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Biol. Chem.", "date": "2001", "authors": "Sekiguchi T, Hirose E, Nakashima N, Ii M, Nishimoto T", "reference": { "type": "PubMed", "id": "11073942", "url": "https://pubmed.ncbi.nlm.nih.gov/11073942" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9NQL2-1", "protein_name": "Ras-related GTP-binding protein D", "gene_name": "RRAGD", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HB90-1", "protein_name": "Ras-related GTP-binding protein C", "gene_name": "RRAGC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5VZM2-1", "protein_name": "Ras-related GTP-binding protein B", "gene_name": "RRAGB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7L523-1", "protein_name": "Ras-related GTP-binding protein A", "gene_name": "RRAGA", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9NQL2", "url": "https://www.uniprot.org/uniprotkb/Q9NQL2" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.11073942", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A novel human nucleolar protein, Nop132, binds to the G proteins, RRAG A/C/D.", "journal": "J. Biol. Chem.", "date": "2004", "authors": "Sekiguchi T, Todaka Y, Wang Y, Hirose E, Nakashima N, Nishimoto T", "reference": { "type": "PubMed", "id": "14660641", "url": "https://pubmed.ncbi.nlm.nih.gov/14660641" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9NQL2-1", "protein_name": "Ras-related GTP-binding protein D", "gene_name": "RRAGD", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HB90-1", "protein_name": "Ras-related GTP-binding protein C", "gene_name": "RRAGC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q76FK4-1", "protein_name": "Nucleolar protein 8", "gene_name": "NOL8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y221-1", "protein_name": "60S ribosome subunit biogenesis protein NIP7 homolog", "gene_name": "NIP7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7L523-1", "protein_name": "Ras-related GTP-binding protein A", "gene_name": "RRAGA", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9NQL2", "url": "https://www.uniprot.org/uniprotkb/Q9NQL2" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.14660641", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 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"Ras related GTP binding D promotes aerobic glycolysis of hepatocellular carcinoma.", "journal": "Annals of hepatology", "date": "2021", "authors": "Ding L, Liang X", "reference": { "type": "PubMed", "id": "33434687", "url": "https://pubmed.ncbi.nlm.nih.gov/33434687" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9NQL2-1", "protein_name": "Ras-related GTP-binding protein D", "gene_name": "RRAGD", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9NQL2", "url": "https://www.uniprot.org/uniprotkb/Q9NQL2" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.33434687", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ 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Bergmann C, Altmuller J, Thiele H, Beck BB, Dahan K, Sabatini D, Liebau MC, Vargas-Poussou R, Knoers NVAM, Konrad M, de Baaij JHF", "reference": { "type": "PubMed", "id": "34607910", "url": "https://pubmed.ncbi.nlm.nih.gov/34607910" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9NQL2-1", "protein_name": "Ras-related GTP-binding protein D", "gene_name": "RRAGD", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7TT45-1", "protein_name": "Ras-related GTP-binding protein D", "gene_name": "Rragd", "tax_name": "Mouse" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9NQL2", "url": "https://www.uniprot.org/uniprotkb/Q9NQL2" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.34607910", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": 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Francesca Del, Torella Annalaura, Ruosi Carolina, Fecarotta Simona, Parenti Giancarlo, Staiano Leopoldo, Bellin Milena, Huber Lukas A, De Virgilio Claudio, Trepiccione Francesco, Nigro Vincenzo, Ballabio Andrea", "reference": { "type": "PubMed", "id": "37188688", "url": "https://pubmed.ncbi.nlm.nih.gov/37188688" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9NQL2-1", "protein_name": "Ras-related GTP-binding protein D", "gene_name": "RRAGD", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9NQL2", "url": "https://www.uniprot.org/uniprotkb/Q9NQL2" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.37188688", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", 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F, Hatada I, Jinno Y, Iwasaka T, Katsuki T, Mukai T", "reference": { "type": "PubMed", "id": "12504849", "url": "https://pubmed.ncbi.nlm.nih.gov/12504849" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9H0X9-1", "protein_name": "Oxysterol-binding protein-related protein 5", "gene_name": "OSBPL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9ER64-1", "protein_name": "Oxysterol-binding protein-related protein 5", "gene_name": "Osbpl5", "tax_name": "Mouse" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9H0X9", "url": "https://www.uniprot.org/uniprotkb/Q9H0X9" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.12504849", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", 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"sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": 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gene for mitochondrial acetoacetyl-coenzyme A thiolase. A complete analysis of two generations of a family with 3-ketothiolase deficiency.", "journal": "The Journal of clinical investigation", "date": "1992", "authors": "Fukao T, Yamaguchi S, Orii T, Schutgens RB, Osumi T, Hashimoto T", "reference": { "type": "PubMed", "id": "1346617", "url": "https://pubmed.ncbi.nlm.nih.gov/1346617" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P24752-1", "protein_name": "Acetyl-CoA acetyltransferase, mitochondrial", "gene_name": "ACAT1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P24752", "url": "https://www.uniprot.org/uniprotkb/P24752" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.1346617", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Characterization of human DHRS6, an orphan short chain dehydrogenase/reductase enzyme: a novel, cytosolic type 2 R-beta-hydroxybutyrate dehydrogenase.", "journal": "The Journal of biological chemistry", "date": "2006", "authors": "Guo K, Lukacik P, Papagrigoriou E, Meier M, Lee WH, Adamski J, Oppermann U", "reference": { "type": "PubMed", "id": "16380372", "url": "https://pubmed.ncbi.nlm.nih.gov/16380372" 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Clin. Invest.", "date": "1990", "authors": "Fukao T, Yamaguchi S, Kano M, Orii T, Fujiki Y, Osumi T, Hashimoto T", "reference": { "type": "PubMed", "id": "1979337", "url": "https://pubmed.ncbi.nlm.nih.gov/1979337" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P24752-1", "protein_name": "Acetyl-CoA acetyltransferase, mitochondrial", "gene_name": "ACAT1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P24752", "url": "https://www.uniprot.org/uniprotkb/P24752" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.1979337", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" 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"title": "ACAT1-mediated METTL3 acetylation inhibits cell migration and invasion in triple negative breast cancer.", "journal": "Genes and immunity", "date": "2023-03-08", "authors": "Zhang Gong, Huang Ruyi, Zhao Hui, Xia Yuke, Huang Hui, Qian Mengjia, Fu Yuehe, Cui Yiyao", "reference": { "type": "PubMed", "id": "36890220", "url": "https://pubmed.ncbi.nlm.nih.gov/36890220" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P24752-1", "protein_name": "Acetyl-CoA acetyltransferase, mitochondrial", "gene_name": "ACAT1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P24752", "url": "https://www.uniprot.org/uniprotkb/P24752" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.36890220", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { 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"authors": "He Wei, Li Yanfang, Liu Song-Bai, Chang Ying, Han Shiyuan, Han Xingyu, Ma Zixin, Amin Hesham M, Song Yao-Hua, Zhou Jin", "reference": { "type": "PubMed", "id": "39247186", "url": "https://pubmed.ncbi.nlm.nih.gov/39247186" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P24752-1", "protein_name": "Acetyl-CoA acetyltransferase, mitochondrial", "gene_name": "ACAT1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P24752", "url": "https://www.uniprot.org/uniprotkb/P24752" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.39247186", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", 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Evidence for the cytosolic activation of acetoacetate.", "journal": "The Journal of biological chemistry", "date": "1982", "authors": "Endemann G, Goetz PG, Edmond J, Brunengraber H", "reference": { "type": "PubMed", "id": "7061490", "url": "https://pubmed.ncbi.nlm.nih.gov/7061490" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P24752-1", "protein_name": "Acetyl-CoA acetyltransferase, mitochondrial", "gene_name": "ACAT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TB92-1", "protein_name": "3-hydroxy-3-methylglutaryl-CoA lyase, cytoplasmic", "gene_name": "HMGCLL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35914-1", "protein_name": "Hydroxymethylglutaryl-CoA lyase, mitochondrial", "gene_name": "HMGCL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P54868-1", "protein_name": "Hydroxymethylglutaryl-CoA synthase, mitochondrial", "gene_name": "HMGCS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUT1-1", "protein_name": 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Cloning of human and chicken liver HL cDNAs and characterization of a mutation causing human HL deficiency.", "journal": "The Journal of biological chemistry", "date": "1993", "authors": "Mitchell GA, Robert MF, Hruz PW, Wang S, Fontaine G, Behnke CE, Mende-Mueller LM, Schappert K, Lee C, Gibson KM, Miziorko HM, et al.", "reference": { "type": "PubMed", "id": "8440722", "url": "https://pubmed.ncbi.nlm.nih.gov/8440722" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P24752-1", "protein_name": "Acetyl-CoA acetyltransferase, mitochondrial", "gene_name": "ACAT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TB92-1", "protein_name": "3-hydroxy-3-methylglutaryl-CoA lyase, cytoplasmic", "gene_name": "HMGCLL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35914-1", "protein_name": "Hydroxymethylglutaryl-CoA lyase, mitochondrial", "gene_name": "HMGCL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P54868-1", "protein_name": 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missense mutations in two Japanese families with mitochondrial acetoacetyl-CoA thiolase deficiency.", "journal": "Human mutation", "date": "1998", "authors": "Fukao T, Nakamura H, Song XQ, Nakamura K, Orii KE, Kohno Y, Kano M, Yamaguchi S, Hashimoto T, Orii T, Kondo N", "reference": { "type": "PubMed", "id": "9744475", "url": "https://pubmed.ncbi.nlm.nih.gov/9744475" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P24752-1", "protein_name": "Acetyl-CoA acetyltransferase, mitochondrial", "gene_name": "ACAT1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P24752", "url": "https://www.uniprot.org/uniprotkb/P24752" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.9744475", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { 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disorder genome-wide association studies replicate in a Finnish bipolar family-cohort.", "journal": "Molecular psychiatry", "date": "2009", "authors": "Ollila HM, Soronen P, Silander K, Palo OM, Kieseppa T, Kaunisto MA, Lonnqvist J, Peltonen L, Partonen T, Paunio T", "reference": { "type": "PubMed", "id": "19308021", "url": "https://pubmed.ncbi.nlm.nih.gov/19308021" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q6DKJ4-1", "protein_name": "Nucleoredoxin", "gene_name": "NXN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRY0-1", "protein_name": "Zinc transporter ZIP3", "gene_name": "SLC39A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96PQ0-1", "protein_name": "VPS10 domain-containing receptor SorCS2", "gene_name": "SORCS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NDG6-1", "protein_name": "ATP-dependent RNA helicase TDRD9", "gene_name": "TDRD9", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, 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interaction between human Sec63 and nucleoredoxin may provide the missing link between the SEC63 gene and polycystic liver disease.", "journal": "FEBS letters", "date": "2011", "authors": "Muller L, Funato Y, Miki H, Zimmermann R", "reference": { "type": "PubMed", "id": "21251912", "url": "https://pubmed.ncbi.nlm.nih.gov/21251912" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q6DKJ4-1", "protein_name": "Nucleoredoxin", "gene_name": "NXN", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q6DKJ4", "url": "https://www.uniprot.org/uniprotkb/Q6DKJ4" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.21251912", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", 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S, Ferreira BM, Vianna-Morgante AM, Ellard S, Parrish A, Stals K, Flores-Daboub J, Jhangiani SN, Gibbs RA, Brunner HG, Sutton VR, Lupski JR, Carvalho CMB", "reference": { "type": "PubMed", "id": "29276006", "url": "https://pubmed.ncbi.nlm.nih.gov/29276006" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q6DKJ4-1", "protein_name": "Nucleoredoxin", "gene_name": "NXN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14332-1", "protein_name": "Frizzled-2", "gene_name": "FZD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41221-1", "protein_name": "Protein Wnt-5a", "gene_name": "WNT5A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60763-1", "protein_name": "Ras-related C3 botulinum toxin substrate 3", "gene_name": "RAC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75487-1", "protein_name": "Glypican-4", "gene_name": "GPC4", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Novel pathogenic 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "NXN suppresses metastasis of hepatocellular carcinoma by promoting degradation of Snail through binding to DUB3.", "journal": "Cell death & disease", "date": "2022", "authors": "Zhang Y, Zuo D, Qiu J, Li K, Niu Y, Yuan Y, Qiu Y, Qiao L, He W, Wang C, Yuan Y, Li B", "reference": { "type": "PubMed", "id": "35927236", "url": "https://pubmed.ncbi.nlm.nih.gov/35927236" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q6DKJ4-1", "protein_name": "Nucleoredoxin", "gene_name": "NXN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6R6M4-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 17", "gene_name": "USP17L2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q6DKJ4", "url": "https://www.uniprot.org/uniprotkb/Q6DKJ4" } ], "common_name": "Human", "glygen_name": "Human", 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"field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Knockdown of IL4I1 Improved High Glucose-evoked Insulin Resistance in HepG2 Cells by Alleviating Inflammation and Lipotoxicity Through AHR Activation.", "journal": 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"o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Structural mechanism for heparin-binding of the third Kunitz domain of human tissue factor pathway inhibitor.", "journal": "Biochemistry", "date": "2002", "authors": "Mine Shouhei, Yamazaki Toshio, Miyata Toshiyuki, Hara Saburo, Kato Hisao", "reference": { "type": "PubMed", "id": "11772005", "url": "https://pubmed.ncbi.nlm.nih.gov/11772005" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P10646-1", "protein_name": "Tissue factor pathway inhibitor", "gene_name": "TFPI", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P10646", "url": "https://www.uniprot.org/uniprotkb/P10646" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.11772005", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The asparagine-linked oligosaccharides on tissue factor pathway inhibitor terminate with SO4-4GalNAc beta 1, 4GlcNAc beta 1,2 Mana alpha.", "journal": "The Journal of biological chemistry", "date": "1992", "authors": "Smith PL, Skelton TP, Fiete D, Dharmesh SM, Beranek MC, MacPhail L, Broze GJ Jr, Baenziger JU", "reference": { "type": "PubMed", "id": "1388166", "url": "https://pubmed.ncbi.nlm.nih.gov/1388166" }, "referenced_glycans": [ { "glytoucan_ac": "G51562OR" }, { "glytoucan_ac": "G07947TY" }, { "glytoucan_ac": "G65832JS" }, { "glytoucan_ac": "G43984TE" }, { "glytoucan_ac": "G78059CC" }, { "glytoucan_ac": "G63889NK" }, { "glytoucan_ac": "G57196QI" }, { "glytoucan_ac": "G49632WD" }, { "glytoucan_ac": "G49743VF" }, { "glytoucan_ac": "G86357DX" }, { "glytoucan_ac": "G45359RY" }, { "glytoucan_ac": "G45700OA" }, { "glytoucan_ac": "G46422KL" }, { "glytoucan_ac": "G24413UY" }, { "glytoucan_ac": "G31991IV" }, { "glytoucan_ac": "G32673DL" } ], "referenced_proteins": [ { "uniprot_canonical_ac": "P10646-1", "protein_name": "Tissue factor pathway inhibitor", "gene_name": "TFPI", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P10646", "url": "https://www.uniprot.org/uniprotkb/P10646" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "glycosylation": [ { "glytoucan_ac": "G07947TY", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "GlycoSuiteDB curation notes. Reported structure can be attached to the following: N-145, N-195, S-202, T-203", "icn3d_view": {}, "start_pos": 145, "start_aa": "Asn", "end_pos": 145, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn145", "evidence": [ { "id": "8639592", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/8639592" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "1388166", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/1388166" } ], "filter_code": "001000000000000000000.0000000.00010000000000.0010000.1110000000.000000000001000000.10000.01001", "uniprot_canonical_ac": "P10646-1" }, { "glytoucan_ac": "G31991IV", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "GlycoSuiteDB curation notes. Reported structure can be attached to the following: N-145, N-195, S-202, T-203", "icn3d_view": {}, "start_pos": 145, "start_aa": "Asn", "end_pos": 145, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn145", "evidence": [ { "id": "1388166", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/1388166" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "8639592", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/8639592" } ], "filter_code": "001000000000000000000.0000000.00010000000000.0010000.1110000000.000000000001000000.10000.01001", "uniprot_canonical_ac": "P10646-1" }, { "glytoucan_ac": "G45359RY", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "GlycoSuiteDB curation notes. Reported structure can be attached to the following: N-145, N-195, S-202, T-203", "icn3d_view": {}, "start_pos": 145, "start_aa": "Asn", "end_pos": 145, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn145", "evidence": [ { "id": "8639592", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/8639592" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "1388166", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/1388166" } ], "filter_code": "001000000000000000000.0000000.00010000000000.0010000.1110000000.010100000011111000.10000.01001", "uniprot_canonical_ac": "P10646-1" }, { "glytoucan_ac": "G51562OR", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "GlycoSuiteDB curation notes. Reported structure can be attached to the following: N-145, N-195, S-202, T-203", "icn3d_view": {}, "start_pos": 145, "start_aa": "Asn", "end_pos": 145, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn145", "evidence": [ { "id": "1388166", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/1388166" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "8639592", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/8639592" } ], "filter_code": "001000000000000000000.0000000.00010000000000.0001000.1110000000.000000000001000000.10000.01001", "uniprot_canonical_ac": "P10646-1" }, { "glytoucan_ac": "G63889NK", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "GlycoSuiteDB curation notes. Reported structure can be attached to the following: N-145, N-195, S-202, T-203", "icn3d_view": {}, "start_pos": 145, "start_aa": "Asn", "end_pos": 145, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn145", "evidence": [ { "id": "8639592", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/8639592" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "1388166", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/1388166" } ], "filter_code": "001000000000000000000.0000000.00010000000000.0010000.1110000000.000000000011111000.10000.01001", "uniprot_canonical_ac": "P10646-1" }, { "glytoucan_ac": "G65832JS", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "GlycoSuiteDB curation notes. Reported structure can be attached to the following: N-145, N-195, S-202, T-203", "icn3d_view": {}, "start_pos": 145, "start_aa": "Asn", "end_pos": 145, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn145", "evidence": [ { "id": "1388166", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/1388166" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "8639592", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/8639592" } ], "filter_code": "001000000000000000000.0000000.00010000000000.0010000.1110000000.000000000001000000.10000.01001", "uniprot_canonical_ac": "P10646-1" }, { "glytoucan_ac": "G78059CC", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "GlycoSuiteDB curation notes. Reported structure can be attached to the following: N-145, N-195, S-202, T-203", "icn3d_view": {}, "start_pos": 145, "start_aa": "Asn", "end_pos": 145, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn145", "evidence": [ { "id": "1388166", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/1388166" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "8639592", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/8639592" } ], "filter_code": "001000000000000000000.0000000.00010000000000.0100000.1110000000.010100000001111000.10000.01001", "uniprot_canonical_ac": "P10646-1" }, { "glytoucan_ac": "G86357DX", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "GlycoSuiteDB curation notes. Reported structure can be attached to the following: N-145, N-195, S-202, T-203", "icn3d_view": {}, "start_pos": 145, "start_aa": "Asn", "end_pos": 145, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn145", "evidence": [ { "id": "8639592", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/8639592" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "1388166", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/1388166" } ], "filter_code": "001000000000000000000.0000000.00010000000000.0010000.1110000000.010000000011111000.10000.01001", "uniprot_canonical_ac": "P10646-1" }, { "glytoucan_ac": "G07947TY", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "GlycoSuiteDB curation notes. Reported structure can be attached to the following: N-145, N-195, S-202, T-203", "icn3d_view": {}, "start_pos": 195, "start_aa": "Asn", "end_pos": 195, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn195", "evidence": [ { "id": "1388166", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/1388166" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "8639592", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/8639592" } ], "filter_code": "001000000000000000000.0000000.00010000000000.0010000.1110000000.000000000001000000.10000.01001", "uniprot_canonical_ac": "P10646-1" }, { "glytoucan_ac": "G31991IV", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "GlycoSuiteDB curation notes. Reported structure can be attached to the following: N-145, N-195, S-202, T-203", "icn3d_view": {}, "start_pos": 195, "start_aa": "Asn", "end_pos": 195, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn195", "evidence": [ { "id": "8639592", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/8639592" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "1388166", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/1388166" } ], "filter_code": "001000000000000000000.0000000.00010000000000.0010000.1110000000.000000000001000000.10000.01001", "uniprot_canonical_ac": "P10646-1" }, { "glytoucan_ac": "G45359RY", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "GlycoSuiteDB curation notes. Reported structure can be attached to the following: N-145, N-195, S-202, T-203", "icn3d_view": {}, "start_pos": 195, "start_aa": "Asn", "end_pos": 195, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn195", "evidence": [ { "id": "1388166", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/1388166" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "8639592", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/8639592" } ], "filter_code": "001000000000000000000.0000000.00010000000000.0010000.1110000000.010100000011111000.10000.01001", "uniprot_canonical_ac": "P10646-1" }, { "glytoucan_ac": "G51562OR", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "GlycoSuiteDB curation notes. Reported structure can be attached to the following: N-145, N-195, S-202, T-203", "icn3d_view": {}, "start_pos": 195, "start_aa": "Asn", "end_pos": 195, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn195", "evidence": [ { "id": "8639592", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/8639592" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "1388166", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/1388166" } ], "filter_code": "001000000000000000000.0000000.00010000000000.0001000.1110000000.000000000001000000.10000.01001", "uniprot_canonical_ac": "P10646-1" }, { "glytoucan_ac": "G63889NK", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "GlycoSuiteDB curation notes. Reported structure can be attached to the following: N-145, N-195, S-202, T-203", "icn3d_view": {}, "start_pos": 195, "start_aa": "Asn", "end_pos": 195, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn195", "evidence": [ { "id": "1388166", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/1388166" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "8639592", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/8639592" } ], "filter_code": "001000000000000000000.0000000.00010000000000.0010000.1110000000.000000000011111000.10000.01001", "uniprot_canonical_ac": "P10646-1" }, { "glytoucan_ac": "G65832JS", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "GlycoSuiteDB curation notes. Reported structure can be attached to the following: N-145, N-195, S-202, T-203", "icn3d_view": {}, "start_pos": 195, "start_aa": "Asn", "end_pos": 195, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn195", "evidence": [ { "id": "8639592", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/8639592" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "1388166", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/1388166" } ], "filter_code": "001000000000000000000.0000000.00010000000000.0010000.1110000000.000000000001000000.10000.01001", "uniprot_canonical_ac": "P10646-1" }, { "glytoucan_ac": "G78059CC", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "GlycoSuiteDB curation notes. 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dependent inhibitor of the extrinsic pathway of coagulation.", "journal": "Biochemistry", "date": "1991", "authors": "van der Logt CP, Reitsma PH, Bertina RM", "reference": { "type": "PubMed", "id": "1993173", "url": "https://pubmed.ncbi.nlm.nih.gov/1993173" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P10646-1", "protein_name": "Tissue factor pathway inhibitor", "gene_name": "TFPI", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P10646", "url": "https://www.uniprot.org/uniprotkb/P10646" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.1993173", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", 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Intro/exon gene organization and localization of the gene to chromosome 2.", "journal": "J. Biol. Chem.", "date": "1991", "authors": "Girard T J, Eddy R, Wesselschmidt R L, MacPhail L A, Likert K M, Byers M G, Shows T B, Broze G J", "reference": { "type": "PubMed", "id": "2002045", "url": "https://pubmed.ncbi.nlm.nih.gov/2002045" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P10646-1", "protein_name": "Tissue factor pathway inhibitor", "gene_name": "TFPI", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P10646", "url": "https://www.uniprot.org/uniprotkb/P10646" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.2002045", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Reciprocal coupling of coagulation and innate immunity via neutrophil serine proteases.", "journal": "Nature medicine", "date": "2010-08", "authors": "Massberg Steffen, Grahl Lenka, von Bruehl Marie-Luise, Manukyan Davit, Pfeiler Susanne, Goosmann Christian, Brinkmann Volker, Lorenz Michael, Bidzhekov Kiril, Khandagale Avinash B, Konrad Ildiko, Kennerknecht Elisabeth, Reges Katja, Holdenrieder Stefan, Braun Siegmund, Reinhardt Christoph, Spannagl Michael, Preissner Klaus T, Engelmann Bernd", "reference": { "type": "PubMed", "id": "20676107", "url": "https://pubmed.ncbi.nlm.nih.gov/20676107" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P10646-1", "protein_name": "Tissue factor pathway inhibitor", "gene_name": "TFPI", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08246-1", "protein_name": "Neutrophil elastase", "gene_name": "ELANE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q3UP87-1", "protein_name": "Neutrophil elastase", "gene_name": "Elane", "tax_name": "Mouse" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P10646", "url": "https://www.uniprot.org/uniprotkb/P10646" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 115, "end_pos": 115, "sequence_org": "T", "sequence_mut": "F", "comment": "Results in resistant to ELANE-mediated cleavage. 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"protein_name": "Tissue factor pathway inhibitor", "gene_name": "TFPI", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94875-1", "protein_name": "Sorbin and SH3 domain-containing protein 2", "gene_name": "SORBS2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P10646", "url": "https://www.uniprot.org/uniprotkb/P10646" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.38501385", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Elevated TFPI is a prognostic factor in hepatocellular carcinoma: Putative role of miR-7-5p and miR-1236-3p.", "journal": "Thrombosis research", "date": "2024-09", "authors": "Sletten M, Skogstr\u00f8m K B, Lind S M, Tinholt M, Stavik B, Rayner S, Iversen N", "reference": { "type": "PubMed", "id": "38945092", "url": "https://pubmed.ncbi.nlm.nih.gov/38945092" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P10646-1", "protein_name": "Tissue factor pathway inhibitor", "gene_name": "TFPI", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P10646", "url": "https://www.uniprot.org/uniprotkb/P10646" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.38945092", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Amino acid sequence and carbohydrate structure of a recombinant human tissue factor pathway inhibitor expressed in Chinese hamster ovary cells: one N-and two O-linked carbohydrate chains are located between Kunitz domains 2 and 3 and one N-linked carbohydrate chain is in Kunitz domain 2.", "journal": "Biochemistry", "date": "1996", "authors": "Nakahara Y, Miyata T, Hamuro T, Funatsu A, Miyagi M, Tsunasawa S, Kato H", "reference": { "type": "PubMed", "id": "8639592", "url": "https://pubmed.ncbi.nlm.nih.gov/8639592" }, "referenced_glycans": [ { "glytoucan_ac": "G90093AU" }, { "glytoucan_ac": "G51562OR" }, { "glytoucan_ac": "G07947TY" }, { "glytoucan_ac": "G72797UR" }, { "glytoucan_ac": "G65832JS" }, { "glytoucan_ac": "G78059CC" }, { "glytoucan_ac": "G70894RY" }, { "glytoucan_ac": "G63889NK" }, { "glytoucan_ac": "G49632WD" }, { "glytoucan_ac": "G86357DX" }, { "glytoucan_ac": "G29931IJ" }, { "glytoucan_ac": "G45359RY" }, { "glytoucan_ac": "G23863VK" }, { "glytoucan_ac": "G31544HA" }, { "glytoucan_ac": "G31991IV" } ], "referenced_proteins": [ { "uniprot_canonical_ac": "P10646-1", "protein_name": "Tissue 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Reported structure can be attached to the following: N-145, N-195, S-202, T-203", "icn3d_view": {}, "start_pos": 145, "start_aa": "Asn", "end_pos": 145, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn145", "evidence": [ { "id": "8639592", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/8639592" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "1388166", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/1388166" } ], "filter_code": "001000000000000000000.0000000.00010000000000.0010000.1110000000.010000000011111000.10000.01001", "uniprot_canonical_ac": "P10646-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 145, "start_aa": "Asn", "end_pos": 145, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn145", "evidence": [ { "id": "P10646", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P10646#ptm_processing" }, { "id": "19017259", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19017259" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "8639592", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/8639592" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P10646-1" }, { "glytoucan_ac": "G07947TY", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "GlycoSuiteDB curation notes. 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