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J.", "date": "1982", "authors": "Kerr M A, Gagnon J", "reference": { "type": "PubMed", "id": "6922702", "url": "https://pubmed.ncbi.nlm.nih.gov/6922702" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P06681-1", "protein_name": "Complement C2", "gene_name": "C2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P06681", "url": "https://www.uniprot.org/uniprotkb/P06681" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.6922702", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Structure of the human C2 gene.", "journal": "J. 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Allele-specific amino acid substitutions (Ser189 --> Phe; Gly444 --> Arg) cause impaired C2 secretion.", "journal": "The Journal of biological chemistry", "date": "1996", "authors": "Wetsel RA, Kulics J, Lokki ML, Kiepiela P, Akama H, Johnson CA, Densen P, Colten HR", "reference": { "type": "PubMed", "id": "8621452", "url": "https://pubmed.ncbi.nlm.nih.gov/8621452" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P06681-1", "protein_name": "Complement C2", "gene_name": "C2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P06681", "url": "https://www.uniprot.org/uniprotkb/P06681" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.8621452", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Inhibition of complement activity by humanized anti-C5 antibody and single-chain Fv.", "journal": "Molecular immunology", "date": "1996", "authors": "Thomas TC, Rollins SA, Rother RP, Giannoni MA, Hartman SL, Elliott EA, Nye SH, Matis LA, Squinto SP, Evans MJ", "reference": { "type": "PubMed", "id": "9171898", "url": "https://pubmed.ncbi.nlm.nih.gov/9171898" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P06681-1", "protein_name": "Complement C2", "gene_name": "C2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0C0L5-1", "protein_name": "Complement C4-B", "gene_name": "C4B_2; 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Biol.", "date": "2002", "authors": "Cazalla Demian, Zhu Jun, Manche Lisa, Huber Elisabeth, Krainer Adrian R, C\u00e1ceres Javier F", "reference": { "type": "PubMed", "id": "12215544", "url": "https://pubmed.ncbi.nlm.nih.gov/12215544" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q07955-1", "protein_name": "Serine/arginine-rich splicing factor 1", "gene_name": "SRSF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q07955", "url": "https://www.uniprot.org/uniprotkb/Q07955" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.12215544", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", 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"count": 0 } ], "sort_fields": [] } ] }, { "title": "Arginine methylation controls the subcellular localization and functions of the oncoprotein splicing factor SF2/ASF.", "journal": "Molecular and cellular biology", "date": "2010", "authors": "Sinha R, Allemand E, Zhang Z, Karni R, Myers MP, Krainer AR", "reference": { "type": "PubMed", "id": "20308322", "url": "https://pubmed.ncbi.nlm.nih.gov/20308322" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q07955-1", "protein_name": "Serine/arginine-rich splicing factor 1", "gene_name": "SRSF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q07955", "url": "https://www.uniprot.org/uniprotkb/Q07955" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 109, "end_pos": 109, "sequence_org": "R", "sequence_mut": "A", "comment": "Predominantly localizes to 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"o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Nuclear ARVCF protein binds splicing factors and contributes to the regulation of alternative splicing.", "journal": "J. 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Chem.", "date": "2014", "authors": "Rappe U, Schlechter T, Aschoff M, Hotz-Wagenblatt A, Hofmann I", "reference": { "type": "PubMed", "id": "24644279", "url": "https://pubmed.ncbi.nlm.nih.gov/24644279" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q07955-1", "protein_name": "Serine/arginine-rich splicing factor 1", "gene_name": "SRSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00192-1", "protein_name": "Splicing regulator ARVCF", "gene_name": "ARVCF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17844-1", "protein_name": "Probable ATP-dependent RNA helicase DDX5", "gene_name": "DDX5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55795-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein H2", "gene_name": "HNRNPH2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q07955", "url": "https://www.uniprot.org/uniprotkb/Q07955" } ], "common_name": 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acute lymphoblastic leukemia.", "journal": "Cancer science", "date": "2018", "authors": "Xu L, Zhang H, Mei M, Du C, Huang X, Li J, Wang Y, Bao S, Zheng H", "reference": { "type": "PubMed", "id": "30320932", "url": "https://pubmed.ncbi.nlm.nih.gov/30320932" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q07955-1", "protein_name": "Serine/arginine-rich splicing factor 1", "gene_name": "SRSF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q07955", "url": "https://www.uniprot.org/uniprotkb/Q07955" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 19, "end_pos": 19, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q07955", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q07955" }, { 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"count": 0 } ], "sort_fields": [] } ] }, { "title": "AMP-activated protein kinase regulates alternative pre-mRNA splicing by phosphorylation of SRSF1.", "journal": "The Biochemical journal", "date": "2020-06-26", "authors": "Matsumoto Eri, Akiyama Kaho, Saito Takuya, Matsumoto Yu, Kobayashi Ken-Ichi, Inoue Jun, Yamamoto Yuji, Suzuki Tsukasa", "reference": { "type": "PubMed", "id": "32453427", "url": "https://pubmed.ncbi.nlm.nih.gov/32453427" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q07955-1", "protein_name": "Serine/arginine-rich splicing factor 1", "gene_name": "SRSF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q07955", "url": "https://www.uniprot.org/uniprotkb/Q07955" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 133, "end_pos": 133, "kinase_uniprot_canonical_ac": "", 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El It Fatima, Marle Nathalie, Callier Patrick, Relator Raissa, Haghshenas Sadegheh, McConkey Haley, Kerkhof Jennifer, Cesario Claudia, Novelli Antonio, Brunetti-Pierri Nicola, Pinelli Michele, Pennamen Perrine, Naudion Sophie, Legendre Marine, Courdier C\u00e9cile, Trimouille Aurelien, Fenzy Martine Doco, Pais Lynn, Yeung Alison, Nugent Kimberly, Roeder Elizabeth R, Mitani Tadahiro, Posey Jennifer E, Calame Daniel, Yonath Hagith, Rosenfeld Jill A, Musante Luciana, Faletra Flavio, Montanari Francesca, Sartor Giovanna, Vancini Alessandra, Seri Marco, Besmond Claude, Poirier Karine, Hubert Laurence, Hemelsoet Dimitri, Munnich Arnold, Lupski James R, Philippe Christophe, Thauvin-Robinet Christel, Faivre Laurence, Sadikovic Bekim, Govin J\u00e9r\u00f4me, Dermaut Bart, Vitobello Antonio", "reference": { "type": "PubMed", "id": "37071997", "url": "https://pubmed.ncbi.nlm.nih.gov/37071997" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q07955-1", 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"glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "PAR3-aPKC regulates Tiam1 by modulating suppressive internal interactions.", "journal": "Molecular biology of the cell", "date": "2016", "authors": "Matsuzawa K, Akita H, Watanabe T, Kakeno M, Matsui T, Wang S, Kaibuchi K", "reference": { "type": "PubMed", "id": "26941335", "url": "https://pubmed.ncbi.nlm.nih.gov/26941335" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13009-1", "protein_name": "Rho guanine nucleotide exchange factor TIAM1", "gene_name": "TIAM1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13009", "url": "https://www.uniprot.org/uniprotkb/Q13009" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 29, "end_pos": 29, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q13009", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q13009" }, { "database": "PubMed", "id": "26941335", "url": 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Biol. Chem.", "date": "2001", "authors": "Stipp C S, Kolesnikova T V, Hemler M E", "reference": { "type": "PubMed", "id": "11504738", "url": "https://pubmed.ncbi.nlm.nih.gov/11504738" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P21926-1", "protein_name": "CD9 antigen", "gene_name": "CD9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93033-1", "protein_name": "Immunoglobulin superfamily member 2", "gene_name": "CD101", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60033-1", "protein_name": "CD81 antigen", "gene_name": "CD81", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75054-1", "protein_name": "Immunoglobulin superfamily member 3", "gene_name": "IGSF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969P0-1", "protein_name": "Immunoglobulin superfamily member 8", "gene_name": "IGSF8", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P21926", "url": 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J.", "date": "2004", "authors": "Kovalenko Oleg V, Yang Xiuwei, Kolesnikova Tatiana V, Hemler Martin E", "reference": { "type": "PubMed", "id": "14556650", "url": "https://pubmed.ncbi.nlm.nih.gov/14556650" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P21926-1", "protein_name": "CD9 antigen", "gene_name": "CD9", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P21926", "url": "https://www.uniprot.org/uniprotkb/P21926" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.14556650", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": 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"field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The tetraspanin CD9 is preferentially expressed on the human CD4(+)CD45RA+ naive T cell population and is involved in T cell activation.", "journal": "Clin. Exp. Immunol.", "date": "2004", "authors": "Kobayashi H, Hosono O, Iwata S, Kawasaki H, Kuwana M, Tanaka H, Dang N H, Morimoto C", "reference": { "type": "PubMed", "id": "15196249", "url": "https://pubmed.ncbi.nlm.nih.gov/15196249" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P21926-1", "protein_name": "CD9 antigen", "gene_name": "CD9", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P21926", "url": "https://www.uniprot.org/uniprotkb/P21926" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.15196249", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { 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Med.", "date": "1991", "authors": "Miyake M, Koyama M, Seno M, Ikeyama S", "reference": { "type": "PubMed", "id": "1720807", "url": "https://pubmed.ncbi.nlm.nih.gov/1720807" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P21926-1", "protein_name": "CD9 antigen", "gene_name": "CD9", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P21926", "url": "https://www.uniprot.org/uniprotkb/P21926" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.1720807", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Molecular cloning of the CD9 antigen. 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III. The chymotryptic peptides, the peptides derived by cleavage at tryptophan residues, and the complete sequence of the protein.", "journal": "The Journal of biological chemistry", "date": "1979", "authors": "DeLange RJ, Williams LC, Drazin RE, Collier RJ", "reference": { "type": "PubMed", "id": "221484", "url": "https://pubmed.ncbi.nlm.nih.gov/221484" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P21926-1", "protein_name": "CD9 antigen", "gene_name": "CD9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16881-1", "protein_name": "Thioredoxin reductase 1, cytoplasmic", "gene_name": "TXNRD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08238-1", "protein_name": "Heat shock protein HSP 90-beta", "gene_name": "HSP90AB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07900-1", "protein_name": "Heat shock protein HSP 90-alpha", "gene_name": "HSP90AA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13639-1", "protein_name": "Elongation 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Thiol-dependent dissociation of a fraction of toxin into enzymically active and inactive fragments.", "journal": "The Journal of biological chemistry", "date": "1971", "authors": "Collier RJ, Kandel J", "reference": { "type": "PubMed", "id": "5545092", "url": "https://pubmed.ncbi.nlm.nih.gov/5545092" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P21926-1", "protein_name": "CD9 antigen", "gene_name": "CD9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16881-1", "protein_name": "Thioredoxin reductase 1, cytoplasmic", "gene_name": "TXNRD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08238-1", "protein_name": "Heat shock protein HSP 90-beta", "gene_name": "HSP90AB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07900-1", "protein_name": "Heat shock protein HSP 90-alpha", "gene_name": "HSP90AA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13639-1", "protein_name": "Elongation factor 2", "gene_name": "EEF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99075-1", "protein_name": "Proheparin-binding EGF-like growth factor", "gene_name": "HBEGF", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P21926", "url": "https://www.uniprot.org/uniprotkb/P21926" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.5545092", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "ADP-ribosylation of elongation factor 2 by diphtheria toxin. 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NMR spectra and proposed structures of ribosyl-diphthamide and its hydrolysis products.", "journal": "The Journal of biological chemistry", "date": "1980", "authors": "Van Ness BG, Howard JB, Bodley JW", "reference": { "type": "PubMed", "id": "7430147", "url": "https://pubmed.ncbi.nlm.nih.gov/7430147" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P21926-1", "protein_name": "CD9 antigen", "gene_name": "CD9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16881-1", "protein_name": "Thioredoxin reductase 1, cytoplasmic", "gene_name": "TXNRD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08238-1", "protein_name": "Heat shock protein HSP 90-beta", "gene_name": "HSP90AB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07900-1", "protein_name": "Heat shock protein HSP 90-alpha", "gene_name": "HSP90AA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13639-1", "protein_name": "Elongation factor 2", "gene_name": "EEF2", "tax_name": "Human" 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"url": "https://www.uniprot.org/uniprotkb/P21926" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.8194524", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], 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"o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Hypersensitivity to diphtheria toxin by mouse cells expressing both diphtheria toxin receptor and CD9 antigen.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "1993", "authors": "Brown JG, Almond BD, Naglich JG, Eidels L", "reference": { "type": "PubMed", "id": "8367482", "url": "https://pubmed.ncbi.nlm.nih.gov/8367482" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P21926-1", "protein_name": "CD9 antigen", "gene_name": "CD9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16881-1", "protein_name": "Thioredoxin reductase 1, cytoplasmic", "gene_name": "TXNRD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08238-1", "protein_name": "Heat shock protein HSP 90-beta", "gene_name": "HSP90AB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07900-1", "protein_name": "Heat shock protein HSP 90-alpha", "gene_name": "HSP90AA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13639-1", "protein_name": "Elongation factor 2", "gene_name": "EEF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99075-1", "protein_name": "Proheparin-binding EGF-like growth factor", "gene_name": "HBEGF", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P21926", "url": "https://www.uniprot.org/uniprotkb/P21926" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.8367482", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 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"total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Organization of the human CD9 gene.", "journal": "Genomics", "date": "1993", "authors": "Rubinstein E, Benoit P, Billard M, Plaisance S, Prenant M, Uzan G, Boucheix C", "reference": { "type": "PubMed", "id": "8486348", "url": "https://pubmed.ncbi.nlm.nih.gov/8486348" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P21926-1", "protein_name": "CD9 antigen", "gene_name": "CD9", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P21926", "url": "https://www.uniprot.org/uniprotkb/P21926" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.8486348", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Inherited and Somatic Defects in DDX41 in Myeloid Neoplasms.", "journal": "Cancer cell", "date": "2015", "authors": "Polprasert C, Schulze I, Sekeres MA, Makishima H, Przychodzen B, Hosono N, Singh J, Padgett RA, Gu X, Phillips JG, Clemente M, Parker Y, Lindner D, Dienes B, Jankowsky E, Saunthararajah Y, Du Y, Oakley K, Nguyen N, Mukherjee S, Pabst C, Godley LA, Churpek JE, Pollyea DA, Krug U, Berdel WE, Klein HU, Dugas M, Shiraishi Y, Chiba K, Tanaka H, Miyano S, Yoshida K, Ogawa S, Muller-Tidow C, Maciejewski JP", "reference": { "type": "PubMed", "id": "25920683", "url": "https://pubmed.ncbi.nlm.nih.gov/25920683" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9UJV9-1", "protein_name": "Probable ATP-dependent RNA helicase DDX41", "gene_name": "DDX41", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { 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mutations define families with a lower age of MDS/AML onset and lymphoid malignancies.", "journal": "Blood", "date": "2016", "authors": "Lewinsohn M, Brown AL, Weinel LM, Phung C, Rafidi G, Lee MK, Schreiber AW, Feng J, Babic M, Chong CE, Lee Y, Yong A, Suthers GK, Poplawski N, Altree M, Phillips K, Jaensch L, Fine M, D'Andrea RJ, Lewis ID, Medeiros BC, Pollyea DA, King MC, Walsh T, Keel S, Shimamura A, Godley LA, Hahn CN, Churpek JE, Scott HS", "reference": { "type": "PubMed", "id": "26712909", "url": "https://pubmed.ncbi.nlm.nih.gov/26712909" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9UJV9-1", "protein_name": "Probable ATP-dependent RNA helicase DDX41", "gene_name": "DDX41", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9UJV9", "url": "https://www.uniprot.org/uniprotkb/Q9UJV9" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens 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"title": "Mutations in FAM50A suggest that Armfield XLID syndrome is a spliceosomopathy.", "journal": "Nat. Commun.", "date": "2020", "authors": "Lee YR, Khan K, Armfield-Uhas K, Srikanth S, Thompson NA, Pardo M, Yu L, Norris JW, Peng Y, Gripp KW, Aleck KA, Li C, Spence E, Choi TI, Kwon SJ, Park HM, Yu D, Do Heo W, Mooney MR, Baig SM, Wentzensen IM, Telegrafi A, McWalter K, Moreland T, Roadhouse C, Ramsey K, Lyons MJ, Skinner C, Alexov E, Katsanis N, Stevenson RE, Choudhary JS, Adams DJ, Kim CH, Davis EE, Schwartz CE", "reference": { "type": "PubMed", "id": "32703943", "url": "https://pubmed.ncbi.nlm.nih.gov/32703943" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9UJV9-1", "protein_name": "Probable ATP-dependent RNA helicase DDX41", "gene_name": "DDX41", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q568K9-1", "protein_name": "Protein FAM50A", "gene_name": "fam50a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B0S754-1", "protein_name": "U5 small nuclear ribonucleoprotein 200 kDa helicase", "gene_name": "snrnp200", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q15029-1", "protein_name": "116 kDa U5 small nuclear ribonucleoprotein component", "gene_name": "EFTUD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "A0A8M2B960-1", "protein_name": "E3 ubiquitin-protein ligase HUWE1", "gene_name": "huwe1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4IGE7-1", "protein_name": "Tumor necrosis factor receptor superfamily member EDAR precursor", "gene_name": "edar", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1N822-1", "protein_name": "Little elongation complex subunit 1", "gene_name": "ice1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q6NWB3-1", "protein_name": "Splicing factor 3B subunit 4", "gene_name": "sf3b4", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q14320-1", "protein_name": "Protein FAM50A", "gene_name": "FAM50A", "tax_name": "Human" }, { "uniprot_canonical_ac": "A0A2R8PWG5-1", "protein_name": "Pre-mRNA-processing factor 6", "gene_name": "prpf6", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M2B4I2-1", "protein_name": "Pre-mRNA-processing-splicing factor 8", "gene_name": "prpf8", "tax_name": "Zebrafish" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9UJV9", "url": "https://www.uniprot.org/uniprotkb/Q9UJV9" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.32703943", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 11 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { 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