[ { "title": "Fish-specific N-terminal domain sequence in Connexin 39.4 plays an important role in zebrafish stripe formation by regulating the opening and closing of gap junctions and hemichannels.", "journal": "Biochim Biophys Acta Gen Subj", "date": "2023", "authors": "Watanabe Masakatsu", "reference": { "type": "PubMed", "id": "36889448", "url": "https://pubmed.ncbi.nlm.nih.gov/36889448" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QL21-1", "protein_name": "Gap junction protein", "gene_name": "gja5a", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QL21", "url": "https://www.uniprot.org/uniprotkb/F1QL21" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.36889448", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Enhanced transcription of complement and coagulation genes in the absence of adaptive immunity.", "journal": "Mol. Immunol.", "date": "2009", "authors": "Jima Dereje D, Shah Radhika N, Orcutt Timothy M, Joshi Deepa, Law J McHugh, Litman Gary W, Trede Nikolaus S, Yoder Jeffrey A", "reference": { "type": "PubMed", "id": "19200601", "url": "https://pubmed.ncbi.nlm.nih.gov/19200601" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QLC3-1", "protein_name": "coagulation factor Xa", "gene_name": "f10", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0ACD6B6F5-1", "protein_name": "Group XIIB secretory phospholipase A2-like protein", "gene_name": "pla2g12b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B8A565-1", "protein_name": "Complement component C9", "gene_name": "c9", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B8A5L6-1", "protein_name": "Fibrinogen alpha chain precursor", "gene_name": "fga", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E9QEQ1-1", "protein_name": "Apolipoprotein C-II", "gene_name": "apoc2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B8A5M6-1", "protein_name": "Protein disulfide-isomerase", "gene_name": "pdia2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4ITN2-1", "protein_name": "Vitamin D-binding protein", "gene_name": "gc", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QJN9-1", "protein_name": "Carboxypeptidase B", "gene_name": "cpb1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M6YZH0-1", "protein_name": "Sodium-coupled neutral amino acid transporter 4", "gene_name": "slc38a4", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1PEN2-1", "protein_name": "SHC SH2 domain-binding protein 1", "gene_name": "shcbp1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1PKY8-1", "protein_name": "Alpha-2-HS-glycoprotein 1 precursor", "gene_name": "ahsg1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB13A3K7-1", "protein_name": "Complement C4-B", "gene_name": "c4b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QDB3-1", "protein_name": "Dehydrogenase/reductase SDR family member 11", "gene_name": "dhrs11b.2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A5PMN5-1", "protein_name": "Acyl-CoA thioesterase 17", "gene_name": "acot17", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A5WWI5-1", "protein_name": "Alpha-2-HS-glycoprotein 2", "gene_name": "ahsg2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7F897-1", "protein_name": "3.4.17.20; 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Biophys. Acta", "date": "2012", "authors": "Sukardi Hendrian, Zhang Xiaoyan, Lui Eei Yin, Ung Choong Yong, Mathavan Sinnakaruppan, Gong Zhiyuan, Lam Siew Hong", "reference": { "type": "PubMed", "id": "22047996", "url": "https://pubmed.ncbi.nlm.nih.gov/22047996" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QLC3-1", "protein_name": "coagulation factor Xa", "gene_name": "f10", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1Q890-1", "protein_name": "Plasminogen", "gene_name": "plg", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1Q8T4-1", "protein_name": "Integrin alpha-9", "gene_name": "itga9", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1N1J9-1", "protein_name": "Glucose-6-phosphatase", "gene_name": "g6pc1a.1", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QLC3", "url": "https://www.uniprot.org/uniprotkb/F1QLC3" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.22047996", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "17beta-Estradiol and the glucocorticoid clobetasol propionate affect the blood coagulation cascade in zebrafish.", "journal": "Environ. Pollut.", "date": "2020", "authors": "Schmid Simon, Fent Karl", "reference": { "type": "PubMed", "id": "31887585", "url": "https://pubmed.ncbi.nlm.nih.gov/31887585" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QLC3-1", "protein_name": "coagulation factor Xa", "gene_name": "f10", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B0S6C1-1", "protein_name": "Tissue factor pathway inhibitor", "gene_name": "tfpia", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QLC3", "url": "https://www.uniprot.org/uniprotkb/F1QLC3" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.31887585", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Prostasin and hepatocyte growth factor B in factor VIIa generation: Serine protease knockdowns in zebrafish.", "journal": "Res. Pract. Thromb. Haemost.", "date": "2020", "authors": "Khandekar Gauri, Iyer Neha, Jagadeeswaran Pudur", "reference": { "type": "PubMed", "id": "33134781", "url": "https://pubmed.ncbi.nlm.nih.gov/33134781" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QLC3-1", "protein_name": "coagulation factor Xa", "gene_name": "f10", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1N826-1", "protein_name": "Uncharacterized protein LOC641564 precursor", "gene_name": "zgc:123295", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QLC3", "url": "https://www.uniprot.org/uniprotkb/F1QLC3" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.33134781", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "High-Resolution Proteomic Profiling Shows Sexual Dimorphism in Zebrafish Heart-Associated Proteins.", "journal": "J. Proteome Res.", "date": "2021", "authors": "Niksirat Hamid, Siino Valentina, Steinbach Christoph, Levander Fredrik", "reference": { "type": "PubMed", "id": "34185526", "url": "https://pubmed.ncbi.nlm.nih.gov/34185526" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QLC3-1", "protein_name": "coagulation factor Xa", "gene_name": "f10", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0ACD6B6J4-1", "protein_name": "C3/C5 convertase", "gene_name": "cfb", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B0UXN0-1", "protein_name": "Sulfhydryl oxidase", "gene_name": "qsox1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1Q5S6-1", "protein_name": "Uncharacterized aarF domain-containing protein kinase 5", "gene_name": "adck5", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1Q4N7-1", "protein_name": "Acidic leucine-rich nuclear phosphoprotein 32 family member", "gene_name": "anp32b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0ACD6B6R5-1", "protein_name": "Plasma protease C1 inhibitor isoform X1", "gene_name": "serping1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7F2M5-1", "protein_name": "MAC-inhibitory protein", "gene_name": "cd59a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M3B237-1", "protein_name": "GTPase-activating protein and VPS9 domain-containing protein 1", "gene_name": "gapvd1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M3B5N7-1", "protein_name": "Complement C3b.1 isoform X1", "gene_name": "c3b.1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q1L8D8-1", "protein_name": "Uncharacterized protein LOC322393 precursor; 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Haemost.", "date": "2024", "authors": "Ma Xinyan, Guo Ruixian, Xu Huibo, Ma Yuanyuan, Zhang Rui, Liu Xinyan, Zhang Jingpu, Han Ying", "reference": { "type": "PubMed", "id": "38104724", "url": "https://pubmed.ncbi.nlm.nih.gov/38104724" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QLC3-1", "protein_name": "coagulation factor Xa", "gene_name": "f10", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1Q890-1", "protein_name": "Plasminogen", "gene_name": "plg", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B0UY88-1", "protein_name": "Tissue factor", "gene_name": "f3b", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QLC3", "url": "https://www.uniprot.org/uniprotkb/F1QLC3" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.38104724", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "SCAR-6 elncRNA locus epigenetically regulates PROZ and modulates coagulation and vascular function.", "journal": "EMBO Rep.", "date": "2024", "authors": "Ranjan G., Sivasubbu S., Sehgal P., Scaria V.", "reference": { "type": "PubMed", "id": "39358551", "url": "https://pubmed.ncbi.nlm.nih.gov/39358551" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QLC3-1", "protein_name": "coagulation factor Xa", "gene_name": "f10", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QZU6-1", "protein_name": "Protein Z, vitamin K-dependent plasma glycoprotein b precursor", "gene_name": "prozb", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB32TNT1-1", "protein_name": "Vascular cell adhesion protein 1 isoform X1", "gene_name": "sc:d0202; 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Immunol.", "date": "2019", "authors": "Yu Guangqing, Liu Xing, Tang Jinhua, Xu Chenxi, Ouyang Gang, Xiao Wuhan", "reference": { "type": "PubMed", "id": "31293590", "url": "https://pubmed.ncbi.nlm.nih.gov/31293590" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QMF9-1", "protein_name": "Ubiquitin-like protein NEDD8", "gene_name": "nedd8", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QMF9", "url": "https://www.uniprot.org/uniprotkb/F1QMF9" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.31293590", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", 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"n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Toll-like receptor gene family and TIR-domain adapters in Danio rerio.", "journal": "Mol. Immunol.", "date": "2004", "authors": "Jault Cyril, Pichon Laurent, Chluba Johanna", "reference": { "type": "PubMed", "id": "14687933", "url": "https://pubmed.ncbi.nlm.nih.gov/14687933" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QMN8-1", "protein_name": "3.2.2.6; Toll-like receptor 21 precursor", "gene_name": "tlr21", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B8A691-1", "protein_name": "Toll-like receptor 4", "gene_name": "tlr4bb", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A2R8Q9M5-1", "protein_name": "Toll-like receptor 8b precursor", "gene_name": "tlr8b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A2R8RTN4-1", "protein_name": "Toll-like receptor 22 precursor", "gene_name": "tlr22", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58HG02-1", "protein_name": "Toll-like receptor 18 isoform X1", "gene_name": "tlr18", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QRG0-1", "protein_name": "Toll-like receptor 20, tandem duplicate 2", "gene_name": "tlr20.2", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QMN8", "url": "https://www.uniprot.org/uniprotkb/F1QMN8" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.14687933", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Expression analysis of the Toll-like receptor and TIR domain adaptor families of zebrafish.", "journal": "Mol. Immunol.", "date": "2004", "authors": "Meijer Annemarie H, Gabby Krens S F, Medina Rodriguez Indira A, He Shuning, Bitter Wilbert, Ewa Snaar-Jagalska B, Spaink Herman P", "reference": { "type": "PubMed", "id": "14687934", "url": "https://pubmed.ncbi.nlm.nih.gov/14687934" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QMN8-1", "protein_name": "3.2.2.6; Toll-like receptor 21 precursor", "gene_name": "tlr21", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B8A691-1", "protein_name": "Toll-like receptor 4", "gene_name": "tlr4bb", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A2R8Q9M5-1", "protein_name": "Toll-like receptor 8b precursor", "gene_name": "tlr8b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A2R8RTN4-1", "protein_name": "Toll-like receptor 22 precursor", "gene_name": "tlr22", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QWA8-1", "protein_name": "NAD(+) hydrolase SARM1", "gene_name": "sarm1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5XJ85-1", "protein_name": "Myeloid differentiation primary response protein MyD88", "gene_name": "myd88", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB32T1C5-1", "protein_name": "3.2.2.6; X-linked interleukin-1 receptor accessory protein-like 2", "gene_name": "il1rapl2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58HG08-1", "protein_name": "Toll-like receptor 19 isoform X1", "gene_name": "tlr19.1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58HG02-1", "protein_name": "Toll-like receptor 18 isoform X1", "gene_name": "tlr18", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QRG0-1", "protein_name": "Toll-like receptor 20, tandem duplicate 2", "gene_name": "tlr20.2", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QMN8", "url": "https://www.uniprot.org/uniprotkb/F1QMN8" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.14687934", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 10 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "MyD88 innate immune function in a zebrafish embryo infection model.", "journal": "Infect. Immun.", "date": "2006", "authors": "van der Sar Astrid M, Stockhammer Oliver W, van der Laan Carina, Spaink Herman P, Bitter Wilbert, Meijer Annemarie H", "reference": { "type": "PubMed", "id": "16552074", "url": "https://pubmed.ncbi.nlm.nih.gov/16552074" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QMN8-1", "protein_name": "3.2.2.6; Toll-like receptor 21 precursor", "gene_name": "tlr21", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B8A691-1", "protein_name": "Toll-like receptor 4", "gene_name": "tlr4bb", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A2R8Q9M5-1", "protein_name": "Toll-like receptor 8b precursor", "gene_name": "tlr8b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A2R8RTN4-1", "protein_name": "Toll-like receptor 22 precursor", "gene_name": "tlr22", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5XJ85-1", "protein_name": "Myeloid differentiation primary response protein MyD88", "gene_name": "myd88", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58HG02-1", "protein_name": "Toll-like receptor 18 isoform X1", "gene_name": "tlr18", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QRG0-1", "protein_name": "Toll-like receptor 20, tandem duplicate 2", "gene_name": "tlr20.2", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QMN8", "url": "https://www.uniprot.org/uniprotkb/F1QMN8" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.16552074", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Evolution of the zebrafish model: from development to immunity and infectious disease.", "journal": "Zebrafish", "date": "2005", "authors": "Phelps Hilary A, Neely Melody N", "reference": { "type": "PubMed", "id": "18248169", "url": "https://pubmed.ncbi.nlm.nih.gov/18248169" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QMN8-1", "protein_name": "3.2.2.6; Toll-like receptor 21 precursor", "gene_name": "tlr21", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58G0B8-1", "protein_name": "Novel immune-type receptor 1c isoform X1", "gene_name": "nitr1c", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58G3I5-1", "protein_name": "Novel immune-type receptor 3a isoform X1", "gene_name": "nitr3a; nitr3b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B8A691-1", "protein_name": "Toll-like receptor 4", "gene_name": "tlr4bb", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A2R8Q9M5-1", "protein_name": "Toll-like receptor 8b precursor", "gene_name": "tlr8b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A2R8RTN4-1", "protein_name": "Toll-like receptor 22 precursor", "gene_name": "tlr22", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1PDP1-1", "protein_name": "Novel immune-type receptor 4a isoform 6 precursor", "gene_name": "nitr4a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58HG08-1", "protein_name": "Toll-like receptor 19 isoform X1", "gene_name": "tlr19.1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58HG02-1", "protein_name": "Toll-like receptor 18 isoform X1", "gene_name": "tlr18", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QX13-1", "protein_name": "Complement C3a.3 precursor", "gene_name": "c3a.3", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QRG0-1", "protein_name": "Toll-like receptor 20, tandem duplicate 2", "gene_name": "tlr20.2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1P7C1-1", "protein_name": "3.4.21.43; Complement C3a.1 precursor", "gene_name": "c3a.1", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QMN8", "url": "https://www.uniprot.org/uniprotkb/F1QMN8" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.18248169", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 12 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Positive selection pressure within teleost Toll-like receptors tlr21 and tlr22 subfamilies and their response to temperature stress and microbial components in zebrafish.", "journal": "Mol. Biol. Rep.", "date": "2012", "authors": "Sundaram Arvind Y M, Consuegra Sonia, Kiron Viswanath, Fernandes Jorge M O", "reference": { "type": "PubMed", "id": "22729906", "url": "https://pubmed.ncbi.nlm.nih.gov/22729906" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QMN8-1", "protein_name": "3.2.2.6; Toll-like receptor 21 precursor", "gene_name": "tlr21", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QMN8", "url": "https://www.uniprot.org/uniprotkb/F1QMN8" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.22729906", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Identification and functional characterization of nonmammalian Toll-like receptor 20.", "journal": "Immunogenetics", "date": "2014", "authors": "Pietretti Danilo, Scheer Marleen, Fink Inge R, Taverne Nico, Savelkoul Huub F J, Spaink Herman P, Forlenza Maria, Wiegertjes Geert F", "reference": { "type": "PubMed", "id": "24327191", "url": "https://pubmed.ncbi.nlm.nih.gov/24327191" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QMN8-1", "protein_name": "3.2.2.6; 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U.S.A.", "date": "2020", "authors": "Veetil Aneesh T, Zou Junyi, Henderson Katharine W, Jani Maulik S, Shaik Shabana M, Sisodia Sangram S, Hale Melina E, Krishnan Yamuna", "reference": { "type": "PubMed", "id": "32554491", "url": "https://pubmed.ncbi.nlm.nih.gov/32554491" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QMN8-1", "protein_name": "3.2.2.6; Toll-like receptor 21 precursor", "gene_name": "tlr21", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58HG02-1", "protein_name": "Toll-like receptor 18 isoform X1", "gene_name": "tlr18", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QMN8", "url": "https://www.uniprot.org/uniprotkb/F1QMN8" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.32554491", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Identification and functional characterization of a fish-specific tlr19 in common carp (Cyprinus carpio L.) that recruits TRIF as an adaptor and induces ifn expression during the immune response.", "journal": "Vet. Res.", "date": "2021", "authors": "Shan Shijuan, Liu Rongrong, Feng Hanxiao, Meng Fei, Aizaz Muhanmmad, Yang Guiwen", "reference": { "type": "PubMed", "id": "34130754", "url": "https://pubmed.ncbi.nlm.nih.gov/34130754" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QMN8-1", "protein_name": "3.2.2.6; Toll-like receptor 21 precursor", "gene_name": "tlr21", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A2R8RTN4-1", "protein_name": "Toll-like receptor 22 precursor", "gene_name": "tlr22", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58HG02-1", "protein_name": "Toll-like receptor 18 isoform X1", "gene_name": "tlr18", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QRG0-1", "protein_name": "Toll-like receptor 20, tandem duplicate 2", "gene_name": "tlr20.2", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QMN8", "url": 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associates with a neurodevelopmental disorder characterised by microcephaly, epilepsy and autistic features.", "journal": "Journal of medical genetics", "date": "2018", "authors": "Marin-Valencia I, Novarino G, Johansen A, Rosti B, Issa MY, Musaev D, Bhat G, Scott E, Silhavy JL, Stanley V, Rosti RO, Gleeson JW, Imam FB, Zaki MS, Gleeson JG", "reference": { "type": "PubMed", "id": "28626029", "url": "https://pubmed.ncbi.nlm.nih.gov/28626029" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QMV3-1", "protein_name": "Trafficking protein particle complex subunit 6b", "gene_name": "trappc6b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q86SZ2-1", "protein_name": "Trafficking protein particle complex subunit 6B", "gene_name": "TRAPPC6B", "tax_name": "Human" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QMV3", "url": "https://www.uniprot.org/uniprotkb/F1QMV3" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.28626029", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "TCTEX1D2 mutations underlie Jeune asphyxiating thoracic dystrophy with impaired retrograde intraflagellar transport.", "journal": "Nature communications", "date": "2015", "authors": "Schmidts M, Hou Y, Cortes CR, Mans DA, Huber C, Boldt K, Patel M, van Reeuwijk J, Plaza JM, van Beersum SE, Yap ZM, Letteboer SJ, Taylor SP, Herridge W, Johnson CA, Scambler PJ, Ueffing M, Kayserili H, Krakow D, King SM, Beales PL, Al-Gazali L, Wicking C, Cormier-Daire V, Roepman R, Mitchison HM, Witman GB", "reference": { "type": "PubMed", "id": "26044572", "url": "https://pubmed.ncbi.nlm.nih.gov/26044572" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QMY1-1", "protein_name": "Dynein light chain Tctex-type protein 2B", "gene_name": "dynlt2b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q8WVS4-1", "protein_name": "Cytoplasmic dynein 2 intermediate chain 1", "gene_name": "DYNC2I1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WW35-1", "protein_name": "Dynein light chain Tctex-type protein 2B", "gene_name": "DYNLT2B", "tax_name": "Human" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QMY1", "url": "https://www.uniprot.org/uniprotkb/F1QMY1" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.26044572", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": 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"count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Bioinformatic analyses of zona pellucida genes in vertebrates and their expression in Nile tilapia.", "journal": "Fish Physiol. Biochem.", "date": "2018", "authors": "Wu Tianli, Cheng Yunying, Liu Zhilong, Tao Wenjing, Zheng Shuqing, Wang Deshou", "reference": { "type": "PubMed", "id": "29307115", "url": "https://pubmed.ncbi.nlm.nih.gov/29307115" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QMZ0-1", "protein_name": "Zona pellucida sperm-binding protein 4", "gene_name": "zp2.3", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB32TDU0-1", "protein_name": "Zona pellucida protein AX 2 isoform X1", "gene_name": "zpax2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1N2S0-1", "protein_name": "Zona pellucida glycoprotein 3f, tandem duplicate 2 precursor", "gene_name": "zp3f.2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1PLH2-1", "protein_name": "Zona pellucida protein AX 1 precursor", "gene_name": "zpax1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1R4N4-1", "protein_name": "Zona pellucida protein AX 4 precursor", "gene_name": "zpax4", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB40ED81-1", "protein_name": "Zona pellucida glycoprotein 3f, tandem duplicate 1 precursor", "gene_name": "zp3f.1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A8E7Q2-1", "protein_name": "Zona pellucida sperm-binding protein 3", "gene_name": "zp3d.2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5TYP5-1", "protein_name": "Zona pellucida sperm-binding protein 3", "gene_name": "zp3a.1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1P8M5-1", "protein_name": "Zona pellucida sperm-binding protein 3", "gene_name": "zp3c", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QMZ0", "url": "https://www.uniprot.org/uniprotkb/F1QMZ0" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.29307115", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 9 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Transcriptomic Analysis for Differentially Expressed Genes in Ovarian Follicle Activation in the Zebrafish.", "journal": "Front. Endocrinol.", "date": "2018", "authors": "Zhu Bo, Pardeshi Lakhansing, Chen Yingying, Ge Wei", "reference": { "type": "PubMed", "id": "30364302", "url": "https://pubmed.ncbi.nlm.nih.gov/30364302" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QMZ0-1", "protein_name": "Zona pellucida sperm-binding protein 4", "gene_name": "zp2.3", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5RFW5-1", "protein_name": "RING-type E3 ubiquitin transferase", "gene_name": "marchf4b", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QMZ0", "url": "https://www.uniprot.org/uniprotkb/F1QMZ0" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.30364302", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Evolution of the ATP-binding cassette (ABC) transporter superfamily in vertebrates.", "journal": "Annu. Rev. Genomics Hum. Genet.", "date": "2005", "authors": "Dean Michael, Annilo Tarmo", "reference": { "type": "PubMed", "id": "16124856", "url": "https://pubmed.ncbi.nlm.nih.gov/16124856" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QMZ9-1", "protein_name": "ATP-binding cassette sub-family C member 8 isoform X1", "gene_name": "abcc8", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B8A446-1", "protein_name": "P-type phospholipid transporter", "gene_name": "abca1a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4IGG8-1", "protein_name": "ATP-binding cassette sub-family G member 8", "gene_name": "abcg8", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7F2Y6-1", "protein_name": "P-type phospholipid transporter", "gene_name": "abca1b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7F6F7-1", "protein_name": "Iron-sulfur clusters transporter ABCB7, mitochondrial", "gene_name": "abcb7", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QCK2-1", "protein_name": "ATP-binding cassette sub-family B member 6", "gene_name": "abcb6a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1N2Y9-1", "protein_name": "Cystic fibrosis transmembrane conductance regulator", "gene_name": "abcc4", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1Q4Y1-1", "protein_name": "Lysosomal cobalamin transporter ABCD4", "gene_name": "abcd4", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A3KGZ4-1", "protein_name": "ABC-type oligopeptide transporter ABCB9", "gene_name": "abcb9", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QEL5-1", "protein_name": "Cholesterol transporter ABCA5", "gene_name": "abca5", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QZ64-1", "protein_name": "ATP-binding cassette sub-family F member 2", "gene_name": "abcf2a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q801W2-1", "protein_name": "ABC-type antigen peptide transporter", "gene_name": "tap2a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M2BBT3-1", "protein_name": "ATP-binding cassette sub-family C member 9 isoform X1", "gene_name": "abcc9", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QMZ9", "url": "https://www.uniprot.org/uniprotkb/F1QMZ9" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.16124856", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 13 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Identification and characterization of a novel member of the ATP-sensitive K+ channel subunit family, Kir6.3, in zebrafish.", "journal": "Physiol. Genomics", "date": "2006", "authors": "Zhang Changliang, Miki Takashi, Shibasaki Tadao, Yokokura Masaaki, Saraya Atsunori, Seino Susumu", "reference": { "type": "PubMed", "id": "16317080", "url": "https://pubmed.ncbi.nlm.nih.gov/16317080" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QMZ9-1", "protein_name": "ATP-binding cassette sub-family C member 8 isoform X1", "gene_name": "abcc8", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M2BBT3-1", "protein_name": "ATP-binding cassette sub-family C member 9 isoform X1", "gene_name": "abcc9", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QMZ9", "url": "https://www.uniprot.org/uniprotkb/F1QMZ9" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.16317080", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Evolution of the vertebrate ABC gene family: analysis of gene birth and death.", "journal": "Genomics", "date": "2006", "authors": "Annilo Tarmo, Chen Zhang-Qun, Shulenin Sergey, Costantino Julie, Thomas Lauren, Lou Hong, Stefanov Stefan, Dean Michael", "reference": { "type": "PubMed", "id": "16631343", "url": "https://pubmed.ncbi.nlm.nih.gov/16631343" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QMZ9-1", "protein_name": "ATP-binding cassette sub-family C member 8 isoform X1", "gene_name": "abcc8", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B8A446-1", "protein_name": "P-type phospholipid transporter", "gene_name": "abca1a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4IGG8-1", "protein_name": "ATP-binding cassette sub-family G member 8", "gene_name": "abcg8", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7F2Y6-1", "protein_name": "P-type phospholipid transporter", "gene_name": "abca1b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7F6F7-1", "protein_name": "Iron-sulfur clusters transporter ABCB7, mitochondrial", "gene_name": "abcb7", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QCK2-1", "protein_name": "ATP-binding cassette sub-family B member 6", "gene_name": "abcb6a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1N2Y9-1", "protein_name": "Cystic fibrosis transmembrane conductance regulator", "gene_name": "abcc4", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1Q4Y1-1", "protein_name": "Lysosomal cobalamin transporter ABCD4", "gene_name": "abcd4", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A3KGZ4-1", "protein_name": "ABC-type oligopeptide transporter ABCB9", "gene_name": "abcb9", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QEL5-1", "protein_name": "Cholesterol transporter ABCA5", "gene_name": "abca5", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QZ64-1", "protein_name": "ATP-binding cassette sub-family F member 2", "gene_name": "abcf2a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M2BBT3-1", "protein_name": "ATP-binding cassette sub-family C member 9 isoform X1", "gene_name": "abcc9", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QMZ9", "url": "https://www.uniprot.org/uniprotkb/F1QMZ9" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.16631343", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 12 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Control of metazoan heme homeostasis by a conserved multidrug resistance protein.", "journal": "Cell Metab.", "date": "2014", "authors": "Korolnek Tamara, Zhang Jianbing, Beardsley Simon, Scheffer George L, Hamza Iqbal", "reference": { "type": "PubMed", "id": "24836561", "url": "https://pubmed.ncbi.nlm.nih.gov/24836561" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QMZ9-1", "protein_name": "ATP-binding cassette sub-family C member 8 isoform X1", "gene_name": "abcc8", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "O15440-1", "protein_name": "ATP-binding cassette sub-family C member 5", "gene_name": "ABCC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9R1X5-1", "protein_name": "ATP-binding cassette sub-family C member 5", "gene_name": "Abcc5", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "A0A8M2BBT3-1", "protein_name": "ATP-binding cassette sub-family C member 9 isoform X1", "gene_name": "abcc9", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QMZ9", "url": "https://www.uniprot.org/uniprotkb/F1QMZ9" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.24836561", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Genome-wide analysis of the ATP-binding cassette (ABC) transporter gene family in sea lamprey and Japanese lamprey.", "journal": "BMC Genomics", "date": "2015", "authors": "Ren Jianfeng, Chung-Davidson Yu-Wen, Yeh Chu-Yin, Scott Camille, Brown Titus, Li Weiming", "reference": { "type": "PubMed", "id": "26047617", "url": "https://pubmed.ncbi.nlm.nih.gov/26047617" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QMZ9-1", "protein_name": "ATP-binding cassette sub-family C member 8 isoform X1", "gene_name": "abcc8", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4IGG8-1", "protein_name": "ATP-binding cassette sub-family G member 8", "gene_name": "abcg8", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58FWK7-1", "protein_name": "ATP-binding cassette sub-family F member 2", "gene_name": "abcf2b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7F2Y6-1", "protein_name": "P-type 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rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QMZ9", "url": "https://www.uniprot.org/uniprotkb/F1QMZ9" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.26047617", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 10 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { 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"count": 0 } ], "sort_fields": [] } ] }, { "title": "Modelling pancreatic beta-cell inflammation in zebrafish identifies the natural product wedelolactone for human islet protection.", "journal": "Dis. Model. Mech.", "date": "2019", "authors": "Delgadillo-Silva Luis Fernando, Tsakmaki Anastasia, Akhtar Nadeem, Franklin Zara J, Konantz Judith, Bewick Gavin A, Ninov Nikolay", "reference": { "type": "PubMed", "id": "30679186", "url": "https://pubmed.ncbi.nlm.nih.gov/30679186" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QMZ9-1", "protein_name": "ATP-binding cassette sub-family C member 8 isoform X1", "gene_name": "abcc8", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QMZ9", "url": "https://www.uniprot.org/uniprotkb/F1QMZ9" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.30679186", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "ATP-sensitive potassium channels in zebrafish cardiac and vascular smooth muscle.", "journal": "J. Physiol. (Lond.)", "date": "2022", "authors": "Singareddy Soma S, Roessler Helen I, McClenaghan Conor, Ikle Jennifer M, Tryon Robert C, van Haaften Gijs, Nichols Colin G", "reference": { "type": "PubMed", "id": "34820842", "url": "https://pubmed.ncbi.nlm.nih.gov/34820842" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QMZ9-1", "protein_name": "ATP-binding cassette sub-family C member 8 isoform X1", "gene_name": "abcc8", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M2BBT3-1", "protein_name": "ATP-binding cassette sub-family C member 9 isoform X1", "gene_name": "abcc9", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QMZ9", "url": "https://www.uniprot.org/uniprotkb/F1QMZ9" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.34820842", "abstract": "", "glycosylation": [], "mutagenesis": [], 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Mol. Genet.", "date": "2017", "authors": "Yao Likun, Chen Jing, Wu Xiaotong, Jia Shunji, Meng Anming", "reference": { "type": "PubMed", "id": "28985365", "url": "https://pubmed.ncbi.nlm.nih.gov/28985365" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QNA7-1", "protein_name": "Cohesin subunit SA", "gene_name": "stag1a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M2B8W4-1", "protein_name": "Abnormal spindle-like microcephaly-associated protein isoform X1", "gene_name": "aspm", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QNA7", "url": "https://www.uniprot.org/uniprotkb/F1QNA7" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.28985365", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Surprising conservation of schizophrenia risk genes in lower organisms reflects their essential function and the evolution of genetic liability.", "journal": "Schizophr. 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"protein_name": "Interferon phi 3 precursor", "gene_name": "ifnphi3", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B0S682-1", "protein_name": "Interferon regulatory factor 5", "gene_name": "irf5", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1RBF1-1", "protein_name": "Interleukin-20 receptor subunit alpha precursor", "gene_name": "il20ra", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5TLE6-1", "protein_name": "Interferon gamma related precursor", "gene_name": "ifng1r", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NIE6-1", "protein_name": "IkappaB kinase", "gene_name": "ikbkb", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M2BFB6-1", "protein_name": "Signal transducer and activator of transcription", "gene_name": "stat4", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M2B248-1", "protein_name": "Interferon regulatory factor 9", "gene_name": "irf9", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M2BFF0-1", "protein_name": "Cytokine receptor family member b2 isoform X1", "gene_name": "crfb2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58GMF7-1", "protein_name": "Interferon regulatory factor", "gene_name": "irf2a", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QNG2", "url": "https://www.uniprot.org/uniprotkb/F1QNG2" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.18039395", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 24 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": 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"count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The gene and virus-induced expression of IRF-5 in grass carp Ctenopharyngodon idella.", "journal": "Vet. Immunol. Immunopathol.", "date": "2010", "authors": "Xu Qiao Q, Chang Ming X, Xiao Fan S, Huang Bei, Nie Pin", "reference": { "type": "PubMed", "id": "19896215", "url": "https://pubmed.ncbi.nlm.nih.gov/19896215" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QNG2-1", "protein_name": "Interferon regulatory factor 7 isoform 1", "gene_name": "irf7", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1P3S1-1", "protein_name": "Interferon regulatory factor 2 isoform 1", "gene_name": "irf2b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q6PGZ7-1", "protein_name": "Interferon regulatory factor 6", "gene_name": "irf6", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B0S682-1", "protein_name": "Interferon regulatory factor 5", "gene_name": "irf5", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M2B248-1", "protein_name": "Interferon regulatory factor 9", "gene_name": "irf9", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QNG2", "url": "https://www.uniprot.org/uniprotkb/F1QNG2" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.19896215", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": 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"count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Administration of recombinant IFN1 protects zebrafish (Danio rerio) from ISKNV infection.", "journal": "Fish Shellfish Immunol.", "date": "2010", "authors": "Li Zhongsheng, Xu Xiaopeng, Huang Lichao, Wu Jianmin, Lu Qingxia, Xiang Zhiming, Liao Jingjing, Weng Shaoping, Yu Xiaoqiang, He Jianguo", "reference": { "type": "PubMed", "id": "20438850", "url": "https://pubmed.ncbi.nlm.nih.gov/20438850" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QNG2-1", "protein_name": "Interferon regulatory factor 7 isoform 1", "gene_name": "irf7", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B0S789-1", "protein_name": "Signal transducer and activator of transcription", "gene_name": "stat1b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1P3S1-1", "protein_name": "Interferon regulatory factor 2 isoform 1", "gene_name": "irf2b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NZ93-1", "protein_name": "Signal transducer and activator of transcription", "gene_name": "stat2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M2B248-1", "protein_name": "Interferon regulatory factor 9", "gene_name": "irf9", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QNG2", "url": "https://www.uniprot.org/uniprotkb/F1QNG2" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.20438850", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Global characterization of interferon regulatory factor (IRF) genes in vertebrates: glimpse of the diversification in evolution.", "journal": "BMC Immunol.", "date": "2010", "authors": "Huang Bei, Qi Zhi T, Xu Zhen, Nie Pin", "reference": { "type": "PubMed", "id": "20444275", "url": "https://pubmed.ncbi.nlm.nih.gov/20444275" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QNG2-1", "protein_name": "Interferon regulatory factor 7 isoform 1", "gene_name": "irf7", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q6PGZ7-1", "protein_name": "Interferon regulatory factor 6", "gene_name": "irf6", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NI50-1", "protein_name": "Interferon regulatory factor 4a", "gene_name": "irf4a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1PKC4-1", "protein_name": "Interferon regulatory factor", "gene_name": "irf1b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B0S682-1", "protein_name": "Interferon regulatory factor 5", "gene_name": "irf5", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M2B248-1", "protein_name": "Interferon regulatory factor 9", "gene_name": "irf9", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58GMF7-1", "protein_name": "Interferon regulatory factor", "gene_name": "irf2a", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QNG2", "url": "https://www.uniprot.org/uniprotkb/F1QNG2" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.20444275", "abstract": "", "glycosylation": [], 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{ "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Characteristics of the interferon regulatory factor pairs zfIRF5/7 and their stimulation expression by ISKNV Infection in zebrafish (Danio rerio).", "journal": "Dev. Comp. 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Biol.", "date": "2008", "authors": "Mei Jie, Zhang Qi-Ya, Li Zhi, Lin Shuo, Gui Jian-Fang", "reference": { "type": "PubMed", "id": "18514183", "url": "https://pubmed.ncbi.nlm.nih.gov/18514183" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QNI1-1", "protein_name": "Complement component 1, q subcomponent-like 4 like precursor", "gene_name": "cbln5", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QNI1", "url": "https://www.uniprot.org/uniprotkb/F1QNI1" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.18514183", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A zebrafish high throughput screening system used for Staphylococcus epidermidis infection marker discovery.", "journal": "BMC Genomics", "date": "2013", "authors": "Veneman Wouter J, Stockhammer Oliver W, de Boer Leonie, Zaat Sebastian A J, Meijer Annemarie H, Spaink Herman P", "reference": { "type": "PubMed", "id": "23586901", "url": "https://pubmed.ncbi.nlm.nih.gov/23586901" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QNI1-1", "protein_name": "Complement component 1, q subcomponent-like 4 like precursor", "gene_name": "cbln5", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1N5K1-1", "protein_name": "Chromobox homolog 7a", "gene_name": "cbx7a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NE07-1", "protein_name": "Placenta associated 8, tandem duplicate 2", "gene_name": "plac8.2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NUF6-1", "protein_name": "Intelectin 3 precursor", "gene_name": "itln3", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1N059-1", "protein_name": "Nuclear factor, interleukin 3 regulated, member 6", "gene_name": "nfil3-6", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B0UYM1-1", "protein_name": "Cis-aconitate decarboxylase", "gene_name": "acod1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1Q6I6-1", "protein_name": "Hemoglobin, alpha embryonic 5", "gene_name": "hbae5", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1Q9R5-1", "protein_name": "1.16.1.9; 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Dev.", "date": "1999", "authors": "Chuang J C, Mathers P H, Raymond P A", "reference": { "type": "PubMed", "id": "10473141", "url": "https://pubmed.ncbi.nlm.nih.gov/10473141" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O42357-1", "protein_name": "Retinal homeobox protein Rx2", "gene_name": "rx2", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "O42357", "url": "https://www.uniprot.org/uniprotkb/O42357" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.10473141", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Embryonic retinal gene expression in sonic-you mutant zebrafish.", "journal": "Dev. Dyn.", "date": "2002", "authors": "Stenkamp Deborah L, Frey Ruth A, Mallory Dianne E, Shupe Emily E", "reference": { "type": "PubMed", "id": "12412019", "url": "https://pubmed.ncbi.nlm.nih.gov/12412019" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O42357-1", "protein_name": "Retinal homeobox protein Rx2", "gene_name": "rx2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q8JIZ3-1", "protein_name": "Cone-rod homeobox protein", "gene_name": "crx", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "O42357", "url": "https://www.uniprot.org/uniprotkb/O42357" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.12412019", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": 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0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Loss of eyes in zebrafish caused by mutation of chokh/rx3.", "journal": "EMBO Rep.", "date": "2003", "authors": "Loosli Felix, Staub Wendy, Finger-Baier Karin C, Ober Elke A, Verkade Heather, Wittbrodt Joachim, Baier Herwig", "reference": { "type": "PubMed", "id": "12947416", "url": "https://pubmed.ncbi.nlm.nih.gov/12947416" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": 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"o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", 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Koshimizu E, Nakazato H, Itoh K, Kuraoka S, Komohara Y, Shiina M, Nakamura S, Kitajima M, Tsurusaki Y, Miyatake S, Ogata K, Iijima K, Matsumoto N, Miyake N", "reference": { "type": "PubMed", "id": "30427554", "url": "https://pubmed.ncbi.nlm.nih.gov/30427554" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QNV4-1", "protein_name": "Nuclear pore complex protein Nup133", "gene_name": "nup133", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q8WUM0-1", "protein_name": "Nuclear pore complex protein Nup133", "gene_name": "NUP133", "tax_name": "Human" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QNV4", "url": "https://www.uniprot.org/uniprotkb/F1QNV4" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.30427554", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": 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Cell. Biol.", "date": "2009", "authors": "Wittkopp Nadine, Huntzinger Eric, Weiler Catrin, Sauli\u00e8re J\u00e9r\u00f4me, Schmidt Steffen, Sonawane Mahendra, Izaurralde Elisa", "reference": { "type": "PubMed", "id": "19414594", "url": "https://pubmed.ncbi.nlm.nih.gov/19414594" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QNX7-1", "protein_name": "Regulator of nonsense transcripts 3B", "gene_name": "upf3b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B0S733-1", "protein_name": "Regulator of nonsense transcripts 3A", "gene_name": "upf3a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "C5J7W8-1", "protein_name": "Serine/threonine-protein kinase SMG1", "gene_name": "smg1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1R7R1-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG5", "gene_name": "smg5", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q1LVF3-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG7", "gene_name": "smg7", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4IZ84-1", "protein_name": "Telomerase-binding protein EST1A", "gene_name": "smg6", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1RCY6-1", "protein_name": "Regulator of nonsense transcripts 1", "gene_name": "upf1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q49SH1-1", "protein_name": "Sodium/potassium/calcium exchanger 5", "gene_name": "slc24a5", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QNX7", "url": "https://www.uniprot.org/uniprotkb/F1QNX7" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.19414594", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 8 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A morpholino-based screen to identify novel genes involved in craniofacial morphogenesis.", "journal": "Dev. Dyn.", "date": "2013", "authors": "Melvin Vida Senkus, Feng Weiguo, Hernandez-Lagunas Laura, Artinger Kristin Bruk, Williams Trevor", "reference": { "type": "PubMed", "id": "23559552", "url": "https://pubmed.ncbi.nlm.nih.gov/23559552" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QPX0-1", "protein_name": "Protein NDNF", "gene_name": "ndnf", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB32T3T1-1", "protein_name": "Metastasis-associated in colon cancer protein 1 isoform X1", "gene_name": "macc1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4IBQ5-1", "protein_name": "Protocadherin-20", "gene_name": "pcdh20l", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A2BF97-1", "protein_name": "Protein limb expression 1 homolog", "gene_name": "lix1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M2B6G9-1", "protein_name": "LIX1-like protein isoform X1", "gene_name": "lix1l", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB13A9W2-1", "protein_name": "Multiple epidermal growth factor-like domains protein 10", "gene_name": "megf10", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q1LVA5-1", "protein_name": "Ras-related protein Rab-25", "gene_name": "rab25a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QXS2-1", "protein_name": "Protein shisa-3 homolog precursor", "gene_name": "shisa3", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1R665-1", "protein_name": "Caveolae-associated protein 2b", "gene_name": "cavin2b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F8W3X3-1", "protein_name": "Protocadherin-19", "gene_name": "pcdh19", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB40E7W4-1", "protein_name": "PTB-containing, cubilin and LRP1-interacting protein", "gene_name": "pid1", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QPX0", "url": 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in Congenital Hypogonadotropic Hypogonadism.", "journal": "American journal of human genetics", "date": "2020", "authors": "Messina A, Pulli K, Santini S, Acierno J, Kansakoski J, Cassatella D, Xu C, Casoni F, Malone SA, Ternier G, Conte D, Sidis Y, Tommiska J, Vaaralahti K, Dwyer A, Gothilf Y, Merlo GR, Santoni F, Niederlander NJ, Giacobini P, Raivio T, Pitteloud N", "reference": { "type": "PubMed", "id": "31883645", "url": "https://pubmed.ncbi.nlm.nih.gov/31883645" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QPX0-1", "protein_name": "Protein NDNF", "gene_name": "ndnf", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q8C119-1", "protein_name": "Protein NDNF", "gene_name": "Ndnf", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8TB73-1", "protein_name": "Protein NDNF", "gene_name": "NDNF", "tax_name": "Human" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QPX0", "url": 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retinitis pigmentosa.", "journal": "Hum. Mol. Genet.", "date": "2014", "authors": "Chen X, Liu Y, Sheng X, Tam PO, Zhao K, Chen X, Rong W, Liu Y, Liu X, Pan X, Chen LJ, Zhao Q, Vollrath D, Pang CP, Zhao C", "reference": { "type": "PubMed", "id": "24419317", "url": "https://pubmed.ncbi.nlm.nih.gov/24419317" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QPY7-1", "protein_name": "Small nuclear ribonucleoprotein G", "gene_name": "snrpg", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B0S754-1", "protein_name": "U5 small nuclear ribonucleoprotein 200 kDa helicase", "gene_name": "snrnp200", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "O43172-1", "protein_name": "U4/U6 small nuclear ribonucleoprotein Prp4", "gene_name": "PRPF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "A0A2R8PWG5-1", "protein_name": "Pre-mRNA-processing factor 6", "gene_name": "prpf6", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M2B4I2-1", "protein_name": "Pre-mRNA-processing-splicing factor 8", "gene_name": "prpf8", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QPY7", "url": "https://www.uniprot.org/uniprotkb/F1QPY7" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.24419317", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Knocking Down Snrnp200 Initiates Demorphogenesis of Rod Photoreceptors in Zebrafish.", "journal": "J. Ophthalmol.", "date": "2015", "authors": "Liu Yuan, Chen Xue, Qin Bing, Zhao Kanxing, Zhao Qingshun, Staley Jonathan P, Zhao Chen", "reference": { "type": "PubMed", "id": "26137319", "url": "https://pubmed.ncbi.nlm.nih.gov/26137319" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QPY7-1", "protein_name": "Small nuclear ribonucleoprotein G", "gene_name": "snrpg", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B0S754-1", "protein_name": "U5 small nuclear ribonucleoprotein 200 kDa helicase", "gene_name": "snrnp200", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB13AAF3-1", "protein_name": "Cerebellin-1 precursor", "gene_name": "cbln1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A2R8PWG5-1", "protein_name": "Pre-mRNA-processing factor 6", "gene_name": "prpf6", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M2B4I2-1", "protein_name": "Pre-mRNA-processing-splicing factor 8", "gene_name": "prpf8", "tax_name": 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"o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Forward Genetic Screens in Zebrafish Identify Pre-mRNA-Processing Pathways Regulating Early T Cell Development.", "journal": "Cell Rep.", "date": "2016", "authors": "Iwanami Norimasa, Sikora Katarzyna, Richter Andreas S, M\u00f6nnich Maren, Guerri Lucia, Soza-Ried Cristian, Lawir Divine-Fondzenyuy, Mateos Fernando, Hess Isabell, O'Meara Connor P, Schorpp Michael, Boehm Thomas", "reference": { "type": "PubMed", "id": "27880902", "url": "https://pubmed.ncbi.nlm.nih.gov/27880902" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QPY7-1", "protein_name": "Small nuclear ribonucleoprotein G", "gene_name": "snrpg", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q567V5-1", "protein_name": "Small nuclear ribonucleoprotein Sm D2", "gene_name": "snrpd2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B0V351-1", "protein_name": "DNA polymerase epsilon catalytic subunit", 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screen in zebrafish embryogenesis.", "journal": "Genome Res.", "date": "2001", "authors": "Kudoh T, Tsang M, Hukriede N A, Chen X, Dedekian M, Clarke C J, Kiang A, Schultz S, Epstein J A, Toyama R, Dawid I B", "reference": { "type": "PubMed", "id": "11731487", "url": "https://pubmed.ncbi.nlm.nih.gov/11731487" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QQ04-1", "protein_name": "Serpin H1", "gene_name": "serpinh1b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q1LVM8-1", "protein_name": "Repulsive guidance molecule A", "gene_name": "rgma", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q4V9N1-1", "protein_name": "Translin", "gene_name": "tsn", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B8JL43-1", "protein_name": "Serotransferrin", "gene_name": "tfa", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A8DZ86-1", "protein_name": "Vasorin", "gene_name": "vasna", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": 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"Zebrafish" }, { "uniprot_canonical_ac": "A0AC58JQ56-1", "protein_name": "Tumor protein 63 (p63)", "gene_name": "tp63", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M3AT79-1", "protein_name": "POU domain protein", "gene_name": "pou2f2b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F2Z4U3-1", "protein_name": "Protein wntless homolog", "gene_name": "wls", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "X1WBB9-1", "protein_name": "RNA-binding protein Nova-2", "gene_name": "nova2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1PM54-1", "protein_name": "Enoyl-CoA hydratase domain-containing protein 2, mitochondrial", "gene_name": "echdc2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8N1Z3C4-1", "protein_name": "Hsp70-binding protein 1", "gene_name": "hspbp1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB13A9N8-1", "protein_name": "Regulator of G-protein signaling 3a isoform 2; Regulator of G-protein signaling 3a isoform X1", "gene_name": "rgs3a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8N1Z0K9-1", "protein_name": "Ski oncogene", "gene_name": "skia", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB32TPL0-1", "protein_name": "Methionine--tRNA ligase, cytoplasmic", "gene_name": "mars1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1N441-1", "protein_name": "XK-related protein", "gene_name": "xkr4", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B8A688-1", "protein_name": "Uncharacterized protein LOC563253", "gene_name": "si:ch211-198a12.6", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7F6A5-1", "protein_name": "Large ribosomal subunit protein uL29m", "gene_name": "mrpl47", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q568M3-1", "protein_name": "Cytokine receptor-like factor 3", "gene_name": "crlf3", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5RH29-1", "protein_name": "Inter-alpha-trypsin inhibitor heavy chain H2 precursor", "gene_name": "itih2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M9QJL3-1", "protein_name": "LIM domain only protein 7 isoform X1", "gene_name": "lmo7a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7FCG3-1", "protein_name": "Cyclic AMP-responsive element-binding protein 3-like protein 1 isoform X1", "gene_name": "creb3l1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E9QGL3-1", "protein_name": "Retinoid-binding protein 7a", "gene_name": "rbp7a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1Q6P4-1", "protein_name": "Tetraspanin", "gene_name": "cd82a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QFC4-1", "protein_name": "Nucleolar complex protein 2 homolog", "gene_name": "noc2l", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q8QHJ9-1", "protein_name": "Interleukin-17 receptor D", "gene_name": "il17rd", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q8QHL5-1", "protein_name": "Polyhomeotic-like protein 2", "gene_name": "phc2a; phc2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M2BH61-1", "protein_name": "VPS9 domain-containing protein 1 isoform X1", "gene_name": "vps9d1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M2BI85-1", "protein_name": "Arfaptin-1 isoform X5", "gene_name": "arfip1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M3AJH9-1", "protein_name": "MTSS I-BAR domain containing 2a isoform X1", "gene_name": "mtss1la", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1PEI8-1", "protein_name": "Dual specificity protein phosphatase", "gene_name": "dusp1", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QQ04", "url": "https://www.uniprot.org/uniprotkb/F1QQ04" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.11731487", "abstract": "", "glycosylation": [], "mutagenesis": 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Biochem. Physiol. C Toxicol. Pharmacol.", "date": "2004", "authors": "Keller Evan T, Murtha Jill M", "reference": { "type": "PubMed", "id": "15533791", "url": "https://pubmed.ncbi.nlm.nih.gov/15533791" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QQ04-1", "protein_name": "Serpin H1", "gene_name": "serpinh1b", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QQ04", "url": "https://www.uniprot.org/uniprotkb/F1QQ04" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.15533791", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Secretory COPII coat component Sec23a is essential for craniofacial chondrocyte maturation.", "journal": "Nat. Genet.", "date": "2006", "authors": "Lang Michael R, Lapierre Lynne A, Frotscher Michael, Goldenring James R, Knapik Ela W", "reference": { "type": "PubMed", "id": "16980978", "url": "https://pubmed.ncbi.nlm.nih.gov/16980978" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QQ04-1", "protein_name": "Serpin H1", "gene_name": "serpinh1b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q7SZE5-1", "protein_name": "Protein transport protein Sec23A", "gene_name": "sec23a", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QQ04", "url": "https://www.uniprot.org/uniprotkb/F1QQ04" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.16980978", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Gene expression profiling of zebrafish embryonic retinal pigment epithelium in vivo.", "journal": "Invest. Ophthalmol. Vis. Sci.", "date": "2007", "authors": "Leung Yuk Fai, Ma Ping, Dowling John E", "reference": { "type": "PubMed", "id": "17251491", "url": "https://pubmed.ncbi.nlm.nih.gov/17251491" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QQ04-1", "protein_name": "Serpin H1", "gene_name": "serpinh1b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5XJP1-1", "protein_name": "EARP-interacting protein homolog", "gene_name": "eipr1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q6VN46-1", "protein_name": "Myoglobin", "gene_name": "mb", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1N5Y9-1", "protein_name": "serine C-palmitoyltransferase", "gene_name": "sptlc2a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB40E4T4-1", "protein_name": "Nucleoside diphosphate kinase", "gene_name": "nme4", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q1ECZ9-1", "protein_name": "Arginine/serine-rich protein 1", "gene_name": "rsrp1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q1LXU2-1", "protein_name": "Collagen alpha-2(IX) chain precursor", "gene_name": "col9a2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QXE8-1", "protein_name": "beta-galactosidase", "gene_name": "glb1l", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F2Z4U5-1", "protein_name": "Cell cycle checkpoint control protein", "gene_name": "rad9a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB32U070-1", "protein_name": "Myoferlin isoform X1", "gene_name": "myof", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M2BI85-1", "protein_name": "Arfaptin-1 isoform X5", "gene_name": "arfip1", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QQ04", "url": "https://www.uniprot.org/uniprotkb/F1QQ04" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.17251491", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 11 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Genetic deletion of hspa8 leads to selective tissue malformations in zebrafish embryonic development.", "journal": "J. 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Cell Dev. 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activates retrotransposons to trigger antiviral signaling.", "journal": "Development", "date": "2017", "authors": "Chernyavskaya Yelena, Mudbhary Raksha, Zhang Chi, Tokarz Debra, Jacob Vinitha, Gopinath Smita, Sun Xiaochen, Wang Shuang, Magnani Elena, Madakashira Bhavani P, Yoder Jeffrey A, Hoshida Yujin, Sadler Kirsten C", "reference": { "type": "PubMed", "id": "28698226", "url": "https://pubmed.ncbi.nlm.nih.gov/28698226" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QR78-1", "protein_name": "Proteasome subunit beta", "gene_name": "psmb10", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M9NYI3-1", "protein_name": "Galectin 17", "gene_name": "igldcp", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB13A3K7-1", "protein_name": "Complement C4-B", "gene_name": "c4b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B8A492-1", "protein_name": "Interferon alpha inducible protein 27.4", "gene_name": "ifi27.4", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A2R8Q8Y8-1", "protein_name": "Chemokine (C-X-C motif) ligand 18a, duplicate 1 precursor", "gene_name": "cxcl18a.1", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QR78", "url": "https://www.uniprot.org/uniprotkb/F1QR78" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.28698226", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Whole genome duplications have provided teleosts with many roads to peptide loaded MHC class I molecules.", "journal": "BMC Evol. Biol.", "date": "2018", "authors": "Grimholt Unni", "reference": { "type": "PubMed", "id": "29471808", "url": "https://pubmed.ncbi.nlm.nih.gov/29471808" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QR78-1", "protein_name": "Proteasome subunit beta", "gene_name": "psmb10", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7F1G6-1", "protein_name": "Beta-2-microglobulin", "gene_name": "b2ml", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4IL29-1", "protein_name": "Calreticulin", "gene_name": "calr3b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1N1K6-1", "protein_name": "Protein disulfide-isomerase", "gene_name": "pdia8", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q801W2-1", "protein_name": "ABC-type antigen peptide transporter", "gene_name": "tap2a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NXI0-1", "protein_name": "Protein disulfide-isomerase", "gene_name": "pdia3", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q9PUS3-1", "protein_name": "Proteasome subunit beta", "gene_name": "psmb9a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q1LWY1-1", "protein_name": "Proteasome subunit beta", "gene_name": "psmb13a", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QR78", "url": "https://www.uniprot.org/uniprotkb/F1QR78" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.29471808", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 8 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Sec24D-dependent transport of extracellular matrix proteins is required for zebrafish skeletal morphogenesis.", "journal": "PLoS ONE", "date": "2010", "authors": "Sarmah Swapnalee, Barrallo-Gimeno Alejandro, Melville David B, Topczewski Jacek, Solnica-Krezel Lilianna, Knapik Ela W", "reference": { "type": "PubMed", "id": "20442775", "url": "https://pubmed.ncbi.nlm.nih.gov/20442775" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QRB4-1", "protein_name": "Protein transport protein Sec24D", "gene_name": "sec24d", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0ACD6B7B6-1", "protein_name": "Protein transport protein Sec24C isoform X1", "gene_name": "sec24c", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QRB4", "url": "https://www.uniprot.org/uniprotkb/F1QRB4" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.20442775", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The feelgood mutation in zebrafish dysregulates COPII-dependent secretion of select extracellular matrix proteins in skeletal morphogenesis.", "journal": "Dis. Model. Mech.", "date": "2011", "authors": "Melville David B, Montero-Balaguer Mercedes, Levic Daniel S, Bradley Kevin, Smith Jeffrey R, Hatzopoulos Antonis K, Knapik Ela W", "reference": { "type": "PubMed", "id": "21729877", "url": "https://pubmed.ncbi.nlm.nih.gov/21729877" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QRB4-1", "protein_name": "Protein transport protein Sec24D", "gene_name": "sec24d", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q1LWH3-1", "protein_name": "Membrane-bound transcription factor site-1 protease", "gene_name": "mbtps1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0ACD6B7B6-1", "protein_name": "Protein transport protein Sec24C isoform X1", "gene_name": "sec24c", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A1L224-1", "protein_name": "Cyclic AMP-responsive element-binding protein 3-like protein 2", "gene_name": "creb3l2", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QRB4", "url": "https://www.uniprot.org/uniprotkb/F1QRB4" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.21729877", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Modulation of the secretory pathway rescues zebrafish polycystic kidney disease pathology.", "journal": "J. Am. Soc. 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