavage site, a TwinStrepTag and an 8XHisTag.", "icn3d_view": {}, "start_pos": 657, "start_aa": "Asn", "end_pos": 657, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn657", "evidence": [ { "id": "34004174", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/34004174" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1016/j.celrep.2021.109179", "database": "DOI", "url": "https://doi.org/10.1016/j.celrep.2021.109179" }, { "id": "32366695", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/32366695" }, { "id": "10.1126/science.abb9983", "database": "DOI", "url": "https://doi.org/10.1126/science.abb9983" }, { "id": "33077685", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/33077685" }, { "id": "10.1101/2020.03.28.013276", "database": "DOI", "url": "https://doi.org/10.1101/2020.03.28.013276" } ], "filter_code": "001000000000000000000.0000000.00000000001000.0100000.1110000000.010111100011111101.00010.01000", "uniprot_canonical_ac": "P0DTC2-1" }, { "glytoucan_ac": "G68318VE", "type": "N-linked;o-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "S2P-AC", "icn3d_view": {}, "start_pos": 657, "start_aa": "Asn", "end_pos": 657, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn657", "evidence": [ { "id": "33064451", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/33064451" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1021/acs.analchem.0c03301", "database": "DOI", "url": "https://doi.org/10.1021/acs.analchem.0c03301" }, { "id": "34004174", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/34004174" }, { "id": "10.1016/j.celrep.2021.109179", "database": "DOI", "url": "https://doi.org/10.1016/j.celrep.2021.109179" }, { "id": "32366695", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/32366695" }, { "id": "10.1126/science.abb9983", "database": "DOI", "url": "https://doi.org/10.1126/science.abb9983" }, { "id": "33077685", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/33077685" }, { "id": "10.1101/2020.03.28.013276", "database": "DOI", "url": "https://doi.org/10.1101/2020.03.28.013276" } ], "filter_code": "001000000000000000000.0000000.00000000001000.0100000.1110000000.010111000011111101.00010.01000", "uniprot_canonical_ac": "P0DTC2-1" }, { "glytoucan_ac": "G69107AL", "type": "N-linked;o-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Elastase digestion of purified S protein, providing glycopeptide identification metrics from Byonic search. Expression construct included residues 1\u22121208 of the SARS-CoV-2 S (GenBank: MN908947) with proline substitutions at residues 986 and 987, a \u201cGSAS\u201d substitution at the furin cleavage site (residues 682\u2013685), a C-terminal T4 fibritin trimerization motif, an HRV3C protease cleavage site, a TwinStrepTag and an 8XHisTag.", "icn3d_view": {}, "start_pos": 657, "start_aa": "Asn", "end_pos": 657, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn657", "evidence": [ { "id": "34004174", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/34004174" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1016/j.celrep.2021.109179", "database": "DOI", "url": "https://doi.org/10.1016/j.celrep.2021.109179" }, { "id": "32366695", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/32366695" }, { "id": "10.1126/science.abb9983", "database": "DOI", "url": "https://doi.org/10.1126/science.abb9983" } ], "filter_code": "001000000000000000000.0000000.00000000001000.0010000.1110000000.000111000001111101.00010.01000", "uniprot_canonical_ac": "P0DTC2-1" }, { "glytoucan_ac": "G85740DB", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "S2P-LC", "icn3d_view": {}, "start_pos": 657, "start_aa": "Asn", "end_pos": 657, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn657", "evidence": [ { "id": "33064451", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/33064451" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1021/acs.analchem.0c03301", "database": "DOI", "url": "https://doi.org/10.1021/acs.analchem.0c03301" }, { "id": "34004174", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/34004174" }, { "id": "10.1016/j.celrep.2021.109179", "database": "DOI", "url": "https://doi.org/10.1016/j.celrep.2021.109179" }, { "id": "32366695", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/32366695" }, { "id": "10.1126/science.abb9983", "database": "DOI", "url": "https://doi.org/10.1126/science.abb9983" }, { "id": "33077685", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/33077685" }, { "id": "10.1101/2020.03.28.013276", "database": "DOI", "url": "https://doi.org/10.1101/2020.03.28.013276" } ], "filter_code": "001000000000000000000.0000000.00010000000000.0100000.1110000000.010111000011111101.00010.01000", "uniprot_canonical_ac": "P0DTC2-1" }, { "glytoucan_ac": "G88725PI", "type": "N-linked;o-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "S2P-AC", "icn3d_view": {}, "start_pos": 657, "start_aa": "Asn", "end_pos": 657, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn657", "evidence": [ { "id": "33064451", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/33064451" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1021/acs.analchem.0c03301", "database": "DOI", "url": "https://doi.org/10.1021/acs.analchem.0c03301" }, { "id": "34004174", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/34004174" }, { "id": "10.1016/j.celrep.2021.109179", "database": "DOI", "url": "https://doi.org/10.1016/j.celrep.2021.109179" }, { "id": "32366695", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/32366695" }, { "id": "10.1126/science.abb9983", "database": "DOI", "url": "https://doi.org/10.1126/science.abb9983" }, { "id": "33077685", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/33077685" }, { "id": "10.1101/2020.03.28.013276", "database": "DOI", "url": "https://doi.org/10.1101/2020.03.28.013276" } ], "filter_code": "001000000000000000000.0000000.00000000001000.0100000.1110000000.010111100011111101.00010.01000", "uniprot_canonical_ac": "P0DTC2-1" }, { "glytoucan_ac": "G02815KT", "type": "N-linked;o-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Elastase digestion of purified S protein, providing glycopeptide identification metrics from Byonic search. Expression construct included residues 1\u22121208 of the SARS-CoV-2 S (GenBank: MN908947) with proline substitutions at residues 986 and 987, a \u201cGSAS\u201d substitution at the furin cleavage site (residues 682\u2013685), a C-terminal T4 fibritin trimerization motif, an HRV3C protease cleavage site, a TwinStrepTag and an 8XHisTag.", "icn3d_view": {}, "start_pos": 709, "start_aa": "Asn", "end_pos": 709, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn709", "evidence": [ { "id": "34004174", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/34004174" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1016/j.celrep.2021.109179", "database": "DOI", "url": "https://doi.org/10.1016/j.celrep.2021.109179" }, { "id": "33077685", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/33077685" }, { "id": "10.1074/mcp.RA120.002295", "database": "DOI", "url": "https://doi.org/10.1074/mcp.RA120.002295" }, { "id": "32366695", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/32366695" }, { "id": "10.1126/science.abb9983", "database": "DOI", "url": "https://doi.org/10.1126/science.abb9983" }, { "id": "32518941", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/32518941" } ], "filter_code": "001000000000000000000.xxxxxxx.00000000001000.xxxxxxx.xxxxxxxxxx.xxxxxxxxxxxxxxxxxx.xxxxx.01000", "uniprot_canonical_ac": "P0DTC2-1" }, { "glytoucan_ac": "G08293MJ", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Elastase digestion of purified S protein, providing glycopeptide identification metrics from Byonic search. Expression construct included residues 1\u22121208 of the SARS-CoV-2 S (GenBank: MN908947) with proline substitutions at residues 986 and 987, a \u201cGSAS\u201d substitution at the furin cleavage site (residues 682\u2013685), a C-terminal T4 fibritin trimerization motif, an HRV3C protease cleavage site, a TwinStrepTag and an 8XHisTag.", "icn3d_view": {}, "start_pos": 709, "start_aa": "Asn", "end_pos": 709, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn709", "evidence": [ { "id": "34004174", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/34004174" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1016/j.celrep.2021.109179", "database": "DOI", "url": "https://doi.org/10.1016/j.celrep.2021.109179" } ], "filter_code": "001000000000000000000.0000000.00010000000000.0010000.1110100000.010111000011111101.00100.01000", "uniprot_canonical_ac": "P0DTC2-1" }, { "glytoucan_ac": "G10339FR", "type": "N-linked;o-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Elastase digestion of purified S protein, providing glycopeptide identification metrics from Byonic search. Expression construct included residues 1\u22121208 of the SARS-CoV-2 S (GenBank: MN908947) with proline substitutions at residues 986 and 987, a \u201cGSAS\u201d substitution at the furin cleavage site (residues 682\u2013685), a C-terminal T4 fibritin trimerization motif, an HRV3C protease cleavage site, a TwinStrepTag and an 8XHisTag.", "icn3d_view": {}, "start_pos": 709, "start_aa": "Asn", "end_pos": 709, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn709", "evidence": [ { "id": "34004174", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/34004174" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1016/j.celrep.2021.109179", "database": "DOI", "url": "https://doi.org/10.1016/j.celrep.2021.109179" }, { "id": "33077685", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/33077685" }, { "id": "10.1074/mcp.RA120.002295", "database": "DOI", "url": "https://doi.org/10.1074/mcp.RA120.002295" }, { "id": "32518941", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/32518941" } ], "filter_code": "001000000000000000000.0000000.00000000001000.0100000.1110000000.010111100111111100.00010.01000", "uniprot_canonical_ac": "P0DTC2-1" }, { "glytoucan_ac": "G15486FH", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Elastase digestion of purified S protein, providing glycopeptide identification metrics from Byonic search. Expression construct included residues 1\u22121208 of the SARS-CoV-2 S (GenBank: MN908947) with proline substitutions at residues 986 and 987, a \u201cGSAS\u201d substitution at the furin cleavage site (residues 682\u2013685), a C-terminal T4 fibritin trimerization motif, an HRV3C protease cleavage site, a TwinStrepTag and an 8XHisTag.", "icn3d_view": {}, "start_pos": 709, "start_aa": "Asn", "end_pos": 709, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn709", "evidence": [ { "id": "34004174", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/34004174" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1016/j.celrep.2021.109179", "database": "DOI", "url": "https://doi.org/10.1016/j.celrep.2021.109179" }, { "id": "33077685", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/33077685" }, { "id": "10.1074/mcp.RA120.002295", "database": "DOI", "url": "https://doi.org/10.1074/mcp.RA120.002295" }, { "id": "32518941", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/32518941" } ], "filter_code": "001000000000000000000.0000000.00010000000000.0100000.1110000000.010111100011111101.00010.01000", "uniprot_canonical_ac": "P0DTC2-1" }, { "glytoucan_ac": "G25987BV", "type": "N-linked;o-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Elastase digestion of purified S protein, providing glycopeptide identification metrics from Byonic search. Expression construct included residues 1\u22121208 of the SARS-CoV-2 S (GenBank: MN908947) with proline substitutions at residues 986 and 987, a \u201cGSAS\u201d substitution at the furin cleavage site (residues 682\u2013685), a C-terminal T4 fibritin trimerization motif, an HRV3C protease cleavage site, a TwinStrepTag and an 8XHisTag.", "icn3d_view": {}, "start_pos": 709, "start_aa": "Asn", "end_pos": 709, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn709", "evidence": [ { "id": "34004174", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/34004174" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1016/j.celrep.2021.109179", "database": "DOI", "url": "https://doi.org/10.1016/j.celrep.2021.109179" }, { "id": "33077685", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/33077685" }, { "id": "10.1074/mcp.RA120.002295", "database": "DOI", "url": "https://doi.org/10.1074/mcp.RA120.002295" }, { "id": "32366695", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/32366695" }, { "id": "10.1126/science.abb9983", "database": "DOI", "url": "https://doi.org/10.1126/science.abb9983" }, { "id": "32518941", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/32518941" } ], "filter_code": "001000000000000000000.0000000.00000000001000.0100000.1110000000.010111110111111101.00010.01000", "uniprot_canonical_ac": "P0DTC2-1" }, { "glytoucan_ac": "G28541PG", "type": "N-linked;o-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Elastase digestion of purified S protein, providing glycopeptide identification metrics from Byonic search. Expression construct included residues 1\u22121208 of the SARS-CoV-2 S (GenBank: MN908947) with proline substitutions at residues 986 and 987, a \u201cGSAS\u201d substitution at the furin cleavage site (residues 682\u2013685), a C-terminal T4 fibritin trimerization motif, an HRV3C protease cleavage site, a TwinStrepTag and an 8XHisTag.", "icn3d_view": {}, "start_pos": 709, "start_aa": "Asn", "end_pos": 709, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn709", "evidence": [ { "id": "34004174", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/34004174" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1016/j.celrep.2021.109179", "database": "DOI", "url": "https://doi.org/10.1016/j.celrep.2021.109179" } ], "filter_code": "001000000000000000000.xxxxxxx.00000000001000.xxxxxxx.xxxxxxxxxx.xxxxxxxxxxxxxxxxxx.xxxxx.01000", "uniprot_canonical_ac": "P0DTC2-1" }, { "glytoucan_ac": "G31852PQ", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Elastase digestion of purified S protein, providing glycopeptide identification metrics from Byonic search. Expression construct included residues 1\u22121208 of the SARS-CoV-2 S (GenBank: MN908947) with proline substitutions at residues 986 and 987, a \u201cGSAS\u201d substitution at the furin cleavage site (residues 682\u2013685), a C-terminal T4 fibritin trimerization motif, an HRV3C protease cleavage site, a TwinStrepTag and an 8XHisTag.", "icn3d_view": {}, "start_pos": 709, "start_aa": "Asn", "end_pos": 709, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn709", "evidence": [ { "id": "34004174", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/34004174" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1016/j.celrep.2021.109179", "database": "DOI", "url": "https://doi.org/10.1016/j.celrep.2021.109179" }, { "id": "33077685", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/33077685" }, { "id": "10.1074/mcp.RA120.002295", "database": "DOI", "url": "https://doi.org/10.1074/mcp.RA120.002295" }, { "id": "32366695", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/32366695" }, { "id": "10.1126/science.abb9983", "database": "DOI", "url": "https://doi.org/10.1126/science.abb9983" }, { "id": "32518941", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/32518941" } ], "filter_code": "001000000000000000000.xxxxxxx.00010000000000.xxxxxxx.xxxxxxxxxx.xxxxxxxxxxxxxxxxxx.xxxxx.01000", "uniprot_canonical_ac": "P0DTC2-1" }, { "glytoucan_ac": "G39446WN", "type": "N-linked;o-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Elastase digestion of purified S protein, providing glycopeptide identification metrics from Byonic search. Expression construct included residues 1\u22121208 of the SARS-CoV-2 S (GenBank: MN908947) with proline substitutions at residues 986 and 987, a \u201cGSAS\u201d substitution at the furin cleavage site (residues 682\u2013685), a C-terminal T4 fibritin trimerization motif, an HRV3C protease cleavage site, a TwinStrepTag and an 8XHisTag.", "icn3d_view": {}, "start_pos": 709, "start_aa": "Asn", "end_pos": 709, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn709", "evidence": [ { "id": "34004174", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/34004174" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1016/j.celrep.2021.109179", "database": "DOI", "url": "https://doi.org/10.1016/j.celrep.2021.109179" }, { "id": "32518941", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/32518941" } ], "filter_code": "001000000000000000000.0000000.00000000001000.0100000.1100000000.010111100011111101.00010.01000", "uniprot_canonical_ac": "P0DTC2-1" }, { "glytoucan_ac": "G41247ZX", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Elastase digestion of purified S protein, providing glycopeptide identification metrics from Byonic search. Expression construct included residues 1\u22121208 of the SARS-CoV-2 S (GenBank: MN908947) with proline substitutions at residues 986 and 987, a \u201cGSAS\u201d substitution at the furin cleavage site (residues 682\u2013685), a C-terminal T4 fibritin trimerization motif, an HRV3C protease cleavage site, a TwinStrepTag and an 8XHisTag.", "icn3d_view": {}, "start_pos": 709, "start_aa": "Asn", "end_pos": 709, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn709", "evidence": [ { "id": "34004174", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/34004174" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1016/j.celrep.2021.109179", "database": "DOI", "url": "https://doi.org/10.1016/j.celrep.2021.109179" }, { "id": "33077685", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/33077685" }, { "id": "10.1074/mcp.RA120.002295", "database": "DOI", "url": "https://doi.org/10.1074/mcp.RA120.002295" }, { "id": "32366695", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/32366695" }, { "id": "10.1126/science.abb9983", "database": "DOI", "url": "https://doi.org/10.1126/science.abb9983" }, { "id": "32518941", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/32518941" } ], "filter_code": "001000000000000000000.xxxxxxx.00010000000000.xxxxxxx.xxxxxxxxxx.xxxxxxxxxxxxxxxxxx.xxxxx.01000", "uniprot_canonical_ac": "P0DTC2-1" }, { "glytoucan_ac": "G59937CP", "type": "N-linked;o-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "S2P-LC", "icn3d_view": {}, "start_pos": 709, "start_aa": "Asn", "end_pos": 709, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn709", "evidence": [ { "id": "33064451", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/33064451" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1021/acs.analchem.0c03301", "database": "DOI", "url": "https://doi.org/10.1021/acs.analchem.0c03301" }, { "id": "34004174", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/34004174" }, { "id": "10.1016/j.celrep.2021.109179", "database": "DOI", "url": "https://doi.org/10.1016/j.celrep.2021.109179" }, { "id": "32366695", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/32366695" }, { "id": "10.1126/science.abb9983", "database": "DOI", "url": "https://doi.org/10.1126/science.abb9983" } ], "filter_code": "001000000000000000000.0000000.00000000001000.0100000.1110000000.010111100011111101.00010.01000", "uniprot_canonical_ac": "P0DTC2-1" }, { "glytoucan_ac": "G62765YT", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Elastase digestion of purified S protein, providing glycopeptide identification metrics from Byonic search. Expression construct included residues 1\u22121208 of the SARS-CoV-2 S (GenBank: MN908947) with proline substitutions at residues 986 and 987, a \u201cGSAS\u201d substitution at the furin cleavage site (residues 682\u2013685), a C-terminal T4 fibritin trimerization motif, an HRV3C protease cleavage site, a TwinStrepTag and an 8XHisTag.", "icn3d_view": {}, "start_pos": 709, "start_aa": "Asn", "end_pos": 709, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn709", "evidence": [ { "id": "34004174", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/34004174" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1016/j.celrep.2021.109179", "database": "DOI", "url": "https://doi.org/10.1016/j.celrep.2021.109179" }, { "id": "33077685", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/33077685" }, { "id": "10.1074/mcp.RA120.002295", "database": "DOI", "url": "https://doi.org/10.1074/mcp.RA120.002295" }, { "id": "32366695", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/32366695" }, { "id": "10.1126/science.abb9983", "database": "DOI", "url": "https://doi.org/10.1126/science.abb9983" }, { "id": "32518941", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/32518941" } ], "filter_code": "001000000000000000000.xxxxxxx.00010000000000.xxxxxxx.xxxxxxxxxx.xxxxxxxxxxxxxxxxxx.xxxxx.01000", "uniprot_canonical_ac": "P0DTC2-1" }, { "glytoucan_ac": "G67324HN", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Elastase digestion of purified S protein, providing glycopeptide identification metrics from Byonic search. Expression construct included residues 1\u22121208 of the SARS-CoV-2 S (GenBank: MN908947) with proline substitutions at residues 986 and 987, a \u201cGSAS\u201d substitution at the furin cleavage site (residues 682\u2013685), a C-terminal T4 fibritin trimerization motif, an HRV3C protease cleavage site, a TwinStrepTag and an 8XHisTag.", "icn3d_view": {}, "start_pos": 709, "start_aa": "Asn", "end_pos": 709, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn709", "evidence": [ { "id": "34004174", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/34004174" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1016/j.celrep.2021.109179", "database": "DOI", "url": "https://doi.org/10.1016/j.celrep.2021.109179" } ], "filter_code": "001000000000000000000.0000000.00010000000000.0100000.1110100000.010100000001101101.00100.01000", "uniprot_canonical_ac": "P0DTC2-1" }, { "glytoucan_ac": "G68318VE", "type": "N-linked;o-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Elastase digestion of purified S protein, providing glycopeptide identification metrics from Byonic search. Expression construct included residues 1\u22121208 of the SARS-CoV-2 S (GenBank: MN908947) with proline substitutions at residues 986 and 987, a \u201cGSAS\u201d substitution at the furin cleavage site (residues 682\u2013685), a C-terminal T4 fibritin trimerization motif, an HRV3C protease cleavage site, a TwinStrepTag and an 8XHisTag.", "icn3d_view": {}, "start_pos": 709, "start_aa": "Asn", "end_pos": 709, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn709", "evidence": [ { "id": "34004174", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/34004174" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1016/j.celrep.2021.109179", "database": "DOI", "url": "https://doi.org/10.1016/j.celrep.2021.109179" } ], "filter_code": "001000000000000000000.0000000.00000000001000.0100000.1110000000.010111000011111101.00010.01000", "uniprot_canonical_ac": "P0DTC2-1" }, { "glytoucan_ac": "G83555HU", "type": "N-linked;o-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "S2P-LC", "icn3d_view": {}, "start_pos": 709, "start_aa": "Asn", "end_pos": 709, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn709", "evidence": [ { "id": "33064451", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/33064451" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1021/acs.analchem.0c03301", "database": "DOI", "url": "https://doi.org/10.1021/acs.analchem.0c03301" }, { "id": "34004174", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/34004174" }, { "id": "10.1016/j.celrep.2021.109179", "database": "DOI", "url": "https://doi.org/10.1016/j.celrep.2021.109179" } ], "filter_code": "001000000000000000000.0000000.00000000001000.0100000.1110000000.010111100011111101.00010.01000", "uniprot_canonical_ac": "P0DTC2-1" }, { "glytoucan_ac": "G88725PI", "type": "N-linked;o-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Elastase digestion of purified S protein, providing glycopeptide identification metrics from Byonic search. Expression construct included residues 1\u22121208 of the SARS-CoV-2 S (GenBank: MN908947) with proline substitutions at residues 986 and 987, a \u201cGSAS\u201d substitution at the furin cleavage site (residues 682\u2013685), a C-terminal T4 fibritin trimerization motif, an HRV3C protease cleavage site, a TwinStrepTag and an 8XHisTag.", "icn3d_view": {}, "start_pos": 709, "start_aa": "Asn", "end_pos": 709, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn709", "evidence": [ { "id": "34004174", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/34004174" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1016/j.celrep.2021.109179", "database": "DOI", "url": "https://doi.org/10.1016/j.celrep.2021.109179" }, { "id": "32366695", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/32366695" }, { "id": "10.1126/science.abb9983", "database": "DOI", "url": "https://doi.org/10.1126/science.abb9983" } ], "filter_code": "001000000000000000000.0000000.00000000001000.0100000.1110000000.010111100011111101.00010.01000", "uniprot_canonical_ac": "P0DTC2-1" }, { "glytoucan_ac": "G01650EU", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Elastase digestion of purified S protein, providing glycopeptide identification metrics from Byonic search. Expression construct included residues 1\u22121208 of the SARS-CoV-2 S (GenBank: MN908947) with proline substitutions at residues 986 and 987, a \u201cGSAS\u201d substitution at the furin cleavage site (residues 682\u2013685), a C-terminal T4 fibritin trimerization motif, an HRV3C protease cleavage site, a TwinStrepTag and an 8XHisTag.", "icn3d_view": {}, "start_pos": 717, "start_aa": "Asn", "end_pos": 717, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn717", "evidence": [ { "id": "34004174", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/34004174" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1016/j.celrep.2021.109179", "database": "DOI", "url": "https://doi.org/10.1016/j.celrep.2021.109179" }, { "id": "32366695", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/32366695" }, { "id": "10.1126/science.abb9983", "database": "DOI", "url": "https://doi.org/10.1126/science.abb9983" } ], "filter_code": "001000000000000000000.xxxxxxx.00010000000000.xxxxxxx.xxxxxxxxxx.xxxxxxxxxxxxxxxxxx.xxxxx.01000", "uniprot_canonical_ac": "P0DTC2-1" }, { "glytoucan_ac": "G02815KT", "type": "N-linked;o-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "S2P-AC", "icn3d_view": {}, "start_pos": 717, "start_aa": "Asn", "end_pos": 717, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn717", "evidence": [ { "id": "33064451", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/33064451" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1021/acs.analchem.0c03301", "database": "DOI", "url": "https://doi.org/10.1021/acs.analchem.0c03301" }, { "id": "34004174", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/34004174" }, { "id": "10.1016/j.celrep.2021.109179", "database": "DOI", "url": "https://doi.org/10.1016/j.celrep.2021.109179" }, { "id": "32366695", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/32366695" }, { "id": "10.1126/science.abb9983", "database": "DOI", "url": "https://doi.org/10.1126/science.abb9983" }, { "id": "32518941", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/32518941" } ], "filter_code": "001000000000000000000.xxxxxxx.00000000001000.xxxxxxx.xxxxxxxxxx.xxxxxxxxxxxxxxxxxx.xxxxx.01000", "uniprot_canonical_ac": "P0DTC2-1" }, { "glytoucan_ac": "G10339FR", "type": "N-linked;o-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Elastase digestion of purified S protein, providing glycopeptide identification metrics from Byonic search. Expression construct included residues 1\u22121208 of the SARS-CoV-2 S (GenBank: MN908947) with proline substitutions at residues 986 and 987, a \u201cGSAS\u201d substitution at the furin cleavage site (residues 682\u2013685), a C-terminal T4 fibritin trimerization motif, an HRV3C protease cleavage site, a TwinStrepTag and an 8XHisTag.", "icn3d_view": {}, "start_pos": 717, "start_aa": "Asn", "end_pos": 717, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn717", "evidence": [ { "id": "34004174", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/34004174" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1016/j.celrep.2021.109179", "database": "DOI", "url": "https://doi.org/10.1016/j.celrep.2021.109179" }, { "id": "32366695", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/32366695" }, { "id": "10.1126/science.abb9983", "database": "DOI", "url": "https://doi.org/10.1126/science.abb9983" }, { "id": "32518941", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/32518941" } ], "filter_code": "001000000000000000000.0000000.00000000001000.0100000.1110000000.010111100111111100.00010.01000", "uniprot_canonical_ac": "P0DTC2-1" }, { "glytoucan_ac": "G10486CT", "type": "N-linked;o-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Elastase digestion of purified S protein, providing glycopeptide identification metrics from Byonic search. Expression construct included residues 1\u22121208 of the SARS-CoV-2 S (GenBank: MN908947) with proline substitutions at residues 986 and 987, a \u201cGSAS\u201d substitution at the furin cleavage site (residues 682\u2013685), a C-terminal T4 fibritin trimerization motif, an HRV3C protease cleavage site, a TwinStrepTag and an 8XHisTag.", "icn3d_view": {}, "start_pos": 717, "start_aa": "Asn", "end_pos": 717, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn717", "evidence": [ { "id": "34004174", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/34004174" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1016/j.celrep.2021.109179", "database": "DOI", "url": "https://doi.org/10.1016/j.celrep.2021.109179" }, { "id": "32366695", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/32366695" }, { "id": "10.1126/science.abb9983", "database": "DOI", "url": "https://doi.org/10.1126/science.abb9983" } ], "filter_code": "001000000000000000000.xxxxxxx.00000000001000.xxxxxxx.xxxxxxxxxx.xxxxxxxxxxxxxxxxxx.xxxxx.01000", "uniprot_canonical_ac": "P0DTC2-1" }, { "glytoucan_ac": "G15486FH", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Elastase digestion of purified S protein, providing glycopeptide identification metrics from Byonic search. Expression construct included residues 1\u22121208 of the SARS-CoV-2 S (GenBank: MN908947) with proline substitutions at residues 986 and 987, a \u201cGSAS\u201d substitution at the furin cleavage site (residues 682\u2013685), a C-terminal T4 fibritin trimerization motif, an HRV3C protease cleavage site, a TwinStrepTag and an 8XHisTag.", "icn3d_view": {}, "start_pos": 717, "start_aa": "Asn", "end_pos": 717, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn717", "evidence": [ { "id": "34004174", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/34004174" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1016/j.celrep.2021.109179", "database": "DOI", "url": "https://doi.org/10.1016/j.celrep.2021.109179" }, { "id": "32366695", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/32366695" }, { "id": "10.1126/science.abb9983", "database": "DOI", "url": "https://doi.org/10.1126/science.abb9983" }, { "id": "32518941", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/32518941" } ], "filter_code": "001000000000000000000.0000000.00010000000000.0100000.1110000000.010111100011111101.00010.01000", "uniprot_canonical_ac": "P0DTC2-1" }, { "glytoucan_ac": "G28541PG", "type": "N-linked;o-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Elastase digestion of purified S protein, providing glycopeptide identification metrics from Byonic search. Expression construct included residues 1\u22121208 of the SARS-CoV-2 S (GenBank: MN908947) with proline substitutions at residues 986 and 987, a \u201cGSAS\u201d substitution at the furin cleavage site (residues 682\u2013685), a C-terminal T4 fibritin trimerization motif, an HRV3C protease cleavage site, a TwinStrepTag and an 8XHisTag.", "icn3d_view": {}, "start_pos": 717, "start_aa": "Asn", "end_pos": 717, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn717", "evidence": [ { "id": "34004174", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/34004174" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1016/j.celrep.2021.109179", "database": "DOI", "url": "https://doi.org/10.1016/j.celrep.2021.109179" }, { "id": "32366695", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/32366695" }, { "id": "10.1126/science.abb9983", "database": "DOI", "url": "https://doi.org/10.1126/science.abb9983" } ], "filter_code": "001000000000000000000.xxxxxxx.00000000001000.xxxxxxx.xxxxxxxxxx.xxxxxxxxxxxxxxxxxx.xxxxx.01000", "uniprot_canonical_ac": "P0DTC2-1" }, { "glytoucan_ac": "G31852PQ", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Elastase digestion of purified S protein, providing glycopeptide identification metrics from Byonic search. Expression construct included residues 1\u22121208 of the SARS-CoV-2 S (GenBank: MN908947) with proline substitutions at residues 986 and 987, a \u201cGSAS\u201d substitution at the furin cleavage site (residues 682\u2013685), a C-terminal T4 fibritin trimerization motif, an HRV3C protease cleavage site, a TwinStrepTag and an 8XHisTag.", "icn3d_view": {}, "start_pos": 717, "start_aa": "Asn", "end_pos": 717, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn717", "evidence": [ { "id": "34004174", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/34004174" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1016/j.celrep.2021.109179", "database": "DOI", "url": "https://doi.org/10.1016/j.celrep.2021.109179" }, { "id": "32366695", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/32366695" }, { "id": "10.1126/science.abb9983", "database": "DOI", "url": "https://doi.org/10.1126/science.abb9983" }, { "id": "32518941", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/32518941" } ], "filter_code": "001000000000000000000.xxxxxxx.00010000000000.xxxxxxx.xxxxxxxxxx.xxxxxxxxxxxxxxxxxx.xxxxx.01000", "uniprot_canonical_ac": "P0DTC2-1" }, { "glytoucan_ac": "G37399XV", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Elastase digestion of purified S protein, providing glycopeptide identification metrics from Byonic search. Expression construct included residues 1\u22121208 of the SARS-CoV-2 S (GenBank: MN908947) with proline substitutions at residues 986 and 987, a \u201cGSAS\u201d substitution at the furin cleavage site (residues 682\u2013685), a C-terminal T4 fibritin trimerization motif, an HRV3C protease cleavage site, a TwinStrepTag and an 8XHisTag.", "icn3d_view": {}, "start_pos": 717, "start_aa": "Asn", "end_pos": 717, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn717", "evidence": [ { "id": "34004174", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/34004174" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1016/j.celrep.2021.109179", "database": "DOI", "url": "https://doi.org/10.1016/j.celrep.2021.109179" }, { "id": "32366695", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/32366695" }, { "id": "10.1126/science.abb9983", "database": "DOI", "url": "https://doi.org/10.1126/science.abb9983" } ], "filter_code": "001000000000000000000.xxxxxxx.00010000000000.xxxxxxx.xxxxxxxxxx.xxxxxxxxxxxxxxxxxx.xxxxx.01000", "uniprot_canonical_ac": "P0DTC2-1" }, { "glytoucan_ac": "G39446WN", "type": "N-linked;o-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Elastase digestion of purified S protein, providing glycopeptide identification metrics from Byonic search. Expression construct included residues 1\u22121208 of the SARS-CoV-2 S (GenBank: MN908947) with proline substitutions at residues 986 and 987, a \u201cGSAS\u201d substitution at the furin cleavage site (residues 682\u2013685), a C-terminal T4 fibritin trimerization motif, an HRV3C protease cleavage site, a TwinStrepTag and an 8XHisTag.", "icn3d_view": {}, "start_pos": 717, "start_aa": "Asn", "end_pos": 717, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn717", "evidence": [ { "id": "34004174", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/34004174" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1016/j.celrep.2021.109179", "database": "DOI", "url": "https://doi.org/10.1016/j.celrep.2021.109179" }, { "id": "32366695", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/32366695" }, { "id": "10.1126/science.abb9983", "database": "DOI", "url": "https://doi.org/10.1126/science.abb9983" }, { "id": "32518941", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/32518941" } ], "filter_code": "001000000000000000000.0000000.00000000001000.0100000.1100000000.010111100011111101.00010.01000", "uniprot_canonical_ac": "P0DTC2-1" }, { "glytoucan_ac": "G41247ZX", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Elastase digestion of purified S protein, providing glycopeptide identification metrics from Byonic search. Expression construct included residues 1\u22121208 of the SARS-CoV-2 S (GenBank: MN908947) with proline substitutions at residues 986 and 987, a \u201cGSAS\u201d substitution at the furin cleavage site (residues 682\u2013685), a C-terminal T4 fibritin trimerization motif, an HRV3C protease cleavage site, a TwinStrepTag and an 8XHisTag.", "icn3d_view": {}, "start_pos": 717, "start_aa": "Asn", "end_pos": 717, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn717", "evidence": [ { "id": "34004174", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/34004174" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1016/j.celrep.2021.109179", "database": "DOI", "url": "https://doi.org/10.1016/j.celrep.2021.109179" }, { "id": "32366695", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/32366695" }, { "id": "10.1126/science.abb9983", "database": "DOI", "url": "https://doi.org/10.1126/science.abb9983" }, { "id": "32518941", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/32518941" } ], "filter_code": "001000000000000000000.xxxxxxx.00010000000000.xxxxxxx.xxxxxxxxxx.xxxxxxxxxxxxxxxxxx.xxxxx.01000", "uniprot_canonical_ac": "P0DTC2-1" }, { "glytoucan_ac": "G57776ZU", "type": "N-linked;o-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Elastase digestion of purified S protein, providing glycopeptide identification metrics from Byonic search. Expression construct included residues 1\u22121208 of the SARS-CoV-2 S (GenBank: MN908947) with proline substitutions at residues 986 and 987, a \u201cGSAS\u201d substitution at the furin cleavage site (residues 682\u2013685), a C-terminal T4 fibritin trimerization motif, an HRV3C protease cleavage site, a TwinStrepTag and an 8XHisTag.", "icn3d_view": {}, "start_pos": 717, "start_aa": "Asn", "end_pos": 717, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn717", "evidence": [ { "id": "34004174", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/34004174" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1016/j.celrep.2021.109179", "database": "DOI", "url": "https://doi.org/10.1016/j.celrep.2021.109179" } ], "filter_code": "001000000000000000000.xxxxxxx.00000000001000.xxxxxxx.xxxxxxxxxx.xxxxxxxxxxxxxxxxxx.xxxxx.01000", "uniprot_canonical_ac": "P0DTC2-1" }, { "glytoucan_ac": "G59937CP", "type": "N-linked;o-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Elastase digestion of purified S protein, providing glycopeptide identification metrics from Byonic search. Expression construct included residues 1\u22121208 of the SARS-CoV-2 S (GenBank: MN908947) with proline substitutions at residues 986 and 987, a \u201cGSAS\u201d substitution at the furin cleavage site (residues 682\u2013685), a C-terminal T4 fibritin trimerization motif, an HRV3C protease cleavage site, a TwinStrepTag and an 8XHisTag.", "icn3d_view": {}, "start_pos": 717, "start_aa": "Asn", "end_pos": 717, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn717", "evidence": [ { "id": "34004174", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/34004174" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1016/j.celrep.2021.109179", "database": "DOI", "url": "https://doi.org/10.1016/j.celrep.2021.109179" }, { "id": "32366695", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/32366695" }, { "id": "10.1126/science.abb9983", "database": "DOI", "url": "https://doi.org/10.1126/science.abb9983" } ], "filter_code": "001000000000000000000.0000000.00000000001000.0100000.1110000000.010111100011111101.00010.01000", "uniprot_canonical_ac": "P0DTC2-1" }, { "glytoucan_ac": "G65184UU", "type": "N-linked;o-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Elastase digestion of purified S protein, providing glycopeptide identification metrics from Byonic search. Expression construct included residues 1\u22121208 of the SARS-CoV-2 S (GenBank: MN908947) with proline substitutions at residues 986 and 987, a \u201cGSAS\u201d substitution at the furin cleavage site (residues 682\u2013685), a C-terminal T4 fibritin trimerization motif, an HRV3C protease cleavage site, a TwinStrepTag and an 8XHisTag.", "icn3d_view": {}, "start_pos": 717, "start_aa": "Asn", "end_pos": 717, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn717", "evidence": [ { "id": "34004174", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/34004174" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1016/j.celrep.2021.109179", "database": "DOI", "url": "https://doi.org/10.1016/j.celrep.2021.109179" } ], "filter_code": "001000000000000000000.xxxxxxx.00000000001000.xxxxxxx.xxxxxxxxxx.xxxxxxxxxxxxxxxxxx.xxxxx.01000", "uniprot_canonical_ac": "P0DTC2-1" }, { "glytoucan_ac": "G67324HN", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Elastase digestion of purified S protein, providing glycopeptide identification metrics from Byonic search. Expression construct included residues 1\u22121208 of the SARS-CoV-2 S (GenBank: MN908947) with proline substitutions at residues 986 and 987, a \u201cGSAS\u201d substitution at the furin cleavage site (residues 682\u2013685), a C-terminal T4 fibritin trimerization motif, an HRV3C protease cleavage site, a TwinStrepTag and an 8XHisTag.", "icn3d_view": {}, "start_pos": 717, "start_aa": "Asn", "end_pos": 717, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn717", "evidence": [ { "id": "34004174", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/34004174" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1016/j.celrep.2021.109179", "database": "DOI", "url": "https://doi.org/10.1016/j.celrep.2021.109179" } ], "filter_code": "001000000000000000000.0000000.00010000000000.0100000.1110100000.010100000001101101.00100.01000", "uniprot_canonical_ac": "P0DTC2-1" }, { "glytoucan_ac": "G83555HU", "type": "N-linked;o-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Elastase digestion of purified S protein, providing glycopeptide identification metrics from Byonic search. Expression construct included residues 1\u22121208 of the SARS-CoV-2 S (GenBank: MN908947) with proline substitutions at residues 986 and 987, a \u201cGSAS\u201d substitution at the furin cleavage site (residues 682\u2013685), a C-terminal T4 fibritin trimerization motif, an HRV3C protease cleavage site, a TwinStrepTag and an 8XHisTag.", "icn3d_view": {}, "start_pos": 717, "start_aa": "Asn", "end_pos": 717, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn717", "evidence": [ { "id": "34004174", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/34004174" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1016/j.celrep.2021.109179", "database": "DOI", "url": "https://doi.org/10.1016/j.celrep.2021.109179" }, { "id": "32366695", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/32366695" }, { "id": "10.1126/science.abb9983", "database": "DOI", "url": "https://doi.org/10.1126/science.abb9983" } ], "filter_code": "001000000000000000000.0000000.00000000001000.0100000.1110000000.010111100011111101.00010.01000", "uniprot_canonical_ac": "P0DTC2-1" }, { "glytoucan_ac": "G92050GC", "type": "N-linked;o-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Elastase digestion of purified S protein, providing glycopeptide identification metrics from Byonic search. Expression construct included residues 1\u22121208 of the SARS-CoV-2 S (GenBank: MN908947) with proline substitutions at residues 986 and 987, a \u201cGSAS\u201d substitution at the furin cleavage site (residues 682\u2013685), a C-terminal T4 fibritin trimerization motif, an HRV3C protease cleavage site, a TwinStrepTag and an 8XHisTag.", "icn3d_view": {}, "start_pos": 717, "start_aa": "Asn", "end_pos": 717, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn717", "evidence": [ { "id": "34004174", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/34004174" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1016/j.celrep.2021.109179", "database": "DOI", "url": "https://doi.org/10.1016/j.celrep.2021.109179" }, { "id": "32366695", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/32366695" }, { "id": "10.1126/science.abb9983", "database": "DOI", "url": "https://doi.org/10.1126/science.abb9983" }, { "id": "32518941", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/32518941" } ], "filter_code": "001000000000000000000.xxxxxxx.00000000001000.xxxxxxx.xxxxxxxxxx.xxxxxxxxxxxxxxxxxx.xxxxx.01000", "uniprot_canonical_ac": "P0DTC2-1" }, { "glytoucan_ac": "G19379ID", "type": "N-linked;o-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Elastase digestion of purified S protein, providing glycopeptide identification metrics from Byonic search. Expression construct included residues 1\u22121208 of the SARS-CoV-2 S (GenBank: MN908947) with proline substitutions at residues 986 and 987, a \u201cGSAS\u201d substitution at the furin cleavage site (residues 682\u2013685), a C-terminal T4 fibritin trimerization motif, an HRV3C protease cleavage site, a TwinStrepTag and an 8XHisTag.", "icn3d_view": {}, "start_pos": 74, "start_aa": "Asn", "end_pos": 74, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn74", "evidence": [ { "id": "34004174", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/34004174" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1016/j.celrep.2021.109179", "database": "DOI", "url": "https://doi.org/10.1016/j.celrep.2021.109179" }, { "id": "32366695", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/32366695" }, { "id": "10.1126/science.abb9983", "database": "DOI", "url": "https://doi.org/10.1126/science.abb9983" } ], "filter_code": "001000000000000000000.0000000.00000000001000.0100000.1110000000.010111000001111101.00010.01000", "uniprot_canonical_ac": "P0DTC2-1" }, { "glytoucan_ac": "G25987BV", "type": "N-linked;o-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "S2P-AC", "icn3d_view": {}, "start_pos": 74, "start_aa": "Asn", "end_pos": 74, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn74", "evidence": [ { "id": "33064451", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/33064451" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1021/acs.analchem.0c03301", "database": "DOI", "url": "https://doi.org/10.1021/acs.analchem.0c03301" }, { "id": "34004174", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/34004174" }, { "id": "10.1016/j.celrep.2021.109179", "database": "DOI", "url": "https://doi.org/10.1016/j.celrep.2021.109179" }, { "id": "32366695", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/32366695" }, { "id": "10.1126/science.abb9983", "database": "DOI", "url": "https://doi.org/10.1126/science.abb9983" }, { "id": "32363391", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/32363391" }, { "id": "10.1101/2020.04.01.020966", "database": "DOI", "url": "https://doi.org/10.1101/2020.04.01.020966" } ], "filter_code": "001000000000000000000.0000000.00000000001000.0100000.1110000000.010111110111111101.00010.01000", "uniprot_canonical_ac": "P0DTC2-1" }, { "glytoucan_ac": "G59540CB", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Elastase digestion of purified S protein, providing glycopeptide identification metrics from Byonic search. Expression construct included residues 1\u22121208 of the SARS-CoV-2 S (GenBank: MN908947) with proline substitutions at residues 986 and 987, a \u201cGSAS\u201d substitution at the furin cleavage site (residues 682\u2013685), a C-terminal T4 fibritin trimerization motif, an HRV3C protease cleavage site, a TwinStrepTag and an 8XHisTag.", "icn3d_view": {}, "start_pos": 74, "start_aa": "Asn", "end_pos": 74, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn74", "evidence": [ { "id": "34004174", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/34004174" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1016/j.celrep.2021.109179", "database": "DOI", "url": "https://doi.org/10.1016/j.celrep.2021.109179" }, { "id": "32366695", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/32366695" }, { "id": "10.1126/science.abb9983", "database": "DOI", "url": "https://doi.org/10.1126/science.abb9983" } ], "filter_code": "001000000000000000000.0000000.00010000000000.0010000.1110000000.010001000001101100.00010.01000", "uniprot_canonical_ac": "P0DTC2-1" }, { "glytoucan_ac": "G59937CP", "type": "N-linked;o-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "S1-AC", "icn3d_view": {}, "start_pos": 74, "start_aa": "Asn", "end_pos": 74, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn74", "evidence": [ { "id": "33064451", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/33064451" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1021/acs.analchem.0c03301", "database": "DOI", "url": "https://doi.org/10.1021/acs.analchem.0c03301" }, { "id": "34004174", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/34004174" }, { "id": "10.1016/j.celrep.2021.109179", "database": "DOI", "url": "https://doi.org/10.1016/j.celrep.2021.109179" }, { "id": "32366695", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/32366695" }, { "id": "10.1126/science.abb9983", "database": "DOI", "url": "https://doi.org/10.1126/science.abb9983" } ], "filter_code": "001000000000000000000.0000000.00000000001000.0100000.1110000000.010111100011111101.00010.01000", "uniprot_canonical_ac": "P0DTC2-1" }, { "glytoucan_ac": "G68318VE", "type": "N-linked;o-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "S2P-AC", "icn3d_view": {}, "start_pos": 74, "start_aa": "Asn", "end_pos": 74, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn74", "evidence": [ { "id": "33064451", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/33064451" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1021/acs.analchem.0c03301", "database": "DOI", "url": "https://doi.org/10.1021/acs.analchem.0c03301" }, { "id": "34004174", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/34004174" }, { "id": "10.1016/j.celrep.2021.109179", "database": "DOI", "url": "https://doi.org/10.1016/j.celrep.2021.109179" }, { "id": "32366695", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/32366695" }, { "id": "10.1126/science.abb9983", "database": "DOI", "url": "https://doi.org/10.1126/science.abb9983" } ], "filter_code": "001000000000000000000.0000000.00000000001000.0100000.1110000000.010111000011111101.00010.01000", "uniprot_canonical_ac": "P0DTC2-1" }, { "glytoucan_ac": "G88725PI", "type": "N-linked;o-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "S2P-AC", "icn3d_view": {}, "start_pos": 74, "start_aa": "Asn", "end_pos": 74, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn74", "evidence": [ { "id": "33064451", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/33064451" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1021/acs.analchem.0c03301", "database": "DOI", "url": "https://doi.org/10.1021/acs.analchem.0c03301" }, { "id": "34004174", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/34004174" }, { "id": "10.1016/j.celrep.2021.109179", "database": "DOI", "url": "https://doi.org/10.1016/j.celrep.2021.109179" }, { "id": "32366695", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/32366695" }, { "id": "10.1126/science.abb9983", "database": "DOI", "url": "https://doi.org/10.1126/science.abb9983" } ], "filter_code": "001000000000000000000.0000000.00000000001000.0100000.1110000000.010111100011111101.00010.01000", "uniprot_canonical_ac": "P0DTC2-1" }, { "glytoucan_ac": "G01650EU", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "S2P-AC", "icn3d_view": {}, "start_pos": 801, "start_aa": "Asn", "end_pos": 801, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn801", "evidence": [ { "id": "33064451", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/33064451" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1021/acs.analchem.0c03301", "database": "DOI", "url": "https://doi.org/10.1021/acs.analchem.0c03301" }, { "id": "34004174", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/34004174" }, { "id": "10.1016/j.celrep.2021.109179", "database": "DOI", "url": "https://doi.org/10.1016/j.celrep.2021.109179" } ], "filter_code": "001000000000000000000.xxxxxxx.00010000000000.xxxxxxx.xxxxxxxxxx.xxxxxxxxxxxxxxxxxx.xxxxx.01000", 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"uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 50 } ], "sort_fields": [ "glytoucan_ac" ] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 287 }, { "field": "total_sites", "count": 22 }, { "field": "n_linked_sites", "count": 19 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 19 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 23 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 22 }, { "field": "exact_n_linked_sites", "count": 19 }, { "field": "exact_n_linked_glycan_sites", "count": 19 }, { "field": "exact_n_linked_glycans", "count": 23 }, { "field": "exact_n_linked;o_linked_sites", "count": 22 }, { "field": "exact_n_linked;o_linked_glycan_sites", "count": 22 }, { "field": "exact_n_linked;o_linked_glycans", "count": 27 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl", "filter_code", "uniprot_canonical_ac" ] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 287 }, { "field": "total_sites", "count": 22 }, { "field": "n_linked_sites", "count": 19 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 19 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 23 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 22 }, { "field": "exact_n_linked_sites", "count": 19 }, { "field": "exact_n_linked_glycan_sites", "count": 19 }, { "field": "exact_n_linked_glycans", "count": 23 }, { "field": "exact_n_linked;o_linked_sites", "count": 22 }, { "field": "exact_n_linked;o_linked_glycan_sites", "count": 22 }, { "field": "exact_n_linked;o_linked_glycans", "count": 27 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl", "filter_code", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Comprehensive Analysis of the Glycan Complement of SARS-CoV-2 Spike Proteins Using Signature Ions-Triggered Electron-Transfer/Higher-Energy Collisional Dissociation (EThcD) Mass Spectrometry", "journal": "Anal. Chem.", "date": "2020", "authors": "Wang D., Baudys J., Bundy J.L., Solano M., Keppel T., Barr J.R.", "reference": { "type": "DOI", "id": "10.1021/acs.analchem.0c03301", "url": "https://doi.org/10.1021/acs.analchem.0c03301" }, "referenced_glycans": [ { "glytoucan_ac": "G59937CP" }, { "glytoucan_ac": "G88725PI" }, { "glytoucan_ac": "G89009DQ" }, { "glytoucan_ac": "G59626AS" }, { "glytoucan_ac": "G06853GH" }, { "glytoucan_ac": "G82364UA" }, { "glytoucan_ac": "G83014KM" }, { "glytoucan_ac": "G27126ED" }, { "glytoucan_ac": "G72787SB" }, { "glytoucan_ac": "G72791KH" }, { "glytoucan_ac": "G20956ZV" }, { "glytoucan_ac": "G95678HJ" }, { "glytoucan_ac": "G95835XS" }, { "glytoucan_ac": "G35029YA" }, { "glytoucan_ac": "G83646BJ" }, { "glytoucan_ac": "G40926MX" }, { "glytoucan_ac": "G43669FQ" }, { "glytoucan_ac": "G43734MM" }, { "glytoucan_ac": "G43769HG" }, { "glytoucan_ac": "G44211QA" }, { "glytoucan_ac": "G44753VC" }, { "glytoucan_ac": "G25079LO" }, { "glytoucan_ac": "G25987BV" }, { 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"glytoucan_ac": "G60033FS" }, { "glytoucan_ac": "G56610MH" }, { "glytoucan_ac": "G57317CE" }, { "glytoucan_ac": "G02886BB" }, { "glytoucan_ac": "G93579XB" }, { "glytoucan_ac": "G94917XT" }, { "glytoucan_ac": "G95865ZB" }, { "glytoucan_ac": "G08293MJ" }, { "glytoucan_ac": "G09528DL" }, { "glytoucan_ac": "G49955PK" }, { "glytoucan_ac": "G86752LQ" }, { "glytoucan_ac": "G88374WZ" }, { "glytoucan_ac": "G01650EU" }, { "glytoucan_ac": "G72790NZ" }, { "glytoucan_ac": "G03574QJ" }, { "glytoucan_ac": "G55382TU" }, { "glytoucan_ac": "G28681TP" }, { "glytoucan_ac": "G00912UN" }, { "glytoucan_ac": "G49739MP" }, { "glytoucan_ac": "G49906RN" }, { "glytoucan_ac": "G10339FR" }, { "glytoucan_ac": "G11115RO" }, { "glytoucan_ac": "G65184UU" }, { "glytoucan_ac": "G85144OK" }, { "glytoucan_ac": "G85282JO" }, { "glytoucan_ac": "G85740DB" }, { "glytoucan_ac": "G86182NS" }, { "glytoucan_ac": "G44953PJ" }, { "glytoucan_ac": "G45504EY" }, { "glytoucan_ac": "G39446WN" }, { "glytoucan_ac": "G62765YT" }, { 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} ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 15 }, { "field": "total_sites", "count": 15 }, { "field": "n_linked_sites", "count": 15 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 15 }, { "field": "exact_n_linked_sites", "count": 15 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl", "filter_code", "uniprot_canonical_ac", "icn3d_view.label", "icn3d_view.url", "mining_tool" ] } ] }, { "title": "Site-specific N-glycosylation Characterization of Recombinant SARS-CoV-2 Spike Proteins", "journal": "Mol Cell Proteomics", "date": "2021", "authors": "Zhang Y., Zhao W., Mao Y., Chen Y., Wang S., Zhong Y., Su T., Gong M., Du D., Lu X., Cheng J., Yang H.", "reference": { "type": "DOI", "id": "10.1074/mcp.RA120.002295", "url": "https://doi.org/10.1074/mcp.RA120.002295" }, "referenced_glycans": [ { "glytoucan_ac": "G59937CP" }, { "glytoucan_ac": "G82364UA" }, { "glytoucan_ac": "G27622TD" }, { "glytoucan_ac": "G14368ET" }, { "glytoucan_ac": "G72787SB" }, { "glytoucan_ac": "G73430PD" }, { "glytoucan_ac": "G20956ZV" }, { "glytoucan_ac": "G35029YA" }, { "glytoucan_ac": "G44211QA" }, { "glytoucan_ac": "G25079LO" }, { "glytoucan_ac": "G25987BV" }, { "glytoucan_ac": "G92050GC" }, { "glytoucan_ac": "G02815KT" }, { "glytoucan_ac": "G31852PQ" }, { "glytoucan_ac": "G37659EV" }, { "glytoucan_ac": "G10486CT" }, { "glytoucan_ac": "G28541PG" }, { "glytoucan_ac": "G67367OT" }, { "glytoucan_ac": "G80920RR" }, { "glytoucan_ac": "G80475RE" }, { "glytoucan_ac": "G80735OA" }, { "glytoucan_ac": "G53434XO" }, { "glytoucan_ac": 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Patient reference C459.", "icn3d_view": {}, "start_pos": 343, "start_aa": "Asn", "end_pos": 343, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn343", "evidence": [ { "id": "34004174", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/34004174" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1016/j.celrep.2021.109179", "database": "DOI", "url": "https://doi.org/10.1016/j.celrep.2021.109179" }, { "id": "33077685", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/33077685" }, { "id": "10.1074/mcp.RA120.002295", "database": "DOI", "url": "https://doi.org/10.1074/mcp.RA120.002295" } ], "filter_code": "001000000000000000000.0000000.00000000001000.0100000.1110000000.010111110111111101.00010.01100", "uniprot_canonical_ac": "P0DTC2-1" }, { "glytoucan_ac": "G21726WW", "type": "N-linked;o-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Identified intact N-glycopeptides with noted commentS-T-before-R2", "icn3d_view": {}, "start_pos": 343, "start_aa": "Asn", "end_pos": 343, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn343", "evidence": [ { "id": "33077685", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/33077685" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1074/mcp.RA120.002295", "database": "DOI", "url": "https://doi.org/10.1074/mcp.RA120.002295" } ], "filter_code": "001000000000000000000.0000000.00000000001000.0100000.1110000000.010000100001111100.00010.01100", "uniprot_canonical_ac": "P0DTC2-1" }, { "glytoucan_ac": "G28681TP", "type": "N-linked;o-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Patient immunopeptidomic samples. Antibody L243. Patient reference C459.", "icn3d_view": {}, "start_pos": 343, "start_aa": "Asn", "end_pos": 343, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn343", "evidence": [ { "id": "34004174", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/34004174" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1016/j.celrep.2021.109179", "database": "DOI", "url": "https://doi.org/10.1016/j.celrep.2021.109179" }, { "id": "33077685", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/33077685" }, { "id": "10.1074/mcp.RA120.002295", "database": "DOI", "url": "https://doi.org/10.1074/mcp.RA120.002295" }, { "id": "10.1101/2020.03.28.013276", "database": "DOI", "url": "https://doi.org/10.1101/2020.03.28.013276" } ], "filter_code": "001000000000000000000.xxxxxxx.00000000001000.xxxxxxx.xxxxxxxxxx.xxxxxxxxxxxxxxxxxx.xxxxx.01100", "uniprot_canonical_ac": "P0DTC2-1" }, { "glytoucan_ac": "G28997IA", "type": "N-linked;o-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Identified intact N-glycopeptides with noted commentS-TG-before-R1", "icn3d_view": {}, "start_pos": 343, "start_aa": "Asn", "end_pos": 343, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn343", "evidence": [ { "id": "33077685", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/33077685" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1074/mcp.RA120.002295", "database": "DOI", "url": "https://doi.org/10.1074/mcp.RA120.002295" } ], "filter_code": "001000000000000000000.0000000.00000000001000.0100000.1110000000.000000100001110001.00010.01100", "uniprot_canonical_ac": "P0DTC2-1" }, { "glytoucan_ac": "G31852PQ", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Elastase digestion of purified S protein, providing glycopeptide identification metrics from Byonic search. Expression construct included residues 1\u22121208 of the SARS-CoV-2 S (GenBank: MN908947) with proline substitutions at residues 986 and 987, a \u201cGSAS\u201d substitution at the furin cleavage site (residues 682\u2013685), a C-terminal T4 fibritin trimerization motif, an HRV3C protease cleavage site, a TwinStrepTag and an 8XHisTag.", "icn3d_view": {}, "start_pos": 343, "start_aa": "Asn", "end_pos": 343, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn343", "evidence": [ { "id": "34004174", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/34004174" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1016/j.celrep.2021.109179", "database": "DOI", "url": "https://doi.org/10.1016/j.celrep.2021.109179" }, { "id": "33077685", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/33077685" }, { "id": "10.1074/mcp.RA120.002295", "database": "DOI", "url": "https://doi.org/10.1074/mcp.RA120.002295" }, { "id": "32363391", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/32363391" }, { "id": "10.1101/2020.04.01.020966", "database": "DOI", "url": "https://doi.org/10.1101/2020.04.01.020966" }, { "id": "10.1101/2020.03.28.013276", "database": "DOI", "url": "https://doi.org/10.1101/2020.03.28.013276" } ], "filter_code": "001000000000000000000.xxxxxxx.00010000000000.xxxxxxx.xxxxxxxxxx.xxxxxxxxxxxxxxxxxx.xxxxx.01100", "uniprot_canonical_ac": "P0DTC2-1" }, { "glytoucan_ac": "G39446WN", "type": "N-linked;o-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Elastase digestion of purified S protein, providing glycopeptide identification metrics from Byonic search. Expression construct included residues 1\u22121208 of the SARS-CoV-2 S (GenBank: MN908947) with proline substitutions at residues 986 and 987, a \u201cGSAS\u201d substitution at the furin cleavage site (residues 682\u2013685), a C-terminal T4 fibritin trimerization motif, an HRV3C protease cleavage site, a TwinStrepTag and an 8XHisTag.", "icn3d_view": {}, "start_pos": 343, "start_aa": "Asn", "end_pos": 343, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn343", "evidence": [ { "id": "34004174", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/34004174" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1016/j.celrep.2021.109179", "database": "DOI", "url": "https://doi.org/10.1016/j.celrep.2021.109179" }, { "id": "33077685", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/33077685" }, { "id": "10.1074/mcp.RA120.002295", "database": "DOI", "url": "https://doi.org/10.1074/mcp.RA120.002295" }, { "id": "10.1101/2020.03.28.013276", "database": "DOI", "url": "https://doi.org/10.1101/2020.03.28.013276" } ], "filter_code": "001000000000000000000.0000000.00000000001000.0100000.1100000000.010111100011111101.00010.01100", "uniprot_canonical_ac": "P0DTC2-1" }, { "glytoucan_ac": "G41247ZX", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Elastase digestion of purified S protein, providing glycopeptide identification metrics from Byonic search. Expression construct included residues 1\u22121208 of the SARS-CoV-2 S (GenBank: MN908947) with proline substitutions at residues 986 and 987, a \u201cGSAS\u201d substitution at the furin cleavage site (residues 682\u2013685), a C-terminal T4 fibritin trimerization motif, an HRV3C protease cleavage site, a TwinStrepTag and an 8XHisTag.", "icn3d_view": {}, "start_pos": 343, "start_aa": "Asn", "end_pos": 343, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn343", "evidence": [ { "id": "34004174", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/34004174" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1016/j.celrep.2021.109179", "database": "DOI", "url": "https://doi.org/10.1016/j.celrep.2021.109179" }, { "id": "33077685", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/33077685" }, { "id": "10.1074/mcp.RA120.002295", "database": "DOI", "url": "https://doi.org/10.1074/mcp.RA120.002295" }, { "id": "32363391", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/32363391" }, { "id": "10.1101/2020.04.01.020966", "database": "DOI", "url": "https://doi.org/10.1101/2020.04.01.020966" }, { "id": "10.1101/2020.03.28.013276", "database": "DOI", "url": "https://doi.org/10.1101/2020.03.28.013276" } ], "filter_code": "001000000000000000000.xxxxxxx.00010000000000.xxxxxxx.xxxxxxxxxx.xxxxxxxxxxxxxxxxxx.xxxxx.01100", "uniprot_canonical_ac": "P0DTC2-1" }, { "glytoucan_ac": "G51210WZ", "type": "N-linked;o-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Identified intact N-glycopeptides with noted commentS-TG-before-R1", "icn3d_view": {}, "start_pos": 343, "start_aa": "Asn", "end_pos": 343, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn343", "evidence": [ { "id": "33077685", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/33077685" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1074/mcp.RA120.002295", "database": "DOI", "url": "https://doi.org/10.1074/mcp.RA120.002295" } ], "filter_code": "001000000000000000000.0000000.00000000001000.0100000.1110000000.110000100011111100.00010.01100", "uniprot_canonical_ac": "P0DTC2-1" }, { "glytoucan_ac": "G57317CE", "type": "N-linked;o-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Identified intact N-glycopeptides with noted commentS-TG-before-R1", "icn3d_view": {}, "start_pos": 343, "start_aa": "Asn", "end_pos": 343, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn343", "evidence": [ { "id": "33077685", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/33077685" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1074/mcp.RA120.002295", "database": "DOI", "url": "https://doi.org/10.1074/mcp.RA120.002295" }, { "id": "10.1101/2020.03.28.013276", "database": "DOI", "url": "https://doi.org/10.1101/2020.03.28.013276" } ], "filter_code": "001000000000000000000.0000000.00000000001000.0100000.1100000000.010111110111111100.00010.01100", "uniprot_canonical_ac": "P0DTC2-1" }, { "glytoucan_ac": "G57776ZU", "type": "N-linked;o-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Elastase digestion of purified S protein, providing glycopeptide identification metrics from Byonic search. Expression construct included residues 1\u22121208 of the SARS-CoV-2 S (GenBank: MN908947) with proline substitutions at residues 986 and 987, a \u201cGSAS\u201d substitution at the furin cleavage site (residues 682\u2013685), a C-terminal T4 fibritin trimerization motif, an HRV3C protease cleavage site, a TwinStrepTag and an 8XHisTag.", "icn3d_view": {}, "start_pos": 343, "start_aa": "Asn", "end_pos": 343, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn343", "evidence": [ { "id": "34004174", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/34004174" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1016/j.celrep.2021.109179", "database": "DOI", "url": "https://doi.org/10.1016/j.celrep.2021.109179" }, { "id": "33077685", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/33077685" }, { "id": "10.1074/mcp.RA120.002295", "database": "DOI", "url": "https://doi.org/10.1074/mcp.RA120.002295" }, { "id": "10.1101/2020.03.28.013276", "database": "DOI", "url": "https://doi.org/10.1101/2020.03.28.013276" } ], "filter_code": "001000000000000000000.xxxxxxx.00000000001000.xxxxxxx.xxxxxxxxxx.xxxxxxxxxxxxxxxxxx.xxxxx.01100", "uniprot_canonical_ac": "P0DTC2-1" }, { "glytoucan_ac": "G62765YT", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Identified intact N-glycopeptides with noted commentS-TG-before-R1", "icn3d_view": {}, "start_pos": 343, "start_aa": "Asn", "end_pos": 343, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn343", "evidence": [ { "id": "33077685", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/33077685" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1074/mcp.RA120.002295", "database": "DOI", "url": "https://doi.org/10.1074/mcp.RA120.002295" }, { "id": "32363391", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/32363391" }, { "id": "10.1101/2020.04.01.020966", "database": "DOI", "url": "https://doi.org/10.1101/2020.04.01.020966" }, { "id": "10.1101/2020.03.28.013276", "database": "DOI", "url": "https://doi.org/10.1101/2020.03.28.013276" } ], "filter_code": "001000000000000000000.xxxxxxx.00010000000000.xxxxxxx.xxxxxxxxxx.xxxxxxxxxxxxxxxxxx.xxxxx.01100", "uniprot_canonical_ac": "P0DTC2-1" }, { "glytoucan_ac": "G80475RE", "type": "N-linked;o-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Elastase digestion of purified S protein, providing glycopeptide identification metrics from Byonic search. Expression construct included residues 1\u22121208 of the SARS-CoV-2 S (GenBank: MN908947) with proline substitutions at residues 986 and 987, a \u201cGSAS\u201d substitution at the furin cleavage site (residues 682\u2013685), a C-terminal T4 fibritin trimerization motif, an HRV3C protease cleavage site, a TwinStrepTag and an 8XHisTag.", "icn3d_view": {}, "start_pos": 343, "start_aa": "Asn", "end_pos": 343, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn343", "evidence": [ { "id": "34004174", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/34004174" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1016/j.celrep.2021.109179", "database": "DOI", "url": "https://doi.org/10.1016/j.celrep.2021.109179" }, { "id": "33077685", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/33077685" }, { "id": "10.1074/mcp.RA120.002295", "database": "DOI", "url": "https://doi.org/10.1074/mcp.RA120.002295" }, { "id": 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Expression construct included residues 1\u22121208 of the SARS-CoV-2 S (GenBank: MN908947) with proline substitutions at residues 986 and 987, a \u201cGSAS\u201d substitution at the furin cleavage site (residues 682\u2013685), a C-terminal T4 fibritin trimerization motif, an HRV3C protease cleavage site, a TwinStrepTag and an 8XHisTag.", "icn3d_view": {}, "start_pos": 709, "start_aa": "Asn", "end_pos": 709, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn709", "evidence": [ { "id": "34004174", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/34004174" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1016/j.celrep.2021.109179", "database": "DOI", "url": "https://doi.org/10.1016/j.celrep.2021.109179" }, { "id": "33077685", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/33077685" }, { "id": "10.1074/mcp.RA120.002295", "database": "DOI", "url": "https://doi.org/10.1074/mcp.RA120.002295" }, { "id": "32366695", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/32366695" }, { "id": "10.1126/science.abb9983", "database": "DOI", "url": "https://doi.org/10.1126/science.abb9983" }, { "id": "32518941", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/32518941" } ], "filter_code": "001000000000000000000.xxxxxxx.00010000000000.xxxxxxx.xxxxxxxxxx.xxxxxxxxxxxxxxxxxx.xxxxx.01000", "uniprot_canonical_ac": "P0DTC2-1" }, { "glytoucan_ac": "G35029YA", "type": "N-linked;o-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Identified intact N-glycopeptides with noted commentS-G-before-R1", "icn3d_view": {}, "start_pos": 709, "start_aa": "Asn", "end_pos": 709, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn709", "evidence": [ { "id": "33077685", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/33077685" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1074/mcp.RA120.002295", "database": "DOI", "url": "https://doi.org/10.1074/mcp.RA120.002295" }, { "id": "32518941", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/32518941" } ], "filter_code": "001000000000000000000.0000000.00000000001000.0100000.1100000000.010111100111111101.00010.01000", "uniprot_canonical_ac": "P0DTC2-1" }, { "glytoucan_ac": "G41247ZX", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Elastase digestion of purified S protein, providing glycopeptide identification metrics from Byonic search. Expression construct included residues 1\u22121208 of the SARS-CoV-2 S (GenBank: MN908947) with proline substitutions at residues 986 and 987, a \u201cGSAS\u201d substitution at the furin cleavage site (residues 682\u2013685), a C-terminal T4 fibritin trimerization motif, an HRV3C protease cleavage site, a TwinStrepTag and an 8XHisTag.", "icn3d_view": {}, "start_pos": 709, "start_aa": "Asn", "end_pos": 709, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn709", "evidence": [ { "id": "34004174", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/34004174" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1016/j.celrep.2021.109179", "database": "DOI", "url": "https://doi.org/10.1016/j.celrep.2021.109179" }, { "id": "33077685", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/33077685" }, { "id": "10.1074/mcp.RA120.002295", "database": "DOI", "url": "https://doi.org/10.1074/mcp.RA120.002295" }, { "id": "32366695", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/32366695" }, { "id": "10.1126/science.abb9983", "database": "DOI", "url": "https://doi.org/10.1126/science.abb9983" }, { "id": "32518941", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/32518941" } ], "filter_code": "001000000000000000000.xxxxxxx.00010000000000.xxxxxxx.xxxxxxxxxx.xxxxxxxxxxxxxxxxxx.xxxxx.01000", "uniprot_canonical_ac": "P0DTC2-1" }, { "glytoucan_ac": "G53434XO", "type": "N-linked;o-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Identified intact N-glycopeptides with noted commentS-G-after-R1", "icn3d_view": {}, "start_pos": 709, "start_aa": "Asn", "end_pos": 709, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn709", "evidence": [ { "id": "33077685", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/33077685" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1074/mcp.RA120.002295", "database": "DOI", "url": "https://doi.org/10.1074/mcp.RA120.002295" }, { "id": "32518941", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/32518941" } ], "filter_code": "001000000000000000000.0000000.00000000001000.1000000.1100000000.110110100111111111.00010.01000", "uniprot_canonical_ac": "P0DTC2-1" }, { "glytoucan_ac": "G57317CE", "type": "N-linked;o-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Identified intact N-glycopeptides with noted commentS-G-after-R2", "icn3d_view": {}, "start_pos": 709, "start_aa": "Asn", "end_pos": 709, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn709", "evidence": [ { "id": "33077685", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/33077685" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1074/mcp.RA120.002295", "database": "DOI", "url": "https://doi.org/10.1074/mcp.RA120.002295" } ], "filter_code": "001000000000000000000.0000000.00000000001000.0100000.1100000000.010111110111111100.00010.01000", "uniprot_canonical_ac": "P0DTC2-1" }, { "glytoucan_ac": "G57776ZU", "type": "N-linked;o-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Identified intact N-glycopeptides with noted commentS-TG-before-R2", "icn3d_view": {}, "start_pos": 709, "start_aa": "Asn", "end_pos": 709, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn709", "evidence": [ { "id": "33077685", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/33077685" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1074/mcp.RA120.002295", "database": "DOI", "url": "https://doi.org/10.1074/mcp.RA120.002295" } ], "filter_code": "001000000000000000000.xxxxxxx.00000000001000.xxxxxxx.xxxxxxxxxx.xxxxxxxxxxxxxxxxxx.xxxxx.01000", "uniprot_canonical_ac": "P0DTC2-1" }, { "glytoucan_ac": "G62765YT", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Elastase digestion of purified S protein, providing glycopeptide identification metrics from Byonic search. Expression construct included residues 1\u22121208 of the SARS-CoV-2 S (GenBank: MN908947) with proline substitutions at residues 986 and 987, a \u201cGSAS\u201d substitution at the furin cleavage site (residues 682\u2013685), a C-terminal T4 fibritin trimerization motif, an HRV3C protease cleavage site, a TwinStrepTag and an 8XHisTag.", "icn3d_view": {}, "start_pos": 709, "start_aa": "Asn", "end_pos": 709, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn709", "evidence": [ { "id": "34004174", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/34004174" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1016/j.celrep.2021.109179", "database": "DOI", "url": "https://doi.org/10.1016/j.celrep.2021.109179" }, { "id": "33077685", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/33077685" }, { "id": "10.1074/mcp.RA120.002295", "database": "DOI", "url": "https://doi.org/10.1074/mcp.RA120.002295" }, { "id": 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Expression construct included residues 1\u22121208 of the SARS-CoV-2 S (GenBank: MN908947) with proline substitutions at residues 986 and 987, a \u201cGSAS\u201d substitution at the furin cleavage site (residues 682\u2013685), a C-terminal T4 fibritin trimerization motif, an HRV3C protease cleavage site, a TwinStrepTag and an 8XHisTag.", "icn3d_view": {}, "start_pos": 709, "start_aa": "Asn", "end_pos": 709, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn709", "evidence": [ { "id": "34004174", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/34004174" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1016/j.celrep.2021.109179", "database": "DOI", "url": "https://doi.org/10.1016/j.celrep.2021.109179" }, { "id": "33077685", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/33077685" }, { "id": "10.1074/mcp.RA120.002295", "database": "DOI", "url": "https://doi.org/10.1074/mcp.RA120.002295" }, { "id": "32366695", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/32366695" }, { "id": "10.1126/science.abb9983", "database": "DOI", "url": "https://doi.org/10.1126/science.abb9983" }, { "id": "32518941", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/32518941" } ], "filter_code": "001000000000000000000.xxxxxxx.00010000000000.xxxxxxx.xxxxxxxxxx.xxxxxxxxxxxxxxxxxx.xxxxx.01000", "uniprot_canonical_ac": "P0DTC2-1" }, { "glytoucan_ac": "G59937CP", "type": "N-linked;o-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "S2P-LC", "icn3d_view": {}, "start_pos": 709, "start_aa": "Asn", "end_pos": 709, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn709", "evidence": [ { "id": "33064451", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/33064451" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1021/acs.analchem.0c03301", "database": "DOI", "url": "https://doi.org/10.1021/acs.analchem.0c03301" }, { "id": "34004174", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/34004174" }, { "id": "10.1016/j.celrep.2021.109179", "database": "DOI", "url": "https://doi.org/10.1016/j.celrep.2021.109179" }, { "id": "32366695", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/32366695" }, { "id": "10.1126/science.abb9983", "database": "DOI", "url": "https://doi.org/10.1126/science.abb9983" } ], "filter_code": "001000000000000000000.0000000.00000000001000.0100000.1110000000.010111100011111101.00010.01000", "uniprot_canonical_ac": "P0DTC2-1" }, { "glytoucan_ac": "G62765YT", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Elastase digestion of purified S protein, providing glycopeptide identification metrics from Byonic search. Expression construct included residues 1\u22121208 of the SARS-CoV-2 S (GenBank: MN908947) with proline substitutions at residues 986 and 987, a \u201cGSAS\u201d substitution at the furin cleavage site (residues 682\u2013685), a C-terminal T4 fibritin trimerization motif, an HRV3C protease cleavage site, a TwinStrepTag and an 8XHisTag.", "icn3d_view": {}, "start_pos": 709, "start_aa": "Asn", "end_pos": 709, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn709", "evidence": [ { "id": "34004174", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/34004174" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1016/j.celrep.2021.109179", "database": "DOI", "url": "https://doi.org/10.1016/j.celrep.2021.109179" }, { "id": "33077685", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/33077685" }, { "id": "10.1074/mcp.RA120.002295", "database": "DOI", "url": "https://doi.org/10.1074/mcp.RA120.002295" }, { "id": "32366695", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/32366695" }, { "id": "10.1126/science.abb9983", "database": "DOI", "url": "https://doi.org/10.1126/science.abb9983" }, { "id": "32518941", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/32518941" } ], "filter_code": "001000000000000000000.xxxxxxx.00010000000000.xxxxxxx.xxxxxxxxxx.xxxxxxxxxxxxxxxxxx.xxxxx.01000", "uniprot_canonical_ac": "P0DTC2-1" }, { "glytoucan_ac": "G88725PI", "type": "N-linked;o-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Elastase digestion of purified S protein, providing glycopeptide identification metrics from Byonic search. Expression construct included residues 1\u22121208 of the SARS-CoV-2 S (GenBank: MN908947) with proline substitutions at residues 986 and 987, a \u201cGSAS\u201d substitution at the furin cleavage site (residues 682\u2013685), a C-terminal T4 fibritin trimerization motif, an HRV3C protease cleavage site, a TwinStrepTag and an 8XHisTag.", "icn3d_view": {}, "start_pos": 709, "start_aa": "Asn", "end_pos": 709, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn709", "evidence": [ { "id": "34004174", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/34004174" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1016/j.celrep.2021.109179", "database": "DOI", "url": "https://doi.org/10.1016/j.celrep.2021.109179" }, { "id": "32366695", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/32366695" }, { "id": "10.1126/science.abb9983", "database": "DOI", "url": "https://doi.org/10.1126/science.abb9983" } ], "filter_code": "001000000000000000000.0000000.00000000001000.0100000.1110000000.010111100011111101.00010.01000", "uniprot_canonical_ac": "P0DTC2-1" }, { "glytoucan_ac": "G92050GC", "type": "N-linked;o-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Identified intact N-glycopeptides with noted commentS-G-after-R1", "icn3d_view": {}, "start_pos": 709, "start_aa": "Asn", "end_pos": 709, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn709", "evidence": [ { "id": "33077685", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/33077685" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1074/mcp.RA120.002295", "database": "DOI", "url": "https://doi.org/10.1074/mcp.RA120.002295" }, { "id": "32366695", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/32366695" }, { "id": "10.1126/science.abb9983", "database": "DOI", "url": "https://doi.org/10.1126/science.abb9983" }, { "id": "32518941", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/32518941" } ], "filter_code": "001000000000000000000.xxxxxxx.00000000001000.xxxxxxx.xxxxxxxxxx.xxxxxxxxxxxxxxxxxx.xxxxx.01000", "uniprot_canonical_ac": "P0DTC2-1" }, { "glytoucan_ac": "G01650EU", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Elastase digestion of purified S protein, providing glycopeptide identification metrics from Byonic search. Expression construct included residues 1\u22121208 of the SARS-CoV-2 S (GenBank: MN908947) with proline substitutions at residues 986 and 987, a \u201cGSAS\u201d substitution at the furin cleavage site (residues 682\u2013685), a C-terminal T4 fibritin trimerization motif, an HRV3C protease cleavage site, a TwinStrepTag and an 8XHisTag.", "icn3d_view": {}, "start_pos": 717, "start_aa": "Asn", "end_pos": 717, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn717", "evidence": [ { "id": "34004174", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/34004174" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1016/j.celrep.2021.109179", "database": "DOI", "url": "https://doi.org/10.1016/j.celrep.2021.109179" }, { "id": "32366695", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/32366695" }, { "id": "10.1126/science.abb9983", "database": "DOI", "url": "https://doi.org/10.1126/science.abb9983" } ], "filter_code": "001000000000000000000.xxxxxxx.00010000000000.xxxxxxx.xxxxxxxxxx.xxxxxxxxxxxxxxxxxx.xxxxx.01000", "uniprot_canonical_ac": "P0DTC2-1" }, { "glytoucan_ac": "G02815KT", "type": "N-linked;o-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "S2P-AC", "icn3d_view": {}, "start_pos": 717, "start_aa": "Asn", "end_pos": 717, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn717", "evidence": [ { "id": "33064451", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/33064451" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1021/acs.analchem.0c03301", "database": "DOI", "url": "https://doi.org/10.1021/acs.analchem.0c03301" }, { "id": "34004174", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/34004174" }, { "id": "10.1016/j.celrep.2021.109179", "database": "DOI", "url": "https://doi.org/10.1016/j.celrep.2021.109179" }, { "id": "32366695", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/32366695" }, { "id": "10.1126/science.abb9983", "database": "DOI", "url": "https://doi.org/10.1126/science.abb9983" }, { "id": "32518941", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/32518941" } ], "filter_code": "001000000000000000000.xxxxxxx.00000000001000.xxxxxxx.xxxxxxxxxx.xxxxxxxxxxxxxxxxxx.xxxxx.01000", "uniprot_canonical_ac": "P0DTC2-1" }, { "glytoucan_ac": "G03574QJ", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Biological Replicate 1", "icn3d_view": {}, "start_pos": 717, "start_aa": "Asn", "end_pos": 717, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn717", "evidence": [ { "id": "32366695", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/32366695" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1126/science.abb9983", "database": "DOI", "url": "https://doi.org/10.1126/science.abb9983" } ], "filter_code": "001000000000000000000.0000000.00010000000000.0100000.1110000000.010111100001101100.00010.01000", "uniprot_canonical_ac": "P0DTC2-1" }, { "glytoucan_ac": "G08293MJ", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Biological Replicate 3", "icn3d_view": {}, "start_pos": 717, "start_aa": "Asn", "end_pos": 717, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn717", "evidence": [ { "id": "32366695", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/32366695" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1126/science.abb9983", "database": "DOI", "url": "https://doi.org/10.1126/science.abb9983" } ], "filter_code": "001000000000000000000.0000000.00010000000000.0010000.1110100000.010111000011111101.00100.01000", "uniprot_canonical_ac": "P0DTC2-1" }, { "glytoucan_ac": "G09528DL", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Biological Replicate 1", "icn3d_view": {}, "start_pos": 717, "start_aa": "Asn", "end_pos": 717, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn717", "evidence": [ { "id": "32366695", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/32366695" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1126/science.abb9983", "database": "DOI", "url": "https://doi.org/10.1126/science.abb9983" } ], "filter_code": "001000000000000000000.0000000.00010000000000.0010000.1110100000.010100000001111101.00100.01000", "uniprot_canonical_ac": "P0DTC2-1" }, { "glytoucan_ac": "G10339FR", "type": "N-linked;o-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Elastase digestion of purified S protein, providing glycopeptide identification metrics from Byonic search. Expression construct included residues 1\u22121208 of the SARS-CoV-2 S (GenBank: MN908947) with proline substitutions at residues 986 and 987, a \u201cGSAS\u201d substitution at the furin cleavage site (residues 682\u2013685), a C-terminal T4 fibritin trimerization motif, an HRV3C protease cleavage site, a TwinStrepTag and an 8XHisTag.", "icn3d_view": {}, "start_pos": 717, "start_aa": "Asn", "end_pos": 717, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn717", "evidence": [ { "id": "34004174", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/34004174" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1016/j.celrep.2021.109179", "database": "DOI", "url": "https://doi.org/10.1016/j.celrep.2021.109179" }, { "id": "32366695", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/32366695" }, { "id": "10.1126/science.abb9983", "database": "DOI", "url": "https://doi.org/10.1126/science.abb9983" }, { "id": "32518941", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/32518941" } ], "filter_code": "001000000000000000000.0000000.00000000001000.0100000.1110000000.010111100111111100.00010.01000", "uniprot_canonical_ac": "P0DTC2-1" }, { "glytoucan_ac": "G10486CT", "type": "N-linked;o-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Elastase digestion of purified S protein, providing glycopeptide identification metrics from Byonic search. Expression construct included residues 1\u22121208 of the SARS-CoV-2 S (GenBank: MN908947) with proline substitutions at residues 986 and 987, a \u201cGSAS\u201d substitution at the furin cleavage site (residues 682\u2013685), a C-terminal T4 fibritin trimerization motif, an HRV3C protease cleavage site, a TwinStrepTag and an 8XHisTag.", "icn3d_view": {}, "start_pos": 717, "start_aa": "Asn", "end_pos": 717, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn717", "evidence": [ { "id": "34004174", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/34004174" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1016/j.celrep.2021.109179", "database": "DOI", "url": "https://doi.org/10.1016/j.celrep.2021.109179" }, { "id": "32366695", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/32366695" }, { "id": "10.1126/science.abb9983", "database": "DOI", "url": "https://doi.org/10.1126/science.abb9983" } ], "filter_code": "001000000000000000000.xxxxxxx.00000000001000.xxxxxxx.xxxxxxxxxx.xxxxxxxxxxxxxxxxxx.xxxxx.01000", "uniprot_canonical_ac": "P0DTC2-1" }, { "glytoucan_ac": "G15486FH", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Elastase digestion of purified S protein, providing glycopeptide identification metrics from Byonic search. Expression construct included residues 1\u22121208 of the SARS-CoV-2 S (GenBank: MN908947) with proline substitutions at residues 986 and 987, a \u201cGSAS\u201d substitution at the furin cleavage site (residues 682\u2013685), a C-terminal T4 fibritin trimerization motif, an HRV3C protease cleavage site, a TwinStrepTag and an 8XHisTag.", "icn3d_view": {}, "start_pos": 717, "start_aa": "Asn", "end_pos": 717, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn717", "evidence": [ { "id": "34004174", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/34004174" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1016/j.celrep.2021.109179", "database": "DOI", "url": "https://doi.org/10.1016/j.celrep.2021.109179" }, { "id": "32366695", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/32366695" }, { "id": "10.1126/science.abb9983", "database": "DOI", "url": "https://doi.org/10.1126/science.abb9983" }, { "id": "32518941", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/32518941" } ], "filter_code": "001000000000000000000.0000000.00010000000000.0100000.1110000000.010111100011111101.00010.01000", "uniprot_canonical_ac": "P0DTC2-1" }, { "glytoucan_ac": "G28541PG", "type": "N-linked;o-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Elastase digestion of purified S protein, providing glycopeptide identification metrics from Byonic search. Expression construct included residues 1\u22121208 of the SARS-CoV-2 S (GenBank: MN908947) with proline substitutions at residues 986 and 987, a \u201cGSAS\u201d substitution at the furin cleavage site (residues 682\u2013685), a C-terminal T4 fibritin trimerization motif, an HRV3C protease cleavage site, a TwinStrepTag and an 8XHisTag.", "icn3d_view": {}, "start_pos": 717, "start_aa": "Asn", "end_pos": 717, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn717", "evidence": [ { "id": "34004174", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/34004174" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1016/j.celrep.2021.109179", "database": "DOI", "url": "https://doi.org/10.1016/j.celrep.2021.109179" }, { "id": "32366695", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/32366695" }, { "id": "10.1126/science.abb9983", "database": "DOI", "url": "https://doi.org/10.1126/science.abb9983" } ], "filter_code": "001000000000000000000.xxxxxxx.00000000001000.xxxxxxx.xxxxxxxxxx.xxxxxxxxxxxxxxxxxx.xxxxx.01000", "uniprot_canonical_ac": "P0DTC2-1" }, { "glytoucan_ac": "G31852PQ", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Elastase digestion of purified S protein, providing glycopeptide identification metrics from Byonic search. Expression construct included residues 1\u22121208 of the SARS-CoV-2 S (GenBank: MN908947) with proline substitutions at residues 986 and 987, a \u201cGSAS\u201d substitution at the furin cleavage site (residues 682\u2013685), a C-terminal T4 fibritin trimerization motif, an HRV3C protease cleavage site, a TwinStrepTag and an 8XHisTag.", "icn3d_view": {}, "start_pos": 717, "start_aa": "Asn", "end_pos": 717, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn717", "evidence": [ { "id": "34004174", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/34004174" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1016/j.celrep.2021.109179", "database": "DOI", "url": "https://doi.org/10.1016/j.celrep.2021.109179" }, { "id": "32366695", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/32366695" }, { "id": "10.1126/science.abb9983", "database": "DOI", "url": "https://doi.org/10.1126/science.abb9983" }, { "id": "32518941", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/32518941" } ], "filter_code": "001000000000000000000.xxxxxxx.00010000000000.xxxxxxx.xxxxxxxxxx.xxxxxxxxxxxxxxxxxx.xxxxx.01000", "uniprot_canonical_ac": "P0DTC2-1" }, { "glytoucan_ac": "G34029GR", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Biological Replicate 3", "icn3d_view": {}, "start_pos": 717, "start_aa": "Asn", "end_pos": 717, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn717", "evidence": [ { "id": "32366695", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/32366695" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1126/science.abb9983", "database": "DOI", "url": "https://doi.org/10.1126/science.abb9983" } ], "filter_code": "001000000000000000000.0000000.00010000000000.0010000.1100000000.010100000001100100.00010.01000", "uniprot_canonical_ac": "P0DTC2-1" }, { "glytoucan_ac": "G35029YA", "type": "N-linked;o-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Biological Replicate 1", "icn3d_view": {}, "start_pos": 717, "start_aa": "Asn", "end_pos": 717, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn717", "evidence": [ { "id": "32366695", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/32366695" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1126/science.abb9983", "database": "DOI", "url": "https://doi.org/10.1126/science.abb9983" }, { "id": "32518941", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/32518941" } ], "filter_code": "001000000000000000000.0000000.00000000001000.0100000.1100000000.010111100111111101.00010.01000", "uniprot_canonical_ac": "P0DTC2-1" }, { "glytoucan_ac": "G37399XV", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Elastase digestion of purified S protein, providing glycopeptide identification metrics from Byonic search. Expression construct included residues 1\u22121208 of the SARS-CoV-2 S (GenBank: MN908947) with proline substitutions at residues 986 and 987, a \u201cGSAS\u201d substitution at the furin cleavage site (residues 682\u2013685), a C-terminal T4 fibritin trimerization motif, an HRV3C protease cleavage site, a TwinStrepTag and an 8XHisTag.", "icn3d_view": {}, "start_pos": 717, "start_aa": "Asn", "end_pos": 717, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn717", "evidence": [ { "id": "34004174", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/34004174" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1016/j.celrep.2021.109179", "database": "DOI", "url": "https://doi.org/10.1016/j.celrep.2021.109179" }, { "id": "32366695", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/32366695" }, { "id": "10.1126/science.abb9983", "database": "DOI", "url": "https://doi.org/10.1126/science.abb9983" } ], "filter_code": "001000000000000000000.xxxxxxx.00010000000000.xxxxxxx.xxxxxxxxxx.xxxxxxxxxxxxxxxxxx.xxxxx.01000", "uniprot_canonical_ac": "P0DTC2-1" }, { "glytoucan_ac": "G39446WN", "type": "N-linked;o-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Elastase digestion of purified S protein, providing glycopeptide identification metrics from Byonic search. Expression construct included residues 1\u22121208 of the SARS-CoV-2 S (GenBank: MN908947) with proline substitutions at residues 986 and 987, a \u201cGSAS\u201d substitution at the furin cleavage site (residues 682\u2013685), a C-terminal T4 fibritin trimerization motif, an HRV3C protease cleavage site, a TwinStrepTag and an 8XHisTag.", "icn3d_view": {}, "start_pos": 717, "start_aa": "Asn", "end_pos": 717, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn717", "evidence": [ { "id": "34004174", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/34004174" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1016/j.celrep.2021.109179", "database": "DOI", "url": "https://doi.org/10.1016/j.celrep.2021.109179" }, { "id": "32366695", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/32366695" }, { "id": "10.1126/science.abb9983", "database": "DOI", "url": "https://doi.org/10.1126/science.abb9983" }, { "id": "32518941", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/32518941" } ], "filter_code": "001000000000000000000.0000000.00000000001000.0100000.1100000000.010111100011111101.00010.01000", "uniprot_canonical_ac": "P0DTC2-1" }, { "glytoucan_ac": "G41247ZX", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Elastase digestion of purified S protein, providing glycopeptide identification metrics from Byonic search. Expression construct included residues 1\u22121208 of the SARS-CoV-2 S (GenBank: MN908947) with proline substitutions at residues 986 and 987, a \u201cGSAS\u201d substitution at the furin cleavage site (residues 682\u2013685), a C-terminal T4 fibritin trimerization motif, an HRV3C protease cleavage site, a TwinStrepTag and an 8XHisTag.", "icn3d_view": {}, "start_pos": 717, "start_aa": "Asn", "end_pos": 717, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn717", "evidence": [ { "id": "34004174", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/34004174" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1016/j.celrep.2021.109179", "database": "DOI", "url": "https://doi.org/10.1016/j.celrep.2021.109179" }, { "id": "32366695", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/32366695" }, { "id": "10.1126/science.abb9983", "database": "DOI", "url": "https://doi.org/10.1126/science.abb9983" }, { "id": "32518941", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/32518941" } ], "filter_code": "001000000000000000000.xxxxxxx.00010000000000.xxxxxxx.xxxxxxxxxx.xxxxxxxxxxxxxxxxxx.xxxxx.01000", "uniprot_canonical_ac": "P0DTC2-1" }, { "glytoucan_ac": "G50073PQ", "type": "N-linked;o-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Biological Replicate 3", "icn3d_view": {}, "start_pos": 717, "start_aa": "Asn", "end_pos": 717, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn717", "evidence": [ { "id": "32366695", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/32366695" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1126/science.abb9983", "database": "DOI", "url": "https://doi.org/10.1126/science.abb9983" } ], "filter_code": "001000000000000000000.0000000.00000000001000.0100000.1110000000.000000000001101101.00010.01000", "uniprot_canonical_ac": "P0DTC2-1" }, { "glytoucan_ac": "G54600FO", "type": "N-linked;o-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Biological Replicate 1", "icn3d_view": {}, "start_pos": 717, "start_aa": "Asn", "end_pos": 717, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn717", "evidence": [ { "id": "32366695", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/32366695" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1126/science.abb9983", "database": "DOI", "url": "https://doi.org/10.1126/science.abb9983" } ], "filter_code": "001000000000000000000.0000000.00000000001000.0100000.1110100000.010111000001111100.00100.01000", "uniprot_canonical_ac": "P0DTC2-1" }, { "glytoucan_ac": "G58802FE", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Biological Replicate 3", "icn3d_view": {}, "start_pos": 717, "start_aa": "Asn", "end_pos": 717, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn717", "evidence": [ { "id": "32366695", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/32366695" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1126/science.abb9983", "database": "DOI", "url": "https://doi.org/10.1126/science.abb9983" } ], "filter_code": "001000000000000000000.0000000.00010000000000.0010000.1110000000.000000000001100100.00010.01000", "uniprot_canonical_ac": "P0DTC2-1" }, { "glytoucan_ac": "G59937CP", "type": "N-linked;o-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Elastase digestion of purified S protein, providing glycopeptide identification metrics from Byonic search. Expression construct included residues 1\u22121208 of the SARS-CoV-2 S (GenBank: MN908947) with proline substitutions at residues 986 and 987, a \u201cGSAS\u201d substitution at the furin cleavage site (residues 682\u2013685), a C-terminal T4 fibritin trimerization motif, an HRV3C protease cleavage site, a TwinStrepTag and an 8XHisTag.", "icn3d_view": {}, "start_pos": 717, "start_aa": "Asn", "end_pos": 717, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn717", "evidence": [ { "id": "34004174", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/34004174" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1016/j.celrep.2021.109179", "database": "DOI", "url": "https://doi.org/10.1016/j.celrep.2021.109179" }, { "id": "32366695", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/32366695" }, { "id": "10.1126/science.abb9983", "database": "DOI", "url": "https://doi.org/10.1126/science.abb9983" } ], "filter_code": "001000000000000000000.0000000.00000000001000.0100000.1110000000.010111100011111101.00010.01000", "uniprot_canonical_ac": "P0DTC2-1" }, { "glytoucan_ac": "G80475RE", "type": "N-linked;o-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Biological Replicate 1", "icn3d_view": {}, "start_pos": 717, "start_aa": "Asn", "end_pos": 717, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn717", "evidence": [ { "id": "32366695", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/32366695" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1126/science.abb9983", "database": "DOI", "url": "https://doi.org/10.1126/science.abb9983" }, { "id": "32518941", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/32518941" } ], "filter_code": "001000000000000000000.0000000.00000000001000.0100000.1110000000.010011110111111101.00010.01000", "uniprot_canonical_ac": "P0DTC2-1" }, { "glytoucan_ac": "G80920RR", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Biological Replicate 1", "icn3d_view": {}, "start_pos": 717, "start_aa": "Asn", "end_pos": 717, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn717", "evidence": [ { "id": "32366695", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/32366695" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1126/science.abb9983", "database": "DOI", "url": "https://doi.org/10.1126/science.abb9983" }, { "id": "32518941", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/32518941" } ], "filter_code": "001000000000000000000.xxxxxxx.00010000000000.xxxxxxx.xxxxxxxxxx.xxxxxxxxxxxxxxxxxx.xxxxx.01000", "uniprot_canonical_ac": "P0DTC2-1" }, { "glytoucan_ac": "G83555HU", "type": "N-linked;o-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Elastase digestion of purified S protein, providing glycopeptide identification metrics from Byonic search. Expression construct included residues 1\u22121208 of the SARS-CoV-2 S (GenBank: MN908947) with proline substitutions at residues 986 and 987, a \u201cGSAS\u201d substitution at the furin cleavage site (residues 682\u2013685), a C-terminal T4 fibritin trimerization motif, an HRV3C protease cleavage site, a TwinStrepTag and an 8XHisTag.", "icn3d_view": {}, "start_pos": 717, "start_aa": "Asn", "end_pos": 717, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn717", "evidence": [ { "id": "34004174", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/34004174" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1016/j.celrep.2021.109179", "database": "DOI", "url": "https://doi.org/10.1016/j.celrep.2021.109179" }, { "id": "32366695", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/32366695" }, { "id": "10.1126/science.abb9983", "database": "DOI", "url": "https://doi.org/10.1126/science.abb9983" } ], "filter_code": "001000000000000000000.0000000.00000000001000.0100000.1110000000.010111100011111101.00010.01000", "uniprot_canonical_ac": "P0DTC2-1" }, { "glytoucan_ac": "G92050GC", "type": "N-linked;o-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "Elastase digestion of purified S protein, providing glycopeptide identification metrics from Byonic search. Expression construct included residues 1\u22121208 of the SARS-CoV-2 S (GenBank: MN908947) with proline substitutions at residues 986 and 987, a \u201cGSAS\u201d substitution at the furin cleavage site (residues 682\u2013685), a C-terminal T4 fibritin trimerization motif, an HRV3C protease cleavage site, a TwinStrepTag and an 8XHisTag.", "icn3d_view": {}, "start_pos": 717, "start_aa": "Asn", "end_pos": 717, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn717", "evidence": [ { "id": "34004174", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/34004174" }, { "id": "GLY_000479", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000479" }, { "id": "10.1016/j.celrep.2021.109179", "database": "DOI", "url": "https://doi.org/10.1016/j.celrep.2021.109179" }, { "id": "32366695", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/32366695" }, { "id": "10.1126/science.abb9983", "database": "DOI", "url": "https://doi.org/10.1126/science.abb9983" }, { "id": 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