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Chem.", "date": "2005", "authors": "Di Valentin Emmanuel, Bontems S\u00e9bastien, Habran Lionel, Jolois Olivier, Markine-Goriaynoff Nicolas, Vanderplasschen Alain, Sadzot-Delvaux Catherine, Piette Jacques", "reference": { "type": "PubMed", "id": "15843171", "url": "https://pubmed.ncbi.nlm.nih.gov/15843171" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13888-1", "protein_name": "General transcription factor IIH subunit 2", "gene_name": "GTF2H2C_2; GTF2H2C; GTF2H2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29083-1", "protein_name": "General transcription factor IIE subunit 1", "gene_name": "GTF2E1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13888", "url": "https://www.uniprot.org/uniprotkb/Q13888" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.15843171", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The intricate network between the p34 and p44 subunits is central to the activity of the transcription/DNA repair factor TFIIH.", "journal": "Nucleic acids research", "date": "2017", "authors": "Radu L, Schoenwetter E, Braun C, Marcoux J, Koelmel W, Schmitt DR, Kuper J, Cianferani S, Egly JM, Poterszman A, Kisker C", "reference": { "type": "PubMed", "id": "28977422", "url": "https://pubmed.ncbi.nlm.nih.gov/28977422" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13888-1", "protein_name": "General transcription factor IIH subunit 2", "gene_name": "GTF2H2C_2; 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[] } ] }, { "title": "Cloning and characterization of the human and mouse PDE7B, a novel cAMP-specific cyclic nucleotide phosphodiesterase.", "journal": "Biochemical and biophysical research communications", "date": "2000", "authors": "Gardner C, Robas N, Cawkill D, Fidock M", "reference": { "type": "PubMed", "id": "10872825", "url": "https://pubmed.ncbi.nlm.nih.gov/10872825" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9NP56-1", "protein_name": "3',5'-cyclic-AMP phosphodiesterase 7B", "gene_name": "PDE7B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9QXQ1-1", "protein_name": "3',5'-cyclic-AMP phosphodiesterase 7B", "gene_name": "Pde7b", "tax_name": "Mouse" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9NP56", "url": "https://www.uniprot.org/uniprotkb/Q9NP56" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": 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], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "LRPPRC and SLIRP interact in a ribonucleoprotein complex that regulates posttranscriptional gene expression in mitochondria.", "journal": "Molecular biology of the cell", "date": "2010", "authors": "Sasarman F, Brunel-Guitton C, Antonicka H, Wai T, Shoubridge EA", "reference": { "type": "PubMed", "id": "20200222", "url": "https://pubmed.ncbi.nlm.nih.gov/20200222" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9Y3B8-1", "protein_name": "Oligoribonuclease, mitochondrial", 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degradation.", "journal": "Nucleic acids research", "date": "2012-05", "authors": "Lin Chia Liang, Wang Yi-Ting, Yang Wei-Zen, Hsiao Yu-Yuan, Yuan Hanna S", "reference": { "type": "PubMed", "id": "22210891", "url": "https://pubmed.ncbi.nlm.nih.gov/22210891" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9Y3B8-1", "protein_name": "Oligoribonuclease, mitochondrial", "gene_name": "REXO2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9GZT3-1", "protein_name": "SRA stem-loop-interacting RNA-binding protein, mitochondrial", "gene_name": "SLIRP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12849-1", "protein_name": "G-rich sequence factor 1", "gene_name": "GRSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42704-1", "protein_name": "Leucine-rich PPR motif-containing protein, mitochondrial", "gene_name": "LRPPRC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYB8-1", "protein_name": "ATP-dependent RNA helicase SUPV3L1, 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"species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9Y3B8", "url": "https://www.uniprot.org/uniprotkb/Q9Y3B8" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.23221631", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", 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"count": 0 } ], "sort_fields": [] } ] }, { "title": "The mitochondrial RNA-binding protein GRSF1 localizes to RNA granules and is required for posttranscriptional mitochondrial gene expression.", "journal": "Cell metabolism", "date": "2013-03-05", "authors": "Antonicka Hana, Sasarman Florin, Nishimura Tamiko, Paupe Vincent, Shoubridge Eric A", "reference": { "type": "PubMed", "id": "23473033", "url": "https://pubmed.ncbi.nlm.nih.gov/23473033" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9Y3B8-1", "protein_name": "Oligoribonuclease, mitochondrial", "gene_name": "REXO2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9GZT3-1", "protein_name": "SRA stem-loop-interacting RNA-binding protein, mitochondrial", "gene_name": "SLIRP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12849-1", "protein_name": "G-rich sequence factor 1", "gene_name": "GRSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42704-1", "protein_name": "Leucine-rich PPR motif-containing protein, mitochondrial", "gene_name": "LRPPRC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYB8-1", "protein_name": "ATP-dependent RNA helicase SUPV3L1, mitochondrial", "gene_name": "SUPV3L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TCS8-1", "protein_name": "Polyribonucleotide nucleotidyltransferase 1, mitochondrial", "gene_name": "PNPT1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9Y3B8", "url": "https://www.uniprot.org/uniprotkb/Q9Y3B8" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.23473033", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "REXO2 is an oligoribonuclease active in human mitochondria.", "journal": "PloS one", "date": "2013", "authors": "Bruni F, Gramegna P, Oliveira JM, Lightowlers RN, Chrzanowska-Lightowlers ZM", "reference": { "type": "PubMed", "id": "23741365", "url": "https://pubmed.ncbi.nlm.nih.gov/23741365" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9Y3B8-1", "protein_name": "Oligoribonuclease, mitochondrial", "gene_name": "REXO2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9GZT3-1", "protein_name": "SRA 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}, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Dedicated surveillance mechanism controls G-quadruplex forming non-coding RNAs in human mitochondria.", "journal": "Nature communications", "date": "2018", "authors": "Pietras Z, Wojcik MA, Borowski LS, Szewczyk M, Kulinski TM, Cysewski D, Stepien PP, Dziembowski A, Szczesny RJ", "reference": { "type": "PubMed", "id": "29967381", "url": "https://pubmed.ncbi.nlm.nih.gov/29967381" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9Y3B8-1", "protein_name": "Oligoribonuclease, mitochondrial", "gene_name": "REXO2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9GZT3-1", "protein_name": "SRA stem-loop-interacting RNA-binding protein, mitochondrial", "gene_name": "SLIRP", "tax_name": "Human" }, { "uniprot_canonical_ac": 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Genet.", "date": "2002", "authors": "Migliosi V, Modamio-H\u00f8ybj\u00f8r S, Moreno-Pelayo M A, Rodr\u00edguez-Ballesteros M, Villamar M, Teller\u00eda D, Men\u00e9ndez I, Moreno F, Del Castillo I", "reference": { "type": "PubMed", "id": "12114484", "url": "https://pubmed.ncbi.nlm.nih.gov/12114484" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9HC10-1", "protein_name": "Otoferlin", "gene_name": "OTOF", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9HC10", "url": "https://www.uniprot.org/uniprotkb/Q9HC10" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.12114484", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ 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Genet.", "date": "2005", "authors": "Hutchin T, Coy N N, Conlon H, Telford E, Bromelow K, Blaydon D, Taylor G, Coghill E, Brown S, Trembath R, Liu X Z, Bitner-Glindzicz M, Mueller R", "reference": { "type": "PubMed", "id": "16283880", "url": "https://pubmed.ncbi.nlm.nih.gov/16283880" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9HC10-1", "protein_name": "Otoferlin", "gene_name": "OTOF", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9HC10", "url": "https://www.uniprot.org/uniprotkb/Q9HC10" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.16283880", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ 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Biol. Chem.", "date": "2003", "authors": "Tatsumi Yasutoshi, Ohta Satoshi, Kimura Hiroshi, Tsurimoto Toshiki, Obuse Chikashi", "reference": { "type": "PubMed", "id": "12909627", "url": "https://pubmed.ncbi.nlm.nih.gov/12909627" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13415-1", "protein_name": "Origin recognition complex subunit 1", "gene_name": "ORC1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13415", "url": "https://www.uniprot.org/uniprotkb/Q13415" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.12909627", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", 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"field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Mutations in ORC1, encoding the largest subunit of the origin recognition complex, cause microcephalic primordial dwarfism resembling Meier-Gorlin syndrome.", "journal": "Nature genetics", "date": "2011", "authors": "Bicknell LS, Walker S, Klingseisen A, Stiff T, Leitch A, Kerzendorfer C, Martin CA, Yeyati P, Al Sanna N, Bober M, Johnson D, Wise C, Jackson AP, O'Driscoll M, Jeggo PA", "reference": { "type": "PubMed", "id": "21358633", "url": "https://pubmed.ncbi.nlm.nih.gov/21358633" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13415-1", "protein_name": "Origin recognition complex subunit 1", "gene_name": "ORC1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13415", "url": "https://www.uniprot.org/uniprotkb/Q13415" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.21358633", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { 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