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J. Hum. Genet.", "date": "2015", "authors": "Zech M, Lam DD, Francescatto L, Schormair B, Salminen AV, Jochim A, Wieland T, Lichtner P, Peters A, Gieger C, Lochmuller H, Strom TM, Haslinger B, Katsanis N, Winkelmann J", "reference": { "type": "PubMed", "id": "26004199", "url": "https://pubmed.ncbi.nlm.nih.gov/26004199" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q1JPT7-1", "protein_name": "THAP domain-containing protein 1", "gene_name": "thap1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "P12111-1", "protein_name": "Collagen alpha-3(VI) chain", "gene_name": "COL6A3", "tax_name": "Human" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q1JPT7", "url": "https://www.uniprot.org/uniprotkb/Q1JPT7" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.26004199", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": 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AMP-dependent transcription factor ATF-6 alpha", "gene_name": "atf6", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q1L864", "url": "https://www.uniprot.org/uniprotkb/Q1L864" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.38739706", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": 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"count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": 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J. Hum. Genet.", "date": "2025", "authors": "Buchert Rebecca, Burkhalter Martin D, Huridou Chrisovalantou, Sofan Linda, Roser Timo, Cremer Kirsten, Alvi Javeria Raza, Efthymiou Stephanie, Froukh Tawfiq, Gulieva Sughra, Guliyeva Ulviyya, Hamdallah Moath, Holder-Espinasse Muriel, Kaiyrzhanov Rauan, Klingler Doreen, Koko Mahmoud, Matthies Lars, Park Joohyun, Sturm Marc, Velic Ana, Spranger Stephanie, Sultan Tipu, Engels Hartmut, Lerche Holger, Houlden Henry, Pagnamenta Alistair T, Borggraefe Ingo, Weber Yvonne, Bonnen Penelope E, Maroofian Reza, Riess Olaf, Weber Jonasz J, Philipp Melanie, Haack Tobias B", "reference": { "type": "PubMed", "id": "39824192", "url": "https://pubmed.ncbi.nlm.nih.gov/39824192" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q1L8F9-1", "protein_name": "KICSTOR subunit 2", "gene_name": "kics2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q96MD2-1", "protein_name": "KICSTOR subunit 2", "gene_name": "KICS2", "tax_name": "Human" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q1L8F9", "url": "https://www.uniprot.org/uniprotkb/Q1L8F9" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.39824192", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Insights Into the Peroxisomal Protein Inventory of Zebrafish.", "journal": "Front. Physiol.", "date": "2022", "authors": "Kamoshita Maki, Kumar Rechal, Anteghini Marco, Kunze Markus, Islinger Markus, Martins Dos Santos V\u00edtor, Schrader Michael", "reference": { "type": "PubMed", "id": "35295584", "url": "https://pubmed.ncbi.nlm.nih.gov/35295584" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q1L8Q4-1", "protein_name": "Fatty acyl-CoA reductase", "gene_name": "si:dkey-97m3.1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q58EJ9-1", "protein_name": "Mitochondrial amidoxime-reducing component 1", "gene_name": "marc1; mtarc1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7F4V8-1", "protein_name": "Peroxisome biogenesis factor 2", "gene_name": "pex2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E9QH31-1", "protein_name": "Aldehyde dehydrogenase", "gene_name": "aldh3a2b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1RAK0-1", "protein_name": "Long-chain-fatty-acid--CoA ligase", "gene_name": "acsl5", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A2R8QFW3-1", "protein_name": "Peroxisomal membrane protein 4", "gene_name": "pxmp4", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M9P5U3-1", "protein_name": "Enoyl-CoA delta isomerase 2 isoform X1", "gene_name": "eci2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1Q8N0-1", "protein_name": "1.1.1.184; 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urah", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1P861-1", "protein_name": "Malate dehydrogenase", "gene_name": "mdh1aa", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NDU0-1", "protein_name": "Peroxisomal membrane protein PMP34", "gene_name": "slc25a17", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1N2N9-1", "protein_name": "Uncharacterized protein LOC449822 isoform 1", "gene_name": "zgc:101569", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1P8J4-1", "protein_name": "Peroxisomal sarcosine oxidase", "gene_name": "pipox", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58GDQ2-1", "protein_name": "(S)-2-hydroxy-acid oxidase", "gene_name": "hao2", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q1L8Q4", "url": "https://www.uniprot.org/uniprotkb/Q1L8Q4" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.35295584", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 20 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Bi-allelic deleterious variants in SNAPIN, which encodes a retrograde dynein adaptor, cause a prenatal-onset neurodevelopmental disorder.", "journal": "Am. J. Hum. Genet.", "date": "2025", "authors": "Yousaf Hammad, de Koning Maayke A, Khan Kamal, Gilmore Kelly L, Hoffer Mari\u00ebtte J V, Kellaris Georgios, Lanone Sophie, Dagouassat Maylis, Ullah Farid, Adama van Scheltema Phebe N, Heron Delphine, Capri Yline, Kuechler Alma, Schweiger Bernd, Haak Monique C, Keren Boris, Tran Mau Them Frederic, Peeters-Scholte Cacha M P C D, Kaiser Frank J, Koopmann Tamara T, Mei Hailiang, Yalcin Binnaz, Depienne Christel, Vora Neeta L, Santen Gijs W E, Davis Erica E", "reference": { "type": "PubMed", "id": "40930097", "url": "https://pubmed.ncbi.nlm.nih.gov/40930097" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q1L8R9-1", "protein_name": "SNARE-associated protein Snapin", "gene_name": "snapin", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "O95295-1", "protein_name": "SNARE-associated protein Snapin", "gene_name": "SNAPIN", "tax_name": "Human" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q1L8R9", "url": "https://www.uniprot.org/uniprotkb/Q1L8R9" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.40930097", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": 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"Mutations in Bcl9 and Pygo genes cause congenital heart defects by tissue-specific perturbation of Wnt/beta-catenin signaling.", "journal": "Genes Dev.", "date": "2018", "authors": "Cantu C, Felker A, Zimmerli D, Prummel KD, Cabello EM, Chiavacci E, Mendez-Acevedo KM, Kirchgeorg L, Burger S, Ripoll J, Valenta T, Hausmann G, Vilain N, Aguet M, Burger A, Panakova D, Basler K, Mosimann C", "reference": { "type": "PubMed", "id": "30366904", "url": "https://pubmed.ncbi.nlm.nih.gov/30366904" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q1L8T6-1", "protein_name": "Pygopus homolog 2 isoform 1", "gene_name": "pygo2", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q1L8T6", "url": "https://www.uniprot.org/uniprotkb/Q1L8T6" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.30366904", "abstract": "", 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Patterns", "date": "2015", "authors": "Diotel Nicolas, Beil Tanja, Str\u00e4hle Uwe, Rastegar Sepand", "reference": { "type": "PubMed", "id": "26107416", "url": "https://pubmed.ncbi.nlm.nih.gov/26107416" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q1L8W0-1", "protein_name": "Zinc finger and BTB domain-containing protein 18", "gene_name": "zbtb18", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q1L8W0", "url": "https://www.uniprot.org/uniprotkb/Q1L8W0" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.26107416", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", 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Med. Genet.", "date": "2014", "authors": "Scheidecker S, Etard C, Pierce NW, Geoffroy V, Schaefer E, Muller J, Chennen K, Flori E, Pelletier V, Poch O, Marion V, Stoetzel C, Strahle U, Nachury MV, Dollfus H", "reference": { "type": "PubMed", "id": "24026985", "url": "https://pubmed.ncbi.nlm.nih.gov/24026985" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q1L8Y6-1", "protein_name": "BBSome-interacting protein 1", "gene_name": "bbip1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A8MTZ0-1", "protein_name": "BBSome-interacting protein 1", "gene_name": "BBIP1", "tax_name": "Human" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q1L8Y6", "url": "https://www.uniprot.org/uniprotkb/Q1L8Y6" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.24026985", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A model of Costeff Syndrome reveals metabolic and protective functions of mitochondrial OPA3.", "journal": "Development (Cambridge, England)", "date": "2010-08-01", "authors": "Pei Wuhong, Kratz Lisa E, Bernardini Isa, Sood Raman, Yokogawa Tohei, Dorward Heidi, Ciccone Carla, Kelley Richard I, Anikster Yair, Burgess Harold A, Huizing Marjan, Feldman Benjamin", "reference": { "type": "PubMed", "id": "20627962", "url": "https://pubmed.ncbi.nlm.nih.gov/20627962" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q1L9A2-1", "protein_name": "Optic atrophy 3 protein homolog", "gene_name": "opa3", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1RDX1-1", "protein_name": "4.2.1.18; 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Commun.", "date": "2018", "authors": "Zhao Shaoyang, Xia Jianhong, Wu Xiuhua, Zhang Leilei, Wang Pengtao, Wang Haiyun, Li Heying, Wang Xiaoshan, Chen Yan, Agnetti Jean, Li Yinxiong, Pei Duanqing, Shu Xiaodong", "reference": { "type": "PubMed", "id": "29980668", "url": "https://pubmed.ncbi.nlm.nih.gov/29980668" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1Q9F3-1", "protein_name": "Phosphatidylinositol 3-kinase catalytic subunit type 3", "gene_name": "pik3c3", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58G007-1", "protein_name": "Haptoglobin isoform X1", "gene_name": "hp", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q90Z37-1", "protein_name": "Cadherin-1", "gene_name": "cdh1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "O42363-1", "protein_name": "Apolipoprotein A-Ia", "gene_name": "apoa1a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1N5D3-1", "protein_name": "APG16-like 1", "gene_name": "atg16l1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q9I8L5-1", "protein_name": "Fatty acid-binding protein 10-A, liver basic", "gene_name": "fabp10a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M3ASN6-1", "protein_name": "Caspase recruitment domain-containing protein 9 isoform X1", "gene_name": "card9", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1Q9F3", "url": "https://www.uniprot.org/uniprotkb/F1Q9F3" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.29980668", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", 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"count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Identification of Potentially Relevant Genes for Excessive Exercise-Induced Pathological Cardiac Hypertrophy in Zebrafish.", "journal": "Front. Physiol.", "date": "2020", "authors": "Zhou Zuoqiong, Zheng Lan, Tang Changfa, Chen Zhanglin, Zhu Runkang, Peng Xiyang, Wu Xiushan, Zhu Ping", "reference": { "type": "PubMed", "id": "33329019", "url": "https://pubmed.ncbi.nlm.nih.gov/33329019" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1Q9F3-1", "protein_name": "Phosphatidylinositol 3-kinase catalytic subunit type 3", "gene_name": "pik3c3", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q567V5-1", "protein_name": "Small nuclear ribonucleoprotein Sm D2", "gene_name": "snrpd2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7F3I8-1", "protein_name": "ATP-dependent RNA helicase DHX15", "gene_name": "dhx15", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1N836-1", "protein_name": "6-phosphofructo-2-kinase/fructose-2, 6-bisphosphatase 4a isoform 1", "gene_name": "pfkfb4a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q3B736-1", "protein_name": "Autophagy-related protein 101", "gene_name": "atg101", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1P9U9-1", "protein_name": "2.3.2.27; 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Cell Dev. Biol.", "date": "2021", "authors": "Qiang Weidong, Shen Tianzhu, Noman Muhammad, Guo Jinnan, Jin Zhongqian, Lin Danfeng, Pan Jiaxuan, Lu Huiqiang, Li Xiaokun, Gong Fanghua", "reference": { "type": "PubMed", "id": "34746149", "url": "https://pubmed.ncbi.nlm.nih.gov/34746149" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1Q9F3-1", "protein_name": "Phosphatidylinositol 3-kinase catalytic subunit type 3", "gene_name": "pik3c3", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1Q9F3", "url": "https://www.uniprot.org/uniprotkb/F1Q9F3" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.34746149", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Spatacsin and spastizin act in the same pathway required for proper spinal motor neuron axon outgrowth in zebrafish.", "journal": "Neurobiol. Dis.", "date": "2012", "authors": "Martin Elodie, Yanicostas Constantin, Rastetter Agn\u00e8s, Alavi Naini Seyedeh Maryam, Maouedj Alissia, Kabashi Edor, Rivaud-P\u00e9choux Sophie, Brice Alexis, Stevanin Giovanni, Soussi-Yanicostas Nadia", "reference": { "type": "PubMed", "id": "22801083", "url": "https://pubmed.ncbi.nlm.nih.gov/22801083" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F6NK88-1", "protein_name": "Zinc finger FYVE domain-containing protein 26", "gene_name": "zfyve26", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F6NK88", "url": "https://www.uniprot.org/uniprotkb/F6NK88" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.22801083", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": 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Sci. 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Biol.", "date": "2008", "authors": "Postel Ruben, Vakeel Padmanabhan, Topczewski Jacek, Kn\u00f6ll Ralph, Bakkers Jeroen", "reference": { "type": "PubMed", "id": "18436206", "url": "https://pubmed.ncbi.nlm.nih.gov/18436206" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QJC0-1", "protein_name": "Cysteine and glycine-rich protein 1", "gene_name": "csrp3", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QJC0", "url": "https://www.uniprot.org/uniprotkb/F1QJC0" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.18436206", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", 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Biophys. Res. Commun.", "date": "2009", "authors": "Vogel Britta, Meder Benjamin, Just Steffen, Laufer Christina, Berger Ina, Weber Sabrina, Katus Hugo A, Rottbauer Wolfgang", "reference": { "type": "PubMed", "id": "19800866", "url": "https://pubmed.ncbi.nlm.nih.gov/19800866" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QJC0-1", "protein_name": "Cysteine and glycine-rich protein 1", "gene_name": "csrp3", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E9QCX4-1", "protein_name": "Telethonin", "gene_name": "tcap", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QJC0", "url": "https://www.uniprot.org/uniprotkb/F1QJC0" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.19800866", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Nexilin mutations destabilize cardiac Z-disks and lead to dilated cardiomyopathy.", "journal": "Nat. Med.", "date": "2009", "authors": "Hassel D, Dahme T, Erdmann J, Meder B, Huge A, Stoll M, Just S, Hess A, Ehlermann P, Weichenhan D, Grimmler M, Liptau H, Hetzer R, Regitz-Zagrosek V, Fischer C, Nurnberg P, Schunkert H, Katus HA, Rottbauer W", "reference": { "type": "PubMed", "id": "19881492", "url": "https://pubmed.ncbi.nlm.nih.gov/19881492" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QJC0-1", "protein_name": "Cysteine and glycine-rich protein 1", "gene_name": "csrp3", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q9Z2J4-1", "protein_name": "Nexilin", "gene_name": "Nexn", "tax_name": "Rat" }, { "uniprot_canonical_ac": "A0AC58G812-1", "protein_name": "Nexilin isoform X1", "gene_name": "nexn", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q0ZGT2-1", "protein_name": "Nexilin", "gene_name": "NEXN", "tax_name": "Human" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QJC0", "url": "https://www.uniprot.org/uniprotkb/F1QJC0" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.19881492", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Evolution of the vertebrate Pax4/6 class of genes with focus on its novel member, the Pax10 gene.", "journal": "Genome Biol. 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gpr56 knockout in zebrafish.", "journal": "Int. J. Mol. Sci.", "date": "2023", "authors": "Sun Luning, Yang Boyu, Peng Zheng, Yang Tianle, Qin Bin, Ao Jieyu, Yang Yanqun, Wang Jingling, Zheng Lan, Xie Huaping", "reference": { "type": "PubMed", "id": "37175447", "url": "https://pubmed.ncbi.nlm.nih.gov/37175447" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q59I63-1", "protein_name": "Adhesion G protein-coupled receptor G1", "gene_name": "adgrg1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58JR39-1", "protein_name": "Cystathionine gamma-lyase", "gene_name": "cthl", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "P61516-1", "protein_name": "Hepcidin-1", "gene_name": "hamp1; hamp2; hamp", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB13A3N4-1", "protein_name": "Basal cell adhesion molecule isoform 1 precursor", "gene_name": "bcam", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A2R8Q1D2-1", "protein_name": "Phosphatidylinositol N-acetylglucosaminyltransferase subunit 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Molecular targets of TBBPA in zebrafish analysed through integration of genomic and proteomic approaches.", "journal": "Chemosphere", "date": "2008", "authors": "De Wit Marijke, Keil Dorien, Remmerie Noor, van der Ven Karlijn, van den Brandhof Evert-Jan, Knapen Dries, Witters Erwin, De Coen Wim", "reference": { "type": "PubMed", "id": "18976794", "url": "https://pubmed.ncbi.nlm.nih.gov/18976794" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q4QRK0-1", "protein_name": "Methionine aminopeptidase 1", "gene_name": "metap1", "tax_name": "Zebrafish" }, { 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"glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Methionine aminopeptidase 2 is required for HSC initiation and proliferation.", "journal": "Blood", "date": "2011", "authors": "Ma Alvin C H, Fung Tsz K, Lin Rachel H C, Chung Martin I S, Yang Dan, Ekker Stephen C, Leung Anskar Y H", "reference": { "type": "PubMed", "id": "21937698", "url": "https://pubmed.ncbi.nlm.nih.gov/21937698" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q4QRK0-1", "protein_name": "Methionine aminopeptidase 1", "gene_name": "metap1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": 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required for neural progenitor survival and proliferation.", "journal": "Dis. 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Mech.", "date": "2018", "authors": "Schultz Laura E, Haltom Jeffrey A, Almeida Maira P, Wierson Wesley A, Solin Staci L, Weiss Trevor J, Helmer Jordan A, Sandquist Elizabeth J, Shive Heather R, McGrail Maura", "reference": { "type": "PubMed", "id": "29914980", "url": "https://pubmed.ncbi.nlm.nih.gov/29914980" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q4QRK0-1", "protein_name": "Methionine aminopeptidase 1", "gene_name": "metap1", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q4QRK0", "url": "https://www.uniprot.org/uniprotkb/Q4QRK0" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.29914980", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": 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Biophys. Res. Commun.", "date": "2019", "authors": "He Zhili, Crenshaw Ezekiel, Raper Jonathan A", "reference": { "type": "PubMed", "id": "31349972", "url": "https://pubmed.ncbi.nlm.nih.gov/31349972" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q1LYS1-1", "protein_name": "Semaphorin-3E precursor", "gene_name": "sema3e", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1Q897-1", "protein_name": "Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1", "gene_name": "magi2a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5RHD1-1", "protein_name": "Lysine-specific demethylase 7A", "gene_name": "kdm7aa; kdm7a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q1LX89-1", "protein_name": "Ankyrin repeat domain-containing protein 16", "gene_name": "ankrd16", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5RGQ1-1", "protein_name": "Tetraspanin", "gene_name": "tspan11", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QDK1-1", "protein_name": "Vacuolar fusion protein MON1 homolog", "gene_name": "mon1a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB40E5W8-1", "protein_name": "Transmembrane protein 51a", "gene_name": "tmem51a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5RGI2-1", "protein_name": "Nuclear pore complex protein", "gene_name": "nup107", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NJX9-1", "protein_name": "Semaphorin-3B", "gene_name": "sema3b", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q1LYS1", "url": "https://www.uniprot.org/uniprotkb/Q1LYS1" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.31349972", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 9 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Sema3E is required for migration of cranial neural crest cells in zebrafish: Implications for the pathogenesis of CHARGE syndrome.", "journal": "Int. J. Exp. Pathol.", "date": "2019", "authors": "Liu Zhi-Zhi, Guo Jingjing, Lu Yanli, Liu Wenfeng, Fu Xiaofeng, Yao Tianbing, Zhou Yanjun, Xu Hong A", "reference": { "type": "PubMed", "id": "31464029", "url": "https://pubmed.ncbi.nlm.nih.gov/31464029" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q1LYS1-1", "protein_name": "Semaphorin-3E precursor", "gene_name": "sema3e", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q1LYS1", "url": "https://www.uniprot.org/uniprotkb/Q1LYS1" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.31464029", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Nexmifa Regulates Axon Morphogenesis in Motor Neurons in Zebrafish.", "journal": "Front. Mol. Neurosci.", "date": "2022", "authors": "Zheng Yu-Qin, Suo Gui-Hai, Liu Dong, Li Hai-Ying, Wu You-Jia, Ni Hong", "reference": { "type": "PubMed", "id": "35431796", "url": "https://pubmed.ncbi.nlm.nih.gov/35431796" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q1LYS1-1", "protein_name": "Semaphorin-3E precursor", "gene_name": "sema3e", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "O13147-1", "protein_name": "Ephrin type-B receptor 3", "gene_name": "ephb3a; ephb3", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB40ECX9-1", "protein_name": "Netrin-1", "gene_name": "ntn2", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q1LYS1", "url": "https://www.uniprot.org/uniprotkb/Q1LYS1" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.35431796", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Plexin B3 guides axons to cross the midline in vivo.", "journal": "Front. Cell. 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zebrafish visual system.", "journal": "Neuron", "date": "2021", "authors": "Fernandes Ant\u00f3nio M, Mearns Duncan S, Donovan Joseph C, Larsch Johannes, Helmbrecht Thomas O, K\u00f6lsch Yvonne, Laurell Eva, Kawakami Koichi, Dal Maschio Marco, Baier Herwig", "reference": { "type": "PubMed", "id": "33357384", "url": "https://pubmed.ncbi.nlm.nih.gov/33357384" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q1LWV4-1", "protein_name": "LIM/homeobox protein Lhx9", "gene_name": "lhx9", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q9DE29-1", "protein_name": "Adenylate cyclase activating polypeptide 1a isoform 1 precursor", "gene_name": "adcyap1a", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q1LWV4", "url": "https://www.uniprot.org/uniprotkb/Q1LWV4" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": 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Open", "date": "2021", "authors": "Guo Rui, Li Fei, Lu Minxia, Ge Kangkang, Gan Lin, Sheng Donglai", "reference": { "type": "PubMed", "id": "33579692", "url": "https://pubmed.ncbi.nlm.nih.gov/33579692" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q1LWV4-1", "protein_name": "LIM/homeobox protein Lhx9", "gene_name": "lhx9", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q1LWV4", "url": "https://www.uniprot.org/uniprotkb/Q1LWV4" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.33579692", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Genoarchitecture of the Early Postmitotic Pretectum and the Role of Wnt Signaling in Shaping Pretectal Neurochemical Anatomy in Zebrafish.", "journal": "Front. 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Single-cell transcriptome reveals insights into the development and function of the zebrafish ovary.", "journal": "Elife", "date": "2022", "authors": "Liu Yulong, Kossack Michelle E, McFaul Matthew E, Christensen Lana N, Siebert Stefan, Wyatt Sydney R, Kamei Caramai N, Horst Samuel, Arroyo Nayeli, Drummond Iain A, Juliano Celina E, Draper Bruce W", "reference": { "type": "PubMed", "id": "35588359", "url": "https://pubmed.ncbi.nlm.nih.gov/35588359" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q1LWV4-1", "protein_name": "LIM/homeobox protein Lhx9", "gene_name": "lhx9", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B0S525-1", "protein_name": "Insulin-like growth factor-binding protein 5", "gene_name": "igfbp5b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q7SYN5-1", "protein_name": "Retinoic acid receptor RXR-beta-A", "gene_name": "rxrba", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M9PQ80-1", "protein_name": "Protein sprouty homolog 4", "gene_name": "spry4", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M3B506-1", "protein_name": "Pre-B-cell 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Neurosci.", "date": "2024", "authors": "Sagi D., Appelbaum L., Lerer-Goldshtein T., Admati I., Hochgerner H., Tibi M., Zeisel A.", "reference": { "type": "PubMed", "id": "39122556", "url": "https://pubmed.ncbi.nlm.nih.gov/39122556" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q1LWV4-1", "protein_name": "LIM/homeobox protein Lhx9", "gene_name": "lhx9", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q504H8-1", "protein_name": "Homeobox protein HMX3", "gene_name": "hmx3a; hmx3", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q1LWV4", "url": "https://www.uniprot.org/uniprotkb/Q1LWV4" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.39122556", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": 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"protein_name": "Zinc finger protein 143B", "gene_name": "znf143b", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q1LYE3", "url": "https://www.uniprot.org/uniprotkb/Q1LYE3" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.15087134", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": 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"count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The transcriptional activator ZNF143 is essential for normal development in zebrafish.", "journal": "BMC Mol. Biol.", "date": "2012", "authors": "Halbig Kari M, Lekven Arne C, Kunkel Gary R", "reference": { "type": "PubMed", "id": "22268977", "url": "https://pubmed.ncbi.nlm.nih.gov/22268977" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q1LYE3-1", "protein_name": "Zinc finger protein 143B", "gene_name": "znf143b", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q1LYE3", "url": "https://www.uniprot.org/uniprotkb/Q1LYE3" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.22268977", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Two paralogous znf143 genes in zebrafish encode transcriptional activator proteins with similar functions but expressed at different levels during early development.", "journal": "BMC Mol. Cell Biol.", "date": "2020", "authors": "Huning Laura, Kunkel Gary R", "reference": { "type": "PubMed", "id": "31969120", "url": "https://pubmed.ncbi.nlm.nih.gov/31969120" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q1LYE3-1", "protein_name": "Zinc finger protein 143B", "gene_name": "znf143b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5U3T5-1", "protein_name": "Zinc finger protein 143A", "gene_name": "znf143a", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q1LYE3", "url": "https://www.uniprot.org/uniprotkb/Q1LYE3" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.31969120", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { 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"glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.38456494", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Coherent but overlapping expression of microRNAs and their targets during vertebrate development.", "journal": "Genes Dev.", "date": "2009", "authors": "Shkumatava Alena, Stark Alexander, Sive Hazel, Bartel David P", "reference": { "type": "PubMed", "id": "19240133", "url": "https://pubmed.ncbi.nlm.nih.gov/19240133" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q502M5-1", "protein_name": "Enhancer of mRNA-decapping protein 3", "gene_name": "edc3", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5U3E1-1", "protein_name": "small monomeric GTPase", "gene_name": "rab11a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B8A4V2-1", "protein_name": "Annexin", "gene_name": "anxa11a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E9QJF1-1", "protein_name": "alpha-1,2-Mannosidase", "gene_name": "edem1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M6Z2K0-1", "protein_name": "ETS-related transcription factor Elf-1", "gene_name": "elf1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QLR3-1", "protein_name": "RNA-binding protein FXR1", "gene_name": "fxr1", 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Dyn.", "date": "2010", "authors": "Choy Siu Wah, Cheng Chi Wa, Lee Sin Ting, Li Vincent Wai Tsun, Hui Michelle Nga Yu, Hui Chi-Chung, Liu Dong, Cheng Shuk Han", "reference": { "type": "PubMed", "id": "21046643", "url": "https://pubmed.ncbi.nlm.nih.gov/21046643" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q503Z8-1", "protein_name": "Iroquois homeobox protein 6a", "gene_name": "irx6a", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q503Z8", "url": "https://www.uniprot.org/uniprotkb/Q503Z8" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.21046643", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ 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Biol.", "date": "2007", "authors": "Kawahara Tsukasa, Lambeth J David", "reference": { "type": "PubMed", "id": "17900370", "url": "https://pubmed.ncbi.nlm.nih.gov/17900370" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q1LYG0-1", "protein_name": "SH3 and PX domain-containing protein 2A", "gene_name": "sh3pxd2aa; sh3pxd2a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q1LUW2-1", "protein_name": "Neutrophil cytosol factor 4", "gene_name": "ncf4", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NC05-1", "protein_name": "NADPH oxidase organizer 1a", "gene_name": "noxo1a", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q1LYG0", "url": "https://www.uniprot.org/uniprotkb/Q1LYG0" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.17900370", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A Src-Tks5 pathway is required for neural crest cell migration during embryonic development.", "journal": "PLoS ONE", "date": "2011", "authors": "Murphy Danielle A, Diaz Bego\u00f1a, Bromann Paul A, Tsai Jeff H, Kawakami Yasuhiko, Maurer Jochen, Stewart Rodney A, Izpis\u00faa-Belmonte Juan Carlos, Courtneidge Sara A", "reference": { "type": "PubMed", "id": "21799874", "url": "https://pubmed.ncbi.nlm.nih.gov/21799874" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q1LYG0-1", "protein_name": "SH3 and PX domain-containing protein 2A", "gene_name": "sh3pxd2aa; 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Model. 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Genes Evol.", "date": "2007", "authors": "Cheng Lu, Chong Mei, Fan Weiwei, Guo Xiaofang, Zhang Wenjuan, Yang Xueyan, Liu Fan, Gui Yonghao, Lu Daru", "reference": { "type": "PubMed", "id": "17876603", "url": "https://pubmed.ncbi.nlm.nih.gov/17876603" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q2LE08-1", "protein_name": "Forkhead box protein P1-B", "gene_name": "foxp1b", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q2LE08", "url": "https://www.uniprot.org/uniprotkb/Q2LE08" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.17876603", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Bone morphogenetic protein-2 induces expression of murine zinc finger transcription factor ZNF450.", "journal": "J. Cell. Biochem.", "date": "2005", "authors": "Edgar AJ, Dover SL, Lodrick MN, McKay IJ, Hughes FJ, Turner W", "reference": { "type": "PubMed", "id": "15526281", "url": "https://pubmed.ncbi.nlm.nih.gov/15526281" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q52KB5-1", "protein_name": "Zinc finger and BTB domain-containing protein 24", "gene_name": "zbtb24", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q80X44-1", "protein_name": "Zinc finger and BTB domain-containing protein 24", "gene_name": "Zbtb24", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q3B725-1", "protein_name": "Zinc finger and BTB domain-containing protein 24", "gene_name": "Zbtb24", "tax_name": "Rat" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q52KB5", "url": "https://www.uniprot.org/uniprotkb/Q52KB5" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": 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}, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Pericentromeric hypomethylation elicits an interferon response in an animal model of ICF syndrome.", "journal": "Elife", "date": "2018", "authors": "Rajshekar Srivarsha, Yao Jun, Arnold Paige K, Payne Sara G, Zhang Yinwen, Bowman Teresa V, Schmitz Robert J, Edwards John R, Goll Mary", "reference": { "type": "PubMed", "id": "30484769", "url": "https://pubmed.ncbi.nlm.nih.gov/30484769" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q52KB5-1", "protein_name": "Zinc finger and BTB domain-containing protein 24", "gene_name": "zbtb24", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58JCA0-1", "protein_name": "Caspase b, like isoform X1", "gene_name": "caspbl", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1Q134-1", "protein_name": "Pentraxin family member", "gene_name": "apcs", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F6NVZ1-1", "protein_name": "Interferon alpha inducible protein 27.2", "gene_name": "ifi27.2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M2BET8-1", "protein_name": "Cell division cycle-associated protein 7a isoform X1", "gene_name": "cdca7a", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q52KB5", "url": "https://www.uniprot.org/uniprotkb/Q52KB5" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.30484769", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": 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[] } ] }, { "title": "FOXO genes in channel catfish and their response after bacterial infection.", "journal": "Dev. Comp. Immunol.", "date": "2019", "authors": "Gao Lei, Yuan Zihao, Zhou Tao, Yang Yujia, Gao Dongya, Dunham Rex, Liu Zhanjiang", "reference": { "type": "PubMed", "id": "30905685", "url": "https://pubmed.ncbi.nlm.nih.gov/30905685" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q52KB5-1", "protein_name": "Zinc finger and BTB domain-containing protein 24", "gene_name": "zbtb24", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q6PEI7-1", "protein_name": "CTP synthase 1", "gene_name": "ctps1a; ctps1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M9PNH6-1", "protein_name": "Glucocorticoid modulatory element-binding protein 1 isoform X1", "gene_name": "gmeb1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4IS45-1", "protein_name": "Conserved oligomeric Golgi complex subunit 6", "gene_name": "cog6", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5TZ35-1", "protein_name": "Visinin-like protein 1b", "gene_name": "vsnl1b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "X1WDT8-1", "protein_name": "AFG1 like ATPase a", "gene_name": "afg1la", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB13A3U1-1", "protein_name": "Osteopetrosis-associated transmembrane protein 1 precursor", "gene_name": "ostm1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M2B7K9-1", "protein_name": "Centrosomal protein 57kDa-like protein 1", "gene_name": "cep57l1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A5PF58-1", "protein_name": "Nuclear inhibitor of protein phosphatase 1", "gene_name": "ppp1r8a", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q52KB5", "url": "https://www.uniprot.org/uniprotkb/Q52KB5" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.30905685", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 9 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Uncovering Regulators of Heterochromatin Mediated Silencing Using a Zebrafish Transgenic Reporter.", "journal": "Front. Cell Dev. Biol.", "date": "2022", "authors": "Calvird Audrey E, Broniec Morgan N, Duval Katherine L, Higgs Alysha N, Arora Vani, Ha Lauren N, Schouten Erik B, Crippen Annabel R, McGrail Maura, Laue Kathrin, Goll Mary G", "reference": { "type": "PubMed", "id": "35356281", "url": "https://pubmed.ncbi.nlm.nih.gov/35356281" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q52KB5-1", "protein_name": "Zinc finger and BTB domain-containing protein 24", "gene_name": "zbtb24", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B0S6M0-1", "protein_name": "Histone-lysine N-methyltransferase", "gene_name": "suv39h1b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NDG8-1", "protein_name": "[histone H4]-N-methyl-L-lysine20 N-methyltransferase KMT5B", "gene_name": "kmt5c", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q52KB5", "url": "https://www.uniprot.org/uniprotkb/Q52KB5" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.35356281", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Integrative view of alpha2,3-sialyltransferases (ST3Gal) molecular and functional evolution in deuterostomes: significance of lineage-specific losses.", "journal": "Mol. Biol. Evol.", "date": "2015", "authors": "Petit Daniel, Teppa Elin, Mir Anne-Marie, Vicogne Doroth\u00e9e, Thisse Christine, Thisse Bernard, Filloux Cyril, Harduin-Lepers Anne", "reference": { "type": "PubMed", "id": "25534026", "url": "https://pubmed.ncbi.nlm.nih.gov/25534026" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q1LVL2-1", "protein_name": "Alanine--tRNA ligase", "gene_name": "aars1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q4VBV9-1", "protein_name": "Omega-amidase NIT2", "gene_name": "nit2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M9PLX6-1", "protein_name": "CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase", "gene_name": "st3gal3a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A2BID7-1", "protein_name": "PR domain zinc finger protein 10", "gene_name": "prdm10", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4IZG6-1", "protein_name": "Uncharacterized protein LOC541437", "gene_name": "ptbp2a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E9QGX9-1", "protein_name": "Atlastin-1", "gene_name": "atl1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1RD85-1", "protein_name": "Lysyl oxidase homolog 3A", "gene_name": "loxl3a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1N8E1-1", "protein_name": "BLOC-3 complex member HPS1", "gene_name": "hps1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB13A9C7-1", "protein_name": "Probable E3 SUMO-protein ligase RNF212", "gene_name": "rnf212", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B8A4P8-1", "protein_name": "NK1 transcription factor related 2-like,a", "gene_name": "nkx1.2la", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B8A507-1", "protein_name": "Leucine-rich repeat transmembrane protein FLRT3", "gene_name": "flrt3", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58HTI8-1", "protein_name": "Hydrocephalus-inducing protein homolog isoform X1", "gene_name": "hydin", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NHJ6-1", "protein_name": "Potassium channel subfamily K member 9", "gene_name": "kcnk9", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1RAC1-1", "protein_name": "Zinc finger and BTB domain-containing protein 11", "gene_name": "zbtb11", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q7T292-1", "protein_name": "Mitoferrin-2", "gene_name": "slc25a28", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M2B8Q7-1", "protein_name": "Sentrin-specific protease 7b isoform X1", "gene_name": "senp7b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M2BH47-1", "protein_name": "Copine-3", "gene_name": "cpne1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A5PM68-1", "protein_name": "Polypyrimidine tract-binding protein 2b", "gene_name": "ptbp2b", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q1LVL2", "url": "https://www.uniprot.org/uniprotkb/Q1LVL2" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.25534026", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 18 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": 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allele-specific genome editing in zebrafish.", "journal": "Biol. Open", "date": "2017", "authors": "Capon Samuel J, Baillie Gregory J, Bower Neil I, da Silva Jason A, Paterson Scott, Hogan Benjamin M, Simons Cas, Smith Kelly A", "reference": { "type": "PubMed", "id": "27895053", "url": "https://pubmed.ncbi.nlm.nih.gov/27895053" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q1LVL2-1", "protein_name": "Alanine--tRNA ligase", "gene_name": "aars1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB13A8A7-1", "protein_name": "Glycine--tRNA ligase", "gene_name": "gars1", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q1LVL2", "url": "https://www.uniprot.org/uniprotkb/Q1LVL2" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.27895053", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], 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