[ { "title": "Redundant roles of PRDM family members in zebrafish craniofacial development.", "journal": "Dev. Dyn.", "date": "2013", "authors": "Ding Hai-Lei, Clouthier David E, Artinger Kristin B", "reference": { "type": "PubMed", "id": "23109401", "url": "https://pubmed.ncbi.nlm.nih.gov/23109401" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1Q8J8-1", "protein_name": "PR domain zinc finger protein 5", "gene_name": "prdm5", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A2BID7-1", "protein_name": "PR domain zinc finger protein 10", "gene_name": "prdm10", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1Q8J8", "url": "https://www.uniprot.org/uniprotkb/F1Q8J8" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.23109401", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A novel inducible mutagenesis screen enables to isolate and clone both embryonic and adult zebrafish mutants.", "journal": "Sci. Rep.", "date": "2017", "authors": "Ma Zhipeng, Zhu Peipei, Pang Meijun, Guo Liwei, Chang Nannan, Zheng Jiyuan, Zhu Xiaojun, Gao Ce, Huang Honghui, Cui Zongbin, Xiong Jing-Wei, Peng Jinrong, Chen Jun", "reference": { "type": "PubMed", "id": "28871129", "url": "https://pubmed.ncbi.nlm.nih.gov/28871129" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1Q8J8-1", "protein_name": "PR domain zinc finger protein 5", "gene_name": "prdm5", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B0UXY9-1", "protein_name": "FAS-associated factor 1", "gene_name": "faf1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M3AU43-1", "protein_name": "Delta-sarcoglycan isoform X4", "gene_name": "sgcd", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M3B826-1", "protein_name": "Polypeptide N-acetylgalactosaminyltransferase", "gene_name": "galnt2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M6Z5Z8-1", "protein_name": "Synaptotagmin-10 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Biol.", "date": "2010", "authors": "Li Qiang, Ritter Deborah, Yang Nan, Dong Zhiqiang, Li Hao, Chuang Jeffrey H, Guo Su", "reference": { "type": "PubMed", "id": "19850031", "url": "https://pubmed.ncbi.nlm.nih.gov/19850031" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1Q8W8-1", "protein_name": "Calreticulin", "gene_name": "calr", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q6NW76-1", "protein_name": "Aurora kinase B", "gene_name": "aurkb", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E9QFU8-1", "protein_name": "Branched-chain-amino-acid aminotransferase", "gene_name": "bcat2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1R9F5-1", "protein_name": "Class E basic helix-loop-helix protein 22", "gene_name": "bhlhe22", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1Q8W8", "url": "https://www.uniprot.org/uniprotkb/F1Q8W8" } ], "common_name": 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"date": "2013", "authors": "Tao Ting, Shi Hui, Huang Delai, Peng Jinrong", "reference": { "type": "PubMed", "id": "23593122", "url": "https://pubmed.ncbi.nlm.nih.gov/23593122" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1Q8W8-1", "protein_name": "Calreticulin", "gene_name": "calr", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QPY7-1", "protein_name": "Small nuclear ribonucleoprotein G", "gene_name": "snrpg", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1N004-1", "protein_name": "Cytochrome P450 2AA4", "gene_name": "cyp2aa4", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NAI0-1", "protein_name": "Krueppel-like factor 11b", "gene_name": "klf11b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB13AB14-1", "protein_name": "Glutamine--tRNA ligase", "gene_name": "qars1", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": 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trafficking of synaptic proteins in cone photoreceptor inner segments.", "journal": "PLoS ONE", "date": "2014", "authors": "George Ashley A, Hayden Sara, Holzhausen Lars C, Ma Eva Y, Suzuki Sachihiro C, Brockerhoff Susan E", "reference": { "type": "PubMed", "id": "24392132", "url": "https://pubmed.ncbi.nlm.nih.gov/24392132" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1Q8W8-1", "protein_name": "Calreticulin", "gene_name": "calr", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4IVS5-1", "protein_name": "Alpha-mannosidase", "gene_name": "man2a1", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1Q8W8", "url": "https://www.uniprot.org/uniprotkb/F1Q8W8" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.24392132", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], 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}, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Robustness analysis on interspecies interaction network for iron and glucose competition between Candida albicans and zebrafish during infection.", "journal": "BMC Syst. Biol.", "date": "2014", "authors": "Lin Che, Lin Chin-Nan, Wang Yu-Chao, Liu Fang-Yu, Chien Yu-Wen, Chuang Yung-Jen, Lan Chung-Yu, Hsieh Wen-Ping, Chen Bor-Sen", "reference": { "type": "PubMed", "id": "25603810", "url": "https://pubmed.ncbi.nlm.nih.gov/25603810" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1Q8W8-1", "protein_name": "Calreticulin", "gene_name": "calr", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QSI9-1", "protein_name": "Solute carrier family 3 member 2a", "gene_name": "slc3a2a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A9C458-1", "protein_name": "Phospholipase A2", "gene_name": "pla2g1b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M3B909-1", "protein_name": "Protein kinase C", "gene_name": "prkcq", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5RGT2-1", "protein_name": "Choline/ethanolamine transporter FLVCR1", "gene_name": "flvcr1", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1Q8W8", "url": "https://www.uniprot.org/uniprotkb/F1Q8W8" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.25603810", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { 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"o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "In vivo imaging of calcium dynamics in zebrafish hepatocytes.", "journal": "Hepatology", "date": "2023", "authors": "Pozo-Morales Macarena, Garteizgogeascoa In\u00e9s, Perazzolo Camille, So Juhoon, Shin Donghun, Singh Sumeet Pal", "reference": { "type": "PubMed", "id": "35829917", "url": "https://pubmed.ncbi.nlm.nih.gov/35829917" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1Q8W8-1", "protein_name": "Calreticulin", "gene_name": "calr", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0ACD6B7I4-1", "protein_name": "Calcium-transporting ATPase", "gene_name": "atp2a2b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E9QDP8-1", "protein_name": "Interleukin-7 receptor subunit alpha isoform X1; Interleukin-7 receptor subunit alpha precursor", "gene_name": "il7r", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A4IG19-1", "protein_name": "Alpha-1,4 glucan phosphorylase", "gene_name": 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Quality assurance of hematopoietic stem cells by macrophages determines stem cell clonality.", "journal": "Science", "date": "2022", "authors": "Wattrus Samuel J, Smith Mackenzie L, Rodrigues Cecilia Pessoa, Hagedorn Elliott J, Kim Ji Wook, Budnik Bogdan, Zon Leonard I", "reference": { "type": "PubMed", "id": "36137040", "url": "https://pubmed.ncbi.nlm.nih.gov/36137040" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1Q8W8-1", "protein_name": "Calreticulin", "gene_name": "calr", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB13A8S4-1", "protein_name": "non-specific serine/threonine protein kinase", "gene_name": "ern1", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1Q8W8", "url": "https://www.uniprot.org/uniprotkb/F1Q8W8" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.36137040", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", 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Sci Alliance", "date": "2022", "authors": "Uszczynska-Ratajczak Barbara, Sugunan Sreedevi, Kwiatkowska Monika, Migdal Maciej, Carbonell-Sala Silvia, Sokol Anna, Winata Cecilia L, Chacinska Agnieszka", "reference": { "type": "PubMed", "id": "36283702", "url": "https://pubmed.ncbi.nlm.nih.gov/36283702" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1Q8W8-1", "protein_name": "Calreticulin", "gene_name": "calr", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B8A5J2-1", "protein_name": "Cytochrome c oxidase assembly factor 6 homolog", "gene_name": "coa6", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QCK2-1", "protein_name": "ATP-binding cassette sub-family B member 6", "gene_name": "abcb6a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4IPV5-1", "protein_name": "Protein disulfide-isomerase", "gene_name": "p4hb", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q9W762-1", "protein_name": "Mitochondrial import inner membrane translocase subunit Tim9", "gene_name": "timm9", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "X1WBS5-1", "protein_name": "Mitochondrial import receptor subunit TOM6 homolog", "gene_name": "tomm6", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1N7T9-1", "protein_name": "Reticulocalbin-2 precursor", "gene_name": "rcn2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7F658-1", "protein_name": "Large ribosomal subunit protein mL52", "gene_name": "mrpl52", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1Q729-1", "protein_name": "1.1.1.41; 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Rep.", "date": "2023", "authors": "Haws William, England Samantha, Grieb Ginny, Susana Gabriela, Hernandez Sophie, Mirer Hunter, Lewis Katharine", "reference": { "type": "PubMed", "id": "36670152", "url": "https://pubmed.ncbi.nlm.nih.gov/36670152" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1Q8W8-1", "protein_name": "Calreticulin", "gene_name": "calr", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q504H8-1", "protein_name": "Homeobox protein HMX3", "gene_name": "hmx3a; hmx3", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E9QH74-1", "protein_name": "High mobility group nucleosome-binding domain-containing protein 3", "gene_name": "hmgn3", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QDD1-1", "protein_name": "Protein arginine N-methyltransferase 2", "gene_name": "prmt2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q801V3-1", "protein_name": "Antizyme inhibitor 1b", "gene_name": "azin1b", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1Q8W8", "url": "https://www.uniprot.org/uniprotkb/F1Q8W8" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.36670152", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Systematic Identification of Long Noncoding RNAs during Three Key Organogenesis Stages in Zebrafish.", "journal": "Int. J. Mol. Sci.", "date": "2024", "authors": "Zhou Chune, Li Mengting, Sun Yaoyi, Sultan Yousef, Li Xiaoyu", "reference": { "type": "PubMed", "id": "38542412", "url": "https://pubmed.ncbi.nlm.nih.gov/38542412" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1Q8W8-1", "protein_name": "Calreticulin", "gene_name": "calr", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "O57418-1", "protein_name": "Paired box protein Pax-7a isoform PAX7C", "gene_name": "pax7a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8N7UZK3-1", "protein_name": "Homeobox protein Nkx-2.5", "gene_name": "nkx2.5", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A9C3S0-1", "protein_name": "methylcrotonoyl-CoA carboxylase", "gene_name": "si:ch211-198n5.11", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A9C3S4-1", "protein_name": "Torsin-3A precursor", "gene_name": "tor3a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A8HAM3-1", "protein_name": "Serum response factor", "gene_name": "srfa", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1Q8W8", "url": "https://www.uniprot.org/uniprotkb/F1Q8W8" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.38542412", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Sequence characterization of teleost fish melanocortin receptors.", "journal": "Ann. N. Y. Acad. Sci.", "date": "2003", "authors": "Logan Darren W, Bryson-Richardson Robert J, Taylor Martin S, Currie Peter, Jackson Ian J", "reference": { "type": "PubMed", "id": "12851332", "url": "https://pubmed.ncbi.nlm.nih.gov/12851332" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1Q9X6-1", "protein_name": "Melanocortin receptor 5", "gene_name": "mc5rb", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q7ZTA2-1", "protein_name": "Melanocyte-stimulating hormone receptor", "gene_name": "mc2r", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QQG9-1", "protein_name": "Melanocortin receptor 3", "gene_name": "mc3r", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1Q9X6", "url": "https://www.uniprot.org/uniprotkb/F1Q9X6" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.12851332", "abstract": 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Biochem.", "date": "2019", "authors": "Liao Shengchen, Dong Jingjing, Xu Weina, Xi Bingwen, Tao Yaxiong, Liu Bo, Xie Jun", "reference": { "type": "PubMed", "id": "30288633", "url": "https://pubmed.ncbi.nlm.nih.gov/30288633" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1Q9X6-1", "protein_name": "Melanocortin receptor 5", "gene_name": "mc5rb", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1Q9X6", "url": "https://www.uniprot.org/uniprotkb/F1Q9X6" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.30288633", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Agouti-Related Protein 2 Is a New Player in the Teleost Stress Response System.", "journal": "Curr. Biol.", "date": "2019", "authors": "Shainer Inbal, Michel Maximilian, Marquart Gregory D, Bhandiwad Ashwin A, Zmora Nilli, Ben-Moshe Livne Zohar, Zohar Yonathan, Hazak Adi, Mazon Yael, F\u00f6rster Dominique, Hollander-Cohen Lian, Cone Roger D, Burgess Harold A, Gothilf Yoav", "reference": { "type": "PubMed", "id": "31178320", "url": "https://pubmed.ncbi.nlm.nih.gov/31178320" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1Q9X6-1", "protein_name": "Melanocortin receptor 5", "gene_name": "mc5rb", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QQG9-1", "protein_name": "Melanocortin receptor 3", "gene_name": "mc3r", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1Q9X6", "url": "https://www.uniprot.org/uniprotkb/F1Q9X6" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.31178320", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Role of the Melanocortin System in Gonadal Steroidogenesis of Zebrafish.", "journal": "Animals (Basel)", "date": "2022", "authors": "Navarro Sandra, Crespo Diego, Schulz R\u00fcdiger W, Ge Wei, Rotllant Josep, Cerd\u00e1-Reverter Jos\u00e9 Miguel, Rocha Ana", "reference": { "type": "PubMed", "id": "36290123", "url": "https://pubmed.ncbi.nlm.nih.gov/36290123" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1Q9X6-1", "protein_name": "Melanocortin receptor 5", "gene_name": "mc5rb", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q7ZTA2-1", "protein_name": "Melanocyte-stimulating hormone receptor", "gene_name": "mc2r", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F8W4H9-1", "protein_name": "Melanocortin-2 receptor accessory protein 2A", "gene_name": "mrap2a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB13AAB4-1", "protein_name": "Melanocortin-2 receptor accessory protein", "gene_name": "mrap", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NCD8-1", "protein_name": "Proopiomelanocortin b isoform X1; 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Dyn.", "date": "2006", "authors": "Okuda Yuich, Yoda Hiroki, Uchikawa Masanori, Furutani-Seiki Makoto, Takeda Hiroyuki, Kondoh Hisato, Kamachi Yusuke", "reference": { "type": "PubMed", "id": "16408288", "url": "https://pubmed.ncbi.nlm.nih.gov/16408288" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QA15-1", "protein_name": "Gamma-tubulin complex component 3 isoform X1", "gene_name": "tubgcp3", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q2Z1R2-1", "protein_name": "Transcription factor Sox-1b", "gene_name": "sox1b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "P47792-1", "protein_name": "Transcription factor Sox-19a", "gene_name": "sox19a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q6DGL6-1", "protein_name": "Transcription factor Sox-1a", "gene_name": "sox1a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q6EJB7-1", "protein_name": "Transcription factor Sox-3", "gene_name": "sox3", "tax_name": "Zebrafish" }, { 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"field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", 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Biol.", "date": "2007", "authors": "Liu Jianxiong, Lessman Charles A", "reference": { "type": "PubMed", "id": "17293149", "url": "https://pubmed.ncbi.nlm.nih.gov/17293149" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QA15-1", "protein_name": "Gamma-tubulin complex component 3 isoform X1", "gene_name": "tubgcp3", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QA15", "url": "https://www.uniprot.org/uniprotkb/F1QA15" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.17293149", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": 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"count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": 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Mol. Neurosci.", "date": "2019", "authors": "Li Guobao, Jin Daqing, Zhong Tao P", "reference": { "type": "PubMed", "id": "31178691", "url": "https://pubmed.ncbi.nlm.nih.gov/31178691" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QA15-1", "protein_name": "Gamma-tubulin complex component 3 isoform X1", "gene_name": "tubgcp3", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QA15", "url": "https://www.uniprot.org/uniprotkb/F1QA15" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.31178691", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Expression of three P4-phospholipid flippases-atp11a, atp11b, and atp11c in zebrafish (Danio rerio).", "journal": "Gene Expr. Patterns", "date": "2020", "authors": "Hawkey-Noble Alexia, Umali Jurgienne, Fowler Gerissa, French Curtis R", "reference": { "type": "PubMed", "id": "32344036", "url": "https://pubmed.ncbi.nlm.nih.gov/32344036" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QA15-1", "protein_name": "Gamma-tubulin complex component 3 isoform X1", "gene_name": "tubgcp3", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4IH35-1", "protein_name": "Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial", "gene_name": "mccc1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7F301-1", "protein_name": "Coagulation factor IX", "gene_name": "f9a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q2I6J0-1", "protein_name": "Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 2B", "gene_name": "inppl1b", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QA15", "url": "https://www.uniprot.org/uniprotkb/F1QA15" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.32344036", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Xgrip109: a gamma tubulin-associated protein with an essential role in gamma tubulin ring complex (gammaTuRC) assembly and centrosome function.", "journal": "J. 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Med.", "date": "2019", "authors": "Tilghman Joseph M, Ling Albee Y, Turner Tychele N, Sosa Maria X, Krumm Niklas, Chatterjee Sumantra, Kapoor Ashish, Coe Bradley P, Nguyen Khanh-Dung H, Gupta Namrata, Gabriel Stacey, Eichler Evan E, Berrios Courtney, Chakravarti Aravinda", "reference": { "type": "PubMed", "id": "30970187", "url": "https://pubmed.ncbi.nlm.nih.gov/30970187" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QAA7-1", "protein_name": "Propionate--CoA ligase", "gene_name": "acss2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q1LYG0-1", "protein_name": "SH3 and PX domain-containing protein 2A", "gene_name": "sh3pxd2aa; sh3pxd2a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q6PBP3-1", "protein_name": "Peroxiredoxin-like 2A", "gene_name": "prxl2a; selenou1a", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QAA7", "url": "https://www.uniprot.org/uniprotkb/F1QAA7" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.30970187", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Probiotic Modulation of Lipid Metabolism Disorders Caused by Perfluorobutanesulfonate Pollution in Zebrafish.", "journal": "Environ. Sci. 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J. Dev. Biol.", "date": "2011", "authors": "Chiarelli Nicola, Ritelli Marco, Zoppi Nicoletta, Benini Anna, Borsani Giuseppe, Barlati Sergio, Colombi Marina", "reference": { "type": "PubMed", "id": "21553381", "url": "https://pubmed.ncbi.nlm.nih.gov/21553381" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QB90-1", "protein_name": "non-specific serine/threonine protein kinase", "gene_name": "tp53rk", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1R0H0-1", "protein_name": "Solute carrier family 2, facilitated glucose transporter member 10", "gene_name": "slc2a10", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QB90", "url": "https://www.uniprot.org/uniprotkb/F1QB90" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.21553381", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Full transcriptome analysis of early dorsoventral patterning in zebrafish.", "journal": "PLoS ONE", "date": "2013", "authors": "Fodor Erika, Zsigmond \u00c1ron, Horv\u00e1th Bal\u00e1zs, Moln\u00e1r J\u00e1nos, Nagy Istv\u00e1n, T\u00f3th G\u00e1bor, Wilson Stephen W, Varga M\u00e1t\u00e9", "reference": { "type": "PubMed", "id": "23922899", "url": "https://pubmed.ncbi.nlm.nih.gov/23922899" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QBE2-1", "protein_name": "Deoxyribonuclease", "gene_name": "dnase1l1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7F3S4-1", "protein_name": "mRNA decay activator protein ZFP36", "gene_name": "cb81", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7F7B8-1", "protein_name": "Immediate early response 2b", "gene_name": "ier2b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B7SXM5-1", "protein_name": "Immediate early response gene 2 protein", "gene_name": "ier2a; ier2", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QBE2", "url": "https://www.uniprot.org/uniprotkb/F1QBE2" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.23922899", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Knockout of DNase1l1l abrogates lens denucleation process and causes cataract in zebrafish.", "journal": "Biochim. Biophys. Acta", "date": "2020", "authors": "Zhang Jing, Cui Wen-Wen, Du Chunxiao, Huang Yuwen, Pi Xiahui, Guo Wenya, Wang Jungai, Huang Weikang, Chen Danling, Li Jing, Li Hui, Zhang Jun, Ma Yuanfang, Mu Hongmei, Zhang Shuman, Liu Mugen, Cui Xiukun, Hu Yanzhong", "reference": { "type": "PubMed", "id": "32061775", "url": "https://pubmed.ncbi.nlm.nih.gov/32061775" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QBE2-1", "protein_name": "Deoxyribonuclease", "gene_name": "dnase1l1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5CZP2-1", "protein_name": "Heat shock factor protein 4", "gene_name": "hsf4", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QBE2", "url": "https://www.uniprot.org/uniprotkb/F1QBE2" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.32061775", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Defining the origins and evolution of the chemokine/chemokine receptor system.", "journal": "J. Immunol.", "date": "2006", "authors": "DeVries Mark E, Kelvin Alyson A, Xu Luoling, Ran Longsi, Robinson John, Kelvin David J", "reference": { "type": "PubMed", "id": "16365434", "url": "https://pubmed.ncbi.nlm.nih.gov/16365434" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QBE9-1", "protein_name": "C-C motif chemokine 25", "gene_name": "ccl25b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0G2L2I4-1", "protein_name": "C-C motif chemokine", "gene_name": "ccl36.1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4IPJ5-1", "protein_name": "Chemokine (C-C motif) ligand 34b, duplicate 1 precursor", "gene_name": "ccl34b.1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4IRX2-1", "protein_name": "C-C motif chemokine", "gene_name": "ccl27a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1Q6R0-1", "protein_name": "C-X-C chemokine receptor type 3", "gene_name": "cxcr3.1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4INB9-1", "protein_name": "C-X-C motif chemokine 11-1", "gene_name": "cxcl11.1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NH65-1", "protein_name": "Chemokine (C-C motif) ligand 33, duplicate 2", "gene_name": "ccl33.2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB13AAP3-1", "protein_name": "Chemokine (C motif) receptor 1a, duplicate 1", "gene_name": "xcr1a.1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB32T986-1", "protein_name": "C-C motif chemokine", "gene_name": "ccl38.6; ccl38a.3", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A5PMT9-1", "protein_name": "C-C chemokine receptor type 6a", "gene_name": "ccr6a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B0V1K7-1", "protein_name": "C-C chemokine receptor type 9a", "gene_name": "ccr9a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NW16-1", "protein_name": "Chemokine (C-C motif) ligand 33, duplicate 3 precursor", "gene_name": "ccl33.3", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A2BHJ6-1", "protein_name": "Chemokine (C-X-C motif) ligand 11, duplicate 8 precursor", "gene_name": "cxcl11.8", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QP63-1", "protein_name": "Chemokine (C-C motif) ligand 34b, duplicate 4 precursor", "gene_name": "ccl34b.4", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M2BEZ8-1", "protein_name": "Atypical chemokine receptor 3a isoform X1", "gene_name": "ackr3a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M2B9G9-1", "protein_name": "Atypical chemokine receptor 4b", "gene_name": "ackr4b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A2R8Q8Y8-1", "protein_name": "Chemokine (C-X-C motif) ligand 18a, duplicate 1 precursor", "gene_name": "cxcl18a.1", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QBE9", "url": "https://www.uniprot.org/uniprotkb/F1QBE9" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.16365434", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 17 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "CC chemokines in zebrafish: evidence for extensive intrachromosomal gene duplications.", "journal": "Genomics", "date": "2006", "authors": "Peatman Eric, Liu Zhanjiang", "reference": { "type": "PubMed", "id": "16697551", "url": "https://pubmed.ncbi.nlm.nih.gov/16697551" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QBE9-1", "protein_name": "C-C motif chemokine 25", "gene_name": "ccl25b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4IPJ5-1", "protein_name": "Chemokine (C-C motif) ligand 34b, duplicate 1 precursor", "gene_name": "ccl34b.1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4IRX2-1", "protein_name": "C-C motif chemokine", "gene_name": "ccl27a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5TYP9-1", "protein_name": "C-C motif chemokine", "gene_name": "ccl38a.4", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5TYQ0-1", "protein_name": "C-C motif chemokine", "gene_name": "ccl38a.5", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB32T986-1", "protein_name": "C-C motif chemokine", "gene_name": "ccl38.6; ccl38a.3", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NW16-1", "protein_name": "Chemokine (C-C motif) ligand 33, duplicate 3 precursor", "gene_name": "ccl33.3", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1P631-1", "protein_name": "C-C motif chemokine 19b precursor", "gene_name": "ccl19b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F6P784-1", "protein_name": "C-C motif chemokine 19a.2 precursor", "gene_name": "ccl19a.2", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QBE9", "url": "https://www.uniprot.org/uniprotkb/F1QBE9" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.16697551", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", 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"count": 0 } ], "sort_fields": [] } ] }, { "title": "hapln1 Defines an Epicardial Cell Subpopulation Required for Cardiomyocyte Expansion During Heart Morphogenesis and Regeneration.", "journal": "Circulation", "date": "2022", "authors": "Sun Jisheng, Peterson Elizabeth A, Wang Annabel Z, Ou Jianhong, Smith Kieko E, Poss Kenneth D, Wang Jinhu", "reference": { "type": "PubMed", "id": "35652354", "url": "https://pubmed.ncbi.nlm.nih.gov/35652354" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QBE9-1", "protein_name": "C-C motif chemokine 25", "gene_name": "ccl25b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0ACD6B728-1", "protein_name": "Hyaluronan synthase 1 isoform X1", "gene_name": "has1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NZY3-1", "protein_name": "Proliferation marker protein Ki-67", "gene_name": "mki67", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { 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Biol. Chem.", "date": "2013", "authors": "Mendelson Karen, Zygmunt Tomasz, Torres-V\u00e1zquez Jes\u00fas, Evans Todd, Hla Timothy", "reference": { "type": "PubMed", "id": "23229546", "url": "https://pubmed.ncbi.nlm.nih.gov/23229546" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QC10-1", "protein_name": "Sphingosine 1-phosphate receptor 4", "gene_name": "s1pr4", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NC80-1", "protein_name": "Sphingosine 1-phosphate receptor 3a", "gene_name": "s1pr3a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1Q7W7-1", "protein_name": "Sphingosine 1-phosphate receptor 5a", "gene_name": "s1pr5a", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QC10", "url": "https://www.uniprot.org/uniprotkb/F1QC10" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": 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Hirohito, Muraki Michiko, Aoki Junken, Kawahara Atsuo", "reference": { "type": "PubMed", "id": "26094551", "url": "https://pubmed.ncbi.nlm.nih.gov/26094551" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QC10-1", "protein_name": "Sphingosine 1-phosphate receptor 4", "gene_name": "s1pr4", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NC80-1", "protein_name": "Sphingosine 1-phosphate receptor 3a", "gene_name": "s1pr3a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1Q7W7-1", "protein_name": "Sphingosine 1-phosphate receptor 5a", "gene_name": "s1pr5a", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QC10", "url": "https://www.uniprot.org/uniprotkb/F1QC10" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.26094551", "abstract": "", "glycosylation": [], "mutagenesis": [], 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Chem.", "date": "2010", "authors": "Hu Yu-Lan, Pan Xin-Min, Xiang Li-Xin, Shao Jian-Zhong", "reference": { "type": "PubMed", "id": "20615881", "url": "https://pubmed.ncbi.nlm.nih.gov/20615881" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QC17-1", "protein_name": "EMILIN-1-A", "gene_name": "emilin1a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1N299-1", "protein_name": "Complement C1q subcomponent subunit C precursor", "gene_name": "c1qc", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1N540-1", "protein_name": "Complement C1q tumor necrosis factor-related protein 4", "gene_name": "c1qtnf4", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NAR4-1", "protein_name": "EMILIN-1b precursor", "gene_name": "emilin1b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0A0MPI6-1", "protein_name": "Uncharacterized protein LOC570444 precursor", "gene_name": "c1ql1", "tax_name": "Zebrafish" }, { 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Dis.", "date": "2020", "authors": "Iacomino Michele, Doliana Roberto, Marchese Maria, Capuano Alessandra, Striano Pasquale, Spessotto Paola, Bosisio Giulia, Iodice Rosa, Manganelli Fiore, Lanteri Paola, Orsini Alessandro, Baldassari Simona, Baratto Serena, Fruscione Floriana, Prada Valeria, Broda Paolo, Tessa Alessandra, Bertocci Giulia, Schenone Angelo, Colombatti Alfonso, Minetti Carlo, Santorelli Filippo Maria, Zara Federico, Fiorillo Chiara", "reference": { "type": "PubMed", "id": "31978608", "url": "https://pubmed.ncbi.nlm.nih.gov/31978608" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QC17-1", "protein_name": "EMILIN-1-A", "gene_name": "emilin1a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q9Y6C2-1", "protein_name": "EMILIN-1", "gene_name": "EMILIN1", "tax_name": "Human" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QC17", "url": "https://www.uniprot.org/uniprotkb/F1QC17" 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[] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Phenotyping Zebrafish Mutant Models to Assess Candidate Genes Associated with Aortic Aneurysm.", "journal": "Genes (Basel)", "date": "2022", "authors": "Prendergast Andrew, Ziganshin Bulat A, Papanikolaou Dimitra, Zafar Mohammad A, Nicoli Stefania, Mukherjee Sandip, Elefteriades John A", "reference": { "type": "PubMed", "id": "35052463", "url": "https://pubmed.ncbi.nlm.nih.gov/35052463" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QC17-1", "protein_name": "EMILIN-1-A", "gene_name": "emilin1a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NAR4-1", "protein_name": "EMILIN-1b precursor", "gene_name": "emilin1b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NTE7-1", "protein_name": "Collagen, type V, alpha 2a precursor", "gene_name": "col5a2a", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QC17", "url": "https://www.uniprot.org/uniprotkb/F1QC17" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.35052463", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", 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Gerontol.", "date": "2023", "authors": "Mizoguchi Takamasa, Okita Mayu, Minami Yuina, Fukunaga Misa, Maki Ayumi, Itoh Motoyuki", "reference": { "type": "PubMed", "id": "37196825", "url": "https://pubmed.ncbi.nlm.nih.gov/37196825" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QC17-1", "protein_name": "EMILIN-1-A", "gene_name": "emilin1a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0ACD6B6F6-1", "protein_name": "Platelet endothelial cell adhesion molecule", "gene_name": "pecam1a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4IPJ5-1", "protein_name": "Chemokine (C-C motif) ligand 34b, duplicate 1 precursor", "gene_name": "ccl34b.1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NAR4-1", "protein_name": "EMILIN-1b precursor", "gene_name": "emilin1b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8N1TQS2-1", "protein_name": "Elastin", "gene_name": "elna", "tax_name": "Zebrafish" }, { 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"protein_name": "Extended synaptotagmin-3", "gene_name": "esyt3", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0JJX5-1", "protein_name": "Synaptotagmin-4", "gene_name": "SYT4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "A0A8M9PPX1-1", "protein_name": "Synaptotagmin-1b isoform X1", "gene_name": "syt1b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M6Z5Z8-1", "protein_name": "Synaptotagmin-10 isoform X1", "gene_name": "syt10", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB13A9P4-1", "protein_name": "Synaptotagmin VIII isoform 1; Synaptotagmin VIII isoform X1", "gene_name": "syt8", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NEH4-1", "protein_name": "Synaptotagmin Va", "gene_name": "syt5a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B6ETT4-1", "protein_name": "Synaptotagmin-2", "gene_name": "SYT2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q93XX4-1", "protein_name": "C2 domain-containing 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A manual collection of Syt, Esyt, Rph3a, Rph3al, Doc2, and Dblc2 genes from 46 metazoan genomes--an open access resource for neuroscience and evolutionary biology.", "journal": "BMC Genomics", "date": "2010", "authors": "Craxton M", "reference": { "type": "PubMed", "id": "20078875", "url": "https://pubmed.ncbi.nlm.nih.gov/20078875" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QCC9-1", "protein_name": "Synaptotagmin Vb", "gene_name": "syt5b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QQZ8-1", "protein_name": "Synaptotagmin-11b", 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"gene_name": "syt8", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NEH4-1", "protein_name": "Synaptotagmin Va", "gene_name": "syt5a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5TZ27-1", "protein_name": "Synaptotagmin", "gene_name": "syt1a", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QCC9", "url": "https://www.uniprot.org/uniprotkb/F1QCC9" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.20078875", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 11 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], 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"sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Expression and distribution of synaptotagmin family members in the zebrafish retina.", "journal": "J. Comp. Neurol.", "date": "2022", "authors": "Henry Diane, Joselevitch Christina, Matthews Gary G, Wollmuth Lonnie P", "reference": { "type": "PubMed", "id": "34468021", "url": "https://pubmed.ncbi.nlm.nih.gov/34468021" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QCC9-1", "protein_name": "Synaptotagmin Vb", "gene_name": "syt5b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M9PPX1-1", "protein_name": "Synaptotagmin-1b isoform X1", "gene_name": "syt1b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M6Z5Z8-1", "protein_name": "Synaptotagmin-10 isoform X1", "gene_name": "syt10", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB13A9P4-1", "protein_name": "Synaptotagmin VIII isoform 1; Synaptotagmin VIII isoform X1", "gene_name": "syt8", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NEH4-1", "protein_name": "Synaptotagmin Va", "gene_name": "syt5a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5TZ27-1", 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"count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Conserved expression of the zebrafish syt4 gene in GABAergic neurons in the cerebellum of adult fishes revealed by mammalian SYT4 immunoreactive-like signals.", "journal": "Heliyon", "date": "2024", "authors": "Shiao Meng-Shin, Liu Sian-Tai, Siriwatcharapibool Ganchai, Thongpradit Supranee, Khunpanich Punnakorn, Tong Sok-Keng, Huang Chih-Hsuan, Jinawath Natini, Chou Ming-Yi", "reference": { "type": "PubMed", "id": "38765140", "url": "https://pubmed.ncbi.nlm.nih.gov/38765140" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QCC9-1", "protein_name": "Synaptotagmin Vb", "gene_name": "syt5b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QQZ8-1", "protein_name": "Synaptotagmin-11b", "gene_name": "syt11b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1RD06-1", "protein_name": "Synaptotagmin-11a", 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proteins in zebra fish and their involvement in notochord development.", "journal": "Mol. Cell. Biol.", "date": "2004", "authors": "Correa Ricardo G, Tergaonkar Vinay, Ng Jennifer K, Dubova Ilir, Izpisua-Belmonte Juan Carlos, Verma Inder M", "reference": { "type": "PubMed", "id": "15169890", "url": "https://pubmed.ncbi.nlm.nih.gov/15169890" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QCG4-1", "protein_name": "NF-kappa-B inhibitor alpha", "gene_name": "nfkbiaa", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QCG4", "url": "https://www.uniprot.org/uniprotkb/F1QCG4" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.15169890", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Zebrafish IkappaB kinase 1 negatively regulates NF-kappaB activity.", "journal": "Curr. Biol.", "date": "2005", "authors": "Correa Ricardo G, Matsui Takaaki, Tergaonkar Vinay, Rodriguez-Esteban Concepcion, Izpisua-Belmonte Juan Carlos, Verma Inder M", "reference": { "type": "PubMed", "id": "16051172", "url": "https://pubmed.ncbi.nlm.nih.gov/16051172" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QCG4-1", "protein_name": "NF-kappa-B inhibitor alpha", "gene_name": "nfkbiaa", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q4G3H4-1", "protein_name": "Inhibitor of nuclear factor kappa-B kinase subunit alpha", "gene_name": "chuk", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1PF76-1", "protein_name": "Interferon phi 1 precursor", "gene_name": "ifnphi1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58GJC9-1", "protein_name": "Interleukin-1", "gene_name": "il1b", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QCG4", "url": "https://www.uniprot.org/uniprotkb/F1QCG4" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.16051172", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Identification of the zebrafish IFN receptor: implications for the origin of the vertebrate IFN system.", "journal": "J. Immunol.", "date": "2007", "authors": "Levraud Jean-Pierre, Boudinot Pierre, Colin Ingrid, Benmansour Abdenour, Peyrieras Nadine, Herbomel Philippe, Lutfalla Georges", "reference": { "type": "PubMed", "id": "17371995", "url": "https://pubmed.ncbi.nlm.nih.gov/17371995" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QCG4-1", "protein_name": "NF-kappa-B inhibitor alpha", "gene_name": "nfkbiaa", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QFQ7-1", "protein_name": "Short/branched chain specific acyl-CoA dehydrogenase, mitochondrial", "gene_name": "acadsb", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5RH95-1", "protein_name": "S-adenosylmethionine-dependent nucleotide dehydratase RSAD2", "gene_name": "rsad2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4INB9-1", "protein_name": "C-X-C motif chemokine 11-1", "gene_name": "cxcl11.1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NC30-1", "protein_name": "Interferon gamma receptor 2 precursor", "gene_name": "ifngr2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A8DZH1-1", "protein_name": "FXYD domain-containing ion transport regulator", "gene_name": "fxyd3", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1Q4N4-1", "protein_name": "NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial", "gene_name": "ndufs2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1RBF1-1", "protein_name": "Interleukin-20 receptor subunit alpha precursor", "gene_name": "il20ra", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M2BFF0-1", "protein_name": "Cytokine receptor family member b2 isoform X1", "gene_name": "crfb2", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QCG4", "url": "https://www.uniprot.org/uniprotkb/F1QCG4" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.17371995", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 9 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The role of gamma interferon in innate immunity in the zebrafish embryo.", "journal": "Dis. Model. Mech.", "date": "2009", "authors": "Sieger Dirk, Stein Cornelia, Neifer David, van der Sar Astrid M, Leptin Maria", "reference": { "type": "PubMed", "id": "19779068", "url": "https://pubmed.ncbi.nlm.nih.gov/19779068" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QCG4-1", "protein_name": "NF-kappa-B inhibitor alpha", "gene_name": "nfkbiaa", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q1MT80-1", "protein_name": "Guanylate-binding protein 4", "gene_name": "gbp4", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1P8J0-1", "protein_name": "3.5.4.37; Double-stranded RNA-specific adenosine deaminase", "gene_name": "adar", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5TLE6-1", "protein_name": "Interferon gamma related precursor", "gene_name": "ifng1r", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1P8B8-1", "protein_name": "Immunity-related GTPase family, f1", "gene_name": "irgf1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58H021-1", "protein_name": "Uncharacterized protein isoform X2", "gene_name": "gbp3", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QCG4", "url": "https://www.uniprot.org/uniprotkb/F1QCG4" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.19779068", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Evolution of two-pore domain potassium channels and their gene expression in zebrafish embryos.", "journal": "Dev. Dyn.", "date": "2024", "authors": "Park Sung Jun, Silic Martin R, Staab Peyton L, Chen Jiapei, Zackschewski Ethan L, Zhang GuangJun", "reference": { "type": "PubMed", "id": "38270285", "url": "https://pubmed.ncbi.nlm.nih.gov/38270285" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QCG4-1", "protein_name": "NF-kappa-B inhibitor alpha", "gene_name": "nfkbiaa", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M9PED3-1", "protein_name": "Forkhead box protein N3", "gene_name": "foxn3", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5VSC8-1", "protein_name": "Phospholipase DDHD1b", "gene_name": "ddhd1b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q7ZZB1-1", "protein_name": "Sorting nexin", "gene_name": "snx9a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M2BBN5-1", "protein_name": "Dermatan-sulfate epimerase isoform X1", "gene_name": "dse", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B8A573-1", 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"protein_name": "Gamma-sarcoglycan", "gene_name": "sgcg", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QM54-1", "protein_name": "Ras homolog family member Ub", "gene_name": "rhoub", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1R143-1", "protein_name": "Zinc finger protein 395a isoform X1", "gene_name": "znf395a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5TZ59-1", "protein_name": "Potassium channel subfamily K member", "gene_name": "kcnk3a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q8JFD6-1", "protein_name": "Gap junction protein", "gene_name": "gjd2b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M2B5P2-1", "protein_name": "Intron Large complex component GCFC2 isoform X1", "gene_name": "gcfc2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NZ47-1", "protein_name": "Direct IAP-binding protein with low pI", "gene_name": "diablob", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8N1Z489-1", 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Biophys. Acta Mol. 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Technol.", "date": "2024", "authors": "Liu Yueyue, Lin Siyi, Wang Chen, Li Tong, Zheng Guomao, Sun Wen, An Lihui, Bai Yingchen, Wu Fengchang", "reference": { "type": "PubMed", "id": "39141879", "url": "https://pubmed.ncbi.nlm.nih.gov/39141879" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QCG4-1", "protein_name": "NF-kappa-B inhibitor alpha", "gene_name": "nfkbiaa", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58H6L3-1", "protein_name": "Caspase-3", "gene_name": "casp3b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1P2J9-1", "protein_name": "CASP8 and FADD-like apoptosis regulator a", "gene_name": "cflara", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NIE6-1", "protein_name": "IkappaB kinase", "gene_name": "ikbkb", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QCG4", "url": "https://www.uniprot.org/uniprotkb/F1QCG4" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.39141879", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Glucocorticoids Suppress NF-kappaB-Mediated Neutrophil Control of Aspergillus fumigatus Hyphal Growth.", "journal": "J. Immunol.", "date": "2024", "authors": "Rosowski E.E., Anderson M.H., Thrikawala S.U.", "reference": { "type": "PubMed", "id": "39178124", "url": "https://pubmed.ncbi.nlm.nih.gov/39178124" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QCG4-1", "protein_name": "NF-kappa-B inhibitor alpha", "gene_name": "nfkbiaa", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q8AW41-1", "protein_name": "Transcription factor PU.1b isoform 3", "gene_name": "spi1b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7F8R4-1", "protein_name": "Arginase", "gene_name": "arg1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1PI90-1", "protein_name": "Microfibril-associated glycoprotein 4 isoform X1; Microfibril-associated glycoprotein 4 precursor", "gene_name": "mfap4.1", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QCG4", "url": "https://www.uniprot.org/uniprotkb/F1QCG4" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.39178124", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "p65 signaling dynamics drive the developmental progression of hematopoietic stem and progenitor cells through cell cycle regulation.", "journal": "Nat. Commun.", "date": "2024", "authors": "Campbell Clyde A, Calderon Rodolfo, Pavani Giulia, Cheng Xiaoyi, Barakat Radwa, Snella Elizabeth, Liu Fang, Peng Xiyu, Essner Jeffrey J, Dorman Karin S, McGrail Maura, Gadue Paul, French Deborah L, Espin-Palazon Raquel", "reference": { "type": "PubMed", "id": "39242546", "url": "https://pubmed.ncbi.nlm.nih.gov/39242546" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QCG4-1", "protein_name": "NF-kappa-B inhibitor alpha", "gene_name": "nfkbiaa", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QP24-1", "protein_name": "Transcriptional activator Myb", "gene_name": "myb", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q6P698-1", "protein_name": "Plastin-2", "gene_name": "lcp1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B8A6D9-1", "protein_name": "Cyclin-dependent kinase inhibitor 3", "gene_name": "cdkn3", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q1LW01-1", "protein_name": 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ONE", "date": "2013", "authors": "O'Quin Kelly E, Yoshizawa Masato, Doshi Pooja, Jeffery William R", "reference": { "type": "PubMed", "id": "23437360", "url": "https://pubmed.ncbi.nlm.nih.gov/23437360" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QCR7-1", "protein_name": "Neurofilament, medium polypeptide a", "gene_name": "nefma", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E9QBI8-1", "protein_name": "LIM/homeobox protein Lhx9", "gene_name": "lhx2a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q6DHR3-1", "protein_name": "Ras-GEF domain-containing family member 1B-A", "gene_name": "rasgef1ba", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QCR7", "url": "https://www.uniprot.org/uniprotkb/F1QCR7" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.23437360", "abstract": 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"uniprot_canonical_ac": "F1QJR8-1", "protein_name": "SAP30-binding protein", "gene_name": "sap30bp", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QME9-1", "protein_name": "Forkhead box protein K2", "gene_name": "foxk2a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F6P8Y5-1", "protein_name": "Mitotic deacetylase associated SANT domain protein a isoform X1", "gene_name": "mideasa", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1R143-1", "protein_name": "Zinc finger protein 395a isoform X1", "gene_name": "znf395a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F8W5L7-1", "protein_name": "Grainyhead-like transcription factor 2a", "gene_name": "grhl2a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q6PCR6-1", "protein_name": "Zinc finger RNA-binding protein", "gene_name": "zfr", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B0R061-1", "protein_name": "SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1A", "gene_name": "smarcad1a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7F1C4-1", "protein_name": "SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1B", "gene_name": "smarcad1b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B8A4F0-1", "protein_name": "Palmitoyltransferase ZDHHC16A", "gene_name": "zdhhc16a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB32TYQ7-1", "protein_name": "Nuclear receptor subfamily 2 group C member 2 isoform X2", "gene_name": "nr2c2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q6DGN6-1", "protein_name": "Protein SPT2 homolog", "gene_name": "spty2d1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q7SYB3-1", "protein_name": "RING1 and YY1-binding protein A", "gene_name": "rybpa", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5RH27-1", "protein_name": "Transcription initiation factor TFIID subunit 3", "gene_name": "taf3", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M3AK78-1", "protein_name": "Mothers against decapentaplegic homolog", "gene_name": "smad10a; smad10b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M2BE79-1", "protein_name": "PHD finger protein 19 isoform X1", "gene_name": "phf19", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M2BIF1-1", "protein_name": "BCL6A transcription repressor b isoform X1", "gene_name": "bcl6ab", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB13A7B7-1", "protein_name": "Protein CBFA2T2", "gene_name": "cbfa2t2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58GCU3-1", "protein_name": "Krueppel-like factor 12b isoform X1", "gene_name": "klf12b", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QCR7", "url": "https://www.uniprot.org/uniprotkb/F1QCR7" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.25556858", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 85 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { 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Comp. Neurol.", "date": "2016", "authors": "Liao Meng-Lin, Peng Wei-Hau, Kan Daphne, Chien Chung-Liang", "reference": { "type": "PubMed", "id": "27159642", "url": "https://pubmed.ncbi.nlm.nih.gov/27159642" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QCR7-1", "protein_name": "Neurofilament, medium polypeptide a", "gene_name": "nefma", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A2ATX5-1", "protein_name": "Internexin neuronal intermediate filament protein, alpha a", "gene_name": "inaa", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QCR7", "url": "https://www.uniprot.org/uniprotkb/F1QCR7" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.27159642", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Neuronal activity disrupts myelinated axon integrity in the absence of NKCC1b.", "journal": "J. Cell Biol.", "date": "2020", "authors": "Marshall-Phelps Katy L H, Kegel Linde, Baraban Marion, Ruhwedel Torben, Almeida Rafael G, Rubio-Brotons Maria, Klingseisen Anna, Benito-Kwiecinski Silvia K, Early Jason J, Bin Jenea M, Suminaite Daumante, Livesey Matthew R, M\u00f6bius Wiebke, Poole Richard J, Lyons David A", "reference": { "type": "PubMed", "id": "32364583", "url": "https://pubmed.ncbi.nlm.nih.gov/32364583" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QCR7-1", "protein_name": "Neurofilament, medium polypeptide a", "gene_name": "nefma", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QCR7", "url": "https://www.uniprot.org/uniprotkb/F1QCR7" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.32364583", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], 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Biochem. Physiol. B, Biochem. Mol. Biol.", "date": "2010", "authors": "Rosemberg Denis Broock, Rico Eduardo Pacheco, Langoni Andrei Silveira, Spinelli Jonathan Tesch, Pereira Talita Carneiro, Dias Renato Dutra, Souza Diogo Onofre, Bonan Carla Denise, Bogo Maur\u00edcio Reis", "reference": { "type": "PubMed", "id": "19922813", "url": "https://pubmed.ncbi.nlm.nih.gov/19922813" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QCU4-1", "protein_name": "Ectonucleoside triphosphate diphosphohydrolase 8", "gene_name": "entpd8", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QCU4", "url": "https://www.uniprot.org/uniprotkb/F1QCU4" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.19922813", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Arginine exposure alters ectonucleotidase activities and morphology of zebrafish larvae (Danio rerio).", "journal": "Int. J. Dev. Neurosci.", "date": "2013", "authors": "Capiotti Katiucia Marques, Fazenda Lidiane, Nazario Luiza Reali, Menezes Fabiano Peres, Kist Luiza Wilges, Bogo Maur\u00edcio Reis, Da Silva Rosane Souza, Wyse Angela Terezinha, Bonan Carla Denise", "reference": { "type": "PubMed", "id": "22995533", "url": "https://pubmed.ncbi.nlm.nih.gov/22995533" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QCU4-1", "protein_name": "Ectonucleoside triphosphate diphosphohydrolase 8", "gene_name": "entpd8", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QCU4", "url": "https://www.uniprot.org/uniprotkb/F1QCU4" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.22995533", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Drug screening in Scn1a zebrafish mutant identifies clemizole as a potential Dravet syndrome treatment.", "journal": "Nat. Commun.", "date": "2013", "authors": "Baraban Scott C, Dinday Matthew T, Hortopan Gabriela A", "reference": { "type": "PubMed", "id": "24002024", "url": "https://pubmed.ncbi.nlm.nih.gov/24002024" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QCU4-1", "protein_name": "Ectonucleoside triphosphate diphosphohydrolase 8", "gene_name": "entpd8", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QU76-1", "protein_name": "Cholesterol 7-alpha-monooxygenase", "gene_name": "cyp7a1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QXF4-1", "protein_name": "THO complex subunit 2", "gene_name": "thoc2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A1L1R0-1", "protein_name": "Protein SHQ1 homolog", "gene_name": "shq1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M6Z3P0-1", "protein_name": "Ubiquitin-associated protein 2a isoform X1", "gene_name": "ubap2a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B0V234-1", 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Cell Biol.", "date": "2014", "authors": "Gault William J, Enyedi Bal\u00e1zs, Niethammer Philipp", "reference": { "type": "PubMed", "id": "25533845", "url": "https://pubmed.ncbi.nlm.nih.gov/25533845" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QCU4-1", "protein_name": "Ectonucleoside triphosphate diphosphohydrolase 8", "gene_name": "entpd8", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QCU4", "url": "https://www.uniprot.org/uniprotkb/F1QCU4" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.25533845", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", 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Sci. Technol.", "date": "2005", "authors": "Gonzalez P, Dominique Y, Massabuau J C, Boudou A, Bourdineaud J P", "reference": { "type": "PubMed", "id": "15984772", "url": "https://pubmed.ncbi.nlm.nih.gov/15984772" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QDF0-1", "protein_name": "Kinesin-like protein", "gene_name": "kif20a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QYZ6-1", "protein_name": "Pyruvate carboxylase", "gene_name": "pcxb", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58I2J2-1", "protein_name": "DNA repair protein RAD51 homolog", "gene_name": "rad51", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QDF0", "url": "https://www.uniprot.org/uniprotkb/F1QDF0" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.15984772", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Metallothionein gene expression in zebrafish embryo-larvae and ZFL cell-line exposed to heavy metal ions.", "journal": "Mar. Environ. Res. 62", "date": "2006", "authors": "Chan King Ming, Ku Lily L, Chan Patrick C-Y, Cheuk Wai Ka", "reference": { "type": "PubMed", "id": "16690118", "url": "https://pubmed.ncbi.nlm.nih.gov/16690118" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QDF0-1", "protein_name": "Kinesin-like protein", "gene_name": "kif20a", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QDF0", "url": "https://www.uniprot.org/uniprotkb/F1QDF0" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.16690118", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": 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], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Regulation of ZIP and ZnT zinc transporters in zebrafish gill: zinc repression of ZIP10 transcription by an intronic MRE cluster.", "journal": "Physiol. Genomics", "date": "2008", "authors": "Zheng Dongling, Feeney Graham P, Kille Peter, Hogstrand Christer", "reference": { "type": "PubMed", "id": "18477665", "url": "https://pubmed.ncbi.nlm.nih.gov/18477665" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QDF0-1", "protein_name": "Kinesin-like protein", "gene_name": "kif20a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QFA1-1", "protein_name": "Probable proton-coupled zinc antiporter SLC30A3", "gene_name": "slc30a2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q6PEH9-1", "protein_name": "Zinc transporter ZIP10", "gene_name": "slc39a10", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58HHL9-1", "protein_name": "Zinc transporter ZIP3 isoform X1", "gene_name": "slc39a3", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QDF0", "url": "https://www.uniprot.org/uniprotkb/F1QDF0" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.18477665", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Dietary iron alters waterborne copper-induced gene expression in soft water acclimated zebrafish (Danio rerio).", "journal": "Am. J. Physiol. Regul. Integr. Comp. Physiol.", "date": "2009", "authors": "Craig Paul M, Galus Michal, Wood Chris M, McClelland Grant B", "reference": { "type": "PubMed", "id": "18987288", "url": "https://pubmed.ncbi.nlm.nih.gov/18987288" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QDF0-1", "protein_name": "Kinesin-like protein", "gene_name": "kif20a", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QDF0", "url": "https://www.uniprot.org/uniprotkb/F1QDF0" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.18987288", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { 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"glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Compound heterozygous loss-of-function mutations in KIF20A are associated with a novel lethal congenital cardiomyopathy in two siblings.", "journal": "PLoS Genet.", "date": "2018", "authors": "Louw JJ, Nunes Bastos R, Chen X, Verdood C, Corveleyn A, Jia Y, Breckpot J, Gewillig M, Peeters H, Santoro MM, Barr F, Devriendt K", "reference": { "type": "PubMed", "id": "29357359", "url": "https://pubmed.ncbi.nlm.nih.gov/29357359" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QDF0-1", "protein_name": "Kinesin-like 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"count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Newly identified Gon4l/Udu-interacting proteins implicate novel functions.", "journal": "Sci. Rep.", "date": "2020", "authors": "Tsai SM, Chu KC, Jiang YJ", "reference": { "type": "PubMed", "id": "32848183", "url": "https://pubmed.ncbi.nlm.nih.gov/32848183" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QDF0-1", "protein_name": "Kinesin-like protein", "gene_name": "kif20a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A8DZD4-1", "protein_name": "Bcl-2/adenovirus E1B 19 kDa-interacting protein 2-like protein", "gene_name": "bnipl", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A1L2G3-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase BAP1", "gene_name": "bap1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QI87-1", "protein_name": "GON-4-like protein", "gene_name": "gon4lb", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QDF0", "url": "https://www.uniprot.org/uniprotkb/F1QDF0" } ], "common_name": "Zebrafish", "glygen_name": 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Jonghwan, Yang Zhongan, Jurynec Michael J, Akie Thomas E, Lee Joseph, LeBlanc Jocelyn, Sessa Anna, Jiang Hong, DiBiase Anthony, Zhou Yi, Grunwald David J, Lin Shuo, Cantor Alan B, Orkin Stuart H, Zon Leonard I", "reference": { "type": "PubMed", "id": "20603019", "url": "https://pubmed.ncbi.nlm.nih.gov/20603019" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QEB4-1", "protein_name": "FACT complex subunit SSRP1", "gene_name": "ssrp1a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "X1WHN7-1", "protein_name": "Parafibromin", "gene_name": "cdc73", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QIB2-1", "protein_name": "Cleavage stimulation factor subunit 3", "gene_name": "cstf3", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QEB4", "url": "https://www.uniprot.org/uniprotkb/F1QEB4" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.20603019", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { 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"field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Ssrp1a controls organogenesis by promoting cell cycle progression and RNA synthesis.", "journal": "Development", "date": "2013", "authors": "Koltowska Katarzyna, Apitz Holger, Stamataki Despina, Hirst Elizabeth M A, Verkade Heather, Salecker Iris, Ober Elke A", "reference": { "type": "PubMed", "id": "23515471", "url": "https://pubmed.ncbi.nlm.nih.gov/23515471" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QEB4-1", "protein_name": "FACT complex subunit SSRP1", "gene_name": "ssrp1a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F2Z4V7-1", "protein_name": "Solute carrier family 43 member 1a", "gene_name": "slc43a1a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4ITN2-1", "protein_name": "Vitamin D-binding protein", "gene_name": "gc", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F2Z4U5-1", "protein_name": "Cell cycle checkpoint control protein", "gene_name": "rad9a", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QEB4", "url": "https://www.uniprot.org/uniprotkb/F1QEB4" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.23515471", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": 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"glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Proteome dynamics in neutrophils of adult zebrafish upon chemically-induced inflammation.", "journal": "Fish Shellfish Immunol.", "date": "2014", "authors": "Singh Sachin Kumar, Aravamudhan Sriram, Armant Olivier, Kr\u00fcger Marcus, Grabher Clemens", "reference": { "type": "PubMed", "id": "25014315", "url": "https://pubmed.ncbi.nlm.nih.gov/25014315" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QEB4-1", "protein_name": "FACT complex subunit SSRP1", "gene_name": "ssrp1a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QFQ7-1", "protein_name": "Short/branched chain specific acyl-CoA dehydrogenase, mitochondrial", "gene_name": "acadsb", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A9C3T0-1", "protein_name": "cAMP-dependent protein kinase type II-alpha regulatory subunit", "gene_name": "prkar2aa", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A2R8QGC0-1", "protein_name": "Ubiquitin-like modifier-activating enzyme 5", "gene_name": "uba5", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1N3S3-1", "protein_name": "NADP-retinol dehydrogenase", "gene_name": "rdh12l", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QWR0-1", "protein_name": "Protein NipSnap homolog 3A", "gene_name": "nipsnap3a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58JIA3-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein K", "gene_name": "hnrpkl", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A5PMZ3-1", "protein_name": "Macrophage-capping protein", "gene_name": "scinlb", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M3AQP1-1", "protein_name": "LIM domain-containing protein 2 isoform X1", "gene_name": "limd2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1R9A9-1", "protein_name": "Leukocyte elastase inhibitor", "gene_name": "serpinb1l1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1RBH2-1", "protein_name": "ADP-ribosylation factor-like 8Bb", "gene_name": "arl8bb", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QIB3-1", "protein_name": "Drebrin-like b isoform X1", "gene_name": "dbnlb", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QEB4", "url": "https://www.uniprot.org/uniprotkb/F1QEB4" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.25014315", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 12 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Characterization of the Apelin/Elabela Receptors (APLNR) in Chickens, Turtles, and Zebrafish: Identification of a Novel Apelin-Specific Receptor in Teleosts.", "journal": "Front. Endocrinol.", "date": "2018", "authors": "Zhang Jiannan, Zhou Yawei, Wu Chenlei, Wan Yiping, Fang Chao, Li Jing, Fang Wenqian, Yi Ran, Zhu Guoqiang, Li Juan, Wang Yajun", "reference": { "type": "PubMed", "id": "30631305", "url": "https://pubmed.ncbi.nlm.nih.gov/30631305" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QEB4-1", "protein_name": "FACT complex subunit SSRP1", "gene_name": "ssrp1a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7EY42-1", "protein_name": "Phosphatidylserine synthase 2", "gene_name": "ptdss2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A1D5NSS3-1", "protein_name": "PHD finger protein 21Aa isoform X1", "gene_name": "phf21aa", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0B4J1A5-1", "protein_name": "EWS RNA-binding protein 1a", "gene_name": "ewsr1a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M9PCJ8-1", "protein_name": "P2X purinoceptor", "gene_name": "p2rx3b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB32U022-1", "protein_name": "Lysine (K)-specific demethylase 2Ba isoform X1", "gene_name": "kdm2ba", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7F2M5-1", "protein_name": "MAC-inhibitory protein", "gene_name": "cd59a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M2B724-1", "protein_name": "[histone H3]-dimethyl-L-lysine(36) demethylase", "gene_name": "kdm2aa", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1N540-1", "protein_name": "Complement C1q tumor necrosis factor-related protein 4", "gene_name": "c1qtnf4", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1R287-1", "protein_name": "F-box only protein 3", "gene_name": "fbxo3", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB13A9J0-1", "protein_name": "Plexin-B2b isoform 1 precursor", "gene_name": "plxnb2b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58H6R0-1", "protein_name": "P2X purinoceptor", "gene_name": "p2rx3a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1N6K3-1", "protein_name": "HMG box-containing protein 1", "gene_name": "hbp1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1N6N6-1", "protein_name": "NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial", "gene_name": "ndufs8b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q7ZW46-1", "protein_name": "UDP-xylose and UDP-N-acetylglucosamine transporter", "gene_name": "slc35b4", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QEB4", "url": "https://www.uniprot.org/uniprotkb/F1QEB4" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.30631305", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 15 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A combined FSTRA-shotgun proteomics approach to identify molecular changes in zebrafish upon chemical exposure.", "journal": "Sci. Rep.", "date": "2019", "authors": "Ayobahan Steve U, Eilebrecht Elke, Kotthoff Matthias, Baumann Lisa, Eilebrecht Sebastian, Teigeler Matthias, Hollert Henner, Kalkhof Stefan, Sch\u00e4fers Christoph", "reference": { "type": "PubMed", "id": "31036921", "url": "https://pubmed.ncbi.nlm.nih.gov/31036921" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QEB4-1", "protein_name": "FACT complex subunit SSRP1", "gene_name": "ssrp1a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QPF7-1", "protein_name": "Cystathionine gamma-lyase", "gene_name": "cth", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1N0E2-1", "protein_name": "2,4-dienoyl-CoA reductase [(3E)-enoyl-CoA-producing], mitochondrial", "gene_name": "decr1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1PLH2-1", "protein_name": "Zona pellucida protein AX 1 precursor", "gene_name": "zpax1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB13A3S9-1", "protein_name": "Protein ERGIC-53 precursor", "gene_name": "lman1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB13A3X0-1", "protein_name": "Cytochrome c oxidase subunit 5B, mitochondrial", "gene_name": "cox5bb", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1P526-1", "protein_name": "ATP synthase subunit gamma", "gene_name": "atp5f1c", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5TYP5-1", "protein_name": "Zona pellucida sperm-binding protein 3", "gene_name": "zp3a.1", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QEB4", "url": "https://www.uniprot.org/uniprotkb/F1QEB4" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.31036921", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 8 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Haematopoietic stem cell-dependent Notch transcription is mediated by p53 through the Histone chaperone Supt16h.", "journal": "Nat. Cell Biol.", "date": "2020", "authors": "Espanola Sophia G, Song Hyemin, Ryu Eunjin, Saxena Aditya, Kim Eun-Sun, Manegold Jennifer E, Nasamran Chanond A, Sahoo Debashis, Oh Chang-Kyu, Bickers Cara, Shin Unbeom, Grainger Stephanie, Park Yong Hwan, Pandolfo Lauren, Kang Mi-Sun, Kang Sukhyun, Myung Kyungjae, Cooper Kimberly L, Yelon Deborah, Traver David, Lee Yoonsung", "reference": { "type": "PubMed", "id": "33230303", "url": "https://pubmed.ncbi.nlm.nih.gov/33230303" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QEB4-1", "protein_name": "FACT complex subunit SSRP1", "gene_name": "ssrp1a", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QEB4", "url": "https://www.uniprot.org/uniprotkb/F1QEB4" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.33230303", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] } ]