[ { "title": "Endoplasmic reticulum-bound ribosomes reside in stable association with the translocon following termination of protein synthesis.", "journal": "The Journal of biological chemistry", "date": "2002", "authors": "Potter MD, Nicchitta CV", "reference": { "type": "PubMed", "id": "11964406", "url": "https://pubmed.ncbi.nlm.nih.gov/11964406" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P18621-1", "protein_name": "Large ribosomal subunit protein uL22", "gene_name": "RPL17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46776-1", "protein_name": "Large ribosomal subunit protein uL15", "gene_name": "RPL27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46782-1", "protein_name": "Small ribosomal subunit protein uS7", "gene_name": "RPS5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47914-1", "protein_name": "Large ribosomal subunit protein eL29", "gene_name": "RPL29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62244-1", "protein_name": "Small ribosomal subunit protein uS8", "gene_name": "RPS15A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22090-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 1", "gene_name": "RPS4Y1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P5R6-1", "protein_name": "Ribosomal protein eL22-like", "gene_name": "RPL22L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08708-1", "protein_name": "Small ribosomal subunit protein eS17", "gene_name": "RPS17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67812-1", "protein_name": "Signal peptidase complex catalytic subunit SEC11A", "gene_name": "SEC11A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46783-1", "protein_name": "Small ribosomal subunit protein eS10", "gene_name": "RPS10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62917-1", "protein_name": "Large ribosomal subunit protein uL2", "gene_name": "RPL8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25398-1", "protein_name": "Small ribosomal subunit protein eS12", "gene_name": "RPS12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46781-1", "protein_name": "Small ribosomal subunit protein uS4", "gene_name": "RPS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62424-1", "protein_name": "Large ribosomal subunit protein eL8", "gene_name": "RPL7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62701-1", "protein_name": "Small ribosomal subunit protein eS4, X isoform", "gene_name": "RPS4X", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63220-1", "protein_name": "Small ribosomal subunit protein eS21", "gene_name": "RPS21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TD47-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 2", "gene_name": "RPS4Y2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07020-1", "protein_name": "Large ribosomal subunit protein eL18", "gene_name": "RPL18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35268-1", "protein_name": "Large ribosomal subunit protein eL22", "gene_name": "RPL22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83881-1", "protein_name": "Large ribosomal subunit protein eL42", "gene_name": "RPL36A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61353-1", "protein_name": "Large ribosomal subunit protein eL27", "gene_name": "RPL27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNX3-1", "protein_name": "Ribosomal protein uL24-like", "gene_name": "RPL26L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02543-1", "protein_name": "Large ribosomal subunit protein eL20", "gene_name": "RPL18A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40429-1", "protein_name": "Large ribosomal subunit protein uL13", "gene_name": "RPL13A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63173-1", "protein_name": "Large ribosomal subunit protein eL38", "gene_name": "RPL38", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62910-1", "protein_name": "Large ribosomal subunit protein eL32", "gene_name": "RPL32", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39023-1", "protein_name": "Large ribosomal subunit protein uL3", "gene_name": "RPL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18077-1", "protein_name": "Large ribosomal subunit protein eL33", "gene_name": "RPL35A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61254-1", "protein_name": "Large ribosomal subunit protein uL24", "gene_name": "RPL26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84098-1", "protein_name": "Large ribosomal subunit protein eL19", "gene_name": "RPL19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62888-1", "protein_name": "Large ribosomal subunit protein eL30", "gene_name": "RPL30", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83731-1", "protein_name": "Large ribosomal subunit protein eL24", "gene_name": "RPL24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62899-1", "protein_name": "Large ribosomal subunit protein eL31", "gene_name": "RPL31", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62945-1", "protein_name": "Small ribosomal subunit protein eS32", "gene_name": "RPL41", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61927-1", "protein_name": "Large ribosomal subunit protein eL37", "gene_name": "RPL37", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42766-1", "protein_name": "Large ribosomal subunit protein uL29", "gene_name": "RPL35", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05387-1", "protein_name": "Large ribosomal subunit protein P2", "gene_name": "RPLP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92901-1", "protein_name": "Ribosomal protein uL3-like", "gene_name": "RPL3L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46778-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "RPL21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05386-1", "protein_name": "Large ribosomal subunit protein P1", "gene_name": "RPLP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49207-1", "protein_name": "Large ribosomal subunit protein eL34", "gene_name": "RPL34", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62891-1", "protein_name": "Large ribosomal subunit protein eL39", "gene_name": "RPL39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96L21-1", "protein_name": "Ribosomal protein uL16-like", "gene_name": "RPL10L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26373-1", "protein_name": "Large ribosomal subunit protein eL13", "gene_name": "RPL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60866-1", "protein_name": "Small ribosomal subunit protein uS10", "gene_name": "RPS20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969Q0-1", "protein_name": "Ribosomal protein eL42-like", "gene_name": "RPL36AL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61247-1", "protein_name": "Small ribosomal subunit protein eS1", "gene_name": "RPS3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62854-1", "protein_name": "Small ribosomal subunit protein eS26", "gene_name": "RPS26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62851-1", "protein_name": "Small ribosomal subunit protein eS25", "gene_name": "RPS25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08865-1", "protein_name": "Small ribosomal subunit protein uS2", "gene_name": "RPSA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62847-1", "protein_name": "Small ribosomal subunit protein eS24", "gene_name": "RPS24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62861-1", "protein_name": "Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein", "gene_name": "FAU", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62241-1", "protein_name": "Small ribosomal subunit protein eS8", "gene_name": "RPS8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39656-1", "protein_name": "Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit", "gene_name": "DDOST", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62277-1", "protein_name": "Small ribosomal subunit protein uS15", "gene_name": "RPS13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39019-1", "protein_name": "Small ribosomal subunit protein eS19", "gene_name": "RPS19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H9S3-1", "protein_name": "Protein transport protein Sec61 subunit alpha isoform 2", "gene_name": "SEC61A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62269-1", "protein_name": "Small ribosomal subunit protein uS13", "gene_name": "RPS18", "tax_name": "Human" }, { "uniprot_canonical_ac": "O76094-1", "protein_name": "Signal recognition particle subunit SRP72", "gene_name": "SRP72", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHB9-1", "protein_name": "Signal recognition particle subunit SRP68", "gene_name": "SRP68", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09132-1", "protein_name": "Signal recognition particle 19 kDa protein", "gene_name": "SRP19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04844-1", "protein_name": "Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2", "gene_name": "RPN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02878-1", "protein_name": "Large ribosomal subunit protein eL6", "gene_name": "RPL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62273-1", "protein_name": "Small ribosomal subunit protein uS14", "gene_name": "RPS29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04843-1", "protein_name": "Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1", "gene_name": "RPN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15629-1", "protein_name": "Translocating chain-associated membrane protein 1", "gene_name": "TRAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42677-1", "protein_name": "Small ribosomal subunit protein eS27", "gene_name": "RPS27", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60468-1", "protein_name": "Protein transport protein Sec61 subunit beta", "gene_name": "SEC61B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EH5-1", "protein_name": "Ribosomal protein eL39-like 2", "gene_name": "RPL39L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62263-1", "protein_name": "Small ribosomal subunit protein uS11", "gene_name": "RPS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61513-1", "protein_name": "Large ribosomal subunit protein eL43", "gene_name": "RPL37A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18124-1", "protein_name": "Large ribosomal subunit protein uL30", "gene_name": "RPL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNL2-1", "protein_name": "Translocon-associated protein subunit gamma", "gene_name": "SSR3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15880-1", "protein_name": "Small ribosomal subunit protein uS5", "gene_name": "RPS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62750-1", "protein_name": "Large ribosomal subunit protein uL23", "gene_name": "RPL23A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62280-1", "protein_name": "Small ribosomal subunit protein uS17", "gene_name": "RPS11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62249-1", "protein_name": "Small ribosomal subunit protein uS9", "gene_name": "RPS16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50914-1", "protein_name": "Large ribosomal subunit protein eL14", "gene_name": "RPL14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62906-1", "protein_name": "Large ribosomal subunit protein uL1", "gene_name": "RPL10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P43307-1", "protein_name": "Translocon-associated protein subunit alpha", "gene_name": "SSR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23396-1", "protein_name": "Small ribosomal subunit protein uS3", "gene_name": "RPS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49458-1", "protein_name": "Signal recognition particle 9 kDa protein", "gene_name": "SRP9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62841-1", "protein_name": "Small ribosomal subunit protein uS19", "gene_name": "RPS15", "tax_name": "Human" }, { "uniprot_canonical_ac": "C0HME6-1", "protein_name": "RPL36 alternative reading frame protein", "gene_name": "RPL36", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62829-1", "protein_name": "Large ribosomal subunit protein uL14", "gene_name": "RPL23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32969-1", "protein_name": "Large ribosomal subunit protein uL6", "gene_name": "RPL9P7; RPL9P8; RPL9P9; RPL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61619-1", "protein_name": "Protein transport protein Sec61 subunit alpha isoform 1", "gene_name": "SEC61A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30050-1", "protein_name": "Large ribosomal subunit protein uL11", "gene_name": "RPL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62266-1", "protein_name": "Small ribosomal subunit protein uS12", "gene_name": "RPS23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46777-1", "protein_name": "Large ribosomal subunit protein uL18", "gene_name": "RPL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62753-1", "protein_name": "Small ribosomal subunit protein eS6", "gene_name": "RPS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60059-1", "protein_name": "Protein transport protein Sec61 subunit gamma", "gene_name": "SEC61G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27635-1", "protein_name": "Large ribosomal subunit protein uL16", "gene_name": "RPL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62913-1", "protein_name": "Large ribosomal subunit protein uL5", "gene_name": "RPL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36578-1", "protein_name": "Large ribosomal subunit protein uL4", "gene_name": "RPL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08240-1", "protein_name": "Signal recognition particle receptor subunit alpha", "gene_name": "SRPRA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61011-1", "protein_name": "Signal recognition particle subunit SRP54", "gene_name": "SRP54", "tax_name": "Human" }, { "uniprot_canonical_ac": "P43308-1", "protein_name": "Translocon-associated protein subunit beta", "gene_name": "SSR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P37108-1", "protein_name": "Signal recognition particle 14 kDa protein", "gene_name": "SRP14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5M8-1", "protein_name": "Signal recognition particle receptor subunit beta", "gene_name": "SRPRB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51571-1", "protein_name": "Translocon-associated protein subunit delta", "gene_name": "SSR4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61009-1", "protein_name": "Signal peptidase complex subunit 3", "gene_name": "SPCS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6A9-1", "protein_name": "Signal peptidase complex subunit 1", "gene_name": "SPCS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05388-1", "protein_name": "Large ribosomal subunit protein uL10", "gene_name": "RPLP0", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46779-1", "protein_name": "Large ribosomal subunit protein eL28", "gene_name": "RPL28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62857-1", "protein_name": "Small ribosomal subunit protein eS28", "gene_name": "RPS28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61313-1", "protein_name": "Large ribosomal subunit protein eL15", "gene_name": "RPL15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62081-1", "protein_name": "Small ribosomal subunit protein eS7", "gene_name": "RPS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71UM5-1", "protein_name": "Ribosomal protein eS27-like", "gene_name": "RPS27L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BY50-1", "protein_name": "Signal peptidase complex catalytic subunit SEC11C", "gene_name": "SEC11C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15005-1", "protein_name": "Signal peptidase complex subunit 2", "gene_name": "SPCS2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P18621", "url": "https://www.uniprot.org/uniprotkb/P18621" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.11964406", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 113 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Identification of a human decapping complex associated with hUpf proteins in nonsense-mediated decay.", "journal": "Molecular and cellular biology", "date": "2002", "authors": "Lykke-Andersen J", "reference": { "type": "PubMed", "id": "12417715", "url": "https://pubmed.ncbi.nlm.nih.gov/12417715" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P18621-1", "protein_name": "Large ribosomal subunit protein uL22", "gene_name": "RPL17", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H1J1-1", "protein_name": "Regulator of nonsense transcripts 3A", "gene_name": "UPF3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46776-1", "protein_name": "Large ribosomal subunit protein uL15", "gene_name": "RPL27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46782-1", "protein_name": "Small ribosomal subunit protein uS7", "gene_name": "RPS5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47914-1", "protein_name": "Large ribosomal subunit protein eL29", "gene_name": "RPL29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62244-1", "protein_name": "Small ribosomal subunit protein uS8", "gene_name": "RPS15A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22090-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 1", "gene_name": "RPS4Y1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P5R6-1", "protein_name": "Ribosomal protein eL22-like", "gene_name": "RPL22L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08708-1", "protein_name": "Small ribosomal subunit protein eS17", "gene_name": "RPS17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46783-1", "protein_name": "Small ribosomal subunit protein eS10", "gene_name": "RPS10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62917-1", "protein_name": "Large ribosomal subunit protein uL2", "gene_name": "RPL8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25398-1", "protein_name": "Small ribosomal subunit protein eS12", "gene_name": "RPS12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46781-1", "protein_name": "Small ribosomal subunit protein uS4", "gene_name": "RPS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62424-1", "protein_name": "Large ribosomal subunit protein eL8", "gene_name": "RPL7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62701-1", "protein_name": "Small ribosomal subunit protein eS4, X isoform", "gene_name": "RPS4X", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63220-1", "protein_name": "Small ribosomal subunit protein eS21", "gene_name": "RPS21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TD47-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 2", "gene_name": "RPS4Y2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y333-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm2", "gene_name": "LSM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96F86-1", "protein_name": "Enhancer of mRNA-decapping protein 3", "gene_name": "EDC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11940-1", "protein_name": "Polyadenylate-binding protein 1", "gene_name": "PABPC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07020-1", "protein_name": "Large ribosomal subunit protein eL18", "gene_name": "RPL18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35268-1", "protein_name": "Large ribosomal subunit protein eL22", "gene_name": "RPL22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83881-1", "protein_name": "Large ribosomal subunit protein eL42", "gene_name": "RPL36A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61353-1", "protein_name": "Large ribosomal subunit protein eL27", "gene_name": "RPL27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNX3-1", "protein_name": "Ribosomal protein uL24-like", "gene_name": "RPL26L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02543-1", "protein_name": "Large ribosomal subunit protein eL20", "gene_name": "RPL18A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40429-1", "protein_name": "Large ribosomal subunit protein uL13", "gene_name": "RPL13A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63173-1", "protein_name": "Large ribosomal subunit protein eL38", "gene_name": "RPL38", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62910-1", "protein_name": "Large ribosomal subunit protein eL32", "gene_name": "RPL32", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39023-1", "protein_name": "Large ribosomal subunit protein uL3", "gene_name": "RPL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18077-1", "protein_name": "Large ribosomal subunit protein eL33", "gene_name": "RPL35A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61254-1", "protein_name": "Large ribosomal subunit protein uL24", "gene_name": "RPL26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84098-1", "protein_name": "Large ribosomal subunit protein eL19", "gene_name": "RPL19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62888-1", "protein_name": "Large ribosomal subunit protein eL30", "gene_name": "RPL30", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83731-1", "protein_name": "Large ribosomal subunit protein eL24", "gene_name": "RPL24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62899-1", "protein_name": "Large ribosomal subunit protein eL31", "gene_name": "RPL31", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62945-1", "protein_name": "Small ribosomal subunit protein eS32", "gene_name": "RPL41", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61927-1", "protein_name": "Large ribosomal subunit protein eL37", "gene_name": "RPL37", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42766-1", "protein_name": "Large ribosomal subunit protein uL29", "gene_name": "RPL35", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05387-1", "protein_name": "Large ribosomal subunit protein P2", "gene_name": "RPLP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92901-1", "protein_name": "Ribosomal protein uL3-like", "gene_name": "RPL3L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46778-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "RPL21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05386-1", "protein_name": "Large ribosomal subunit protein P1", "gene_name": "RPLP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49207-1", "protein_name": "Large ribosomal subunit protein eL34", "gene_name": "RPL34", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62891-1", "protein_name": "Large ribosomal subunit protein eL39", "gene_name": "RPL39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96L21-1", "protein_name": "Ribosomal protein uL16-like", "gene_name": "RPL10L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26373-1", "protein_name": "Large ribosomal subunit protein eL13", "gene_name": "RPL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86US8-1", "protein_name": "Telomerase-binding protein EST1A", "gene_name": "SMG6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYD1-1", "protein_name": "Eukaryotic peptide chain release factor GTP-binding subunit ERF3B", "gene_name": "GSPT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60866-1", "protein_name": "Small ribosomal subunit protein uS10", "gene_name": "RPS20", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62312-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm6", "gene_name": "LSM6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62310-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm3", "gene_name": "LSM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969Q0-1", "protein_name": "Ribosomal protein eL42-like", "gene_name": "RPL36AL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61247-1", "protein_name": "Small ribosomal subunit protein eS1", "gene_name": "RPS3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62854-1", "protein_name": "Small ribosomal subunit protein eS26", "gene_name": "RPS26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62851-1", "protein_name": "Small ribosomal subunit protein eS25", "gene_name": "RPS25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08865-1", "protein_name": "Small ribosomal subunit protein uS2", "gene_name": "RPSA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62847-1", "protein_name": "Small ribosomal subunit protein eS24", "gene_name": "RPS24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62861-1", "protein_name": "Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein", "gene_name": "FAU", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62241-1", "protein_name": "Small ribosomal subunit protein eS8", "gene_name": "RPS8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62277-1", "protein_name": "Small ribosomal subunit protein uS15", "gene_name": "RPS13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39019-1", "protein_name": "Small ribosomal subunit protein eS19", "gene_name": "RPS19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92540-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG7", "gene_name": "SMG7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPR3-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG5", "gene_name": "SMG5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62269-1", "protein_name": "Small ribosomal subunit protein uS13", "gene_name": "RPS18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02878-1", "protein_name": "Large ribosomal subunit protein eL6", "gene_name": "RPL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62273-1", "protein_name": "Small ribosomal subunit protein uS14", "gene_name": "RPS29", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8ND04-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG8", "gene_name": "SMG8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPI6-1", "protein_name": "mRNA-decapping enzyme 1A", "gene_name": "DCP1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42677-1", "protein_name": "Small ribosomal subunit protein eS27", "gene_name": "RPS27", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38919-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "EIF4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61326-1", "protein_name": "Protein mago nashi homolog", "gene_name": "MAGOH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EH5-1", "protein_name": "Ribosomal protein eL39-like 2", "gene_name": "RPL39L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15287-1", "protein_name": "RNA-binding protein with serine-rich domain 1", "gene_name": "RNPS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0W8-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG9", "gene_name": "SMG9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IZD4-1", "protein_name": "mRNA-decapping enzyme 1B", "gene_name": "DCP1B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UK45-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm7", "gene_name": "LSM7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62263-1", "protein_name": "Small ribosomal subunit protein uS11", "gene_name": "RPS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IU60-1", "protein_name": "m7GpppN-mRNA hydrolase", "gene_name": "DCP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4Y9-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm5", "gene_name": "LSM5", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15116-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm1", "gene_name": "LSM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61513-1", "protein_name": "Large ribosomal subunit protein eL43", "gene_name": "RPL37A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18124-1", "protein_name": "Large ribosomal subunit protein uL30", "gene_name": "RPL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZI7-1", "protein_name": "Regulator of nonsense transcripts 3B", "gene_name": "UPF3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15880-1", "protein_name": "Small ribosomal subunit protein uS5", "gene_name": "RPS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62750-1", "protein_name": "Large ribosomal subunit protein uL23", "gene_name": "RPL23A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62280-1", "protein_name": "Small ribosomal subunit protein uS17", "gene_name": "RPS11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62249-1", "protein_name": "Small ribosomal subunit protein uS9", "gene_name": "RPS16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50914-1", "protein_name": "Large ribosomal subunit protein eL14", "gene_name": "RPL14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62906-1", "protein_name": "Large ribosomal subunit protein uL1", "gene_name": "RPL10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23396-1", "protein_name": "Small ribosomal subunit protein uS3", "gene_name": "RPS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26196-1", "protein_name": "Probable ATP-dependent RNA helicase DDX6", "gene_name": "DDX6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63151-1", "protein_name": "Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform", "gene_name": "PPP2R2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A72-1", "protein_name": "Protein mago nashi homolog 2", "gene_name": "MAGOHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P2E9-1", "protein_name": "Enhancer of mRNA-decapping protein 4", "gene_name": "EDC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86TB9-1", "protein_name": "Protein PAT1 homolog 1", "gene_name": "PATL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62841-1", "protein_name": "Small ribosomal subunit protein uS19", "gene_name": "RPS15", "tax_name": "Human" }, { "uniprot_canonical_ac": "C0HME6-1", "protein_name": "RPL36 alternative reading frame protein", "gene_name": "RPL36", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62829-1", "protein_name": "Large ribosomal subunit protein uL14", "gene_name": "RPL23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32969-1", "protein_name": "Large ribosomal subunit protein uL6", "gene_name": "RPL9P7; RPL9P8; RPL9P9; RPL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4Z0-1", "protein_name": "U6 snRNA-associated Sm-like protein LSm4", "gene_name": "LSM4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30050-1", "protein_name": "Large ribosomal subunit protein uL11", "gene_name": "RPL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q04637-1", "protein_name": "Eukaryotic translation initiation factor 4 gamma 1", "gene_name": "EIF4G1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62266-1", "protein_name": "Small ribosomal subunit protein uS12", "gene_name": "RPS23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46777-1", "protein_name": "Large ribosomal subunit protein uL18", "gene_name": "RPL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96Q15-1", "protein_name": "Serine/threonine-protein kinase SMG1", "gene_name": "SMG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62753-1", "protein_name": "Small ribosomal subunit protein eS6", "gene_name": "RPS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27635-1", "protein_name": "Large ribosomal subunit protein uL16", "gene_name": "RPL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62913-1", "protein_name": "Large ribosomal subunit protein uL5", "gene_name": "RPL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36578-1", "protein_name": "Large ribosomal subunit protein uL4", "gene_name": "RPL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HAU5-1", "protein_name": "Regulator of nonsense transcripts 2", "gene_name": "UPF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5S9-1", "protein_name": "RNA-binding protein 8A", "gene_name": "RBM8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IZH2-1", "protein_name": "5'-3' exoribonuclease 1", "gene_name": "XRN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15234-1", "protein_name": "Protein CASC3", "gene_name": "CASC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05388-1", "protein_name": "Large ribosomal subunit protein uL10", "gene_name": "RPLP0", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46779-1", "protein_name": "Large ribosomal subunit protein eL28", "gene_name": "RPL28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62857-1", "protein_name": "Small ribosomal subunit protein eS28", "gene_name": "RPS28", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPJ4-1", "protein_name": "Proline-rich nuclear receptor coactivator 2", "gene_name": "PNRC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15170-1", "protein_name": "Eukaryotic peptide chain release factor GTP-binding subunit ERF3A", "gene_name": "GSPT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62495-1", "protein_name": "Eukaryotic peptide chain release factor subunit 1", "gene_name": "ETF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61313-1", "protein_name": "Large ribosomal subunit protein eL15", "gene_name": "RPL15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62081-1", "protein_name": "Small ribosomal subunit protein eS7", "gene_name": "RPS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71UM5-1", "protein_name": "Ribosomal protein eS27-like", "gene_name": "RPS27L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30153-1", "protein_name": "Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform", "gene_name": "PPP2R1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67775-1", "protein_name": "Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform", "gene_name": "PPP2CA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92900-1", "protein_name": "Regulator of nonsense transcripts 1", "gene_name": "UPF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P18621", "url": "https://www.uniprot.org/uniprotkb/P18621" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 20, "end_pos": 20, "sequence_org": "D", "sequence_mut": "A", "comment": "Lowers decapping activity.", "evidence": [ { "database": "UniProtKB", "id": "Q9NPI6", "url": "https://www.uniprot.org/uniprotkb/Q9NPI6" }, { "database": "PubMed", "id": "12417715", "url": "https://pubmed.ncbi.nlm.nih.gov/12417715" } ], "uniprot_canonical_ac": "Q9NPI6-1" }, { "start_pos": 59, "end_pos": 59, "sequence_org": "R", "sequence_mut": "A", "comment": "Lowers decapping activity.", "evidence": [ { "database": "UniProtKB", "id": "Q9NPI6", "url": "https://www.uniprot.org/uniprotkb/Q9NPI6" }, { "database": "PubMed", "id": "12417715", "url": "https://pubmed.ncbi.nlm.nih.gov/12417715" } ], "uniprot_canonical_ac": "Q9NPI6-1" }, { "start_pos": 148, "end_pos": 148, "sequence_org": "E", "sequence_mut": "Q", "comment": "Strongly reduced decapping activity.", "evidence": [ { "database": "UniProtKB", "id": "Q8IU60", "url": "https://www.uniprot.org/uniprotkb/Q8IU60" }, { "database": "PubMed", "id": "12417715", "url": "https://pubmed.ncbi.nlm.nih.gov/12417715" } ], "uniprot_canonical_ac": "Q8IU60-1" } ], "record_id": "pubmed.12417715", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 130 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Characterization of human Smg5/7a: a protein with similarities to Caenorhabditis elegans SMG5 and SMG7 that functions in the dephosphorylation of Upf1.", "journal": "RNA (New York, N.Y.)", "date": "2003", "authors": "Chiu SY, Serin G, Ohara O, Maquat LE", "reference": { "type": "PubMed", "id": "12554878", "url": "https://pubmed.ncbi.nlm.nih.gov/12554878" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P18621-1", "protein_name": "Large ribosomal subunit protein uL22", "gene_name": "RPL17", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H1J1-1", "protein_name": "Regulator of nonsense transcripts 3A", "gene_name": 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"uniprot_canonical_ac": "Q8TD47-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 2", "gene_name": "RPS4Y2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11940-1", "protein_name": "Polyadenylate-binding protein 1", "gene_name": "PABPC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07020-1", "protein_name": "Large ribosomal subunit protein eL18", "gene_name": "RPL18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35268-1", "protein_name": "Large ribosomal subunit protein eL22", "gene_name": "RPL22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83881-1", "protein_name": "Large ribosomal subunit protein eL42", "gene_name": "RPL36A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61353-1", "protein_name": "Large ribosomal subunit protein eL27", "gene_name": "RPL27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNX3-1", "protein_name": "Ribosomal protein uL24-like", "gene_name": "RPL26L1", "tax_name": "Human" }, { "uniprot_canonical_ac": 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"protein_name": "Large ribosomal subunit protein eL19", "gene_name": "RPL19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62888-1", "protein_name": "Large ribosomal subunit protein eL30", "gene_name": "RPL30", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83731-1", "protein_name": "Large ribosomal subunit protein eL24", "gene_name": "RPL24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62899-1", "protein_name": "Large ribosomal subunit protein eL31", "gene_name": "RPL31", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62945-1", "protein_name": "Small ribosomal subunit protein eS32", "gene_name": "RPL41", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61927-1", "protein_name": "Large ribosomal subunit protein eL37", "gene_name": "RPL37", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42766-1", "protein_name": "Large ribosomal subunit protein uL29", "gene_name": "RPL35", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05387-1", "protein_name": "Large ribosomal subunit protein P2", "gene_name": "RPLP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92901-1", "protein_name": "Ribosomal protein uL3-like", "gene_name": "RPL3L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46778-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "RPL21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05386-1", "protein_name": "Large ribosomal subunit protein P1", "gene_name": "RPLP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49207-1", "protein_name": "Large ribosomal subunit protein eL34", "gene_name": "RPL34", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62891-1", "protein_name": "Large ribosomal subunit protein eL39", "gene_name": "RPL39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96L21-1", "protein_name": "Ribosomal protein uL16-like", "gene_name": "RPL10L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26373-1", "protein_name": "Large ribosomal subunit protein eL13", "gene_name": "RPL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86US8-1", "protein_name": "Telomerase-binding protein EST1A", "gene_name": "SMG6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYD1-1", "protein_name": "Eukaryotic peptide chain release factor GTP-binding subunit ERF3B", "gene_name": "GSPT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60866-1", "protein_name": "Small ribosomal subunit protein uS10", "gene_name": "RPS20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969Q0-1", "protein_name": "Ribosomal protein eL42-like", "gene_name": "RPL36AL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61247-1", "protein_name": "Small ribosomal subunit protein eS1", "gene_name": "RPS3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62854-1", "protein_name": "Small ribosomal subunit protein eS26", "gene_name": "RPS26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62851-1", "protein_name": "Small ribosomal subunit protein eS25", "gene_name": "RPS25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08865-1", "protein_name": "Small ribosomal subunit protein uS2", "gene_name": "RPSA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62847-1", "protein_name": "Small ribosomal subunit protein eS24", "gene_name": "RPS24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62861-1", "protein_name": "Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein", "gene_name": "FAU", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62241-1", "protein_name": "Small ribosomal subunit protein eS8", "gene_name": "RPS8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62277-1", "protein_name": "Small ribosomal subunit protein uS15", "gene_name": "RPS13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39019-1", "protein_name": "Small ribosomal subunit protein eS19", "gene_name": "RPS19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92540-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG7", "gene_name": "SMG7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPR3-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG5", "gene_name": "SMG5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62269-1", "protein_name": "Small ribosomal subunit protein uS13", "gene_name": "RPS18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02878-1", "protein_name": "Large ribosomal subunit protein eL6", "gene_name": "RPL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62273-1", "protein_name": "Small ribosomal subunit protein uS14", "gene_name": "RPS29", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8ND04-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG8", "gene_name": "SMG8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPI6-1", "protein_name": "mRNA-decapping enzyme 1A", "gene_name": "DCP1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42677-1", "protein_name": "Small ribosomal subunit protein eS27", "gene_name": "RPS27", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38919-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "EIF4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61326-1", "protein_name": "Protein mago nashi homolog", "gene_name": "MAGOH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EH5-1", "protein_name": "Ribosomal protein eL39-like 2", "gene_name": "RPL39L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15287-1", "protein_name": "RNA-binding protein with serine-rich domain 1", "gene_name": "RNPS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0W8-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG9", "gene_name": "SMG9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62263-1", "protein_name": "Small ribosomal subunit protein uS11", "gene_name": "RPS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61513-1", "protein_name": "Large ribosomal subunit protein eL43", "gene_name": "RPL37A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18124-1", "protein_name": "Large ribosomal subunit protein uL30", "gene_name": "RPL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZI7-1", "protein_name": "Regulator of nonsense transcripts 3B", "gene_name": "UPF3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15880-1", "protein_name": "Small ribosomal subunit protein uS5", "gene_name": "RPS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62750-1", "protein_name": "Large ribosomal subunit protein uL23", "gene_name": "RPL23A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62280-1", "protein_name": "Small ribosomal subunit protein uS17", "gene_name": "RPS11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62249-1", "protein_name": "Small ribosomal subunit protein uS9", "gene_name": "RPS16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50914-1", "protein_name": "Large ribosomal subunit protein eL14", "gene_name": "RPL14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62906-1", "protein_name": "Large ribosomal subunit protein uL1", "gene_name": "RPL10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23396-1", "protein_name": "Small ribosomal subunit protein uS3", "gene_name": "RPS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63151-1", "protein_name": "Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform", "gene_name": "PPP2R2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A72-1", "protein_name": "Protein mago nashi homolog 2", "gene_name": "MAGOHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62841-1", "protein_name": "Small ribosomal subunit protein uS19", "gene_name": "RPS15", "tax_name": "Human" }, { "uniprot_canonical_ac": "C0HME6-1", "protein_name": "RPL36 alternative reading frame protein", "gene_name": "RPL36", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62829-1", "protein_name": "Large ribosomal subunit protein uL14", "gene_name": "RPL23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32969-1", "protein_name": "Large ribosomal subunit protein uL6", "gene_name": "RPL9P7; RPL9P8; RPL9P9; RPL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30050-1", "protein_name": "Large ribosomal subunit protein uL11", "gene_name": "RPL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q04637-1", "protein_name": "Eukaryotic translation initiation factor 4 gamma 1", "gene_name": "EIF4G1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62266-1", "protein_name": "Small ribosomal subunit protein uS12", "gene_name": "RPS23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46777-1", "protein_name": "Large ribosomal subunit protein uL18", "gene_name": "RPL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96Q15-1", "protein_name": "Serine/threonine-protein kinase SMG1", "gene_name": "SMG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62753-1", "protein_name": "Small ribosomal subunit protein eS6", "gene_name": "RPS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27635-1", "protein_name": "Large ribosomal subunit protein uL16", "gene_name": "RPL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62913-1", "protein_name": "Large ribosomal subunit protein uL5", "gene_name": "RPL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36578-1", "protein_name": "Large ribosomal subunit protein uL4", "gene_name": "RPL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HAU5-1", "protein_name": "Regulator of nonsense transcripts 2", "gene_name": "UPF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5S9-1", "protein_name": "RNA-binding protein 8A", "gene_name": "RBM8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15234-1", "protein_name": "Protein CASC3", "gene_name": "CASC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05388-1", "protein_name": "Large ribosomal subunit protein uL10", "gene_name": "RPLP0", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46779-1", "protein_name": "Large ribosomal subunit protein eL28", "gene_name": "RPL28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62857-1", "protein_name": "Small ribosomal subunit protein eS28", "gene_name": "RPS28", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPJ4-1", "protein_name": "Proline-rich nuclear receptor coactivator 2", "gene_name": "PNRC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15170-1", "protein_name": "Eukaryotic peptide chain release factor GTP-binding subunit ERF3A", "gene_name": "GSPT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62495-1", "protein_name": "Eukaryotic peptide chain release factor subunit 1", "gene_name": "ETF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61313-1", "protein_name": "Large ribosomal subunit protein eL15", "gene_name": "RPL15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62081-1", "protein_name": "Small ribosomal subunit protein eS7", "gene_name": "RPS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71UM5-1", "protein_name": "Ribosomal protein eS27-like", "gene_name": "RPS27L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30153-1", "protein_name": "Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform", "gene_name": "PPP2R1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67775-1", "protein_name": "Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform", "gene_name": "PPP2CA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92900-1", "protein_name": "Regulator of nonsense transcripts 1", "gene_name": "UPF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P18621", "url": "https://www.uniprot.org/uniprotkb/P18621" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.12554878", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 116 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { 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subunit protein uL13", "gene_name": "RPL13A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63173-1", "protein_name": "Large ribosomal subunit protein eL38", "gene_name": "RPL38", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62910-1", "protein_name": "Large ribosomal subunit protein eL32", "gene_name": "RPL32", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39023-1", "protein_name": "Large ribosomal subunit protein uL3", "gene_name": "RPL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18077-1", "protein_name": "Large ribosomal subunit protein eL33", "gene_name": "RPL35A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61254-1", "protein_name": "Large ribosomal subunit protein uL24", "gene_name": "RPL26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84098-1", "protein_name": "Large ribosomal subunit protein eL19", "gene_name": "RPL19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62888-1", "protein_name": "Large ribosomal subunit protein eL30", 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mago nashi homolog", "gene_name": "MAGOH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EH5-1", "protein_name": "Ribosomal protein eL39-like 2", "gene_name": "RPL39L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15287-1", "protein_name": "RNA-binding protein with serine-rich domain 1", "gene_name": "RNPS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0W8-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG9", "gene_name": "SMG9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62263-1", "protein_name": "Small ribosomal subunit protein uS11", "gene_name": "RPS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61513-1", "protein_name": "Large ribosomal subunit protein eL43", "gene_name": "RPL37A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18124-1", "protein_name": "Large ribosomal subunit protein uL30", "gene_name": "RPL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZI7-1", "protein_name": "Regulator of nonsense transcripts 3B", 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"tax_name": "Human" }, { "uniprot_canonical_ac": "P23396-1", "protein_name": "Small ribosomal subunit protein uS3", "gene_name": "RPS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63151-1", "protein_name": "Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform", "gene_name": "PPP2R2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A72-1", "protein_name": "Protein mago nashi homolog 2", "gene_name": "MAGOHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62841-1", "protein_name": "Small ribosomal subunit protein uS19", "gene_name": "RPS15", "tax_name": "Human" }, { "uniprot_canonical_ac": "C0HME6-1", "protein_name": "RPL36 alternative reading frame protein", "gene_name": "RPL36", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62829-1", "protein_name": "Large ribosomal subunit protein uL14", "gene_name": "RPL23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32969-1", "protein_name": "Large ribosomal subunit protein uL6", "gene_name": "RPL9P7; RPL9P8; RPL9P9; RPL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30050-1", "protein_name": "Large ribosomal subunit protein uL11", "gene_name": "RPL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q04637-1", "protein_name": "Eukaryotic translation initiation factor 4 gamma 1", "gene_name": "EIF4G1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62266-1", "protein_name": "Small ribosomal subunit protein uS12", "gene_name": "RPS23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46777-1", "protein_name": "Large ribosomal subunit protein uL18", "gene_name": "RPL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96Q15-1", "protein_name": "Serine/threonine-protein kinase SMG1", "gene_name": "SMG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62753-1", "protein_name": "Small ribosomal subunit protein eS6", "gene_name": "RPS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27635-1", "protein_name": "Large ribosomal subunit protein uL16", "gene_name": "RPL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62913-1", "protein_name": "Large ribosomal subunit protein uL5", "gene_name": "RPL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36578-1", "protein_name": "Large ribosomal subunit protein uL4", "gene_name": "RPL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HAU5-1", "protein_name": "Regulator of nonsense transcripts 2", "gene_name": "UPF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5S9-1", "protein_name": "RNA-binding protein 8A", "gene_name": "RBM8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15234-1", "protein_name": "Protein CASC3", "gene_name": "CASC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05388-1", "protein_name": "Large ribosomal subunit protein uL10", "gene_name": "RPLP0", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46779-1", "protein_name": "Large ribosomal subunit protein eL28", "gene_name": "RPL28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62857-1", "protein_name": "Small ribosomal subunit protein eS28", "gene_name": "RPS28", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPJ4-1", "protein_name": "Proline-rich nuclear receptor coactivator 2", "gene_name": "PNRC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15170-1", "protein_name": "Eukaryotic peptide chain release factor GTP-binding subunit ERF3A", "gene_name": "GSPT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62495-1", "protein_name": "Eukaryotic peptide chain release factor subunit 1", "gene_name": 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"tax_name": "Human" }, { "uniprot_canonical_ac": "P23396-1", "protein_name": "Small ribosomal subunit protein uS3", "gene_name": "RPS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63151-1", "protein_name": "Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform", "gene_name": "PPP2R2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A72-1", "protein_name": "Protein mago nashi homolog 2", "gene_name": "MAGOHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62841-1", "protein_name": "Small ribosomal subunit protein uS19", "gene_name": "RPS15", "tax_name": "Human" }, { "uniprot_canonical_ac": "C0HME6-1", "protein_name": "RPL36 alternative reading frame protein", "gene_name": "RPL36", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62829-1", "protein_name": "Large ribosomal subunit protein uL14", "gene_name": "RPL23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32969-1", "protein_name": "Large ribosomal subunit protein uL6", "gene_name": "RPL9P7; RPL9P8; RPL9P9; RPL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30050-1", "protein_name": "Large ribosomal subunit protein uL11", "gene_name": "RPL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q04637-1", "protein_name": "Eukaryotic translation initiation factor 4 gamma 1", "gene_name": "EIF4G1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62266-1", "protein_name": "Small ribosomal subunit protein uS12", "gene_name": "RPS23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46777-1", "protein_name": "Large ribosomal subunit protein uL18", "gene_name": "RPL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96Q15-1", "protein_name": "Serine/threonine-protein kinase SMG1", "gene_name": "SMG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62753-1", "protein_name": "Small ribosomal subunit protein eS6", "gene_name": "RPS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27635-1", "protein_name": "Large ribosomal subunit protein uL16", "gene_name": "RPL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62913-1", "protein_name": "Large ribosomal subunit protein uL5", "gene_name": "RPL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36578-1", "protein_name": "Large ribosomal subunit protein uL4", "gene_name": "RPL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HAU5-1", "protein_name": "Regulator of nonsense transcripts 2", "gene_name": "UPF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5S9-1", "protein_name": "RNA-binding protein 8A", "gene_name": "RBM8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15234-1", "protein_name": "Protein CASC3", "gene_name": "CASC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05388-1", "protein_name": "Large ribosomal subunit protein uL10", "gene_name": "RPLP0", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46779-1", "protein_name": "Large ribosomal subunit protein eL28", "gene_name": "RPL28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62857-1", "protein_name": "Small ribosomal subunit protein eS28", "gene_name": "RPS28", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPJ4-1", "protein_name": "Proline-rich nuclear receptor coactivator 2", "gene_name": "PNRC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15170-1", "protein_name": "Eukaryotic peptide chain release factor GTP-binding subunit ERF3A", "gene_name": "GSPT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62495-1", "protein_name": "Eukaryotic peptide chain release factor subunit 1", "gene_name": "ETF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61313-1", "protein_name": "Large ribosomal subunit protein eL15", "gene_name": "RPL15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62081-1", "protein_name": "Small ribosomal subunit protein eS7", "gene_name": "RPS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71UM5-1", "protein_name": "Ribosomal protein eS27-like", "gene_name": "RPS27L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30153-1", "protein_name": "Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform", "gene_name": "PPP2R1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67775-1", "protein_name": "Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform", "gene_name": "PPP2CA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92900-1", "protein_name": "Regulator of nonsense transcripts 1", "gene_name": "UPF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P18621", "url": "https://www.uniprot.org/uniprotkb/P18621" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.12832468", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 116 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Structure, function and evolution of the signal recognition particle.", "journal": "The EMBO journal", "date": "2003", "authors": "Nagai K, Oubridge C, Kuglstatter A, Menichelli E, Isel C, Jovine L", "reference": { "type": "PubMed", "id": "12853463", "url": "https://pubmed.ncbi.nlm.nih.gov/12853463" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P18621-1", "protein_name": "Large ribosomal subunit protein uL22", "gene_name": "RPL17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46776-1", "protein_name": "Large ribosomal subunit protein uL15", "gene_name": "RPL27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46782-1", "protein_name": "Small ribosomal subunit protein uS7", "gene_name": "RPS5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47914-1", "protein_name": "Large ribosomal subunit protein eL29", "gene_name": "RPL29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62244-1", "protein_name": "Small ribosomal subunit protein uS8", "gene_name": "RPS15A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22090-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 1", "gene_name": "RPS4Y1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P5R6-1", "protein_name": "Ribosomal protein eL22-like", "gene_name": "RPL22L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08708-1", "protein_name": "Small ribosomal subunit protein eS17", "gene_name": "RPS17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67812-1", "protein_name": "Signal peptidase complex catalytic subunit SEC11A", "gene_name": "SEC11A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46783-1", "protein_name": "Small ribosomal subunit protein eS10", "gene_name": "RPS10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62917-1", "protein_name": "Large ribosomal subunit protein uL2", "gene_name": "RPL8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25398-1", "protein_name": "Small ribosomal subunit protein eS12", "gene_name": "RPS12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46781-1", "protein_name": "Small ribosomal subunit protein uS4", "gene_name": "RPS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62424-1", "protein_name": "Large ribosomal subunit protein eL8", "gene_name": "RPL7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62701-1", "protein_name": "Small ribosomal subunit protein eS4, X isoform", "gene_name": "RPS4X", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63220-1", "protein_name": "Small ribosomal subunit protein eS21", "gene_name": "RPS21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TD47-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 2", "gene_name": "RPS4Y2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07020-1", "protein_name": "Large ribosomal subunit protein eL18", "gene_name": "RPL18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35268-1", "protein_name": "Large ribosomal subunit protein eL22", "gene_name": "RPL22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83881-1", "protein_name": "Large ribosomal subunit protein eL42", "gene_name": "RPL36A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61353-1", "protein_name": "Large ribosomal subunit protein eL27", "gene_name": "RPL27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNX3-1", "protein_name": "Ribosomal protein uL24-like", "gene_name": "RPL26L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02543-1", "protein_name": "Large ribosomal subunit protein eL20", "gene_name": "RPL18A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40429-1", "protein_name": "Large ribosomal subunit protein uL13", "gene_name": "RPL13A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63173-1", "protein_name": "Large ribosomal subunit protein eL38", "gene_name": "RPL38", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62910-1", "protein_name": "Large ribosomal subunit protein eL32", "gene_name": "RPL32", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39023-1", "protein_name": "Large ribosomal subunit protein uL3", "gene_name": "RPL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18077-1", "protein_name": "Large ribosomal subunit protein eL33", "gene_name": "RPL35A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61254-1", "protein_name": "Large ribosomal subunit protein uL24", "gene_name": "RPL26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84098-1", "protein_name": "Large ribosomal subunit protein eL19", "gene_name": "RPL19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62888-1", "protein_name": "Large ribosomal subunit protein eL30", "gene_name": "RPL30", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83731-1", "protein_name": "Large ribosomal subunit protein eL24", "gene_name": "RPL24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62899-1", "protein_name": "Large ribosomal subunit protein eL31", "gene_name": "RPL31", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62945-1", "protein_name": "Small ribosomal subunit protein eS32", "gene_name": "RPL41", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61927-1", "protein_name": "Large ribosomal subunit protein eL37", "gene_name": "RPL37", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42766-1", "protein_name": "Large ribosomal subunit protein uL29", "gene_name": "RPL35", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05387-1", "protein_name": "Large ribosomal subunit protein P2", "gene_name": "RPLP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92901-1", "protein_name": "Ribosomal protein uL3-like", "gene_name": "RPL3L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46778-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "RPL21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05386-1", "protein_name": "Large ribosomal subunit protein P1", "gene_name": "RPLP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49207-1", "protein_name": "Large ribosomal subunit protein eL34", "gene_name": "RPL34", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62891-1", "protein_name": "Large ribosomal subunit protein eL39", "gene_name": "RPL39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96L21-1", "protein_name": "Ribosomal protein uL16-like", "gene_name": "RPL10L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26373-1", "protein_name": "Large ribosomal subunit protein eL13", "gene_name": "RPL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60866-1", "protein_name": "Small ribosomal subunit protein uS10", "gene_name": "RPS20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969Q0-1", "protein_name": "Ribosomal protein eL42-like", "gene_name": "RPL36AL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61247-1", "protein_name": "Small ribosomal subunit protein eS1", "gene_name": "RPS3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62854-1", "protein_name": "Small ribosomal subunit protein eS26", "gene_name": "RPS26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62851-1", "protein_name": "Small ribosomal subunit protein eS25", "gene_name": "RPS25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08865-1", "protein_name": "Small ribosomal subunit protein uS2", "gene_name": "RPSA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62847-1", "protein_name": "Small ribosomal subunit protein eS24", "gene_name": "RPS24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62861-1", "protein_name": "Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein", "gene_name": "FAU", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62241-1", "protein_name": "Small ribosomal subunit protein eS8", "gene_name": "RPS8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39656-1", "protein_name": "Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit", "gene_name": "DDOST", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62277-1", "protein_name": "Small ribosomal subunit protein uS15", "gene_name": "RPS13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39019-1", "protein_name": "Small ribosomal subunit protein eS19", "gene_name": "RPS19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H9S3-1", "protein_name": "Protein transport protein Sec61 subunit alpha isoform 2", "gene_name": "SEC61A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62269-1", "protein_name": "Small ribosomal subunit protein uS13", "gene_name": "RPS18", "tax_name": "Human" }, { "uniprot_canonical_ac": "O76094-1", "protein_name": "Signal recognition particle subunit SRP72", "gene_name": "SRP72", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHB9-1", "protein_name": "Signal recognition particle subunit SRP68", "gene_name": "SRP68", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09132-1", "protein_name": "Signal recognition particle 19 kDa protein", "gene_name": "SRP19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04844-1", "protein_name": "Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2", "gene_name": "RPN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02878-1", "protein_name": "Large ribosomal subunit protein eL6", "gene_name": "RPL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62273-1", "protein_name": "Small ribosomal subunit protein uS14", "gene_name": "RPS29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04843-1", "protein_name": "Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1", "gene_name": "RPN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15629-1", "protein_name": "Translocating chain-associated membrane protein 1", "gene_name": "TRAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42677-1", "protein_name": "Small ribosomal subunit protein eS27", "gene_name": "RPS27", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60468-1", "protein_name": "Protein transport protein Sec61 subunit beta", "gene_name": "SEC61B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EH5-1", "protein_name": "Ribosomal protein eL39-like 2", "gene_name": "RPL39L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62263-1", "protein_name": "Small ribosomal subunit protein uS11", "gene_name": "RPS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61513-1", "protein_name": "Large ribosomal subunit protein eL43", "gene_name": "RPL37A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18124-1", "protein_name": "Large ribosomal subunit protein uL30", "gene_name": "RPL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNL2-1", "protein_name": "Translocon-associated protein subunit gamma", "gene_name": "SSR3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15880-1", "protein_name": "Small ribosomal subunit protein uS5", "gene_name": "RPS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62750-1", "protein_name": "Large ribosomal subunit protein uL23", "gene_name": "RPL23A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62280-1", "protein_name": "Small ribosomal subunit protein uS17", "gene_name": "RPS11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62249-1", "protein_name": "Small ribosomal subunit protein uS9", "gene_name": "RPS16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50914-1", "protein_name": "Large ribosomal subunit protein eL14", "gene_name": "RPL14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62906-1", "protein_name": "Large ribosomal subunit protein uL1", "gene_name": "RPL10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P43307-1", "protein_name": "Translocon-associated protein subunit alpha", "gene_name": "SSR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23396-1", "protein_name": "Small ribosomal subunit protein uS3", "gene_name": "RPS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49458-1", "protein_name": "Signal recognition particle 9 kDa protein", "gene_name": "SRP9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62841-1", "protein_name": "Small ribosomal subunit protein uS19", "gene_name": "RPS15", "tax_name": "Human" }, { "uniprot_canonical_ac": "C0HME6-1", "protein_name": "RPL36 alternative reading frame protein", "gene_name": "RPL36", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62829-1", "protein_name": "Large ribosomal subunit protein uL14", "gene_name": "RPL23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32969-1", "protein_name": "Large ribosomal subunit protein uL6", "gene_name": "RPL9P7; RPL9P8; RPL9P9; RPL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61619-1", "protein_name": "Protein transport protein Sec61 subunit alpha isoform 1", "gene_name": "SEC61A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30050-1", "protein_name": "Large ribosomal subunit protein uL11", "gene_name": "RPL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62266-1", "protein_name": "Small ribosomal subunit protein uS12", "gene_name": "RPS23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46777-1", "protein_name": "Large ribosomal subunit protein uL18", "gene_name": "RPL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62753-1", "protein_name": "Small ribosomal subunit protein eS6", "gene_name": "RPS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60059-1", "protein_name": "Protein transport protein Sec61 subunit gamma", "gene_name": "SEC61G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27635-1", "protein_name": "Large ribosomal subunit protein uL16", "gene_name": "RPL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62913-1", "protein_name": "Large ribosomal subunit protein uL5", "gene_name": "RPL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36578-1", "protein_name": "Large ribosomal subunit protein uL4", "gene_name": "RPL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08240-1", "protein_name": "Signal recognition particle receptor subunit alpha", "gene_name": "SRPRA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61011-1", "protein_name": "Signal recognition particle subunit SRP54", "gene_name": "SRP54", "tax_name": "Human" }, { "uniprot_canonical_ac": "P43308-1", "protein_name": "Translocon-associated protein subunit beta", "gene_name": "SSR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P37108-1", "protein_name": "Signal recognition particle 14 kDa protein", "gene_name": "SRP14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5M8-1", "protein_name": "Signal recognition particle receptor subunit beta", "gene_name": "SRPRB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51571-1", "protein_name": "Translocon-associated protein subunit delta", "gene_name": "SSR4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61009-1", "protein_name": "Signal peptidase complex subunit 3", "gene_name": "SPCS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6A9-1", "protein_name": "Signal peptidase complex subunit 1", "gene_name": "SPCS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05388-1", "protein_name": "Large ribosomal subunit protein uL10", "gene_name": "RPLP0", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46779-1", "protein_name": "Large ribosomal subunit protein eL28", "gene_name": "RPL28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62857-1", "protein_name": "Small ribosomal subunit protein eS28", "gene_name": "RPS28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61313-1", "protein_name": "Large ribosomal subunit protein eL15", "gene_name": "RPL15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62081-1", "protein_name": "Small ribosomal subunit protein eS7", "gene_name": "RPS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71UM5-1", "protein_name": "Ribosomal protein eS27-like", "gene_name": "RPS27L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BY50-1", "protein_name": "Signal peptidase complex catalytic subunit SEC11C", "gene_name": "SEC11C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15005-1", "protein_name": "Signal peptidase complex subunit 2", "gene_name": "SPCS2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P18621", "url": "https://www.uniprot.org/uniprotkb/P18621" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.12853463", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 113 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", 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"o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Characterization and analysis of posttranslational modifications of the human large cytoplasmic ribosomal subunit proteins by mass spectrometry and Edman sequencing.", "journal": "Journal of protein chemistry", "date": "2003", "authors": "Odintsova TI, Muller EC, Ivanov AV, Egorov TA, Bienert R, Vladimirov SN, Kostka S, Otto A, Wittmann-Liebold B, Karpova GG", "reference": { "type": "PubMed", "id": "12962325", "url": "https://pubmed.ncbi.nlm.nih.gov/12962325" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P18621-1", "protein_name": "Large ribosomal subunit protein uL22", "gene_name": "RPL17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47914-1", "protein_name": "Large ribosomal subunit protein eL29", "gene_name": "RPL29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62917-1", "protein_name": "Large ribosomal subunit protein uL2", "gene_name": "RPL8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07020-1", "protein_name": "Large ribosomal subunit protein eL18", "gene_name": "RPL18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61353-1", "protein_name": "Large ribosomal subunit protein eL27", "gene_name": "RPL27", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40429-1", "protein_name": "Large ribosomal subunit protein uL13", "gene_name": "RPL13A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39023-1", "protein_name": "Large ribosomal subunit protein uL3", "gene_name": "RPL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42766-1", "protein_name": "Large ribosomal subunit protein uL29", "gene_name": "RPL35", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46778-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "RPL21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49207-1", "protein_name": "Large ribosomal subunit protein eL34", "gene_name": "RPL34", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02878-1", "protein_name": "Large ribosomal subunit protein eL6", "gene_name": "RPL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18124-1", "protein_name": "Large ribosomal subunit protein uL30", "gene_name": "RPL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50914-1", "protein_name": "Large ribosomal subunit protein eL14", "gene_name": "RPL14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62906-1", "protein_name": "Large ribosomal subunit protein uL1", "gene_name": "RPL10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "C0HME6-1", "protein_name": "RPL36 alternative reading frame protein", "gene_name": "RPL36", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46777-1", "protein_name": "Large ribosomal subunit protein uL18", "gene_name": "RPL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27635-1", "protein_name": "Large ribosomal subunit protein uL16", "gene_name": "RPL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62913-1", "protein_name": "Large ribosomal subunit protein uL5", "gene_name": "RPL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46779-1", "protein_name": "Large ribosomal subunit protein eL28", "gene_name": "RPL28", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P18621", "url": "https://www.uniprot.org/uniprotkb/P18621" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 77, "end_pos": 77, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by ZIPK/DAPK3", "evidence": [ { "database": "UniProtKB", "id": "P40429", "url": "https://www.uniprot.org/uniprotkb/P40429" }, { "database": "PRO", "id": "P40429", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=P40429" }, { "database": "iPTMnet", "id": "P40429", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P40429" }, { "database": "PubMed", "id": "12962325", "url": "https://pubmed.ncbi.nlm.nih.gov/12962325" }, { "database": "PubMed", "id": "18995835", "url": "https://pubmed.ncbi.nlm.nih.gov/18995835" } ], "site_lbl": "Ser77", "uniprot_canonical_ac": "P40429-1" } ], "record_id": "pubmed.12962325", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 19 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Calcium ionophore A23187 induces expression of the growth arrest and DNA damage inducible CCAAT/enhancer-binding protein (C/EBP)-related gene, gadd153. Ca2+ increases transcriptional activity and mRNA stability.", "journal": "The Journal of biological chemistry", "date": "1992", "authors": "Bartlett JD, Luethy JD, Carlson SG, Sollott SJ, Holbrook NJ", "reference": { "type": "PubMed", "id": "1400365", "url": "https://pubmed.ncbi.nlm.nih.gov/1400365" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P18621-1", "protein_name": "Large ribosomal subunit protein uL22", "gene_name": "RPL17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46776-1", "protein_name": "Large ribosomal subunit protein uL15", "gene_name": "RPL27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46782-1", "protein_name": "Small ribosomal subunit protein uS7", "gene_name": "RPS5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47914-1", "protein_name": "Large ribosomal subunit protein eL29", "gene_name": "RPL29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62244-1", "protein_name": "Small ribosomal subunit protein uS8", "gene_name": "RPS15A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22090-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 1", "gene_name": "RPS4Y1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P5R6-1", "protein_name": "Ribosomal protein eL22-like", "gene_name": "RPL22L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08708-1", "protein_name": "Small ribosomal subunit protein eS17", "gene_name": "RPS17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46783-1", "protein_name": "Small ribosomal subunit protein eS10", "gene_name": "RPS10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62917-1", "protein_name": "Large ribosomal subunit protein uL2", "gene_name": "RPL8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25398-1", "protein_name": "Small ribosomal subunit protein eS12", "gene_name": "RPS12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46781-1", "protein_name": "Small ribosomal subunit protein uS4", "gene_name": "RPS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62424-1", "protein_name": "Large ribosomal subunit protein eL8", "gene_name": "RPL7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62701-1", "protein_name": "Small ribosomal subunit protein eS4, X isoform", "gene_name": "RPS4X", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63220-1", "protein_name": "Small ribosomal subunit protein eS21", "gene_name": "RPS21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TD47-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 2", "gene_name": "RPS4Y2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96RU7-1", "protein_name": "Tribbles homolog 3", "gene_name": "TRIB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08243-1", "protein_name": "Asparagine synthetase [glutamine-hydrolyzing]", "gene_name": "ASNS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53567-1", "protein_name": "CCAAT/enhancer-binding protein gamma", "gene_name": "CEBPG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18847-1", "protein_name": "Cyclic AMP-dependent transcription factor ATF-3", "gene_name": "ATF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35638-1", "protein_name": "DNA damage-inducible transcript 3 protein", "gene_name": "DDIT3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15336-1", "protein_name": "Cyclic AMP-dependent transcription factor ATF-2", "gene_name": "ATF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18848-1", "protein_name": "Cyclic AMP-dependent transcription factor ATF-4", "gene_name": "ATF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07020-1", "protein_name": "Large ribosomal subunit protein eL18", "gene_name": "RPL18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35268-1", "protein_name": "Large ribosomal subunit protein eL22", "gene_name": "RPL22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83881-1", "protein_name": "Large ribosomal subunit protein eL42", "gene_name": "RPL36A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61353-1", "protein_name": "Large ribosomal subunit protein eL27", "gene_name": "RPL27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNX3-1", "protein_name": "Ribosomal protein uL24-like", "gene_name": "RPL26L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02543-1", "protein_name": "Large ribosomal subunit protein eL20", "gene_name": "RPL18A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40429-1", "protein_name": "Large ribosomal subunit protein uL13", "gene_name": "RPL13A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63173-1", "protein_name": "Large ribosomal subunit protein eL38", "gene_name": "RPL38", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62910-1", "protein_name": "Large ribosomal subunit protein eL32", "gene_name": "RPL32", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39023-1", "protein_name": "Large ribosomal subunit protein uL3", "gene_name": "RPL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18077-1", "protein_name": "Large ribosomal subunit protein eL33", "gene_name": "RPL35A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61254-1", "protein_name": "Large ribosomal subunit protein uL24", "gene_name": "RPL26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84098-1", "protein_name": "Large ribosomal subunit protein eL19", "gene_name": "RPL19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62888-1", "protein_name": "Large ribosomal subunit protein eL30", "gene_name": "RPL30", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83731-1", "protein_name": "Large ribosomal subunit protein eL24", "gene_name": "RPL24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62899-1", "protein_name": "Large ribosomal subunit protein eL31", "gene_name": "RPL31", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62945-1", "protein_name": "Small ribosomal subunit protein eS32", "gene_name": "RPL41", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61927-1", "protein_name": "Large ribosomal subunit protein eL37", "gene_name": "RPL37", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42766-1", "protein_name": "Large ribosomal subunit protein uL29", "gene_name": "RPL35", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05387-1", "protein_name": "Large ribosomal subunit protein P2", "gene_name": "RPLP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92901-1", "protein_name": "Ribosomal protein uL3-like", "gene_name": "RPL3L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46778-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "RPL21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05386-1", "protein_name": "Large ribosomal subunit protein P1", "gene_name": "RPLP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49207-1", "protein_name": "Large ribosomal subunit protein eL34", "gene_name": "RPL34", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62891-1", "protein_name": "Large ribosomal subunit protein eL39", "gene_name": "RPL39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96L21-1", "protein_name": "Ribosomal protein uL16-like", "gene_name": "RPL10L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26373-1", "protein_name": "Large ribosomal subunit protein eL13", "gene_name": "RPL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60866-1", "protein_name": "Small ribosomal subunit protein uS10", "gene_name": "RPS20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969Q0-1", "protein_name": "Ribosomal protein eL42-like", "gene_name": "RPL36AL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61247-1", "protein_name": "Small ribosomal subunit protein eS1", "gene_name": "RPS3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P2X3-1", "protein_name": "Protein IMPACT", "gene_name": "IMPACT", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62854-1", "protein_name": "Small ribosomal subunit protein eS26", "gene_name": "RPS26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62851-1", "protein_name": "Small ribosomal subunit protein eS25", "gene_name": "RPS25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08865-1", "protein_name": "Small ribosomal subunit protein uS2", "gene_name": "RPSA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62847-1", "protein_name": "Small ribosomal subunit protein eS24", "gene_name": "RPS24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62861-1", "protein_name": "Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein", "gene_name": "FAU", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62241-1", "protein_name": "Small ribosomal subunit protein eS8", "gene_name": "RPS8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62277-1", "protein_name": "Small ribosomal subunit protein uS15", "gene_name": "RPS13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39019-1", "protein_name": "Small ribosomal subunit protein eS19", "gene_name": "RPS19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62269-1", "protein_name": "Small ribosomal subunit protein uS13", "gene_name": "RPS18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02878-1", "protein_name": "Large ribosomal subunit protein eL6", "gene_name": "RPL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62273-1", "protein_name": "Small ribosomal subunit protein uS14", "gene_name": "RPS29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17676-1", "protein_name": "CCAAT/enhancer-binding protein beta", "gene_name": "CEBPB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20042-1", "protein_name": "Eukaryotic translation initiation factor 2 subunit 2", "gene_name": "EIF2S2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42677-1", "protein_name": "Small ribosomal subunit protein eS27", "gene_name": "RPS27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EH5-1", "protein_name": "Ribosomal protein eL39-like 2", "gene_name": "RPL39L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62263-1", "protein_name": "Small ribosomal subunit protein uS11", "gene_name": "RPS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61513-1", "protein_name": "Large ribosomal subunit protein eL43", "gene_name": "RPL37A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18124-1", "protein_name": "Large ribosomal subunit protein uL30", "gene_name": "RPL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15880-1", "protein_name": "Small ribosomal subunit protein uS5", "gene_name": "RPS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62750-1", "protein_name": "Large ribosomal subunit protein uL23", "gene_name": "RPL23A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62280-1", "protein_name": "Small ribosomal subunit protein uS17", "gene_name": "RPS11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62249-1", "protein_name": "Small ribosomal subunit protein uS9", "gene_name": "RPS16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50914-1", "protein_name": "Large ribosomal subunit protein eL14", "gene_name": "RPL14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62906-1", "protein_name": "Large ribosomal subunit protein uL1", "gene_name": "RPL10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23396-1", "protein_name": "Small ribosomal subunit protein uS3", "gene_name": "RPS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05198-1", "protein_name": "Eukaryotic translation initiation factor 2 subunit 1", "gene_name": "EIF2S1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62841-1", "protein_name": "Small ribosomal subunit protein uS19", "gene_name": "RPS15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92616-1", "protein_name": "Stalled ribosome sensor GCN1", "gene_name": "GCN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "C0HME6-1", "protein_name": "RPL36 alternative reading frame protein", "gene_name": "RPL36", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62829-1", "protein_name": "Large ribosomal subunit protein uL14", "gene_name": "RPL23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32969-1", "protein_name": "Large ribosomal subunit protein uL6", "gene_name": "RPL9P7; RPL9P8; RPL9P9; RPL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30050-1", "protein_name": "Large ribosomal subunit protein uL11", "gene_name": "RPL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62266-1", "protein_name": "Small ribosomal subunit protein uS12", "gene_name": "RPS23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46777-1", "protein_name": "Large ribosomal subunit protein uL18", "gene_name": "RPL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P2K8-1", "protein_name": "eIF-2-alpha kinase GCN2", "gene_name": "EIF2AK4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41091-1", "protein_name": "Eukaryotic translation initiation factor 2 subunit 3", "gene_name": "EIF2S3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62753-1", "protein_name": "Small ribosomal subunit protein eS6", "gene_name": "RPS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27635-1", "protein_name": "Large ribosomal subunit protein uL16", "gene_name": "RPL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62913-1", "protein_name": "Large ribosomal subunit protein uL5", "gene_name": "RPL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36578-1", "protein_name": "Large ribosomal subunit protein uL4", "gene_name": "RPL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05388-1", "protein_name": "Large ribosomal subunit protein uL10", "gene_name": "RPLP0", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46779-1", "protein_name": "Large ribosomal subunit protein eL28", "gene_name": "RPL28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62857-1", "protein_name": "Small ribosomal subunit protein eS28", "gene_name": "RPS28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61313-1", "protein_name": "Large ribosomal subunit protein eL15", "gene_name": "RPL15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62081-1", "protein_name": "Small ribosomal subunit protein eS7", "gene_name": "RPS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71UM5-1", "protein_name": "Ribosomal protein eS27-like", "gene_name": "RPS27L", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P18621", "url": "https://www.uniprot.org/uniprotkb/P18621" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.1400365", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 102 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Nonsense-mediated mRNA decay in mammalian cells involves decapping, deadenylating, and exonucleolytic activities.", "journal": "Molecular cell", "date": "2003", "authors": "Lejeune F, Li X, Maquat LE", "reference": { "type": "PubMed", "id": "14527413", "url": "https://pubmed.ncbi.nlm.nih.gov/14527413" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P18621-1", "protein_name": "Large ribosomal subunit protein uL22", "gene_name": "RPL17", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H1J1-1", "protein_name": "Regulator of nonsense transcripts 3A", "gene_name": "UPF3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46776-1", "protein_name": "Large ribosomal subunit protein uL15", "gene_name": "RPL27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46782-1", "protein_name": "Small ribosomal subunit protein uS7", "gene_name": "RPS5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47914-1", "protein_name": "Large ribosomal subunit protein eL29", "gene_name": "RPL29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62244-1", "protein_name": "Small ribosomal subunit protein uS8", "gene_name": "RPS15A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22090-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 1", "gene_name": "RPS4Y1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P5R6-1", "protein_name": "Ribosomal protein eL22-like", "gene_name": "RPL22L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08708-1", "protein_name": "Small ribosomal subunit protein eS17", "gene_name": "RPS17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46783-1", "protein_name": "Small ribosomal subunit protein eS10", "gene_name": "RPS10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62917-1", "protein_name": "Large ribosomal subunit protein uL2", "gene_name": "RPL8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25398-1", "protein_name": "Small ribosomal subunit protein eS12", "gene_name": "RPS12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46781-1", "protein_name": "Small ribosomal subunit protein uS4", "gene_name": "RPS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62424-1", "protein_name": "Large ribosomal subunit protein eL8", "gene_name": "RPL7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62701-1", "protein_name": "Small ribosomal subunit protein eS4, X isoform", "gene_name": "RPS4X", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63220-1", "protein_name": "Small ribosomal subunit protein eS21", "gene_name": "RPS21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TD47-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 2", "gene_name": "RPS4Y2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11940-1", "protein_name": "Polyadenylate-binding protein 1", "gene_name": "PABPC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07020-1", "protein_name": "Large ribosomal subunit protein eL18", "gene_name": "RPL18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35268-1", "protein_name": "Large ribosomal subunit protein eL22", "gene_name": "RPL22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83881-1", "protein_name": "Large ribosomal subunit protein eL42", "gene_name": "RPL36A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61353-1", "protein_name": "Large ribosomal subunit protein eL27", "gene_name": "RPL27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNX3-1", "protein_name": "Ribosomal protein uL24-like", "gene_name": "RPL26L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02543-1", "protein_name": "Large ribosomal subunit protein eL20", "gene_name": "RPL18A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40429-1", "protein_name": "Large ribosomal subunit protein uL13", "gene_name": "RPL13A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63173-1", "protein_name": "Large ribosomal subunit protein eL38", "gene_name": "RPL38", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62910-1", "protein_name": "Large ribosomal subunit protein eL32", "gene_name": "RPL32", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39023-1", "protein_name": "Large ribosomal subunit protein uL3", "gene_name": "RPL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18077-1", "protein_name": "Large ribosomal subunit protein eL33", "gene_name": "RPL35A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61254-1", "protein_name": "Large ribosomal subunit protein uL24", "gene_name": "RPL26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84098-1", "protein_name": "Large ribosomal subunit protein eL19", "gene_name": "RPL19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62888-1", "protein_name": "Large ribosomal subunit protein eL30", "gene_name": "RPL30", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83731-1", "protein_name": "Large ribosomal subunit protein eL24", "gene_name": "RPL24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62899-1", "protein_name": "Large ribosomal subunit protein eL31", "gene_name": "RPL31", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62945-1", "protein_name": "Small ribosomal subunit protein eS32", "gene_name": "RPL41", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61927-1", "protein_name": "Large ribosomal subunit protein eL37", "gene_name": "RPL37", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42766-1", "protein_name": "Large ribosomal subunit protein uL29", "gene_name": "RPL35", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05387-1", "protein_name": "Large ribosomal subunit protein P2", "gene_name": "RPLP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92901-1", "protein_name": "Ribosomal protein uL3-like", "gene_name": "RPL3L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46778-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "RPL21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05386-1", "protein_name": "Large ribosomal subunit protein P1", "gene_name": "RPLP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49207-1", "protein_name": "Large ribosomal subunit protein eL34", "gene_name": "RPL34", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62891-1", "protein_name": "Large ribosomal subunit protein eL39", "gene_name": "RPL39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96L21-1", "protein_name": "Ribosomal protein uL16-like", "gene_name": "RPL10L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26373-1", "protein_name": "Large ribosomal subunit protein eL13", "gene_name": "RPL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86US8-1", "protein_name": "Telomerase-binding protein EST1A", "gene_name": "SMG6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYD1-1", "protein_name": "Eukaryotic peptide chain release factor GTP-binding subunit ERF3B", "gene_name": "GSPT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60866-1", "protein_name": "Small ribosomal subunit protein uS10", "gene_name": "RPS20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969Q0-1", "protein_name": "Ribosomal protein eL42-like", "gene_name": "RPL36AL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61247-1", "protein_name": "Small ribosomal subunit protein eS1", "gene_name": "RPS3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62854-1", "protein_name": "Small ribosomal subunit protein eS26", "gene_name": "RPS26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62851-1", "protein_name": "Small ribosomal subunit protein eS25", "gene_name": "RPS25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08865-1", "protein_name": "Small ribosomal subunit protein uS2", "gene_name": "RPSA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62847-1", "protein_name": "Small ribosomal subunit protein eS24", "gene_name": "RPS24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62861-1", "protein_name": "Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein", "gene_name": "FAU", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62241-1", "protein_name": "Small ribosomal subunit protein eS8", "gene_name": "RPS8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62277-1", "protein_name": "Small ribosomal subunit protein uS15", "gene_name": "RPS13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39019-1", "protein_name": "Small ribosomal subunit protein eS19", "gene_name": "RPS19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92540-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG7", "gene_name": "SMG7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPR3-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG5", "gene_name": "SMG5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62269-1", "protein_name": "Small ribosomal subunit protein uS13", "gene_name": "RPS18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02878-1", "protein_name": "Large ribosomal subunit protein eL6", "gene_name": "RPL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62273-1", "protein_name": "Small ribosomal subunit protein uS14", "gene_name": "RPS29", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8ND04-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG8", "gene_name": "SMG8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPI6-1", "protein_name": "mRNA-decapping enzyme 1A", "gene_name": "DCP1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01780-1", "protein_name": "Exosome complex component 10", "gene_name": "EXOSC10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42677-1", "protein_name": "Small ribosomal subunit protein eS27", "gene_name": "RPS27", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38919-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "EIF4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61326-1", "protein_name": "Protein mago nashi homolog", "gene_name": "MAGOH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EH5-1", "protein_name": "Ribosomal protein eL39-like 2", "gene_name": "RPL39L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15287-1", "protein_name": "RNA-binding protein with serine-rich domain 1", "gene_name": "RNPS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0W8-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG9", "gene_name": "SMG9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62263-1", "protein_name": "Small ribosomal subunit protein uS11", "gene_name": "RPS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IU60-1", "protein_name": "m7GpppN-mRNA hydrolase", "gene_name": "DCP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61513-1", "protein_name": "Large ribosomal subunit protein eL43", "gene_name": "RPL37A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18124-1", "protein_name": "Large ribosomal subunit protein uL30", "gene_name": "RPL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZI7-1", "protein_name": "Regulator of nonsense transcripts 3B", "gene_name": "UPF3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15880-1", "protein_name": "Small ribosomal subunit protein uS5", "gene_name": "RPS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62750-1", "protein_name": "Large ribosomal subunit protein uL23", "gene_name": "RPL23A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62280-1", "protein_name": "Small ribosomal subunit protein uS17", "gene_name": "RPS11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62249-1", "protein_name": "Small ribosomal subunit protein uS9", "gene_name": "RPS16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50914-1", "protein_name": "Large ribosomal subunit protein eL14", "gene_name": "RPL14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62906-1", "protein_name": "Large ribosomal subunit protein uL1", "gene_name": "RPL10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23396-1", "protein_name": "Small ribosomal subunit protein uS3", "gene_name": "RPS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63151-1", "protein_name": "Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform", "gene_name": "PPP2R2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A72-1", "protein_name": "Protein mago nashi homolog 2", "gene_name": "MAGOHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62841-1", "protein_name": "Small ribosomal subunit protein uS19", "gene_name": "RPS15", "tax_name": "Human" }, { "uniprot_canonical_ac": "C0HME6-1", "protein_name": "RPL36 alternative reading frame protein", "gene_name": "RPL36", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62829-1", "protein_name": "Large ribosomal subunit protein uL14", "gene_name": "RPL23", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95453-1", "protein_name": "Poly(A)-specific ribonuclease PARN", "gene_name": "PARN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32969-1", "protein_name": "Large ribosomal subunit protein uL6", "gene_name": "RPL9P7; RPL9P8; RPL9P9; RPL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30050-1", "protein_name": "Large ribosomal subunit protein uL11", "gene_name": "RPL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q04637-1", "protein_name": "Eukaryotic translation initiation factor 4 gamma 1", "gene_name": "EIF4G1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62266-1", "protein_name": "Small ribosomal subunit protein uS12", "gene_name": "RPS23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46777-1", "protein_name": "Large ribosomal subunit protein uL18", "gene_name": "RPL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96Q15-1", "protein_name": "Serine/threonine-protein kinase SMG1", "gene_name": "SMG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62753-1", "protein_name": "Small ribosomal subunit protein eS6", "gene_name": "RPS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27635-1", "protein_name": "Large ribosomal subunit protein uL16", "gene_name": "RPL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62913-1", "protein_name": "Large ribosomal subunit protein uL5", "gene_name": "RPL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36578-1", "protein_name": "Large ribosomal subunit protein uL4", "gene_name": "RPL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HAU5-1", "protein_name": "Regulator of nonsense transcripts 2", "gene_name": "UPF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5S9-1", "protein_name": "RNA-binding protein 8A", "gene_name": "RBM8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IZH2-1", "protein_name": "5'-3' exoribonuclease 1", "gene_name": "XRN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15234-1", "protein_name": "Protein CASC3", "gene_name": "CASC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05388-1", "protein_name": "Large ribosomal subunit protein uL10", "gene_name": "RPLP0", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46779-1", "protein_name": "Large ribosomal subunit protein eL28", "gene_name": "RPL28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62857-1", "protein_name": "Small ribosomal subunit protein eS28", "gene_name": "RPS28", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPJ4-1", "protein_name": "Proline-rich nuclear receptor coactivator 2", "gene_name": "PNRC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15170-1", "protein_name": "Eukaryotic peptide chain release factor GTP-binding subunit ERF3A", "gene_name": "GSPT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62495-1", "protein_name": "Eukaryotic peptide chain release factor subunit 1", "gene_name": "ETF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61313-1", "protein_name": "Large ribosomal subunit protein eL15", "gene_name": "RPL15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62081-1", "protein_name": "Small ribosomal subunit protein eS7", "gene_name": "RPS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71UM5-1", "protein_name": "Ribosomal protein eS27-like", "gene_name": "RPS27L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30153-1", "protein_name": "Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform", "gene_name": "PPP2R1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67775-1", "protein_name": "Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform", "gene_name": "PPP2CA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92900-1", "protein_name": "Regulator of nonsense transcripts 1", "gene_name": "UPF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P18621", "url": "https://www.uniprot.org/uniprotkb/P18621" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.14527413", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 120 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Induction of CHOP expression by amino acid limitation requires both ATF4 expression and ATF2 phosphorylation.", "journal": "The Journal of biological chemistry", "date": "2004", "authors": "Averous J, Bruhat A, Jousse C, Carraro V, Thiel G, Fafournoux P", "reference": { "type": "PubMed", "id": "14630918", "url": "https://pubmed.ncbi.nlm.nih.gov/14630918" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P18621-1", "protein_name": "Large ribosomal subunit protein uL22", "gene_name": "RPL17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46776-1", "protein_name": "Large ribosomal subunit protein uL15", "gene_name": "RPL27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46782-1", "protein_name": "Small ribosomal subunit protein uS7", "gene_name": "RPS5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47914-1", "protein_name": "Large ribosomal subunit protein eL29", "gene_name": "RPL29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62244-1", "protein_name": "Small ribosomal subunit protein uS8", "gene_name": "RPS15A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22090-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 1", "gene_name": "RPS4Y1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P5R6-1", "protein_name": "Ribosomal protein eL22-like", "gene_name": "RPL22L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08708-1", "protein_name": "Small ribosomal subunit protein eS17", "gene_name": "RPS17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46783-1", "protein_name": "Small ribosomal subunit protein eS10", "gene_name": "RPS10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62917-1", "protein_name": "Large ribosomal subunit protein uL2", "gene_name": "RPL8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25398-1", "protein_name": "Small ribosomal subunit protein eS12", "gene_name": "RPS12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46781-1", "protein_name": "Small ribosomal subunit protein uS4", "gene_name": "RPS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62424-1", "protein_name": "Large ribosomal subunit protein eL8", "gene_name": "RPL7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62701-1", "protein_name": "Small ribosomal subunit protein eS4, X isoform", "gene_name": "RPS4X", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63220-1", "protein_name": "Small ribosomal subunit protein eS21", "gene_name": "RPS21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TD47-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 2", "gene_name": "RPS4Y2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96RU7-1", "protein_name": "Tribbles homolog 3", "gene_name": "TRIB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08243-1", "protein_name": "Asparagine synthetase [glutamine-hydrolyzing]", "gene_name": "ASNS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53567-1", "protein_name": "CCAAT/enhancer-binding protein gamma", "gene_name": "CEBPG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18847-1", "protein_name": "Cyclic AMP-dependent transcription factor ATF-3", "gene_name": "ATF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35638-1", "protein_name": "DNA damage-inducible transcript 3 protein", "gene_name": "DDIT3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15336-1", "protein_name": "Cyclic AMP-dependent transcription factor ATF-2", "gene_name": "ATF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18848-1", "protein_name": "Cyclic AMP-dependent transcription factor ATF-4", "gene_name": "ATF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07020-1", "protein_name": "Large ribosomal subunit protein eL18", "gene_name": "RPL18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35268-1", "protein_name": "Large ribosomal subunit protein eL22", "gene_name": "RPL22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83881-1", "protein_name": "Large ribosomal subunit protein eL42", "gene_name": "RPL36A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61353-1", "protein_name": "Large ribosomal subunit protein eL27", "gene_name": "RPL27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNX3-1", "protein_name": "Ribosomal protein uL24-like", "gene_name": "RPL26L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02543-1", "protein_name": "Large ribosomal subunit protein eL20", "gene_name": "RPL18A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40429-1", "protein_name": "Large ribosomal subunit protein uL13", "gene_name": "RPL13A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63173-1", "protein_name": "Large ribosomal subunit protein eL38", "gene_name": "RPL38", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62910-1", "protein_name": "Large ribosomal subunit protein eL32", "gene_name": "RPL32", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39023-1", "protein_name": "Large ribosomal subunit protein uL3", "gene_name": "RPL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18077-1", "protein_name": "Large ribosomal subunit protein eL33", "gene_name": "RPL35A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61254-1", "protein_name": "Large ribosomal subunit protein uL24", "gene_name": "RPL26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84098-1", "protein_name": "Large ribosomal subunit protein eL19", "gene_name": "RPL19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62888-1", "protein_name": "Large ribosomal subunit protein eL30", "gene_name": "RPL30", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83731-1", "protein_name": "Large ribosomal subunit protein eL24", "gene_name": "RPL24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62899-1", "protein_name": "Large ribosomal subunit protein eL31", "gene_name": "RPL31", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62945-1", "protein_name": "Small ribosomal subunit protein eS32", "gene_name": "RPL41", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61927-1", "protein_name": "Large ribosomal subunit protein eL37", "gene_name": "RPL37", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42766-1", "protein_name": "Large ribosomal subunit protein uL29", "gene_name": "RPL35", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05387-1", "protein_name": "Large ribosomal subunit protein P2", "gene_name": "RPLP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92901-1", "protein_name": "Ribosomal protein uL3-like", "gene_name": "RPL3L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46778-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "RPL21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05386-1", "protein_name": "Large ribosomal subunit protein P1", "gene_name": "RPLP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49207-1", "protein_name": "Large ribosomal subunit protein eL34", "gene_name": "RPL34", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62891-1", "protein_name": "Large ribosomal subunit protein eL39", "gene_name": "RPL39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96L21-1", "protein_name": "Ribosomal protein uL16-like", "gene_name": "RPL10L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26373-1", "protein_name": "Large ribosomal subunit protein eL13", "gene_name": "RPL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60866-1", "protein_name": "Small ribosomal subunit protein uS10", "gene_name": "RPS20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969Q0-1", "protein_name": "Ribosomal protein eL42-like", "gene_name": "RPL36AL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61247-1", "protein_name": "Small ribosomal subunit protein eS1", "gene_name": "RPS3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P2X3-1", "protein_name": "Protein IMPACT", "gene_name": "IMPACT", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62854-1", "protein_name": "Small ribosomal subunit protein eS26", "gene_name": "RPS26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62851-1", "protein_name": "Small ribosomal subunit protein eS25", "gene_name": "RPS25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08865-1", "protein_name": "Small ribosomal subunit protein uS2", "gene_name": "RPSA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62847-1", "protein_name": "Small ribosomal subunit protein eS24", "gene_name": "RPS24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62861-1", "protein_name": "Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein", "gene_name": "FAU", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62241-1", "protein_name": "Small ribosomal subunit protein eS8", "gene_name": "RPS8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUX1-1", "protein_name": "Glutathione-specific gamma-glutamylcyclotransferase 1", "gene_name": "CHAC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62277-1", "protein_name": "Small ribosomal subunit protein uS15", "gene_name": "RPS13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39019-1", "protein_name": "Small ribosomal subunit protein eS19", "gene_name": "RPS19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62269-1", "protein_name": "Small ribosomal subunit protein uS13", "gene_name": "RPS18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02878-1", "protein_name": "Large ribosomal subunit protein eL6", "gene_name": "RPL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62273-1", "protein_name": "Small ribosomal subunit protein uS14", "gene_name": "RPS29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17676-1", "protein_name": "CCAAT/enhancer-binding protein beta", "gene_name": "CEBPB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20042-1", "protein_name": "Eukaryotic translation initiation factor 2 subunit 2", "gene_name": "EIF2S2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2D1-1", "protein_name": "Cyclic AMP-dependent transcription factor ATF-5", "gene_name": "ATF5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42677-1", "protein_name": "Small ribosomal subunit protein eS27", "gene_name": "RPS27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EH5-1", "protein_name": "Ribosomal protein eL39-like 2", "gene_name": "RPL39L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62263-1", "protein_name": "Small ribosomal subunit protein uS11", "gene_name": "RPS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61513-1", "protein_name": "Large ribosomal subunit protein eL43", "gene_name": "RPL37A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18124-1", "protein_name": "Large ribosomal subunit protein uL30", "gene_name": "RPL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75807-1", "protein_name": "Protein phosphatase 1 regulatory subunit 15A", "gene_name": "PPP1R15A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15880-1", "protein_name": "Small ribosomal subunit protein uS5", "gene_name": "RPS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62750-1", "protein_name": "Large ribosomal subunit protein uL23", "gene_name": "RPL23A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62280-1", "protein_name": "Small ribosomal subunit protein uS17", "gene_name": "RPS11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62249-1", "protein_name": "Small ribosomal subunit protein uS9", "gene_name": "RPS16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50914-1", "protein_name": "Large ribosomal subunit protein eL14", "gene_name": "RPL14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62906-1", "protein_name": "Large ribosomal subunit protein uL1", "gene_name": "RPL10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23396-1", "protein_name": "Small ribosomal subunit protein uS3", "gene_name": "RPS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05198-1", "protein_name": "Eukaryotic translation initiation factor 2 subunit 1", "gene_name": "EIF2S1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62841-1", "protein_name": "Small ribosomal subunit protein uS19", "gene_name": "RPS15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92616-1", "protein_name": "Stalled ribosome sensor GCN1", "gene_name": "GCN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "C0HME6-1", "protein_name": "RPL36 alternative reading frame protein", "gene_name": "RPL36", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62829-1", "protein_name": "Large ribosomal subunit protein uL14", "gene_name": "RPL23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32969-1", "protein_name": "Large ribosomal subunit protein uL6", "gene_name": "RPL9P7; RPL9P8; RPL9P9; RPL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30050-1", "protein_name": "Large ribosomal subunit protein uL11", "gene_name": "RPL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62266-1", "protein_name": "Small ribosomal subunit protein uS12", "gene_name": "RPS23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46777-1", "protein_name": "Large ribosomal subunit protein uL18", "gene_name": "RPL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P2K8-1", "protein_name": "eIF-2-alpha kinase GCN2", "gene_name": "EIF2AK4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BQI3-1", "protein_name": "Eukaryotic translation initiation factor 2-alpha kinase 1", "gene_name": "EIF2AK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41091-1", "protein_name": "Eukaryotic translation initiation factor 2 subunit 3", "gene_name": "EIF2S3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62753-1", "protein_name": "Small ribosomal subunit protein eS6", "gene_name": "RPS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27635-1", "protein_name": "Large ribosomal subunit protein uL16", "gene_name": "RPL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62913-1", "protein_name": "Large ribosomal subunit protein uL5", "gene_name": "RPL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36578-1", "protein_name": "Large ribosomal subunit protein uL4", "gene_name": "RPL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05388-1", "protein_name": "Large ribosomal subunit protein uL10", "gene_name": "RPLP0", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46779-1", "protein_name": "Large ribosomal subunit protein eL28", "gene_name": "RPL28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62857-1", "protein_name": "Small ribosomal subunit protein eS28", "gene_name": "RPS28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61313-1", "protein_name": "Large ribosomal subunit protein eL15", "gene_name": "RPL15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62081-1", "protein_name": "Small ribosomal subunit protein eS7", "gene_name": "RPS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71UM5-1", "protein_name": "Ribosomal protein eS27-like", "gene_name": "RPS27L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13322-1", "protein_name": "Growth factor receptor-bound protein 10", "gene_name": "GRB10", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P18621", "url": "https://www.uniprot.org/uniprotkb/P18621" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.14630918", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 107 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Phosphorylation of hUPF1 induces formation of mRNA surveillance complexes containing hSMG-5 and hSMG-7.", "journal": "Molecular cell", "date": "2003", "authors": "Ohnishi T, Yamashita A, Kashima I, Schell T, Anders KR, Grimson A, Hachiya T, Hentze MW, Anderson P, Ohno S", "reference": { "type": "PubMed", "id": "14636577", "url": "https://pubmed.ncbi.nlm.nih.gov/14636577" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P18621-1", "protein_name": "Large ribosomal subunit protein uL22", "gene_name": "RPL17", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H1J1-1", "protein_name": "Regulator of nonsense transcripts 3A", "gene_name": "UPF3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46776-1", "protein_name": "Large ribosomal subunit protein uL15", "gene_name": "RPL27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46782-1", "protein_name": "Small ribosomal subunit protein uS7", "gene_name": "RPS5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47914-1", "protein_name": "Large ribosomal subunit protein eL29", "gene_name": "RPL29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62244-1", "protein_name": "Small ribosomal subunit protein uS8", "gene_name": "RPS15A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22090-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 1", "gene_name": "RPS4Y1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P5R6-1", "protein_name": "Ribosomal protein eL22-like", "gene_name": "RPL22L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08708-1", "protein_name": "Small ribosomal subunit protein eS17", "gene_name": "RPS17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46783-1", "protein_name": "Small ribosomal subunit protein eS10", "gene_name": "RPS10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62917-1", "protein_name": "Large ribosomal subunit protein uL2", "gene_name": "RPL8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25398-1", "protein_name": "Small ribosomal subunit protein eS12", "gene_name": "RPS12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46781-1", "protein_name": "Small ribosomal subunit protein uS4", "gene_name": "RPS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62424-1", "protein_name": "Large ribosomal subunit protein eL8", "gene_name": "RPL7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62701-1", "protein_name": "Small ribosomal subunit protein eS4, X isoform", "gene_name": "RPS4X", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63220-1", "protein_name": "Small ribosomal subunit protein eS21", "gene_name": "RPS21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TD47-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 2", "gene_name": "RPS4Y2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11940-1", "protein_name": "Polyadenylate-binding protein 1", "gene_name": "PABPC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07020-1", "protein_name": "Large ribosomal subunit protein eL18", "gene_name": "RPL18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35268-1", "protein_name": "Large ribosomal subunit protein eL22", "gene_name": "RPL22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83881-1", "protein_name": "Large ribosomal subunit protein eL42", "gene_name": "RPL36A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61353-1", "protein_name": "Large ribosomal subunit protein eL27", "gene_name": "RPL27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNX3-1", "protein_name": "Ribosomal protein uL24-like", "gene_name": "RPL26L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02543-1", "protein_name": "Large ribosomal subunit protein eL20", "gene_name": "RPL18A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40429-1", "protein_name": "Large ribosomal subunit protein uL13", "gene_name": "RPL13A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63173-1", "protein_name": "Large ribosomal subunit protein eL38", "gene_name": "RPL38", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62910-1", "protein_name": "Large ribosomal subunit protein eL32", "gene_name": "RPL32", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39023-1", "protein_name": "Large ribosomal subunit protein uL3", "gene_name": "RPL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18077-1", "protein_name": "Large ribosomal subunit protein eL33", "gene_name": "RPL35A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61254-1", "protein_name": "Large ribosomal subunit protein uL24", "gene_name": "RPL26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84098-1", "protein_name": "Large ribosomal subunit protein eL19", "gene_name": "RPL19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62888-1", "protein_name": "Large ribosomal subunit protein eL30", "gene_name": "RPL30", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83731-1", "protein_name": "Large ribosomal subunit protein eL24", "gene_name": "RPL24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62899-1", "protein_name": "Large ribosomal subunit protein eL31", "gene_name": "RPL31", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62945-1", "protein_name": "Small ribosomal subunit protein eS32", "gene_name": "RPL41", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61927-1", "protein_name": "Large ribosomal subunit protein eL37", "gene_name": "RPL37", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42766-1", "protein_name": "Large ribosomal subunit protein uL29", "gene_name": "RPL35", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05387-1", "protein_name": "Large ribosomal subunit protein P2", "gene_name": "RPLP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92901-1", "protein_name": "Ribosomal protein uL3-like", "gene_name": "RPL3L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46778-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "RPL21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05386-1", "protein_name": "Large ribosomal subunit protein P1", "gene_name": "RPLP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49207-1", "protein_name": "Large ribosomal subunit protein eL34", "gene_name": "RPL34", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62891-1", "protein_name": "Large ribosomal subunit protein eL39", "gene_name": "RPL39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96L21-1", "protein_name": "Ribosomal protein uL16-like", "gene_name": "RPL10L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26373-1", "protein_name": "Large ribosomal subunit protein eL13", "gene_name": "RPL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86US8-1", "protein_name": "Telomerase-binding protein EST1A", "gene_name": "SMG6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYD1-1", "protein_name": "Eukaryotic peptide chain release factor GTP-binding subunit ERF3B", "gene_name": "GSPT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60866-1", "protein_name": "Small ribosomal subunit protein uS10", "gene_name": "RPS20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969Q0-1", "protein_name": "Ribosomal protein eL42-like", "gene_name": "RPL36AL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61247-1", "protein_name": "Small ribosomal subunit protein eS1", "gene_name": "RPS3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62854-1", "protein_name": "Small ribosomal subunit protein eS26", "gene_name": "RPS26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62851-1", "protein_name": "Small ribosomal subunit protein eS25", "gene_name": "RPS25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08865-1", "protein_name": "Small ribosomal subunit protein uS2", "gene_name": "RPSA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62847-1", "protein_name": "Small ribosomal subunit protein eS24", "gene_name": "RPS24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62861-1", "protein_name": "Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein", "gene_name": "FAU", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62241-1", "protein_name": "Small ribosomal subunit protein eS8", "gene_name": "RPS8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62277-1", "protein_name": "Small ribosomal subunit protein uS15", "gene_name": "RPS13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39019-1", "protein_name": "Small ribosomal subunit protein eS19", "gene_name": "RPS19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92540-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG7", "gene_name": "SMG7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPR3-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG5", "gene_name": "SMG5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62269-1", "protein_name": "Small ribosomal subunit protein uS13", "gene_name": "RPS18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02878-1", "protein_name": "Large ribosomal subunit protein eL6", "gene_name": "RPL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62273-1", "protein_name": "Small ribosomal subunit protein uS14", "gene_name": "RPS29", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8ND04-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG8", "gene_name": "SMG8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPI6-1", "protein_name": "mRNA-decapping enzyme 1A", "gene_name": "DCP1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42677-1", "protein_name": "Small ribosomal subunit protein eS27", "gene_name": "RPS27", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38919-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "EIF4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61326-1", "protein_name": "Protein mago nashi homolog", "gene_name": "MAGOH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EH5-1", "protein_name": "Ribosomal protein eL39-like 2", "gene_name": "RPL39L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15287-1", "protein_name": "RNA-binding protein with serine-rich domain 1", "gene_name": "RNPS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0W8-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG9", "gene_name": "SMG9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62263-1", "protein_name": "Small ribosomal subunit protein uS11", "gene_name": "RPS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61513-1", "protein_name": "Large ribosomal subunit protein eL43", "gene_name": "RPL37A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18124-1", "protein_name": "Large ribosomal subunit protein uL30", "gene_name": "RPL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZI7-1", "protein_name": "Regulator of nonsense transcripts 3B", "gene_name": "UPF3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15880-1", "protein_name": "Small ribosomal subunit protein uS5", "gene_name": "RPS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62750-1", "protein_name": "Large ribosomal subunit protein uL23", "gene_name": "RPL23A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62280-1", "protein_name": "Small ribosomal subunit protein uS17", "gene_name": "RPS11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62249-1", "protein_name": "Small ribosomal subunit protein uS9", "gene_name": "RPS16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50914-1", "protein_name": "Large ribosomal subunit protein eL14", "gene_name": "RPL14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62906-1", "protein_name": "Large ribosomal subunit protein uL1", "gene_name": "RPL10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23396-1", "protein_name": "Small ribosomal subunit protein uS3", "gene_name": "RPS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63151-1", "protein_name": "Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform", "gene_name": "PPP2R2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A72-1", "protein_name": "Protein mago nashi homolog 2", "gene_name": "MAGOHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62841-1", "protein_name": "Small ribosomal subunit protein uS19", "gene_name": "RPS15", "tax_name": "Human" }, { "uniprot_canonical_ac": "C0HME6-1", "protein_name": "RPL36 alternative reading frame protein", "gene_name": "RPL36", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62829-1", "protein_name": "Large ribosomal subunit protein uL14", "gene_name": "RPL23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32969-1", "protein_name": "Large ribosomal subunit protein uL6", "gene_name": "RPL9P7; RPL9P8; RPL9P9; RPL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30050-1", "protein_name": "Large ribosomal subunit protein uL11", "gene_name": "RPL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q04637-1", "protein_name": "Eukaryotic translation initiation factor 4 gamma 1", "gene_name": "EIF4G1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62266-1", "protein_name": "Small ribosomal subunit protein uS12", "gene_name": "RPS23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46777-1", "protein_name": "Large ribosomal subunit protein uL18", "gene_name": "RPL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96Q15-1", "protein_name": "Serine/threonine-protein kinase SMG1", "gene_name": "SMG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62753-1", "protein_name": "Small ribosomal subunit protein eS6", "gene_name": "RPS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27635-1", "protein_name": "Large ribosomal subunit protein uL16", "gene_name": "RPL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62913-1", "protein_name": "Large ribosomal subunit protein uL5", "gene_name": "RPL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36578-1", "protein_name": "Large ribosomal subunit protein uL4", "gene_name": "RPL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HAU5-1", "protein_name": "Regulator of nonsense transcripts 2", "gene_name": "UPF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5S9-1", "protein_name": "RNA-binding protein 8A", "gene_name": "RBM8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15234-1", "protein_name": "Protein CASC3", "gene_name": "CASC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05388-1", "protein_name": "Large ribosomal subunit protein uL10", "gene_name": "RPLP0", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46779-1", "protein_name": "Large ribosomal subunit protein eL28", "gene_name": "RPL28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62857-1", "protein_name": "Small ribosomal subunit protein eS28", "gene_name": "RPS28", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPJ4-1", "protein_name": "Proline-rich nuclear receptor coactivator 2", "gene_name": "PNRC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15170-1", "protein_name": "Eukaryotic peptide chain release factor GTP-binding subunit ERF3A", "gene_name": "GSPT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62495-1", "protein_name": "Eukaryotic peptide chain release factor subunit 1", "gene_name": "ETF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61313-1", "protein_name": "Large ribosomal subunit protein eL15", "gene_name": "RPL15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62081-1", "protein_name": "Small ribosomal subunit protein eS7", "gene_name": "RPS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71UM5-1", "protein_name": "Ribosomal protein eS27-like", "gene_name": "RPS27L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30153-1", "protein_name": "Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform", "gene_name": "PPP2R1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67775-1", "protein_name": "Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform", "gene_name": "PPP2CA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92900-1", "protein_name": "Regulator of nonsense transcripts 1", "gene_name": "UPF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P18621", "url": "https://www.uniprot.org/uniprotkb/P18621" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 860, "end_pos": 860, "sequence_org": "D", "sequence_mut": "A", "comment": "Abolishes stimulation of RENT1 dephosphorylation.", "evidence": [ { "database": "UniProtKB", "id": "Q9UPR3", "url": "https://www.uniprot.org/uniprotkb/Q9UPR3" }, { "database": "PubMed", "id": "14636577", "url": "https://pubmed.ncbi.nlm.nih.gov/14636577" } ], "uniprot_canonical_ac": "Q9UPR3-1" } ], "record_id": "pubmed.14636577", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 116 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Premature termination codons enhance mRNA decapping in human cells.", "journal": "Nucleic acids research", "date": "2004", "authors": "Couttet P, Grange T", "reference": { "type": "PubMed", "id": "14742663", "url": "https://pubmed.ncbi.nlm.nih.gov/14742663" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P18621-1", "protein_name": "Large ribosomal subunit protein uL22", "gene_name": "RPL17", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H1J1-1", "protein_name": "Regulator of nonsense transcripts 3A", "gene_name": "UPF3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46776-1", "protein_name": "Large ribosomal subunit protein uL15", "gene_name": "RPL27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46782-1", "protein_name": "Small ribosomal subunit protein uS7", "gene_name": "RPS5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47914-1", "protein_name": "Large ribosomal subunit protein eL29", "gene_name": "RPL29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62244-1", "protein_name": "Small ribosomal subunit protein uS8", "gene_name": "RPS15A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22090-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 1", "gene_name": "RPS4Y1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P5R6-1", "protein_name": "Ribosomal protein eL22-like", "gene_name": "RPL22L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08708-1", "protein_name": "Small ribosomal subunit protein eS17", "gene_name": "RPS17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46783-1", "protein_name": "Small ribosomal subunit protein eS10", "gene_name": "RPS10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62917-1", "protein_name": "Large ribosomal subunit protein uL2", "gene_name": "RPL8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25398-1", "protein_name": "Small ribosomal subunit protein eS12", "gene_name": "RPS12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46781-1", "protein_name": "Small ribosomal subunit protein uS4", "gene_name": "RPS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62424-1", "protein_name": "Large ribosomal subunit protein eL8", "gene_name": "RPL7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62701-1", "protein_name": "Small ribosomal subunit protein eS4, X isoform", "gene_name": "RPS4X", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63220-1", "protein_name": "Small ribosomal subunit protein eS21", "gene_name": "RPS21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TD47-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 2", "gene_name": "RPS4Y2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11940-1", "protein_name": "Polyadenylate-binding protein 1", "gene_name": "PABPC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07020-1", "protein_name": "Large ribosomal subunit protein eL18", "gene_name": "RPL18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35268-1", "protein_name": "Large ribosomal subunit protein eL22", "gene_name": "RPL22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83881-1", "protein_name": "Large ribosomal subunit protein eL42", "gene_name": "RPL36A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61353-1", "protein_name": "Large ribosomal subunit protein eL27", "gene_name": "RPL27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNX3-1", "protein_name": "Ribosomal protein uL24-like", "gene_name": "RPL26L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02543-1", "protein_name": "Large ribosomal subunit protein eL20", "gene_name": "RPL18A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40429-1", "protein_name": "Large ribosomal subunit protein uL13", "gene_name": "RPL13A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63173-1", "protein_name": "Large ribosomal subunit protein eL38", "gene_name": "RPL38", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62910-1", "protein_name": "Large ribosomal subunit protein eL32", "gene_name": "RPL32", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39023-1", "protein_name": "Large ribosomal subunit protein uL3", "gene_name": "RPL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18077-1", "protein_name": "Large ribosomal subunit protein eL33", "gene_name": "RPL35A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61254-1", "protein_name": "Large ribosomal subunit protein uL24", "gene_name": "RPL26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84098-1", "protein_name": "Large ribosomal subunit protein eL19", "gene_name": "RPL19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62888-1", "protein_name": "Large ribosomal subunit protein eL30", "gene_name": "RPL30", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83731-1", "protein_name": "Large ribosomal subunit protein eL24", "gene_name": "RPL24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62899-1", "protein_name": "Large ribosomal subunit protein eL31", "gene_name": "RPL31", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62945-1", "protein_name": "Small ribosomal subunit protein eS32", "gene_name": "RPL41", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61927-1", "protein_name": "Large ribosomal subunit protein eL37", "gene_name": "RPL37", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42766-1", "protein_name": "Large ribosomal subunit protein uL29", "gene_name": "RPL35", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05387-1", "protein_name": "Large ribosomal subunit protein P2", "gene_name": "RPLP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92901-1", "protein_name": "Ribosomal protein uL3-like", "gene_name": "RPL3L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46778-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "RPL21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05386-1", "protein_name": "Large ribosomal subunit protein P1", "gene_name": "RPLP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49207-1", "protein_name": "Large ribosomal subunit protein eL34", "gene_name": "RPL34", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62891-1", "protein_name": "Large ribosomal subunit protein eL39", "gene_name": "RPL39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96L21-1", "protein_name": "Ribosomal protein uL16-like", "gene_name": "RPL10L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26373-1", "protein_name": "Large ribosomal subunit protein eL13", "gene_name": "RPL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86US8-1", "protein_name": "Telomerase-binding protein EST1A", "gene_name": "SMG6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYD1-1", "protein_name": "Eukaryotic peptide chain release factor GTP-binding subunit ERF3B", "gene_name": "GSPT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60866-1", "protein_name": "Small ribosomal subunit protein uS10", "gene_name": "RPS20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969Q0-1", "protein_name": "Ribosomal protein eL42-like", "gene_name": "RPL36AL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61247-1", "protein_name": "Small ribosomal subunit protein eS1", "gene_name": "RPS3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62854-1", "protein_name": "Small ribosomal subunit protein eS26", "gene_name": "RPS26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62851-1", "protein_name": "Small ribosomal subunit protein eS25", "gene_name": "RPS25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08865-1", "protein_name": "Small ribosomal subunit protein uS2", "gene_name": "RPSA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62847-1", "protein_name": "Small ribosomal subunit protein eS24", "gene_name": "RPS24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62861-1", "protein_name": "Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein", "gene_name": "FAU", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62241-1", "protein_name": "Small ribosomal subunit protein eS8", "gene_name": "RPS8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62277-1", "protein_name": "Small ribosomal subunit protein uS15", "gene_name": "RPS13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39019-1", "protein_name": "Small ribosomal subunit protein eS19", "gene_name": "RPS19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92540-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG7", "gene_name": "SMG7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPR3-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG5", "gene_name": "SMG5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62269-1", "protein_name": "Small ribosomal subunit protein uS13", "gene_name": "RPS18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02878-1", "protein_name": "Large ribosomal subunit protein eL6", "gene_name": "RPL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62273-1", "protein_name": "Small ribosomal subunit protein uS14", "gene_name": "RPS29", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8ND04-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG8", "gene_name": "SMG8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPI6-1", "protein_name": "mRNA-decapping enzyme 1A", "gene_name": "DCP1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42677-1", "protein_name": "Small ribosomal subunit protein eS27", "gene_name": "RPS27", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38919-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "EIF4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61326-1", "protein_name": "Protein mago nashi homolog", "gene_name": "MAGOH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EH5-1", "protein_name": "Ribosomal protein eL39-like 2", "gene_name": "RPL39L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15287-1", "protein_name": "RNA-binding protein with serine-rich domain 1", "gene_name": "RNPS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0W8-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG9", "gene_name": "SMG9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62263-1", "protein_name": "Small ribosomal subunit protein uS11", "gene_name": "RPS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61513-1", "protein_name": "Large ribosomal subunit protein eL43", "gene_name": "RPL37A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18124-1", "protein_name": "Large ribosomal subunit protein uL30", "gene_name": "RPL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZI7-1", "protein_name": "Regulator of nonsense transcripts 3B", "gene_name": "UPF3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15880-1", "protein_name": "Small ribosomal subunit protein uS5", "gene_name": "RPS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62750-1", "protein_name": "Large ribosomal subunit protein uL23", "gene_name": "RPL23A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62280-1", "protein_name": "Small ribosomal subunit protein uS17", "gene_name": "RPS11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62249-1", "protein_name": "Small ribosomal subunit protein uS9", "gene_name": "RPS16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50914-1", "protein_name": "Large ribosomal subunit protein eL14", "gene_name": "RPL14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62906-1", "protein_name": "Large ribosomal subunit protein uL1", "gene_name": "RPL10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23396-1", "protein_name": "Small ribosomal subunit protein uS3", "gene_name": "RPS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63151-1", "protein_name": "Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform", "gene_name": "PPP2R2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A72-1", "protein_name": "Protein mago nashi homolog 2", "gene_name": "MAGOHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62841-1", "protein_name": "Small ribosomal subunit protein uS19", "gene_name": "RPS15", "tax_name": "Human" }, { "uniprot_canonical_ac": "C0HME6-1", "protein_name": "RPL36 alternative reading frame protein", "gene_name": "RPL36", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62829-1", "protein_name": "Large ribosomal subunit protein uL14", "gene_name": "RPL23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32969-1", "protein_name": "Large ribosomal subunit protein uL6", "gene_name": "RPL9P7; RPL9P8; RPL9P9; RPL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30050-1", "protein_name": "Large ribosomal subunit protein uL11", "gene_name": "RPL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q04637-1", "protein_name": "Eukaryotic translation initiation factor 4 gamma 1", "gene_name": "EIF4G1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62266-1", "protein_name": "Small ribosomal subunit protein uS12", "gene_name": "RPS23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46777-1", "protein_name": "Large ribosomal subunit protein uL18", "gene_name": "RPL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96Q15-1", "protein_name": "Serine/threonine-protein kinase SMG1", "gene_name": "SMG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62753-1", "protein_name": "Small ribosomal subunit protein eS6", "gene_name": "RPS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27635-1", "protein_name": "Large ribosomal subunit protein uL16", "gene_name": "RPL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62913-1", "protein_name": "Large ribosomal subunit protein uL5", "gene_name": "RPL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36578-1", "protein_name": "Large ribosomal subunit protein uL4", "gene_name": "RPL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HAU5-1", "protein_name": "Regulator of nonsense transcripts 2", "gene_name": "UPF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5S9-1", "protein_name": "RNA-binding protein 8A", "gene_name": "RBM8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15234-1", "protein_name": "Protein CASC3", "gene_name": "CASC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05388-1", "protein_name": "Large ribosomal subunit protein uL10", "gene_name": "RPLP0", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46779-1", "protein_name": "Large ribosomal subunit protein eL28", "gene_name": "RPL28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62857-1", "protein_name": "Small ribosomal subunit protein eS28", "gene_name": "RPS28", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPJ4-1", "protein_name": "Proline-rich nuclear receptor coactivator 2", "gene_name": "PNRC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15170-1", "protein_name": "Eukaryotic peptide chain release factor GTP-binding subunit ERF3A", "gene_name": "GSPT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62495-1", "protein_name": "Eukaryotic peptide chain release factor subunit 1", "gene_name": "ETF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61313-1", "protein_name": "Large ribosomal subunit protein eL15", "gene_name": "RPL15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62081-1", "protein_name": "Small ribosomal subunit protein eS7", "gene_name": "RPS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71UM5-1", "protein_name": "Ribosomal protein eS27-like", "gene_name": "RPS27L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30153-1", "protein_name": "Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform", "gene_name": "PPP2R1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67775-1", "protein_name": "Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform", "gene_name": "PPP2CA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92900-1", "protein_name": "Regulator of nonsense transcripts 1", "gene_name": "UPF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P18621", "url": "https://www.uniprot.org/uniprotkb/P18621" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.14742663", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 116 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "An eIF4AIII-containing complex required for mRNA localization and nonsense-mediated mRNA decay.", "journal": "Nature", "date": "2004", "authors": "Palacios IM, Gatfield D, St Johnston D, Izaurralde E", "reference": { "type": "PubMed", "id": "14973490", "url": "https://pubmed.ncbi.nlm.nih.gov/14973490" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P18621-1", "protein_name": "Large ribosomal subunit protein uL22", "gene_name": "RPL17", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H1J1-1", "protein_name": "Regulator of nonsense transcripts 3A", "gene_name": "UPF3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46776-1", "protein_name": "Large ribosomal subunit protein uL15", "gene_name": "RPL27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46782-1", "protein_name": "Small ribosomal subunit protein uS7", "gene_name": "RPS5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47914-1", "protein_name": "Large ribosomal subunit protein eL29", "gene_name": "RPL29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62244-1", "protein_name": "Small ribosomal subunit protein uS8", "gene_name": "RPS15A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22090-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 1", "gene_name": "RPS4Y1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P5R6-1", "protein_name": "Ribosomal protein eL22-like", "gene_name": "RPL22L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08708-1", "protein_name": "Small ribosomal subunit protein eS17", "gene_name": "RPS17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46783-1", "protein_name": "Small ribosomal subunit protein eS10", "gene_name": "RPS10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62917-1", "protein_name": "Large ribosomal subunit protein uL2", "gene_name": "RPL8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25398-1", "protein_name": "Small ribosomal subunit protein eS12", "gene_name": "RPS12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46781-1", "protein_name": "Small ribosomal subunit protein uS4", "gene_name": "RPS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62424-1", "protein_name": "Large ribosomal subunit protein eL8", "gene_name": "RPL7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62701-1", "protein_name": "Small ribosomal subunit protein eS4, X isoform", "gene_name": "RPS4X", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63220-1", "protein_name": "Small ribosomal subunit protein eS21", "gene_name": "RPS21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TD47-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 2", "gene_name": "RPS4Y2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11940-1", "protein_name": "Polyadenylate-binding protein 1", "gene_name": "PABPC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07020-1", "protein_name": "Large ribosomal subunit protein eL18", "gene_name": "RPL18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35268-1", "protein_name": "Large ribosomal subunit protein eL22", "gene_name": "RPL22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83881-1", "protein_name": "Large ribosomal subunit protein eL42", "gene_name": "RPL36A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61353-1", "protein_name": "Large ribosomal subunit protein eL27", "gene_name": "RPL27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNX3-1", "protein_name": "Ribosomal protein uL24-like", "gene_name": "RPL26L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02543-1", "protein_name": "Large ribosomal subunit protein eL20", "gene_name": "RPL18A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40429-1", "protein_name": "Large ribosomal subunit protein uL13", "gene_name": "RPL13A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63173-1", "protein_name": "Large ribosomal subunit protein eL38", "gene_name": "RPL38", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62910-1", "protein_name": "Large ribosomal subunit protein eL32", "gene_name": "RPL32", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39023-1", "protein_name": "Large ribosomal subunit protein uL3", "gene_name": "RPL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18077-1", "protein_name": "Large ribosomal subunit protein eL33", "gene_name": "RPL35A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61254-1", "protein_name": "Large ribosomal subunit protein uL24", "gene_name": "RPL26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84098-1", "protein_name": "Large ribosomal subunit protein eL19", "gene_name": "RPL19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62888-1", "protein_name": "Large ribosomal subunit protein eL30", "gene_name": "RPL30", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83731-1", "protein_name": "Large ribosomal subunit protein eL24", "gene_name": "RPL24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62899-1", "protein_name": "Large ribosomal subunit protein eL31", "gene_name": "RPL31", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62945-1", "protein_name": "Small ribosomal subunit protein eS32", "gene_name": "RPL41", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61927-1", "protein_name": "Large ribosomal subunit protein eL37", "gene_name": "RPL37", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42766-1", "protein_name": "Large ribosomal subunit protein uL29", "gene_name": "RPL35", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05387-1", "protein_name": "Large ribosomal subunit protein P2", "gene_name": "RPLP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92901-1", "protein_name": "Ribosomal protein uL3-like", "gene_name": "RPL3L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46778-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "RPL21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05386-1", "protein_name": "Large ribosomal subunit protein P1", "gene_name": "RPLP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49207-1", "protein_name": "Large ribosomal subunit protein eL34", "gene_name": "RPL34", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62891-1", "protein_name": "Large ribosomal subunit protein eL39", "gene_name": "RPL39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96L21-1", "protein_name": "Ribosomal protein uL16-like", "gene_name": "RPL10L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26373-1", "protein_name": "Large ribosomal subunit protein eL13", "gene_name": "RPL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9VHS8-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "CG7483", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q86US8-1", "protein_name": "Telomerase-binding protein EST1A", "gene_name": "SMG6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYD1-1", "protein_name": "Eukaryotic peptide chain release factor GTP-binding subunit ERF3B", "gene_name": "GSPT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60866-1", "protein_name": "Small ribosomal subunit protein uS10", "gene_name": "RPS20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969Q0-1", "protein_name": "Ribosomal protein eL42-like", "gene_name": "RPL36AL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61247-1", "protein_name": "Small ribosomal subunit protein eS1", "gene_name": "RPS3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62854-1", "protein_name": "Small ribosomal subunit protein eS26", "gene_name": "RPS26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62851-1", "protein_name": "Small ribosomal subunit protein eS25", "gene_name": "RPS25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08865-1", "protein_name": "Small ribosomal subunit protein uS2", "gene_name": "RPSA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62847-1", "protein_name": "Small ribosomal subunit protein eS24", "gene_name": "RPS24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62861-1", "protein_name": "Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein", "gene_name": "FAU", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62241-1", "protein_name": "Small ribosomal subunit protein eS8", "gene_name": "RPS8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62277-1", "protein_name": "Small ribosomal subunit protein uS15", "gene_name": "RPS13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39019-1", "protein_name": "Small ribosomal subunit protein eS19", "gene_name": "RPS19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92540-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG7", "gene_name": "SMG7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPR3-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG5", "gene_name": "SMG5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62269-1", "protein_name": "Small ribosomal subunit protein uS13", "gene_name": "RPS18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02878-1", "protein_name": "Large ribosomal subunit protein eL6", "gene_name": "RPL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62273-1", "protein_name": "Small ribosomal subunit protein uS14", "gene_name": "RPS29", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8ND04-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG8", "gene_name": "SMG8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPI6-1", "protein_name": "mRNA-decapping enzyme 1A", "gene_name": "DCP1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42677-1", "protein_name": "Small ribosomal subunit protein eS27", "gene_name": "RPS27", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38919-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "EIF4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61326-1", "protein_name": "Protein mago nashi homolog", "gene_name": "MAGOH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EH5-1", "protein_name": "Ribosomal protein eL39-like 2", "gene_name": "RPL39L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15287-1", "protein_name": "RNA-binding protein with serine-rich domain 1", "gene_name": "RNPS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0W8-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG9", "gene_name": "SMG9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62263-1", "protein_name": "Small ribosomal subunit protein uS11", "gene_name": "RPS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61513-1", "protein_name": "Large ribosomal subunit protein eL43", "gene_name": "RPL37A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18124-1", "protein_name": "Large ribosomal subunit protein uL30", "gene_name": "RPL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZI7-1", "protein_name": "Regulator of nonsense transcripts 3B", "gene_name": "UPF3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15880-1", "protein_name": "Small ribosomal subunit protein uS5", "gene_name": "RPS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62750-1", "protein_name": "Large ribosomal subunit protein uL23", "gene_name": "RPL23A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62280-1", "protein_name": "Small ribosomal subunit protein uS17", "gene_name": "RPS11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62249-1", "protein_name": "Small ribosomal subunit protein uS9", "gene_name": "RPS16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50914-1", "protein_name": "Large ribosomal subunit protein eL14", "gene_name": "RPL14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62906-1", "protein_name": "Large ribosomal subunit protein uL1", "gene_name": "RPL10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23396-1", "protein_name": "Small ribosomal subunit protein uS3", "gene_name": "RPS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63151-1", "protein_name": "Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform", "gene_name": "PPP2R2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A72-1", "protein_name": "Protein mago nashi homolog 2", "gene_name": "MAGOHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62841-1", "protein_name": "Small ribosomal subunit protein uS19", "gene_name": "RPS15", "tax_name": "Human" }, { "uniprot_canonical_ac": "C0HME6-1", "protein_name": "RPL36 alternative reading frame protein", "gene_name": "RPL36", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62829-1", "protein_name": "Large ribosomal subunit protein uL14", "gene_name": "RPL23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32969-1", "protein_name": "Large ribosomal subunit protein uL6", "gene_name": "RPL9P7; RPL9P8; RPL9P9; RPL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30050-1", "protein_name": "Large ribosomal subunit protein uL11", "gene_name": "RPL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q04637-1", "protein_name": "Eukaryotic translation initiation factor 4 gamma 1", "gene_name": "EIF4G1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62266-1", "protein_name": "Small ribosomal subunit protein uS12", "gene_name": "RPS23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46777-1", "protein_name": "Large ribosomal subunit protein uL18", "gene_name": "RPL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96Q15-1", "protein_name": "Serine/threonine-protein kinase SMG1", "gene_name": "SMG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62753-1", "protein_name": "Small ribosomal subunit protein eS6", "gene_name": "RPS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27635-1", "protein_name": "Large ribosomal subunit protein uL16", "gene_name": "RPL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62913-1", "protein_name": "Large ribosomal subunit protein uL5", "gene_name": "RPL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36578-1", "protein_name": "Large ribosomal subunit protein uL4", "gene_name": "RPL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HAU5-1", "protein_name": "Regulator of nonsense transcripts 2", "gene_name": "UPF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5S9-1", "protein_name": "RNA-binding protein 8A", "gene_name": "RBM8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15234-1", "protein_name": "Protein CASC3", "gene_name": "CASC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05388-1", "protein_name": "Large ribosomal subunit protein uL10", "gene_name": "RPLP0", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46779-1", "protein_name": "Large ribosomal subunit protein eL28", "gene_name": "RPL28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62857-1", "protein_name": "Small ribosomal subunit protein eS28", "gene_name": "RPS28", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPJ4-1", "protein_name": "Proline-rich nuclear receptor coactivator 2", "gene_name": "PNRC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15170-1", "protein_name": "Eukaryotic peptide chain release factor GTP-binding subunit ERF3A", "gene_name": "GSPT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62495-1", "protein_name": "Eukaryotic peptide chain release factor subunit 1", "gene_name": "ETF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61313-1", "protein_name": "Large ribosomal subunit protein eL15", "gene_name": "RPL15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62081-1", "protein_name": "Small ribosomal subunit protein eS7", "gene_name": "RPS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71UM5-1", "protein_name": "Ribosomal protein eS27-like", "gene_name": "RPS27L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30153-1", "protein_name": "Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform", "gene_name": "PPP2R1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67775-1", "protein_name": "Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform", "gene_name": "PPP2CA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92900-1", "protein_name": "Regulator of nonsense transcripts 1", "gene_name": "UPF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49028-1", "protein_name": "Protein mago nashi", "gene_name": "mago", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9V535-1", "protein_name": "RNA-binding protein 8A", "gene_name": "tsu", "tax_name": "Fruit fly" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P18621", "url": "https://www.uniprot.org/uniprotkb/P18621" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 150, "end_pos": 150, "sequence_org": "G", "sequence_mut": "S", "comment": "In allele eIF4AIII-19; homozygous oocytes are non-viable.", "evidence": [ { "database": "UniProtKB", "id": "Q9VHS8", "url": "https://www.uniprot.org/uniprotkb/Q9VHS8" }, { "database": "PubMed", "id": "14973490", "url": "https://pubmed.ncbi.nlm.nih.gov/14973490" } ], "uniprot_canonical_ac": "Q9VHS8-1" } ], "record_id": "pubmed.14973490", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 119 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": 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subunit protein uL15", "gene_name": "RPL27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46782-1", "protein_name": "Small ribosomal subunit protein uS7", "gene_name": "RPS5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47914-1", "protein_name": "Large ribosomal subunit protein eL29", "gene_name": "RPL29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62244-1", "protein_name": "Small ribosomal subunit protein uS8", "gene_name": "RPS15A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22090-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 1", "gene_name": "RPS4Y1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P5R6-1", "protein_name": "Ribosomal protein eL22-like", "gene_name": "RPL22L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08708-1", "protein_name": "Small ribosomal subunit protein eS17", "gene_name": "RPS17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46783-1", "protein_name": "Small ribosomal subunit protein eS10", "gene_name": "RPS10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62917-1", "protein_name": "Large ribosomal subunit protein uL2", "gene_name": "RPL8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25398-1", "protein_name": "Small ribosomal subunit protein eS12", "gene_name": "RPS12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46781-1", "protein_name": "Small ribosomal subunit protein uS4", "gene_name": "RPS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62424-1", "protein_name": "Large ribosomal subunit protein eL8", "gene_name": "RPL7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62701-1", "protein_name": "Small ribosomal subunit protein eS4, X isoform", "gene_name": "RPS4X", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63220-1", "protein_name": "Small ribosomal subunit protein eS21", "gene_name": "RPS21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TD47-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 2", "gene_name": "RPS4Y2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11940-1", "protein_name": "Polyadenylate-binding protein 1", "gene_name": "PABPC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07020-1", "protein_name": "Large ribosomal subunit protein eL18", "gene_name": "RPL18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35268-1", "protein_name": "Large ribosomal subunit protein eL22", "gene_name": "RPL22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83881-1", "protein_name": "Large ribosomal subunit protein eL42", "gene_name": "RPL36A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61353-1", "protein_name": "Large ribosomal subunit protein eL27", "gene_name": "RPL27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNX3-1", "protein_name": "Ribosomal protein uL24-like", "gene_name": "RPL26L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02543-1", "protein_name": "Large ribosomal subunit protein eL20", "gene_name": "RPL18A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40429-1", "protein_name": "Large ribosomal subunit protein uL13", "gene_name": "RPL13A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63173-1", "protein_name": "Large ribosomal subunit protein eL38", "gene_name": "RPL38", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62910-1", "protein_name": "Large ribosomal subunit protein eL32", "gene_name": "RPL32", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39023-1", "protein_name": "Large ribosomal subunit protein uL3", "gene_name": "RPL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18077-1", "protein_name": "Large ribosomal subunit protein eL33", "gene_name": "RPL35A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61254-1", "protein_name": "Large ribosomal subunit protein uL24", "gene_name": "RPL26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84098-1", "protein_name": "Large ribosomal subunit protein eL19", "gene_name": "RPL19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62888-1", "protein_name": "Large ribosomal subunit protein eL30", "gene_name": "RPL30", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83731-1", "protein_name": "Large ribosomal subunit protein eL24", "gene_name": "RPL24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62899-1", "protein_name": "Large ribosomal subunit protein eL31", "gene_name": "RPL31", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62945-1", "protein_name": "Small ribosomal subunit protein eS32", "gene_name": "RPL41", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61927-1", "protein_name": "Large ribosomal subunit protein eL37", "gene_name": "RPL37", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42766-1", "protein_name": "Large ribosomal subunit protein uL29", "gene_name": "RPL35", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05387-1", "protein_name": "Large ribosomal subunit protein P2", "gene_name": "RPLP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92901-1", "protein_name": "Ribosomal protein uL3-like", "gene_name": "RPL3L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46778-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "RPL21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05386-1", "protein_name": "Large ribosomal subunit protein P1", "gene_name": "RPLP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49207-1", "protein_name": "Large ribosomal subunit protein eL34", "gene_name": "RPL34", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62891-1", "protein_name": "Large ribosomal subunit protein eL39", "gene_name": "RPL39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96L21-1", "protein_name": "Ribosomal protein uL16-like", "gene_name": "RPL10L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26373-1", "protein_name": "Large ribosomal subunit protein eL13", "gene_name": "RPL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86US8-1", "protein_name": "Telomerase-binding protein EST1A", "gene_name": "SMG6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYD1-1", "protein_name": "Eukaryotic peptide chain release factor GTP-binding subunit ERF3B", "gene_name": "GSPT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60866-1", "protein_name": "Small ribosomal subunit protein uS10", "gene_name": "RPS20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969Q0-1", "protein_name": "Ribosomal protein eL42-like", "gene_name": "RPL36AL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61247-1", "protein_name": "Small ribosomal subunit protein eS1", "gene_name": "RPS3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62854-1", "protein_name": "Small ribosomal subunit protein eS26", "gene_name": "RPS26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62851-1", "protein_name": "Small ribosomal subunit protein eS25", "gene_name": "RPS25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08865-1", "protein_name": "Small ribosomal subunit protein uS2", "gene_name": "RPSA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62847-1", "protein_name": "Small ribosomal subunit protein eS24", "gene_name": "RPS24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62861-1", "protein_name": "Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein", "gene_name": "FAU", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62241-1", "protein_name": "Small ribosomal subunit protein eS8", "gene_name": "RPS8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62277-1", "protein_name": "Small ribosomal subunit protein uS15", "gene_name": "RPS13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39019-1", "protein_name": "Small ribosomal subunit protein eS19", "gene_name": "RPS19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92540-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG7", "gene_name": "SMG7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPR3-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG5", "gene_name": "SMG5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62269-1", "protein_name": "Small ribosomal subunit protein uS13", "gene_name": "RPS18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02878-1", "protein_name": "Large ribosomal subunit protein eL6", "gene_name": "RPL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62273-1", "protein_name": "Small ribosomal subunit protein uS14", "gene_name": "RPS29", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8ND04-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG8", "gene_name": "SMG8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPI6-1", "protein_name": "mRNA-decapping enzyme 1A", "gene_name": "DCP1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42677-1", "protein_name": "Small ribosomal subunit protein eS27", "gene_name": "RPS27", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38919-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "EIF4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61326-1", "protein_name": "Protein mago nashi homolog", "gene_name": "MAGOH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EH5-1", "protein_name": "Ribosomal protein eL39-like 2", "gene_name": "RPL39L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15287-1", "protein_name": "RNA-binding protein with serine-rich domain 1", "gene_name": "RNPS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0W8-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG9", "gene_name": "SMG9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62263-1", "protein_name": "Small ribosomal subunit protein uS11", "gene_name": "RPS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61513-1", "protein_name": "Large ribosomal subunit protein eL43", "gene_name": "RPL37A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18124-1", "protein_name": "Large ribosomal subunit protein uL30", "gene_name": "RPL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZI7-1", "protein_name": "Regulator of nonsense transcripts 3B", "gene_name": "UPF3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15880-1", "protein_name": "Small ribosomal subunit protein uS5", "gene_name": "RPS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62750-1", "protein_name": "Large ribosomal subunit protein uL23", "gene_name": "RPL23A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62280-1", "protein_name": "Small ribosomal subunit protein uS17", "gene_name": "RPS11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62249-1", "protein_name": "Small ribosomal subunit protein uS9", "gene_name": "RPS16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50914-1", "protein_name": "Large ribosomal subunit protein eL14", "gene_name": "RPL14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62906-1", "protein_name": "Large ribosomal subunit protein uL1", "gene_name": "RPL10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23396-1", "protein_name": "Small ribosomal subunit protein uS3", "gene_name": "RPS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63151-1", "protein_name": "Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform", "gene_name": "PPP2R2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A72-1", "protein_name": "Protein mago nashi homolog 2", "gene_name": "MAGOHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62841-1", "protein_name": "Small ribosomal subunit protein uS19", "gene_name": "RPS15", "tax_name": "Human" }, { "uniprot_canonical_ac": "C0HME6-1", "protein_name": "RPL36 alternative reading frame protein", "gene_name": "RPL36", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62829-1", "protein_name": "Large ribosomal subunit protein uL14", "gene_name": "RPL23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32969-1", "protein_name": "Large ribosomal subunit protein uL6", "gene_name": "RPL9P7; RPL9P8; RPL9P9; RPL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30050-1", "protein_name": "Large ribosomal subunit protein uL11", "gene_name": "RPL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q04637-1", "protein_name": "Eukaryotic translation initiation factor 4 gamma 1", "gene_name": "EIF4G1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62266-1", "protein_name": "Small ribosomal subunit protein uS12", "gene_name": "RPS23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46777-1", "protein_name": "Large ribosomal subunit protein uL18", "gene_name": "RPL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96Q15-1", "protein_name": "Serine/threonine-protein kinase SMG1", "gene_name": "SMG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62753-1", "protein_name": "Small ribosomal subunit protein eS6", "gene_name": "RPS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27635-1", "protein_name": "Large ribosomal subunit protein uL16", "gene_name": "RPL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62913-1", "protein_name": "Large ribosomal subunit protein uL5", "gene_name": "RPL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36578-1", "protein_name": "Large ribosomal subunit protein uL4", "gene_name": "RPL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HAU5-1", "protein_name": "Regulator of nonsense transcripts 2", "gene_name": "UPF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5S9-1", "protein_name": "RNA-binding protein 8A", "gene_name": "RBM8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15234-1", "protein_name": "Protein CASC3", "gene_name": "CASC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05388-1", "protein_name": "Large ribosomal subunit protein uL10", "gene_name": "RPLP0", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46779-1", "protein_name": "Large ribosomal subunit protein eL28", "gene_name": "RPL28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62857-1", "protein_name": "Small ribosomal subunit protein eS28", "gene_name": "RPS28", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPJ4-1", "protein_name": "Proline-rich nuclear receptor coactivator 2", "gene_name": "PNRC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15170-1", "protein_name": "Eukaryotic peptide chain release factor GTP-binding subunit ERF3A", "gene_name": "GSPT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62495-1", "protein_name": "Eukaryotic peptide chain release factor subunit 1", "gene_name": "ETF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61313-1", "protein_name": "Large ribosomal subunit protein eL15", "gene_name": "RPL15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62081-1", "protein_name": "Small ribosomal subunit protein eS7", "gene_name": "RPS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71UM5-1", "protein_name": "Ribosomal protein eS27-like", "gene_name": "RPS27L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30153-1", "protein_name": "Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform", "gene_name": "PPP2R1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67775-1", "protein_name": "Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform", "gene_name": "PPP2CA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92900-1", "protein_name": "Regulator of nonsense transcripts 1", "gene_name": "UPF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P18621", "url": "https://www.uniprot.org/uniprotkb/P18621" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.15034551", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 116 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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"count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Identification and characterization of phosphoseryl-tRNA[Ser]Sec kinase.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2004", "authors": "Carlson BA, Xu XM, Kryukov GV, Rao M, Berry MJ, Gladyshev VN, Hatfield DL", "reference": { "type": "PubMed", "id": "15317934", "url": "https://pubmed.ncbi.nlm.nih.gov/15317934" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P18621-1", "protein_name": "Large ribosomal subunit protein uL22", "gene_name": "RPL17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46776-1", "protein_name": "Large ribosomal subunit protein uL15", "gene_name": "RPL27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46782-1", "protein_name": "Small ribosomal subunit protein uS7", "gene_name": "RPS5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57772-1", "protein_name": "Selenocysteine-specific elongation factor", "gene_name": "EEFSEC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47914-1", "protein_name": "Large ribosomal subunit protein eL29", "gene_name": "RPL29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62244-1", "protein_name": "Small ribosomal subunit protein uS8", "gene_name": "RPS15A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22090-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 1", "gene_name": "RPS4Y1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P5R6-1", "protein_name": "Ribosomal protein eL22-like", "gene_name": "RPL22L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08708-1", "protein_name": "Small ribosomal subunit protein eS17", "gene_name": "RPS17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46783-1", "protein_name": "Small ribosomal subunit protein eS10", "gene_name": "RPS10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62917-1", "protein_name": "Large ribosomal subunit protein uL2", "gene_name": "RPL8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25398-1", "protein_name": "Small ribosomal subunit protein eS12", "gene_name": "RPS12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46781-1", "protein_name": "Small ribosomal subunit protein uS4", "gene_name": "RPS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62424-1", "protein_name": "Large ribosomal subunit protein eL8", "gene_name": "RPL7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62701-1", "protein_name": "Small ribosomal subunit protein eS4, X isoform", "gene_name": "RPS4X", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63220-1", "protein_name": "Small ribosomal subunit protein eS21", "gene_name": "RPS21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TD47-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 2", "gene_name": "RPS4Y2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49591-1", "protein_name": "Serine--tRNA ligase, cytoplasmic", "gene_name": "SARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07020-1", "protein_name": "Large ribosomal subunit protein eL18", "gene_name": "RPL18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35268-1", "protein_name": "Large ribosomal subunit protein eL22", "gene_name": "RPL22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83881-1", "protein_name": "Large ribosomal subunit protein eL42", "gene_name": "RPL36A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61353-1", "protein_name": "Large ribosomal subunit protein eL27", "gene_name": "RPL27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNX3-1", "protein_name": "Ribosomal protein uL24-like", "gene_name": "RPL26L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02543-1", "protein_name": "Large ribosomal subunit protein eL20", "gene_name": "RPL18A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40429-1", "protein_name": "Large ribosomal subunit protein uL13", "gene_name": "RPL13A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63173-1", "protein_name": "Large ribosomal subunit protein eL38", "gene_name": "RPL38", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62910-1", "protein_name": "Large ribosomal subunit protein eL32", "gene_name": "RPL32", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39023-1", "protein_name": "Large ribosomal subunit protein uL3", "gene_name": "RPL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18077-1", "protein_name": "Large ribosomal subunit protein eL33", "gene_name": "RPL35A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61254-1", "protein_name": "Large ribosomal subunit protein uL24", "gene_name": "RPL26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84098-1", "protein_name": "Large ribosomal subunit protein eL19", "gene_name": "RPL19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62888-1", "protein_name": "Large ribosomal subunit protein eL30", "gene_name": "RPL30", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83731-1", "protein_name": "Large ribosomal subunit protein eL24", "gene_name": "RPL24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62899-1", "protein_name": "Large ribosomal subunit protein eL31", "gene_name": "RPL31", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62945-1", "protein_name": "Small ribosomal subunit protein eS32", "gene_name": "RPL41", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61927-1", "protein_name": "Large ribosomal subunit protein eL37", "gene_name": "RPL37", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42766-1", "protein_name": "Large ribosomal subunit protein uL29", "gene_name": "RPL35", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05387-1", "protein_name": "Large ribosomal subunit protein P2", "gene_name": "RPLP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92901-1", "protein_name": "Ribosomal protein uL3-like", "gene_name": "RPL3L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46778-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "RPL21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05386-1", "protein_name": "Large ribosomal subunit protein P1", "gene_name": "RPLP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49207-1", "protein_name": "Large ribosomal subunit protein eL34", "gene_name": "RPL34", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62891-1", "protein_name": "Large ribosomal subunit protein eL39", "gene_name": "RPL39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96L21-1", "protein_name": "Ribosomal protein uL16-like", "gene_name": "RPL10L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26373-1", "protein_name": "Large ribosomal subunit protein eL13", "gene_name": "RPL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60866-1", "protein_name": "Small ribosomal subunit protein uS10", "gene_name": "RPS20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96T21-1", "protein_name": "Selenocysteine insertion sequence-binding protein 2", "gene_name": "SECISBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969Q0-1", "protein_name": "Ribosomal protein eL42-like", "gene_name": "RPL36AL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61247-1", "protein_name": "Small ribosomal subunit protein eS1", "gene_name": "RPS3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62854-1", "protein_name": "Small ribosomal subunit protein eS26", "gene_name": "RPS26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62851-1", "protein_name": "Small ribosomal subunit protein eS25", "gene_name": "RPS25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08865-1", "protein_name": "Small ribosomal subunit protein uS2", "gene_name": "RPSA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62847-1", "protein_name": "Small ribosomal subunit protein eS24", "gene_name": "RPS24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62861-1", "protein_name": "Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein", "gene_name": "FAU", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62241-1", "protein_name": "Small ribosomal subunit protein eS8", "gene_name": "RPS8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62277-1", "protein_name": "Small ribosomal subunit protein uS15", "gene_name": "RPS13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39019-1", "protein_name": "Small ribosomal subunit protein eS19", "gene_name": "RPS19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62269-1", "protein_name": "Small ribosomal subunit protein uS13", "gene_name": "RPS18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02878-1", "protein_name": "Large ribosomal subunit protein eL6", "gene_name": "RPL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62273-1", "protein_name": "Small ribosomal subunit protein uS14", "gene_name": "RPS29", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HD40-1", "protein_name": "O-phosphoseryl-tRNA(Sec) selenium transferase", "gene_name": "SEPSECS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42677-1", "protein_name": "Small ribosomal subunit protein eS27", "gene_name": "RPS27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EH5-1", "protein_name": "Ribosomal protein eL39-like 2", "gene_name": "RPL39L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62263-1", "protein_name": "Small ribosomal subunit protein uS11", "gene_name": "RPS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61513-1", "protein_name": "Large ribosomal subunit protein eL43", "gene_name": "RPL37A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18124-1", "protein_name": "Large ribosomal subunit protein uL30", "gene_name": "RPL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8BP74-1", "protein_name": "L-seryl-tRNA(Sec) kinase", "gene_name": "Pstk", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P15880-1", "protein_name": "Small ribosomal subunit protein uS5", "gene_name": "RPS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62750-1", "protein_name": "Large ribosomal subunit protein uL23", "gene_name": "RPL23A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62280-1", "protein_name": "Small ribosomal subunit protein uS17", "gene_name": "RPS11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62249-1", "protein_name": "Small ribosomal subunit protein uS9", "gene_name": "RPS16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50914-1", "protein_name": "Large ribosomal subunit protein eL14", "gene_name": "RPL14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62906-1", "protein_name": "Large ribosomal subunit protein uL1", "gene_name": "RPL10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23396-1", "protein_name": "Small ribosomal subunit protein uS3", "gene_name": "RPS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62841-1", "protein_name": "Small ribosomal subunit protein uS19", "gene_name": "RPS15", "tax_name": "Human" }, { "uniprot_canonical_ac": "C0HME6-1", "protein_name": "RPL36 alternative reading frame protein", "gene_name": "RPL36", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62829-1", "protein_name": "Large ribosomal subunit protein uL14", "gene_name": "RPL23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32969-1", "protein_name": "Large ribosomal subunit protein uL6", "gene_name": "RPL9P7; RPL9P8; RPL9P9; RPL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30050-1", "protein_name": "Large ribosomal subunit protein uL11", "gene_name": "RPL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62266-1", "protein_name": "Small ribosomal subunit protein uS12", "gene_name": "RPS23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46777-1", "protein_name": "Large ribosomal subunit protein uL18", "gene_name": "RPL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62753-1", "protein_name": "Small ribosomal subunit protein eS6", "gene_name": "RPS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99611-1", "protein_name": "Selenide, water dikinase 2", "gene_name": "SEPHS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IV42-1", "protein_name": "L-seryl-tRNA(Sec) kinase", "gene_name": "PSTK", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27635-1", "protein_name": "Large ribosomal subunit protein uL16", "gene_name": "RPL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62913-1", "protein_name": "Large ribosomal subunit protein uL5", "gene_name": "RPL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36578-1", "protein_name": "Large ribosomal subunit protein uL4", "gene_name": "RPL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05388-1", "protein_name": "Large ribosomal subunit protein uL10", "gene_name": "RPLP0", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46779-1", "protein_name": "Large ribosomal subunit protein eL28", "gene_name": "RPL28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62857-1", "protein_name": "Small ribosomal subunit protein eS28", "gene_name": "RPS28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61313-1", "protein_name": "Large ribosomal subunit protein eL15", "gene_name": "RPL15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62081-1", "protein_name": "Small ribosomal subunit protein eS7", "gene_name": "RPS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71UM5-1", "protein_name": "Ribosomal protein eS27-like", "gene_name": "RPS27L", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P18621", "url": "https://www.uniprot.org/uniprotkb/P18621" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.15317934", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 95 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Selenophosphate synthetase genes from lung adenocarcinoma cells: Sps1 for recycling L-selenocysteine and Sps2 for selenite assimilation.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2004", "authors": "Tamura T, Yamamoto S, Takahata M, Sakaguchi H, Tanaka H, Stadtman TC, Inagaki K", "reference": { "type": "PubMed", "id": "15534230", "url": "https://pubmed.ncbi.nlm.nih.gov/15534230" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P18621-1", "protein_name": "Large ribosomal subunit protein uL22", "gene_name": "RPL17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46776-1", "protein_name": "Large ribosomal subunit protein uL15", "gene_name": "RPL27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46782-1", "protein_name": "Small ribosomal subunit protein uS7", "gene_name": "RPS5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57772-1", "protein_name": "Selenocysteine-specific elongation factor", "gene_name": "EEFSEC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47914-1", "protein_name": "Large ribosomal subunit protein eL29", "gene_name": "RPL29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62244-1", "protein_name": "Small ribosomal subunit protein uS8", "gene_name": "RPS15A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22090-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 1", "gene_name": "RPS4Y1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P5R6-1", "protein_name": "Ribosomal protein eL22-like", "gene_name": "RPL22L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08708-1", "protein_name": "Small ribosomal subunit protein eS17", "gene_name": "RPS17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46783-1", "protein_name": "Small ribosomal subunit protein eS10", "gene_name": "RPS10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62917-1", "protein_name": "Large ribosomal subunit protein uL2", "gene_name": "RPL8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25398-1", "protein_name": "Small ribosomal subunit protein eS12", "gene_name": "RPS12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46781-1", "protein_name": "Small ribosomal subunit protein uS4", "gene_name": "RPS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62424-1", "protein_name": "Large ribosomal subunit protein eL8", "gene_name": "RPL7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62701-1", "protein_name": "Small ribosomal subunit protein eS4, X isoform", "gene_name": "RPS4X", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63220-1", "protein_name": "Small ribosomal subunit protein eS21", "gene_name": "RPS21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TD47-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 2", "gene_name": "RPS4Y2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49591-1", "protein_name": "Serine--tRNA ligase, cytoplasmic", "gene_name": "SARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07020-1", "protein_name": "Large ribosomal subunit protein eL18", "gene_name": "RPL18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35268-1", "protein_name": "Large ribosomal subunit protein eL22", "gene_name": "RPL22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83881-1", "protein_name": "Large ribosomal subunit protein eL42", "gene_name": "RPL36A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61353-1", "protein_name": "Large ribosomal subunit protein eL27", "gene_name": "RPL27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNX3-1", "protein_name": "Ribosomal protein uL24-like", "gene_name": "RPL26L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02543-1", "protein_name": "Large ribosomal subunit protein eL20", "gene_name": "RPL18A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40429-1", "protein_name": "Large ribosomal subunit protein uL13", "gene_name": "RPL13A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63173-1", "protein_name": "Large ribosomal subunit protein eL38", "gene_name": "RPL38", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62910-1", "protein_name": "Large ribosomal subunit protein eL32", "gene_name": "RPL32", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39023-1", "protein_name": "Large ribosomal subunit protein uL3", "gene_name": "RPL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18077-1", "protein_name": "Large ribosomal subunit protein eL33", "gene_name": "RPL35A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61254-1", "protein_name": "Large ribosomal subunit protein uL24", "gene_name": "RPL26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84098-1", "protein_name": "Large ribosomal subunit protein eL19", "gene_name": "RPL19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62888-1", "protein_name": "Large ribosomal subunit protein eL30", "gene_name": "RPL30", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83731-1", "protein_name": "Large ribosomal subunit protein eL24", "gene_name": "RPL24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62899-1", "protein_name": "Large ribosomal subunit protein eL31", "gene_name": "RPL31", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62945-1", "protein_name": "Small ribosomal subunit protein eS32", "gene_name": "RPL41", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61927-1", "protein_name": "Large ribosomal subunit protein eL37", "gene_name": "RPL37", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42766-1", "protein_name": "Large ribosomal subunit protein uL29", "gene_name": "RPL35", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05387-1", "protein_name": "Large ribosomal subunit protein P2", "gene_name": "RPLP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92901-1", "protein_name": "Ribosomal protein uL3-like", "gene_name": "RPL3L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46778-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "RPL21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05386-1", "protein_name": "Large ribosomal subunit protein P1", "gene_name": "RPLP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49207-1", "protein_name": "Large ribosomal subunit protein eL34", "gene_name": "RPL34", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62891-1", "protein_name": "Large ribosomal subunit protein eL39", "gene_name": "RPL39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96L21-1", "protein_name": "Ribosomal protein uL16-like", "gene_name": "RPL10L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26373-1", "protein_name": "Large ribosomal subunit protein eL13", "gene_name": "RPL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60866-1", "protein_name": "Small ribosomal subunit protein uS10", "gene_name": "RPS20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96T21-1", "protein_name": "Selenocysteine insertion sequence-binding protein 2", "gene_name": "SECISBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969Q0-1", "protein_name": "Ribosomal protein eL42-like", "gene_name": "RPL36AL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61247-1", "protein_name": "Small ribosomal subunit protein eS1", "gene_name": "RPS3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62854-1", "protein_name": "Small ribosomal subunit protein eS26", "gene_name": "RPS26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62851-1", "protein_name": "Small ribosomal subunit protein eS25", "gene_name": "RPS25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08865-1", "protein_name": "Small ribosomal subunit protein uS2", "gene_name": "RPSA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62847-1", "protein_name": "Small ribosomal subunit protein eS24", "gene_name": "RPS24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62861-1", "protein_name": "Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein", "gene_name": "FAU", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62241-1", "protein_name": "Small ribosomal subunit protein eS8", "gene_name": "RPS8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62277-1", "protein_name": "Small ribosomal subunit protein uS15", "gene_name": "RPS13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39019-1", "protein_name": "Small ribosomal subunit protein eS19", "gene_name": "RPS19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62269-1", "protein_name": "Small ribosomal subunit protein uS13", "gene_name": "RPS18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02878-1", "protein_name": "Large ribosomal subunit protein eL6", "gene_name": "RPL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62273-1", "protein_name": "Small ribosomal subunit protein uS14", "gene_name": "RPS29", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HD40-1", "protein_name": "O-phosphoseryl-tRNA(Sec) selenium transferase", "gene_name": "SEPSECS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42677-1", "protein_name": "Small ribosomal subunit protein eS27", "gene_name": "RPS27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EH5-1", "protein_name": "Ribosomal protein eL39-like 2", "gene_name": "RPL39L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62263-1", "protein_name": "Small ribosomal subunit protein uS11", "gene_name": "RPS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61513-1", "protein_name": "Large ribosomal subunit protein eL43", "gene_name": "RPL37A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18124-1", "protein_name": "Large ribosomal subunit protein uL30", "gene_name": "RPL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15880-1", "protein_name": "Small ribosomal subunit protein uS5", "gene_name": "RPS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62750-1", "protein_name": "Large ribosomal subunit protein uL23", "gene_name": "RPL23A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62280-1", "protein_name": "Small ribosomal subunit protein uS17", "gene_name": "RPS11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62249-1", "protein_name": "Small ribosomal subunit protein uS9", "gene_name": "RPS16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50914-1", "protein_name": "Large ribosomal subunit protein eL14", "gene_name": "RPL14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62906-1", "protein_name": "Large ribosomal subunit protein uL1", "gene_name": "RPL10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23396-1", "protein_name": "Small ribosomal subunit protein uS3", "gene_name": "RPS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62841-1", "protein_name": "Small ribosomal subunit protein uS19", "gene_name": "RPS15", "tax_name": "Human" }, { "uniprot_canonical_ac": "C0HME6-1", "protein_name": "RPL36 alternative reading frame protein", "gene_name": "RPL36", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62829-1", "protein_name": "Large ribosomal subunit protein uL14", "gene_name": "RPL23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32969-1", "protein_name": "Large ribosomal subunit protein uL6", "gene_name": "RPL9P7; RPL9P8; RPL9P9; RPL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30050-1", "protein_name": "Large ribosomal subunit protein uL11", "gene_name": "RPL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62266-1", "protein_name": "Small ribosomal subunit protein uS12", "gene_name": "RPS23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46777-1", "protein_name": "Large ribosomal subunit protein uL18", "gene_name": "RPL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62753-1", "protein_name": "Small ribosomal subunit protein eS6", "gene_name": "RPS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99611-1", "protein_name": "Selenide, water dikinase 2", "gene_name": "SEPHS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49903-1", "protein_name": "Zincore component SEPHS1", "gene_name": "SEPHS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IV42-1", "protein_name": "L-seryl-tRNA(Sec) kinase", "gene_name": "PSTK", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27635-1", "protein_name": "Large ribosomal subunit protein uL16", "gene_name": "RPL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62913-1", "protein_name": "Large ribosomal subunit protein uL5", "gene_name": "RPL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36578-1", "protein_name": "Large ribosomal subunit protein uL4", "gene_name": "RPL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05388-1", "protein_name": "Large ribosomal subunit protein uL10", "gene_name": "RPLP0", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46779-1", "protein_name": "Large ribosomal subunit protein eL28", "gene_name": "RPL28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62857-1", "protein_name": "Small ribosomal subunit protein eS28", "gene_name": "RPS28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61313-1", "protein_name": "Large ribosomal subunit protein eL15", "gene_name": "RPL15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62081-1", "protein_name": "Small ribosomal subunit protein eS7", "gene_name": "RPS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71UM5-1", "protein_name": "Ribosomal protein eS27-like", "gene_name": "RPS27L", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P18621", "url": "https://www.uniprot.org/uniprotkb/P18621" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 60, "end_pos": 60, "sequence_org": "U", "sequence_mut": "C", "comment": "Does not affect the selenophosphate synthase activity.", "evidence": [ { "database": "UniProtKB", "id": "Q99611", "url": "https://www.uniprot.org/uniprotkb/Q99611" }, { "database": "PubMed", "id": "15534230", "url": "https://pubmed.ncbi.nlm.nih.gov/15534230" } ], "uniprot_canonical_ac": "Q99611-1" } ], "record_id": "pubmed.15534230", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 95 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "SMG7 acts as a molecular link between mRNA surveillance and mRNA decay.", "journal": "Molecular cell", "date": "2004", "authors": "Unterholzner L, Izaurralde E", "reference": { "type": "PubMed", "id": "15546618", "url": "https://pubmed.ncbi.nlm.nih.gov/15546618" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P18621-1", "protein_name": "Large ribosomal subunit protein uL22", "gene_name": "RPL17", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H1J1-1", "protein_name": "Regulator of nonsense transcripts 3A", "gene_name": "UPF3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46776-1", "protein_name": "Large ribosomal subunit protein uL15", "gene_name": "RPL27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46782-1", "protein_name": "Small ribosomal subunit protein uS7", "gene_name": "RPS5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47914-1", "protein_name": "Large ribosomal subunit protein eL29", "gene_name": "RPL29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62244-1", "protein_name": "Small ribosomal subunit protein uS8", "gene_name": "RPS15A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22090-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 1", "gene_name": "RPS4Y1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P5R6-1", "protein_name": "Ribosomal protein eL22-like", "gene_name": "RPL22L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08708-1", "protein_name": "Small ribosomal subunit protein eS17", "gene_name": "RPS17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46783-1", "protein_name": "Small ribosomal subunit protein eS10", "gene_name": "RPS10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62917-1", "protein_name": "Large ribosomal subunit protein uL2", "gene_name": "RPL8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25398-1", "protein_name": "Small ribosomal subunit protein eS12", "gene_name": "RPS12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46781-1", "protein_name": "Small ribosomal subunit protein uS4", "gene_name": "RPS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62424-1", "protein_name": "Large ribosomal subunit protein eL8", "gene_name": "RPL7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62701-1", "protein_name": "Small ribosomal subunit protein eS4, X isoform", "gene_name": "RPS4X", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63220-1", "protein_name": "Small ribosomal subunit protein eS21", "gene_name": "RPS21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TD47-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 2", "gene_name": "RPS4Y2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11940-1", "protein_name": "Polyadenylate-binding protein 1", "gene_name": "PABPC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07020-1", "protein_name": "Large ribosomal subunit protein eL18", "gene_name": "RPL18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35268-1", "protein_name": "Large ribosomal subunit protein eL22", "gene_name": "RPL22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83881-1", "protein_name": "Large ribosomal subunit protein eL42", "gene_name": "RPL36A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61353-1", "protein_name": "Large ribosomal subunit protein eL27", "gene_name": "RPL27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNX3-1", "protein_name": "Ribosomal protein uL24-like", "gene_name": "RPL26L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02543-1", "protein_name": "Large ribosomal subunit protein eL20", "gene_name": "RPL18A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40429-1", "protein_name": "Large ribosomal subunit protein uL13", "gene_name": "RPL13A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63173-1", "protein_name": "Large ribosomal subunit protein eL38", "gene_name": "RPL38", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62910-1", "protein_name": "Large ribosomal subunit protein eL32", "gene_name": "RPL32", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39023-1", "protein_name": "Large ribosomal subunit protein uL3", "gene_name": "RPL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18077-1", "protein_name": "Large ribosomal subunit protein eL33", "gene_name": "RPL35A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61254-1", "protein_name": "Large ribosomal subunit protein uL24", "gene_name": "RPL26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84098-1", "protein_name": "Large ribosomal subunit protein eL19", "gene_name": "RPL19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62888-1", "protein_name": "Large ribosomal subunit protein eL30", "gene_name": "RPL30", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83731-1", "protein_name": "Large ribosomal subunit protein eL24", "gene_name": "RPL24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62899-1", "protein_name": "Large ribosomal subunit protein eL31", "gene_name": "RPL31", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62945-1", "protein_name": "Small ribosomal subunit protein eS32", "gene_name": "RPL41", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61927-1", "protein_name": "Large ribosomal subunit protein eL37", "gene_name": "RPL37", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42766-1", "protein_name": "Large ribosomal subunit protein uL29", "gene_name": "RPL35", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05387-1", "protein_name": "Large ribosomal subunit protein P2", "gene_name": "RPLP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92901-1", "protein_name": "Ribosomal protein uL3-like", "gene_name": "RPL3L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46778-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "RPL21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05386-1", "protein_name": "Large ribosomal subunit protein P1", "gene_name": "RPLP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49207-1", "protein_name": "Large ribosomal subunit protein eL34", "gene_name": "RPL34", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62891-1", "protein_name": "Large ribosomal subunit protein eL39", "gene_name": "RPL39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96L21-1", "protein_name": "Ribosomal protein uL16-like", "gene_name": "RPL10L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26373-1", "protein_name": "Large ribosomal subunit protein eL13", "gene_name": "RPL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86US8-1", "protein_name": "Telomerase-binding protein EST1A", "gene_name": "SMG6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYD1-1", "protein_name": "Eukaryotic peptide chain release factor GTP-binding subunit ERF3B", "gene_name": "GSPT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60866-1", "protein_name": "Small ribosomal subunit protein uS10", "gene_name": "RPS20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969Q0-1", "protein_name": "Ribosomal protein eL42-like", "gene_name": "RPL36AL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61247-1", "protein_name": "Small ribosomal subunit protein eS1", "gene_name": "RPS3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62854-1", "protein_name": "Small ribosomal subunit protein eS26", "gene_name": "RPS26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62851-1", "protein_name": "Small ribosomal subunit protein eS25", "gene_name": "RPS25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08865-1", "protein_name": "Small ribosomal subunit protein uS2", "gene_name": "RPSA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62847-1", "protein_name": "Small ribosomal subunit protein eS24", "gene_name": "RPS24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62861-1", "protein_name": "Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein", "gene_name": "FAU", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62241-1", "protein_name": "Small ribosomal subunit protein eS8", "gene_name": "RPS8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62277-1", "protein_name": "Small ribosomal subunit protein uS15", "gene_name": "RPS13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39019-1", "protein_name": "Small ribosomal subunit protein eS19", "gene_name": "RPS19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92540-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG7", "gene_name": "SMG7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPR3-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG5", "gene_name": "SMG5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62269-1", "protein_name": "Small ribosomal subunit protein uS13", "gene_name": "RPS18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02878-1", "protein_name": "Large ribosomal subunit protein eL6", "gene_name": "RPL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62273-1", "protein_name": "Small ribosomal subunit protein uS14", "gene_name": "RPS29", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8ND04-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG8", "gene_name": "SMG8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPI6-1", "protein_name": "mRNA-decapping enzyme 1A", "gene_name": "DCP1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42677-1", "protein_name": "Small ribosomal subunit protein eS27", "gene_name": "RPS27", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38919-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "EIF4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61326-1", "protein_name": "Protein mago nashi homolog", "gene_name": "MAGOH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EH5-1", "protein_name": "Ribosomal protein eL39-like 2", "gene_name": "RPL39L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15287-1", "protein_name": "RNA-binding protein with serine-rich domain 1", "gene_name": "RNPS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0W8-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG9", "gene_name": "SMG9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62263-1", "protein_name": "Small ribosomal subunit protein uS11", "gene_name": "RPS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61513-1", "protein_name": "Large ribosomal subunit protein eL43", "gene_name": "RPL37A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18124-1", "protein_name": "Large ribosomal subunit protein uL30", "gene_name": "RPL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZI7-1", "protein_name": "Regulator of nonsense transcripts 3B", "gene_name": "UPF3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15880-1", "protein_name": "Small ribosomal subunit protein uS5", "gene_name": "RPS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62750-1", "protein_name": "Large ribosomal subunit protein uL23", "gene_name": "RPL23A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62280-1", "protein_name": "Small ribosomal subunit protein uS17", "gene_name": "RPS11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62249-1", "protein_name": "Small ribosomal subunit protein uS9", "gene_name": "RPS16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50914-1", "protein_name": "Large ribosomal subunit protein eL14", "gene_name": "RPL14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62906-1", "protein_name": "Large ribosomal subunit protein uL1", "gene_name": "RPL10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23396-1", "protein_name": "Small ribosomal subunit protein uS3", "gene_name": "RPS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63151-1", "protein_name": "Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform", "gene_name": "PPP2R2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A72-1", "protein_name": "Protein mago nashi homolog 2", "gene_name": "MAGOHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62841-1", "protein_name": "Small ribosomal subunit protein uS19", "gene_name": "RPS15", "tax_name": "Human" }, { "uniprot_canonical_ac": "C0HME6-1", "protein_name": "RPL36 alternative reading frame protein", "gene_name": "RPL36", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62829-1", "protein_name": "Large ribosomal subunit protein uL14", "gene_name": "RPL23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32969-1", "protein_name": "Large ribosomal subunit protein uL6", "gene_name": "RPL9P7; RPL9P8; RPL9P9; RPL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30050-1", "protein_name": "Large ribosomal subunit protein uL11", "gene_name": "RPL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q04637-1", "protein_name": "Eukaryotic translation initiation factor 4 gamma 1", "gene_name": "EIF4G1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62266-1", "protein_name": "Small ribosomal subunit protein uS12", "gene_name": "RPS23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46777-1", "protein_name": "Large ribosomal subunit protein uL18", "gene_name": "RPL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96Q15-1", "protein_name": "Serine/threonine-protein kinase SMG1", "gene_name": "SMG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62753-1", "protein_name": "Small ribosomal subunit protein eS6", "gene_name": "RPS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27635-1", "protein_name": "Large ribosomal subunit protein uL16", "gene_name": "RPL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62913-1", "protein_name": "Large ribosomal subunit protein uL5", "gene_name": "RPL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36578-1", "protein_name": "Large ribosomal subunit protein uL4", "gene_name": "RPL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HAU5-1", "protein_name": "Regulator of nonsense transcripts 2", "gene_name": "UPF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5S9-1", "protein_name": "RNA-binding protein 8A", "gene_name": "RBM8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15234-1", "protein_name": "Protein CASC3", "gene_name": "CASC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05388-1", "protein_name": "Large ribosomal subunit protein uL10", "gene_name": "RPLP0", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46779-1", "protein_name": "Large ribosomal subunit protein eL28", "gene_name": "RPL28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62857-1", "protein_name": "Small ribosomal subunit protein eS28", "gene_name": "RPS28", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPJ4-1", "protein_name": "Proline-rich nuclear receptor coactivator 2", "gene_name": "PNRC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15170-1", "protein_name": "Eukaryotic peptide chain release factor GTP-binding subunit ERF3A", "gene_name": "GSPT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62495-1", "protein_name": "Eukaryotic peptide chain release factor subunit 1", "gene_name": "ETF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61313-1", "protein_name": "Large ribosomal subunit protein eL15", "gene_name": "RPL15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62081-1", "protein_name": "Small ribosomal subunit protein eS7", "gene_name": "RPS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71UM5-1", "protein_name": "Ribosomal protein eS27-like", "gene_name": "RPS27L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30153-1", "protein_name": "Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform", "gene_name": "PPP2R1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67775-1", "protein_name": "Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform", "gene_name": "PPP2CA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92900-1", "protein_name": "Regulator of nonsense transcripts 1", "gene_name": "UPF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P18621", "url": "https://www.uniprot.org/uniprotkb/P18621" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.15546618", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 116 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "SMG7 is a 14-3-3-like adaptor in the nonsense-mediated mRNA decay pathway.", "journal": "Molecular cell", "date": "2005", "authors": "Fukuhara N, Ebert J, Unterholzner L, Lindner D, Izaurralde E, Conti E", "reference": { "type": "PubMed", "id": "15721257", "url": "https://pubmed.ncbi.nlm.nih.gov/15721257" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P18621-1", "protein_name": "Large ribosomal subunit protein uL22", "gene_name": "RPL17", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H1J1-1", "protein_name": "Regulator of nonsense transcripts 3A", "gene_name": "UPF3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46776-1", "protein_name": "Large ribosomal subunit protein uL15", "gene_name": "RPL27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46782-1", "protein_name": "Small ribosomal subunit protein uS7", "gene_name": "RPS5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47914-1", "protein_name": "Large ribosomal subunit protein eL29", "gene_name": "RPL29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62244-1", "protein_name": "Small ribosomal subunit protein uS8", "gene_name": "RPS15A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22090-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 1", "gene_name": "RPS4Y1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P5R6-1", "protein_name": "Ribosomal protein eL22-like", "gene_name": "RPL22L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08708-1", "protein_name": "Small ribosomal subunit protein eS17", "gene_name": "RPS17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46783-1", "protein_name": "Small ribosomal subunit protein eS10", "gene_name": "RPS10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62917-1", "protein_name": "Large ribosomal subunit protein uL2", "gene_name": "RPL8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25398-1", "protein_name": "Small ribosomal subunit protein eS12", "gene_name": "RPS12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46781-1", "protein_name": "Small ribosomal subunit protein uS4", "gene_name": "RPS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62424-1", "protein_name": "Large ribosomal subunit protein eL8", "gene_name": "RPL7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62701-1", "protein_name": "Small ribosomal subunit protein eS4, X isoform", "gene_name": "RPS4X", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63220-1", "protein_name": "Small ribosomal subunit protein eS21", "gene_name": "RPS21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TD47-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 2", "gene_name": "RPS4Y2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11940-1", "protein_name": "Polyadenylate-binding protein 1", "gene_name": "PABPC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07020-1", "protein_name": "Large ribosomal subunit protein eL18", "gene_name": "RPL18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35268-1", "protein_name": "Large ribosomal subunit protein eL22", "gene_name": "RPL22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83881-1", "protein_name": "Large ribosomal subunit protein eL42", "gene_name": "RPL36A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61353-1", "protein_name": "Large ribosomal subunit protein eL27", "gene_name": "RPL27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNX3-1", "protein_name": "Ribosomal protein uL24-like", "gene_name": "RPL26L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02543-1", "protein_name": "Large ribosomal subunit protein eL20", "gene_name": "RPL18A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40429-1", "protein_name": "Large ribosomal subunit protein uL13", "gene_name": "RPL13A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63173-1", "protein_name": "Large ribosomal subunit protein eL38", "gene_name": "RPL38", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62910-1", "protein_name": "Large ribosomal subunit protein eL32", "gene_name": "RPL32", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39023-1", "protein_name": "Large ribosomal subunit protein uL3", "gene_name": "RPL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18077-1", "protein_name": "Large ribosomal subunit protein eL33", "gene_name": "RPL35A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61254-1", "protein_name": "Large ribosomal subunit protein uL24", "gene_name": "RPL26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84098-1", "protein_name": "Large ribosomal subunit protein eL19", "gene_name": "RPL19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62888-1", "protein_name": "Large ribosomal subunit protein eL30", "gene_name": "RPL30", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83731-1", "protein_name": "Large ribosomal subunit protein eL24", "gene_name": "RPL24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62899-1", "protein_name": "Large ribosomal subunit protein eL31", "gene_name": "RPL31", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62945-1", "protein_name": "Small ribosomal subunit protein eS32", "gene_name": "RPL41", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61927-1", "protein_name": "Large ribosomal subunit protein eL37", "gene_name": "RPL37", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42766-1", "protein_name": "Large ribosomal subunit protein uL29", "gene_name": "RPL35", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05387-1", "protein_name": "Large ribosomal subunit protein P2", "gene_name": "RPLP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92901-1", "protein_name": "Ribosomal protein uL3-like", "gene_name": "RPL3L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46778-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "RPL21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05386-1", "protein_name": "Large ribosomal subunit protein P1", "gene_name": "RPLP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49207-1", "protein_name": "Large ribosomal subunit protein eL34", "gene_name": "RPL34", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62891-1", "protein_name": "Large ribosomal subunit protein eL39", "gene_name": "RPL39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96L21-1", "protein_name": "Ribosomal protein uL16-like", "gene_name": "RPL10L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26373-1", "protein_name": "Large ribosomal subunit protein eL13", "gene_name": "RPL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86US8-1", "protein_name": "Telomerase-binding protein EST1A", "gene_name": "SMG6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYD1-1", "protein_name": "Eukaryotic peptide chain release factor GTP-binding subunit ERF3B", "gene_name": "GSPT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60866-1", "protein_name": "Small ribosomal subunit protein uS10", "gene_name": "RPS20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969Q0-1", "protein_name": "Ribosomal protein eL42-like", "gene_name": "RPL36AL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61247-1", "protein_name": "Small ribosomal subunit protein eS1", "gene_name": "RPS3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62854-1", "protein_name": "Small ribosomal subunit protein eS26", "gene_name": "RPS26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62851-1", "protein_name": "Small ribosomal subunit protein eS25", "gene_name": "RPS25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08865-1", "protein_name": "Small ribosomal subunit protein uS2", "gene_name": "RPSA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62847-1", "protein_name": "Small ribosomal subunit protein eS24", "gene_name": "RPS24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62861-1", "protein_name": "Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein", "gene_name": "FAU", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62241-1", "protein_name": "Small ribosomal subunit protein eS8", "gene_name": "RPS8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62277-1", "protein_name": "Small ribosomal subunit protein uS15", "gene_name": "RPS13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39019-1", "protein_name": "Small ribosomal subunit protein eS19", "gene_name": "RPS19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92540-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG7", "gene_name": "SMG7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPR3-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG5", "gene_name": "SMG5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62269-1", "protein_name": "Small ribosomal subunit protein uS13", "gene_name": "RPS18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02878-1", "protein_name": "Large ribosomal subunit protein eL6", "gene_name": "RPL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62273-1", "protein_name": "Small ribosomal subunit protein uS14", "gene_name": "RPS29", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8ND04-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG8", "gene_name": "SMG8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPI6-1", "protein_name": "mRNA-decapping enzyme 1A", "gene_name": "DCP1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42677-1", "protein_name": "Small ribosomal subunit protein eS27", "gene_name": "RPS27", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38919-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "EIF4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61326-1", "protein_name": "Protein mago nashi homolog", "gene_name": "MAGOH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EH5-1", "protein_name": "Ribosomal protein eL39-like 2", "gene_name": "RPL39L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15287-1", "protein_name": "RNA-binding protein with serine-rich domain 1", "gene_name": "RNPS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0W8-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG9", "gene_name": "SMG9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62263-1", "protein_name": "Small ribosomal subunit protein uS11", "gene_name": "RPS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61513-1", "protein_name": "Large ribosomal subunit protein eL43", "gene_name": "RPL37A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18124-1", "protein_name": "Large ribosomal subunit protein uL30", "gene_name": "RPL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZI7-1", "protein_name": "Regulator of nonsense transcripts 3B", "gene_name": "UPF3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15880-1", "protein_name": "Small ribosomal subunit protein uS5", "gene_name": "RPS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62750-1", "protein_name": "Large ribosomal subunit protein uL23", "gene_name": "RPL23A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62280-1", "protein_name": "Small ribosomal subunit protein uS17", "gene_name": "RPS11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62249-1", "protein_name": "Small ribosomal subunit protein uS9", "gene_name": "RPS16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50914-1", "protein_name": "Large ribosomal subunit protein eL14", "gene_name": "RPL14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62906-1", "protein_name": "Large ribosomal subunit protein uL1", "gene_name": "RPL10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23396-1", "protein_name": "Small ribosomal subunit protein uS3", "gene_name": "RPS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63151-1", "protein_name": "Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform", "gene_name": "PPP2R2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A72-1", "protein_name": "Protein mago nashi homolog 2", "gene_name": "MAGOHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62841-1", "protein_name": "Small ribosomal subunit protein uS19", "gene_name": "RPS15", "tax_name": "Human" }, { "uniprot_canonical_ac": "C0HME6-1", "protein_name": "RPL36 alternative reading frame protein", "gene_name": "RPL36", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62829-1", "protein_name": "Large ribosomal subunit protein uL14", "gene_name": "RPL23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32969-1", "protein_name": "Large ribosomal subunit protein uL6", "gene_name": "RPL9P7; RPL9P8; RPL9P9; RPL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30050-1", "protein_name": "Large ribosomal subunit protein uL11", "gene_name": "RPL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q04637-1", "protein_name": "Eukaryotic translation initiation factor 4 gamma 1", "gene_name": "EIF4G1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62266-1", "protein_name": "Small ribosomal subunit protein uS12", "gene_name": "RPS23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46777-1", "protein_name": "Large ribosomal subunit protein uL18", "gene_name": "RPL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96Q15-1", "protein_name": "Serine/threonine-protein kinase SMG1", "gene_name": "SMG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62753-1", "protein_name": "Small ribosomal subunit protein eS6", "gene_name": "RPS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27635-1", "protein_name": "Large ribosomal subunit protein uL16", "gene_name": "RPL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62913-1", "protein_name": "Large ribosomal subunit protein uL5", "gene_name": "RPL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36578-1", "protein_name": "Large ribosomal subunit protein uL4", "gene_name": "RPL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HAU5-1", "protein_name": "Regulator of nonsense transcripts 2", "gene_name": "UPF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5S9-1", "protein_name": "RNA-binding protein 8A", "gene_name": "RBM8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15234-1", "protein_name": "Protein CASC3", "gene_name": "CASC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05388-1", "protein_name": "Large ribosomal subunit protein uL10", "gene_name": "RPLP0", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46779-1", "protein_name": "Large ribosomal subunit protein eL28", "gene_name": "RPL28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62857-1", "protein_name": "Small ribosomal subunit protein eS28", "gene_name": "RPS28", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPJ4-1", "protein_name": "Proline-rich nuclear receptor coactivator 2", "gene_name": "PNRC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15170-1", "protein_name": "Eukaryotic peptide chain release factor GTP-binding subunit ERF3A", "gene_name": "GSPT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62495-1", "protein_name": "Eukaryotic peptide chain release factor subunit 1", "gene_name": "ETF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61313-1", "protein_name": "Large ribosomal subunit protein eL15", "gene_name": "RPL15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62081-1", "protein_name": "Small ribosomal 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"end_pos": 163, "sequence_org": "R", "sequence_mut": "E", "comment": "Abolishes interaction with UPF1; when associated with E-66.", "evidence": [ { "database": "UniProtKB", "id": "Q92540", "url": "https://www.uniprot.org/uniprotkb/Q92540" }, { "database": "PubMed", "id": "15721257", "url": "https://pubmed.ncbi.nlm.nih.gov/15721257" } ], "uniprot_canonical_ac": "Q92540-1" }, { "start_pos": 66, "end_pos": 66, "sequence_org": "K", "sequence_mut": "E", "comment": "Abolishes interaction with UPF1; when associated with E-163.", "evidence": [ { "database": "UniProtKB", "id": "Q92540", "url": "https://www.uniprot.org/uniprotkb/Q92540" }, { "database": "PubMed", "id": "15721257", "url": "https://pubmed.ncbi.nlm.nih.gov/15721257" } ], "uniprot_canonical_ac": "Q92540-1" } ], "record_id": "pubmed.15721257", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 116 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"uniprot_canonical_ac": "P62847-1", "protein_name": "Small ribosomal subunit protein eS24", "gene_name": "RPS24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62861-1", "protein_name": "Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein", "gene_name": "FAU", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62241-1", "protein_name": "Small ribosomal subunit protein eS8", "gene_name": "RPS8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62277-1", "protein_name": "Small ribosomal subunit protein uS15", "gene_name": "RPS13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39019-1", "protein_name": "Small ribosomal subunit protein eS19", "gene_name": "RPS19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62269-1", "protein_name": "Small ribosomal subunit protein uS13", "gene_name": "RPS18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02878-1", "protein_name": "Large ribosomal subunit protein eL6", "gene_name": "RPL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62273-1", "protein_name": "Small ribosomal subunit protein uS14", "gene_name": "RPS29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17676-1", "protein_name": "CCAAT/enhancer-binding protein beta", "gene_name": "CEBPB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20042-1", "protein_name": "Eukaryotic translation initiation factor 2 subunit 2", "gene_name": "EIF2S2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42677-1", "protein_name": "Small ribosomal subunit protein eS27", "gene_name": "RPS27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EH5-1", "protein_name": "Ribosomal protein eL39-like 2", "gene_name": "RPL39L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62263-1", "protein_name": "Small ribosomal subunit protein uS11", "gene_name": "RPS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61513-1", "protein_name": "Large ribosomal subunit protein eL43", "gene_name": "RPL37A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18124-1", "protein_name": "Large ribosomal subunit protein uL30", "gene_name": "RPL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15880-1", "protein_name": "Small ribosomal subunit protein uS5", "gene_name": "RPS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62750-1", "protein_name": "Large ribosomal subunit protein uL23", "gene_name": "RPL23A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62280-1", "protein_name": "Small ribosomal subunit protein uS17", "gene_name": "RPS11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62249-1", "protein_name": "Small ribosomal subunit protein uS9", "gene_name": "RPS16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50914-1", "protein_name": "Large ribosomal subunit protein eL14", "gene_name": "RPL14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62906-1", "protein_name": "Large ribosomal subunit protein uL1", "gene_name": "RPL10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23396-1", "protein_name": "Small ribosomal subunit protein uS3", "gene_name": "RPS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05198-1", "protein_name": "Eukaryotic translation initiation factor 2 subunit 1", "gene_name": "EIF2S1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35639-1", "protein_name": "DNA damage-inducible transcript 3 protein", "gene_name": "Ddit3", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P62841-1", "protein_name": "Small ribosomal subunit protein uS19", "gene_name": "RPS15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92616-1", "protein_name": "Stalled ribosome sensor GCN1", "gene_name": "GCN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "C0HME6-1", "protein_name": "RPL36 alternative reading frame protein", "gene_name": "RPL36", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62829-1", "protein_name": "Large ribosomal subunit protein uL14", "gene_name": "RPL23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32969-1", "protein_name": "Large ribosomal subunit protein uL6", "gene_name": "RPL9P7; RPL9P8; RPL9P9; RPL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30050-1", "protein_name": "Large ribosomal subunit protein uL11", "gene_name": "RPL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62266-1", "protein_name": "Small ribosomal subunit protein uS12", "gene_name": "RPS23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46777-1", "protein_name": "Large ribosomal subunit protein uL18", "gene_name": "RPL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P2K8-1", "protein_name": "eIF-2-alpha kinase GCN2", "gene_name": "EIF2AK4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41091-1", "protein_name": "Eukaryotic translation initiation factor 2 subunit 3", "gene_name": "EIF2S3", "tax_name": "Human" }, { "uniprot_canonical_ac": 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"Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61313-1", "protein_name": "Large ribosomal subunit protein eL15", "gene_name": "RPL15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62081-1", "protein_name": "Small ribosomal subunit protein eS7", "gene_name": "RPS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71UM5-1", "protein_name": "Ribosomal protein eS27-like", "gene_name": "RPS27L", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P18621", "url": "https://www.uniprot.org/uniprotkb/P18621" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.15775988", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 104 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { 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"n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Characterization of human NIPK (TRB3, SKIP3) gene activation in stressful conditions.", "journal": "Biochemical and biophysical research communications", "date": "2005", "authors": "Ord D, Ord T", "reference": { "type": "PubMed", "id": "15781252", "url": "https://pubmed.ncbi.nlm.nih.gov/15781252" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P18621-1", "protein_name": "Large ribosomal subunit 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"tax_name": "Human" }, { "uniprot_canonical_ac": "P18848-1", "protein_name": "Cyclic AMP-dependent transcription factor ATF-4", "gene_name": "ATF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07020-1", "protein_name": "Large ribosomal subunit protein eL18", "gene_name": "RPL18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35268-1", "protein_name": "Large ribosomal subunit protein eL22", "gene_name": "RPL22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83881-1", "protein_name": "Large ribosomal subunit protein eL42", "gene_name": "RPL36A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61353-1", "protein_name": "Large ribosomal subunit protein eL27", "gene_name": "RPL27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNX3-1", "protein_name": "Ribosomal protein uL24-like", "gene_name": "RPL26L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02543-1", "protein_name": "Large ribosomal subunit protein eL20", "gene_name": "RPL18A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40429-1", "protein_name": "Large ribosomal subunit protein uL13", "gene_name": "RPL13A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63173-1", "protein_name": "Large ribosomal subunit protein eL38", "gene_name": "RPL38", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62910-1", "protein_name": "Large ribosomal subunit protein eL32", "gene_name": "RPL32", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39023-1", "protein_name": "Large ribosomal subunit protein uL3", "gene_name": "RPL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18077-1", "protein_name": "Large ribosomal subunit protein eL33", "gene_name": "RPL35A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61254-1", "protein_name": "Large ribosomal subunit protein uL24", "gene_name": "RPL26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84098-1", "protein_name": "Large ribosomal subunit protein eL19", "gene_name": "RPL19", "tax_name": "Human" }, { "uniprot_canonical_ac": 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"Ribosomal protein uL3-like", "gene_name": "RPL3L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46778-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "RPL21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05386-1", "protein_name": "Large ribosomal subunit protein P1", "gene_name": "RPLP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49207-1", "protein_name": "Large ribosomal subunit protein eL34", "gene_name": "RPL34", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62891-1", "protein_name": "Large ribosomal subunit protein eL39", "gene_name": "RPL39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96L21-1", "protein_name": "Ribosomal protein uL16-like", "gene_name": "RPL10L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26373-1", "protein_name": "Large ribosomal subunit protein eL13", "gene_name": "RPL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60866-1", "protein_name": "Small ribosomal subunit protein uS10", "gene_name": "RPS20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969Q0-1", "protein_name": "Ribosomal protein eL42-like", "gene_name": "RPL36AL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61247-1", "protein_name": "Small ribosomal subunit protein eS1", "gene_name": "RPS3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P2X3-1", "protein_name": "Protein IMPACT", "gene_name": "IMPACT", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62854-1", "protein_name": "Small ribosomal subunit protein eS26", "gene_name": "RPS26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62851-1", "protein_name": "Small ribosomal subunit protein eS25", "gene_name": "RPS25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08865-1", "protein_name": "Small ribosomal subunit protein uS2", "gene_name": "RPSA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62847-1", "protein_name": "Small ribosomal subunit protein eS24", "gene_name": "RPS24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62861-1", "protein_name": "Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein", "gene_name": "FAU", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62241-1", "protein_name": "Small ribosomal subunit protein eS8", "gene_name": "RPS8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62277-1", "protein_name": "Small ribosomal subunit protein uS15", "gene_name": "RPS13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39019-1", "protein_name": "Small ribosomal subunit protein eS19", "gene_name": "RPS19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62269-1", "protein_name": "Small ribosomal subunit protein uS13", "gene_name": "RPS18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02878-1", "protein_name": "Large ribosomal subunit protein eL6", "gene_name": "RPL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62273-1", "protein_name": "Small ribosomal subunit protein uS14", "gene_name": "RPS29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17676-1", "protein_name": "CCAAT/enhancer-binding protein beta", "gene_name": "CEBPB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20042-1", "protein_name": "Eukaryotic translation initiation factor 2 subunit 2", "gene_name": "EIF2S2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42677-1", "protein_name": "Small ribosomal subunit protein eS27", "gene_name": "RPS27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EH5-1", "protein_name": "Ribosomal protein eL39-like 2", "gene_name": "RPL39L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62263-1", "protein_name": "Small ribosomal subunit protein uS11", "gene_name": "RPS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61513-1", "protein_name": "Large ribosomal subunit protein eL43", "gene_name": "RPL37A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18124-1", "protein_name": "Large ribosomal subunit protein uL30", "gene_name": "RPL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15880-1", "protein_name": "Small ribosomal subunit protein uS5", "gene_name": "RPS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62750-1", "protein_name": "Large ribosomal subunit protein uL23", "gene_name": "RPL23A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62280-1", "protein_name": "Small ribosomal subunit protein uS17", "gene_name": "RPS11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62249-1", "protein_name": "Small ribosomal subunit protein uS9", "gene_name": "RPS16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50914-1", "protein_name": "Large ribosomal subunit protein eL14", "gene_name": "RPL14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62906-1", "protein_name": "Large ribosomal subunit protein uL1", "gene_name": "RPL10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23396-1", "protein_name": "Small ribosomal subunit protein uS3", "gene_name": "RPS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05198-1", "protein_name": "Eukaryotic translation initiation factor 2 subunit 1", "gene_name": "EIF2S1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62841-1", "protein_name": "Small ribosomal subunit protein uS19", "gene_name": "RPS15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92616-1", "protein_name": "Stalled ribosome sensor GCN1", "gene_name": "GCN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "C0HME6-1", "protein_name": "RPL36 alternative reading frame protein", "gene_name": "RPL36", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62829-1", "protein_name": "Large ribosomal subunit protein uL14", "gene_name": "RPL23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32969-1", "protein_name": "Large ribosomal subunit protein uL6", "gene_name": "RPL9P7; RPL9P8; RPL9P9; RPL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30050-1", "protein_name": "Large ribosomal subunit protein uL11", "gene_name": "RPL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62266-1", "protein_name": "Small ribosomal subunit protein uS12", "gene_name": "RPS23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46777-1", "protein_name": "Large ribosomal subunit protein uL18", "gene_name": "RPL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P2K8-1", "protein_name": "eIF-2-alpha kinase GCN2", "gene_name": "EIF2AK4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41091-1", "protein_name": "Eukaryotic translation initiation factor 2 subunit 3", "gene_name": "EIF2S3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62753-1", "protein_name": "Small ribosomal subunit protein eS6", "gene_name": "RPS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27635-1", "protein_name": "Large ribosomal subunit protein uL16", "gene_name": "RPL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62913-1", "protein_name": "Large ribosomal subunit protein uL5", "gene_name": "RPL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36578-1", "protein_name": "Large ribosomal subunit protein uL4", "gene_name": "RPL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05388-1", "protein_name": "Large ribosomal subunit protein uL10", "gene_name": "RPLP0", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46779-1", "protein_name": "Large ribosomal subunit protein eL28", "gene_name": "RPL28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62857-1", "protein_name": "Small ribosomal subunit protein eS28", "gene_name": "RPS28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61313-1", "protein_name": "Large ribosomal subunit protein eL15", "gene_name": "RPL15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62081-1", 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"count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Ribosomal protein L30 is a component of the UGA-selenocysteine recoding machinery in eukaryotes.", "journal": "Nature structural & molecular biology", "date": "2005", "authors": "Chavatte L, Brown BA, Driscoll DM", "reference": { "type": "PubMed", "id": "15821744", "url": "https://pubmed.ncbi.nlm.nih.gov/15821744" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P18621-1", "protein_name": "Large ribosomal subunit protein uL22", "gene_name": "RPL17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46776-1", "protein_name": "Large ribosomal subunit protein uL15", "gene_name": "RPL27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46782-1", "protein_name": "Small ribosomal subunit protein uS7", "gene_name": "RPS5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57772-1", "protein_name": "Selenocysteine-specific elongation factor", "gene_name": "EEFSEC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47914-1", "protein_name": "Large ribosomal subunit protein eL29", "gene_name": "RPL29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62244-1", "protein_name": "Small ribosomal subunit protein uS8", "gene_name": "RPS15A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22090-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 1", "gene_name": "RPS4Y1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P5R6-1", "protein_name": "Ribosomal protein eL22-like", "gene_name": "RPL22L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08708-1", "protein_name": "Small ribosomal subunit protein eS17", "gene_name": "RPS17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46783-1", "protein_name": "Small ribosomal subunit protein eS10", "gene_name": "RPS10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62917-1", "protein_name": "Large ribosomal subunit protein uL2", "gene_name": "RPL8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25398-1", "protein_name": "Small ribosomal subunit protein eS12", "gene_name": "RPS12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46781-1", "protein_name": "Small ribosomal subunit protein uS4", "gene_name": "RPS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62424-1", "protein_name": "Large ribosomal subunit protein eL8", "gene_name": "RPL7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62701-1", "protein_name": "Small ribosomal subunit protein eS4, X isoform", "gene_name": "RPS4X", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63220-1", "protein_name": "Small ribosomal subunit protein eS21", "gene_name": "RPS21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TD47-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 2", "gene_name": "RPS4Y2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49591-1", "protein_name": "Serine--tRNA ligase, cytoplasmic", "gene_name": "SARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07020-1", "protein_name": "Large ribosomal subunit protein eL18", "gene_name": "RPL18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35268-1", "protein_name": "Large ribosomal subunit protein eL22", "gene_name": "RPL22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83881-1", "protein_name": "Large ribosomal subunit protein eL42", "gene_name": "RPL36A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61353-1", "protein_name": "Large ribosomal subunit protein eL27", "gene_name": "RPL27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNX3-1", "protein_name": "Ribosomal protein uL24-like", "gene_name": "RPL26L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02543-1", "protein_name": "Large ribosomal subunit protein eL20", "gene_name": "RPL18A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40429-1", "protein_name": "Large ribosomal subunit protein uL13", "gene_name": "RPL13A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63173-1", "protein_name": "Large ribosomal subunit protein eL38", "gene_name": "RPL38", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62910-1", "protein_name": "Large ribosomal subunit protein eL32", "gene_name": "RPL32", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39023-1", "protein_name": "Large ribosomal subunit protein uL3", "gene_name": "RPL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18077-1", "protein_name": "Large ribosomal subunit protein eL33", "gene_name": "RPL35A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61254-1", "protein_name": "Large ribosomal subunit protein uL24", "gene_name": "RPL26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84098-1", "protein_name": "Large ribosomal subunit protein eL19", "gene_name": "RPL19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62888-1", "protein_name": "Large ribosomal subunit protein eL30", "gene_name": "RPL30", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83731-1", "protein_name": "Large ribosomal subunit protein eL24", "gene_name": "RPL24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62899-1", "protein_name": "Large ribosomal subunit protein eL31", "gene_name": "RPL31", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62945-1", "protein_name": "Small ribosomal subunit protein eS32", "gene_name": "RPL41", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61927-1", "protein_name": "Large ribosomal subunit protein eL37", "gene_name": "RPL37", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42766-1", "protein_name": "Large ribosomal subunit protein uL29", "gene_name": "RPL35", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05387-1", "protein_name": "Large ribosomal subunit protein P2", "gene_name": "RPLP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92901-1", "protein_name": "Ribosomal protein uL3-like", "gene_name": "RPL3L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46778-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "RPL21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05386-1", "protein_name": "Large ribosomal subunit protein P1", "gene_name": "RPLP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49207-1", "protein_name": "Large ribosomal subunit protein eL34", "gene_name": "RPL34", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62891-1", "protein_name": "Large ribosomal subunit protein eL39", "gene_name": "RPL39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96L21-1", "protein_name": "Ribosomal protein uL16-like", "gene_name": "RPL10L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26373-1", "protein_name": "Large ribosomal subunit protein eL13", "gene_name": "RPL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60866-1", "protein_name": "Small ribosomal subunit protein uS10", "gene_name": "RPS20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96T21-1", "protein_name": "Selenocysteine insertion sequence-binding protein 2", "gene_name": "SECISBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969Q0-1", "protein_name": "Ribosomal protein eL42-like", "gene_name": "RPL36AL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61247-1", "protein_name": "Small ribosomal subunit protein eS1", "gene_name": "RPS3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62854-1", "protein_name": "Small ribosomal subunit protein eS26", "gene_name": "RPS26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62851-1", "protein_name": "Small ribosomal subunit protein eS25", "gene_name": "RPS25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08865-1", "protein_name": "Small ribosomal subunit protein uS2", "gene_name": "RPSA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62847-1", "protein_name": "Small ribosomal subunit protein eS24", "gene_name": "RPS24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62861-1", "protein_name": "Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein", "gene_name": "FAU", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62241-1", "protein_name": "Small ribosomal subunit protein eS8", "gene_name": "RPS8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62277-1", "protein_name": "Small ribosomal subunit protein uS15", "gene_name": "RPS13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39019-1", "protein_name": "Small ribosomal subunit protein eS19", "gene_name": "RPS19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62269-1", "protein_name": "Small ribosomal subunit protein uS13", "gene_name": "RPS18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02878-1", "protein_name": "Large ribosomal subunit protein eL6", "gene_name": "RPL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62273-1", "protein_name": "Small ribosomal subunit protein uS14", "gene_name": "RPS29", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HD40-1", "protein_name": "O-phosphoseryl-tRNA(Sec) selenium transferase", "gene_name": "SEPSECS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42677-1", "protein_name": "Small ribosomal subunit protein eS27", "gene_name": "RPS27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EH5-1", "protein_name": "Ribosomal protein eL39-like 2", "gene_name": "RPL39L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62263-1", "protein_name": "Small ribosomal subunit protein uS11", "gene_name": "RPS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61513-1", "protein_name": "Large ribosomal subunit protein eL43", "gene_name": "RPL37A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18124-1", "protein_name": "Large ribosomal subunit protein uL30", "gene_name": "RPL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15880-1", "protein_name": "Small ribosomal subunit protein uS5", "gene_name": "RPS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62750-1", "protein_name": "Large ribosomal subunit protein uL23", "gene_name": "RPL23A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62280-1", "protein_name": "Small ribosomal subunit protein uS17", "gene_name": "RPS11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62249-1", "protein_name": "Small ribosomal subunit protein uS9", "gene_name": "RPS16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50914-1", "protein_name": "Large ribosomal subunit protein eL14", "gene_name": "RPL14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62906-1", "protein_name": "Large ribosomal subunit protein uL1", "gene_name": "RPL10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23396-1", "protein_name": "Small ribosomal subunit protein uS3", "gene_name": "RPS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62841-1", "protein_name": "Small ribosomal subunit protein uS19", "gene_name": "RPS15", "tax_name": "Human" }, { "uniprot_canonical_ac": "C0HME6-1", "protein_name": "RPL36 alternative reading frame protein", "gene_name": "RPL36", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62829-1", "protein_name": "Large ribosomal subunit protein uL14", "gene_name": "RPL23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32969-1", "protein_name": "Large ribosomal subunit protein uL6", "gene_name": "RPL9P7; RPL9P8; RPL9P9; RPL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30050-1", "protein_name": "Large ribosomal subunit protein uL11", "gene_name": "RPL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62266-1", "protein_name": "Small ribosomal subunit protein uS12", "gene_name": "RPS23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46777-1", "protein_name": "Large ribosomal subunit protein uL18", "gene_name": "RPL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62753-1", "protein_name": "Small ribosomal subunit protein eS6", "gene_name": "RPS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99611-1", "protein_name": "Selenide, water dikinase 2", "gene_name": "SEPHS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IV42-1", "protein_name": "L-seryl-tRNA(Sec) kinase", "gene_name": "PSTK", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27635-1", "protein_name": "Large ribosomal subunit protein uL16", "gene_name": "RPL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62913-1", "protein_name": "Large ribosomal subunit protein uL5", "gene_name": "RPL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36578-1", "protein_name": "Large ribosomal subunit protein uL4", "gene_name": "RPL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05388-1", "protein_name": "Large ribosomal subunit protein uL10", "gene_name": "RPLP0", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46779-1", "protein_name": "Large ribosomal subunit protein eL28", "gene_name": "RPL28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62857-1", "protein_name": "Small ribosomal subunit protein eS28", "gene_name": "RPS28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61313-1", "protein_name": "Large ribosomal subunit protein eL15", "gene_name": "RPL15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62081-1", "protein_name": "Small ribosomal subunit protein eS7", "gene_name": "RPS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71UM5-1", "protein_name": "Ribosomal protein eS27-like", "gene_name": "RPS27L", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P18621", "url": "https://www.uniprot.org/uniprotkb/P18621" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.15821744", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 94 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Amino-acid limitation induces transcription from the human C/EBPbeta gene via an enhancer activity located downstream of the protein coding sequence.", "journal": "The Biochemical journal", "date": "2005", "authors": "Chen C, Dudenhausen E, Chen H, Pan YX, Gjymishka A, Kilberg MS", "reference": { "type": "PubMed", "id": "16026328", "url": "https://pubmed.ncbi.nlm.nih.gov/16026328" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P18621-1", "protein_name": "Large ribosomal subunit protein uL22", "gene_name": "RPL17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46776-1", "protein_name": "Large ribosomal subunit protein uL15", "gene_name": "RPL27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46782-1", "protein_name": "Small ribosomal subunit protein uS7", "gene_name": "RPS5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47914-1", "protein_name": "Large ribosomal subunit protein eL29", "gene_name": "RPL29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62244-1", "protein_name": "Small ribosomal subunit protein uS8", "gene_name": "RPS15A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22090-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 1", "gene_name": "RPS4Y1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P5R6-1", "protein_name": "Ribosomal protein eL22-like", "gene_name": "RPL22L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08708-1", "protein_name": "Small ribosomal subunit protein eS17", "gene_name": "RPS17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46783-1", "protein_name": "Small ribosomal subunit protein eS10", "gene_name": "RPS10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62917-1", "protein_name": "Large ribosomal subunit protein uL2", "gene_name": "RPL8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25398-1", "protein_name": "Small ribosomal subunit protein eS12", "gene_name": "RPS12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46781-1", "protein_name": "Small ribosomal subunit protein uS4", "gene_name": "RPS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62424-1", "protein_name": "Large ribosomal subunit protein eL8", "gene_name": "RPL7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62701-1", "protein_name": "Small ribosomal subunit protein eS4, X isoform", "gene_name": "RPS4X", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63220-1", "protein_name": "Small ribosomal subunit protein eS21", "gene_name": "RPS21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TD47-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 2", "gene_name": "RPS4Y2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96RU7-1", "protein_name": "Tribbles homolog 3", "gene_name": "TRIB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08243-1", "protein_name": "Asparagine synthetase [glutamine-hydrolyzing]", "gene_name": "ASNS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53567-1", "protein_name": "CCAAT/enhancer-binding protein gamma", "gene_name": "CEBPG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18847-1", "protein_name": "Cyclic AMP-dependent transcription factor ATF-3", "gene_name": "ATF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35638-1", "protein_name": "DNA damage-inducible transcript 3 protein", "gene_name": "DDIT3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15336-1", "protein_name": "Cyclic AMP-dependent transcription factor ATF-2", "gene_name": "ATF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18848-1", "protein_name": "Cyclic AMP-dependent transcription factor ATF-4", "gene_name": "ATF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07020-1", "protein_name": "Large ribosomal subunit protein eL18", "gene_name": "RPL18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35268-1", "protein_name": "Large ribosomal subunit protein eL22", "gene_name": "RPL22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83881-1", "protein_name": "Large ribosomal subunit protein eL42", "gene_name": "RPL36A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61353-1", "protein_name": "Large ribosomal subunit protein eL27", "gene_name": "RPL27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNX3-1", "protein_name": "Ribosomal protein uL24-like", "gene_name": "RPL26L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02543-1", "protein_name": "Large ribosomal subunit protein eL20", "gene_name": "RPL18A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40429-1", "protein_name": "Large ribosomal subunit protein uL13", "gene_name": "RPL13A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63173-1", "protein_name": "Large ribosomal subunit protein eL38", "gene_name": "RPL38", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62910-1", "protein_name": "Large ribosomal subunit protein eL32", "gene_name": "RPL32", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39023-1", "protein_name": "Large ribosomal subunit protein uL3", "gene_name": "RPL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18077-1", "protein_name": "Large ribosomal subunit protein eL33", "gene_name": "RPL35A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61254-1", "protein_name": "Large ribosomal subunit protein uL24", "gene_name": "RPL26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84098-1", "protein_name": "Large ribosomal subunit protein eL19", "gene_name": "RPL19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62888-1", "protein_name": "Large ribosomal subunit protein eL30", "gene_name": "RPL30", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83731-1", "protein_name": "Large ribosomal subunit protein eL24", "gene_name": "RPL24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62899-1", "protein_name": "Large ribosomal subunit protein eL31", "gene_name": "RPL31", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62945-1", "protein_name": "Small ribosomal subunit protein eS32", "gene_name": "RPL41", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61927-1", "protein_name": "Large ribosomal subunit protein eL37", "gene_name": "RPL37", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42766-1", "protein_name": "Large ribosomal subunit protein uL29", "gene_name": "RPL35", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05387-1", "protein_name": "Large ribosomal subunit protein P2", "gene_name": "RPLP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92901-1", "protein_name": "Ribosomal protein uL3-like", "gene_name": "RPL3L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46778-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "RPL21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05386-1", "protein_name": "Large ribosomal subunit protein P1", "gene_name": "RPLP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49207-1", "protein_name": "Large ribosomal subunit protein eL34", "gene_name": "RPL34", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62891-1", "protein_name": "Large ribosomal subunit protein eL39", "gene_name": "RPL39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96L21-1", "protein_name": "Ribosomal protein uL16-like", "gene_name": "RPL10L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26373-1", "protein_name": "Large ribosomal subunit protein eL13", "gene_name": "RPL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60866-1", "protein_name": "Small ribosomal subunit protein uS10", "gene_name": "RPS20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969Q0-1", "protein_name": "Ribosomal protein eL42-like", "gene_name": "RPL36AL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61247-1", "protein_name": "Small ribosomal subunit protein eS1", "gene_name": "RPS3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P2X3-1", "protein_name": "Protein IMPACT", "gene_name": "IMPACT", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62854-1", "protein_name": "Small ribosomal subunit protein eS26", "gene_name": "RPS26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62851-1", "protein_name": "Small ribosomal subunit protein eS25", "gene_name": "RPS25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08865-1", "protein_name": "Small ribosomal subunit protein uS2", "gene_name": "RPSA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62847-1", "protein_name": "Small ribosomal subunit protein eS24", "gene_name": "RPS24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62861-1", "protein_name": "Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein", "gene_name": "FAU", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62241-1", "protein_name": "Small ribosomal subunit protein eS8", "gene_name": "RPS8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62277-1", "protein_name": "Small ribosomal subunit protein uS15", "gene_name": "RPS13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39019-1", "protein_name": "Small ribosomal subunit protein eS19", "gene_name": "RPS19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62269-1", "protein_name": "Small ribosomal subunit protein uS13", "gene_name": "RPS18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02878-1", "protein_name": "Large ribosomal subunit protein eL6", "gene_name": "RPL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62273-1", "protein_name": "Small ribosomal subunit protein uS14", "gene_name": "RPS29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17676-1", "protein_name": "CCAAT/enhancer-binding protein beta", "gene_name": "CEBPB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20042-1", "protein_name": "Eukaryotic translation initiation factor 2 subunit 2", "gene_name": "EIF2S2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42677-1", "protein_name": "Small ribosomal subunit protein eS27", "gene_name": "RPS27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EH5-1", "protein_name": "Ribosomal protein eL39-like 2", "gene_name": "RPL39L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62263-1", "protein_name": "Small ribosomal subunit protein uS11", "gene_name": "RPS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61513-1", "protein_name": "Large ribosomal subunit protein eL43", "gene_name": "RPL37A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18124-1", "protein_name": "Large ribosomal subunit protein uL30", "gene_name": "RPL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15880-1", "protein_name": "Small ribosomal subunit protein uS5", "gene_name": "RPS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62750-1", "protein_name": "Large ribosomal subunit protein uL23", "gene_name": "RPL23A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62280-1", "protein_name": "Small ribosomal subunit protein uS17", "gene_name": "RPS11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62249-1", "protein_name": "Small ribosomal subunit protein uS9", "gene_name": "RPS16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50914-1", "protein_name": "Large ribosomal subunit protein eL14", "gene_name": "RPL14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62906-1", "protein_name": "Large ribosomal subunit protein uL1", "gene_name": "RPL10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23396-1", "protein_name": "Small ribosomal subunit protein uS3", "gene_name": "RPS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05198-1", "protein_name": "Eukaryotic translation initiation factor 2 subunit 1", "gene_name": "EIF2S1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62841-1", "protein_name": "Small ribosomal subunit protein uS19", "gene_name": "RPS15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92616-1", "protein_name": "Stalled ribosome sensor GCN1", "gene_name": "GCN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "C0HME6-1", "protein_name": "RPL36 alternative reading frame protein", "gene_name": "RPL36", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62829-1", "protein_name": "Large ribosomal subunit protein uL14", "gene_name": "RPL23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32969-1", "protein_name": "Large ribosomal subunit protein uL6", "gene_name": "RPL9P7; RPL9P8; RPL9P9; RPL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30050-1", "protein_name": "Large ribosomal subunit protein uL11", "gene_name": "RPL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62266-1", "protein_name": "Small ribosomal subunit protein uS12", "gene_name": "RPS23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46777-1", "protein_name": "Large ribosomal subunit protein uL18", "gene_name": "RPL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P2K8-1", "protein_name": "eIF-2-alpha kinase GCN2", "gene_name": "EIF2AK4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41091-1", "protein_name": "Eukaryotic translation initiation factor 2 subunit 3", "gene_name": "EIF2S3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62753-1", "protein_name": "Small ribosomal subunit protein eS6", "gene_name": "RPS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27635-1", "protein_name": "Large ribosomal subunit protein uL16", "gene_name": "RPL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62913-1", "protein_name": "Large ribosomal subunit protein uL5", "gene_name": "RPL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36578-1", "protein_name": "Large ribosomal subunit protein uL4", "gene_name": "RPL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05388-1", "protein_name": "Large ribosomal subunit protein uL10", "gene_name": "RPLP0", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46779-1", "protein_name": "Large ribosomal subunit protein eL28", "gene_name": "RPL28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62857-1", "protein_name": "Small ribosomal subunit protein eS28", "gene_name": "RPS28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61313-1", "protein_name": "Large ribosomal subunit protein eL15", "gene_name": "RPL15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62081-1", "protein_name": "Small ribosomal subunit protein eS7", "gene_name": "RPS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71UM5-1", "protein_name": "Ribosomal protein eS27-like", "gene_name": "RPS27L", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P18621", "url": "https://www.uniprot.org/uniprotkb/P18621" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.16026328", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 102 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "CBP80 promotes interaction of Upf1 with Upf2 during nonsense-mediated mRNA decay in mammalian cells.", "journal": "Nature structural & molecular biology", "date": "2005", "authors": "Hosoda N, Kim YK, Lejeune F, Maquat LE", "reference": { "type": "PubMed", "id": "16186820", "url": "https://pubmed.ncbi.nlm.nih.gov/16186820" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P18621-1", "protein_name": "Large ribosomal subunit protein uL22", "gene_name": "RPL17", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H1J1-1", "protein_name": "Regulator of nonsense transcripts 3A", "gene_name": "UPF3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46776-1", "protein_name": "Large ribosomal subunit protein uL15", "gene_name": "RPL27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46782-1", "protein_name": "Small ribosomal subunit protein uS7", "gene_name": "RPS5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47914-1", "protein_name": "Large ribosomal subunit protein eL29", "gene_name": "RPL29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62244-1", "protein_name": "Small ribosomal subunit protein uS8", "gene_name": "RPS15A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22090-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 1", "gene_name": "RPS4Y1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P5R6-1", "protein_name": "Ribosomal protein eL22-like", "gene_name": "RPL22L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08708-1", "protein_name": "Small ribosomal subunit protein eS17", "gene_name": "RPS17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46783-1", "protein_name": "Small ribosomal subunit protein eS10", "gene_name": "RPS10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62917-1", "protein_name": "Large ribosomal subunit protein uL2", "gene_name": "RPL8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25398-1", "protein_name": "Small ribosomal subunit protein eS12", "gene_name": "RPS12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46781-1", "protein_name": "Small ribosomal subunit protein uS4", "gene_name": "RPS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62424-1", "protein_name": "Large ribosomal subunit protein eL8", "gene_name": "RPL7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62701-1", "protein_name": "Small ribosomal subunit protein eS4, X isoform", "gene_name": "RPS4X", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63220-1", "protein_name": "Small ribosomal subunit protein eS21", "gene_name": "RPS21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TD47-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 2", "gene_name": "RPS4Y2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11940-1", "protein_name": "Polyadenylate-binding protein 1", "gene_name": "PABPC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07020-1", "protein_name": "Large ribosomal subunit protein eL18", "gene_name": "RPL18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35268-1", "protein_name": "Large ribosomal subunit protein eL22", "gene_name": "RPL22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83881-1", "protein_name": "Large ribosomal subunit protein eL42", "gene_name": "RPL36A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61353-1", "protein_name": "Large ribosomal subunit protein eL27", "gene_name": "RPL27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNX3-1", "protein_name": "Ribosomal protein uL24-like", "gene_name": "RPL26L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02543-1", "protein_name": "Large ribosomal subunit protein eL20", "gene_name": "RPL18A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40429-1", "protein_name": "Large ribosomal subunit protein uL13", "gene_name": "RPL13A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63173-1", "protein_name": "Large ribosomal subunit protein eL38", "gene_name": "RPL38", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62910-1", "protein_name": "Large ribosomal subunit protein eL32", "gene_name": "RPL32", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39023-1", "protein_name": "Large ribosomal subunit protein uL3", "gene_name": "RPL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18077-1", "protein_name": "Large ribosomal subunit protein eL33", "gene_name": "RPL35A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61254-1", "protein_name": "Large ribosomal subunit protein uL24", "gene_name": "RPL26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84098-1", "protein_name": "Large ribosomal subunit protein eL19", "gene_name": "RPL19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62888-1", "protein_name": "Large ribosomal subunit protein eL30", "gene_name": "RPL30", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83731-1", "protein_name": "Large ribosomal subunit protein eL24", "gene_name": "RPL24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62899-1", "protein_name": "Large ribosomal subunit protein eL31", "gene_name": "RPL31", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62945-1", "protein_name": "Small ribosomal subunit protein eS32", "gene_name": "RPL41", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61927-1", "protein_name": "Large ribosomal subunit protein eL37", "gene_name": "RPL37", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42766-1", "protein_name": "Large ribosomal subunit protein uL29", "gene_name": "RPL35", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05387-1", "protein_name": "Large ribosomal subunit protein P2", "gene_name": "RPLP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92901-1", "protein_name": "Ribosomal protein uL3-like", "gene_name": "RPL3L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46778-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "RPL21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05386-1", "protein_name": "Large ribosomal subunit protein P1", "gene_name": "RPLP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49207-1", "protein_name": "Large ribosomal subunit protein eL34", "gene_name": "RPL34", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62891-1", "protein_name": "Large ribosomal subunit protein eL39", "gene_name": "RPL39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96L21-1", "protein_name": "Ribosomal protein uL16-like", "gene_name": "RPL10L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26373-1", "protein_name": "Large ribosomal subunit protein eL13", "gene_name": "RPL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86US8-1", "protein_name": "Telomerase-binding protein EST1A", "gene_name": "SMG6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYD1-1", "protein_name": "Eukaryotic peptide chain release factor GTP-binding subunit ERF3B", "gene_name": "GSPT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60866-1", "protein_name": "Small ribosomal subunit protein uS10", "gene_name": "RPS20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969Q0-1", "protein_name": "Ribosomal protein eL42-like", "gene_name": "RPL36AL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61247-1", "protein_name": "Small ribosomal subunit protein eS1", "gene_name": "RPS3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62854-1", "protein_name": "Small ribosomal subunit protein eS26", "gene_name": "RPS26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62851-1", "protein_name": "Small ribosomal subunit protein eS25", "gene_name": "RPS25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08865-1", "protein_name": "Small ribosomal subunit protein uS2", "gene_name": "RPSA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62847-1", "protein_name": "Small ribosomal subunit protein eS24", "gene_name": "RPS24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62861-1", "protein_name": "Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein", "gene_name": "FAU", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62241-1", "protein_name": "Small ribosomal subunit protein eS8", "gene_name": "RPS8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62277-1", "protein_name": "Small ribosomal subunit protein uS15", "gene_name": "RPS13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39019-1", "protein_name": "Small ribosomal subunit protein eS19", "gene_name": "RPS19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92540-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG7", "gene_name": "SMG7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPR3-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG5", "gene_name": "SMG5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62269-1", "protein_name": "Small ribosomal subunit protein uS13", "gene_name": "RPS18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02878-1", "protein_name": "Large ribosomal subunit protein eL6", "gene_name": "RPL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62273-1", "protein_name": "Small ribosomal subunit protein uS14", "gene_name": "RPS29", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8ND04-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG8", "gene_name": "SMG8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPI6-1", "protein_name": "mRNA-decapping enzyme 1A", "gene_name": "DCP1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42677-1", "protein_name": "Small ribosomal subunit protein eS27", "gene_name": "RPS27", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38919-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "EIF4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61326-1", "protein_name": "Protein mago nashi homolog", "gene_name": "MAGOH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EH5-1", "protein_name": "Ribosomal protein eL39-like 2", "gene_name": "RPL39L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15287-1", "protein_name": "RNA-binding protein with serine-rich domain 1", "gene_name": "RNPS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0W8-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG9", "gene_name": "SMG9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62263-1", "protein_name": "Small ribosomal subunit protein uS11", "gene_name": "RPS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61513-1", "protein_name": "Large ribosomal subunit protein eL43", "gene_name": "RPL37A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18124-1", "protein_name": "Large ribosomal subunit protein uL30", "gene_name": "RPL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZI7-1", "protein_name": "Regulator of nonsense transcripts 3B", "gene_name": "UPF3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15880-1", "protein_name": "Small ribosomal subunit protein uS5", "gene_name": "RPS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62750-1", "protein_name": "Large ribosomal subunit protein uL23", "gene_name": "RPL23A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62280-1", "protein_name": "Small ribosomal subunit protein uS17", "gene_name": "RPS11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62249-1", "protein_name": "Small ribosomal subunit protein uS9", "gene_name": "RPS16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50914-1", "protein_name": "Large ribosomal subunit protein eL14", "gene_name": "RPL14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62906-1", "protein_name": "Large ribosomal subunit protein uL1", "gene_name": "RPL10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23396-1", "protein_name": "Small ribosomal subunit protein uS3", "gene_name": "RPS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63151-1", "protein_name": "Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform", "gene_name": "PPP2R2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A72-1", "protein_name": "Protein mago nashi homolog 2", "gene_name": "MAGOHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62841-1", "protein_name": "Small ribosomal subunit protein uS19", "gene_name": "RPS15", "tax_name": "Human" }, { "uniprot_canonical_ac": "C0HME6-1", "protein_name": "RPL36 alternative reading frame protein", "gene_name": "RPL36", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62829-1", "protein_name": "Large ribosomal subunit protein uL14", "gene_name": "RPL23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32969-1", "protein_name": "Large ribosomal subunit protein uL6", "gene_name": "RPL9P7; RPL9P8; RPL9P9; RPL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30050-1", "protein_name": "Large ribosomal subunit protein uL11", "gene_name": "RPL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q04637-1", "protein_name": "Eukaryotic translation initiation factor 4 gamma 1", "gene_name": "EIF4G1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62266-1", "protein_name": "Small ribosomal subunit protein uS12", "gene_name": "RPS23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46777-1", "protein_name": "Large ribosomal subunit protein uL18", "gene_name": "RPL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96Q15-1", "protein_name": "Serine/threonine-protein kinase SMG1", "gene_name": "SMG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62753-1", "protein_name": "Small ribosomal subunit protein eS6", "gene_name": "RPS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27635-1", "protein_name": "Large ribosomal subunit protein uL16", "gene_name": "RPL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62913-1", "protein_name": "Large ribosomal subunit protein uL5", "gene_name": "RPL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36578-1", "protein_name": "Large ribosomal subunit protein uL4", "gene_name": "RPL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HAU5-1", "protein_name": "Regulator of nonsense transcripts 2", "gene_name": "UPF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5S9-1", "protein_name": "RNA-binding protein 8A", "gene_name": "RBM8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15234-1", "protein_name": "Protein CASC3", "gene_name": "CASC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05388-1", "protein_name": "Large ribosomal subunit protein uL10", "gene_name": "RPLP0", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46779-1", "protein_name": "Large ribosomal subunit protein eL28", "gene_name": "RPL28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62857-1", "protein_name": "Small ribosomal subunit protein eS28", "gene_name": "RPS28", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPJ4-1", "protein_name": "Proline-rich nuclear receptor coactivator 2", "gene_name": "PNRC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15170-1", "protein_name": "Eukaryotic peptide chain release factor GTP-binding subunit ERF3A", "gene_name": "GSPT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62495-1", "protein_name": "Eukaryotic peptide chain release factor subunit 1", "gene_name": "ETF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61313-1", "protein_name": "Large ribosomal subunit protein eL15", "gene_name": "RPL15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62081-1", "protein_name": "Small ribosomal subunit protein eS7", "gene_name": "RPS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71UM5-1", "protein_name": "Ribosomal protein eS27-like", "gene_name": "RPS27L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30153-1", "protein_name": "Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform", "gene_name": "PPP2R1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67775-1", "protein_name": "Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform", "gene_name": "PPP2CA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92900-1", "protein_name": "Regulator of nonsense transcripts 1", "gene_name": "UPF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P18621", "url": "https://www.uniprot.org/uniprotkb/P18621" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.16186820", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 116 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Exon-junction complex components specify distinct routes of nonsense-mediated mRNA decay with differential cofactor requirements.", "journal": "Molecular cell", "date": "2005", "authors": "Gehring NH, Kunz JB, Neu-Yilik G, Breit S, Viegas MH, Hentze MW, Kulozik AE", "reference": { "type": "PubMed", "id": "16209946", "url": "https://pubmed.ncbi.nlm.nih.gov/16209946" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P18621-1", "protein_name": "Large ribosomal subunit protein uL22", "gene_name": "RPL17", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H1J1-1", "protein_name": "Regulator of nonsense transcripts 3A", "gene_name": "UPF3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46776-1", "protein_name": "Large ribosomal subunit protein uL15", "gene_name": "RPL27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46782-1", "protein_name": "Small ribosomal subunit protein uS7", "gene_name": "RPS5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47914-1", "protein_name": "Large ribosomal subunit protein eL29", "gene_name": "RPL29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62244-1", "protein_name": "Small ribosomal subunit protein uS8", "gene_name": "RPS15A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22090-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 1", "gene_name": "RPS4Y1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P5R6-1", "protein_name": "Ribosomal protein eL22-like", "gene_name": "RPL22L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08708-1", "protein_name": "Small ribosomal subunit protein eS17", "gene_name": "RPS17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46783-1", "protein_name": "Small ribosomal subunit protein eS10", "gene_name": "RPS10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62917-1", "protein_name": "Large ribosomal subunit protein uL2", "gene_name": "RPL8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25398-1", "protein_name": "Small ribosomal subunit protein eS12", "gene_name": "RPS12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46781-1", "protein_name": "Small ribosomal subunit protein uS4", "gene_name": "RPS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62424-1", "protein_name": "Large ribosomal subunit protein eL8", "gene_name": "RPL7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62701-1", "protein_name": "Small ribosomal subunit protein eS4, X isoform", "gene_name": "RPS4X", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63220-1", "protein_name": "Small ribosomal subunit protein eS21", "gene_name": "RPS21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TD47-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 2", "gene_name": "RPS4Y2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11940-1", "protein_name": "Polyadenylate-binding protein 1", "gene_name": "PABPC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07020-1", "protein_name": "Large ribosomal subunit protein eL18", "gene_name": "RPL18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35268-1", "protein_name": "Large ribosomal subunit protein eL22", "gene_name": "RPL22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83881-1", "protein_name": "Large ribosomal subunit protein eL42", "gene_name": "RPL36A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61353-1", "protein_name": "Large ribosomal subunit protein eL27", "gene_name": "RPL27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNX3-1", "protein_name": "Ribosomal protein uL24-like", "gene_name": "RPL26L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02543-1", "protein_name": "Large ribosomal subunit protein eL20", "gene_name": "RPL18A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40429-1", "protein_name": "Large ribosomal subunit protein uL13", "gene_name": "RPL13A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63173-1", "protein_name": "Large ribosomal subunit protein eL38", "gene_name": "RPL38", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62910-1", "protein_name": "Large ribosomal subunit protein eL32", "gene_name": "RPL32", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39023-1", "protein_name": "Large ribosomal subunit protein uL3", "gene_name": "RPL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18077-1", "protein_name": "Large ribosomal subunit protein eL33", "gene_name": "RPL35A", "tax_name": "Human" }, { "uniprot_canonical_ac": 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Concerted action of poly(A) nucleases and decapping enzyme in mammalian mRNA turnover.", "journal": "Nature structural & molecular biology", "date": "2005", "authors": "Yamashita A, Chang TC, Yamashita Y, Zhu W, Zhong Z, Chen CY, Shyu AB", "reference": { "type": "PubMed", "id": "16284618", "url": "https://pubmed.ncbi.nlm.nih.gov/16284618" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P18621-1", "protein_name": "Large ribosomal subunit protein uL22", "gene_name": "RPL17", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H1J1-1", "protein_name": "Regulator of nonsense transcripts 3A", "gene_name": "UPF3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46776-1", "protein_name": "Large ribosomal subunit protein uL15", "gene_name": "RPL27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46782-1", "protein_name": "Small ribosomal subunit protein uS7", "gene_name": "RPS5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47914-1", "protein_name": "Large ribosomal subunit protein eL29", "gene_name": "RPL29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62244-1", "protein_name": "Small ribosomal subunit protein uS8", "gene_name": "RPS15A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22090-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 1", "gene_name": "RPS4Y1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P5R6-1", "protein_name": "Ribosomal protein eL22-like", "gene_name": "RPL22L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08708-1", "protein_name": "Small ribosomal subunit protein eS17", "gene_name": "RPS17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46783-1", "protein_name": "Small ribosomal subunit protein eS10", "gene_name": "RPS10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62917-1", "protein_name": "Large ribosomal subunit protein uL2", "gene_name": "RPL8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25398-1", "protein_name": "Small ribosomal subunit protein eS12", "gene_name": "RPS12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46781-1", "protein_name": "Small ribosomal subunit protein uS4", "gene_name": "RPS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62424-1", "protein_name": "Large ribosomal subunit protein eL8", "gene_name": "RPL7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62701-1", "protein_name": "Small ribosomal subunit protein eS4, X isoform", "gene_name": "RPS4X", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63220-1", "protein_name": "Small ribosomal subunit protein eS21", "gene_name": "RPS21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TD47-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 2", "gene_name": "RPS4Y2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UIV1-1", "protein_name": "CCR4-NOT transcription complex subunit 7", "gene_name": "CNOT7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14240-1", "protein_name": "Eukaryotic initiation factor 4A-II", "gene_name": "EIF4A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11940-1", "protein_name": "Polyadenylate-binding protein 1", "gene_name": "PABPC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07020-1", "protein_name": "Large ribosomal subunit protein eL18", "gene_name": "RPL18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35268-1", "protein_name": "Large ribosomal subunit protein eL22", "gene_name": "RPL22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83881-1", "protein_name": "Large ribosomal subunit protein eL42", "gene_name": "RPL36A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61353-1", "protein_name": "Large ribosomal subunit protein eL27", "gene_name": "RPL27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNX3-1", "protein_name": "Ribosomal protein uL24-like", "gene_name": "RPL26L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02543-1", "protein_name": "Large ribosomal subunit protein eL20", "gene_name": "RPL18A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40429-1", "protein_name": "Large ribosomal subunit protein uL13", "gene_name": "RPL13A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63173-1", "protein_name": "Large ribosomal subunit protein eL38", "gene_name": "RPL38", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62910-1", "protein_name": "Large ribosomal subunit protein eL32", "gene_name": "RPL32", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39023-1", "protein_name": "Large ribosomal subunit protein uL3", "gene_name": "RPL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18077-1", "protein_name": "Large ribosomal subunit protein eL33", "gene_name": "RPL35A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61254-1", "protein_name": "Large ribosomal subunit protein uL24", "gene_name": "RPL26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84098-1", "protein_name": "Large ribosomal subunit protein eL19", "gene_name": "RPL19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62888-1", "protein_name": "Large ribosomal subunit protein eL30", "gene_name": "RPL30", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83731-1", "protein_name": "Large ribosomal subunit protein eL24", "gene_name": "RPL24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62899-1", "protein_name": "Large ribosomal subunit protein eL31", "gene_name": "RPL31", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62945-1", "protein_name": "Small ribosomal subunit protein eS32", "gene_name": "RPL41", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61927-1", "protein_name": "Large ribosomal subunit protein eL37", "gene_name": "RPL37", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42766-1", "protein_name": "Large ribosomal subunit protein uL29", "gene_name": "RPL35", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05387-1", "protein_name": "Large ribosomal subunit protein P2", "gene_name": "RPLP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92901-1", "protein_name": "Ribosomal protein uL3-like", "gene_name": "RPL3L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46778-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "RPL21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05386-1", "protein_name": "Large ribosomal subunit protein P1", "gene_name": "RPLP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49207-1", "protein_name": "Large ribosomal subunit protein eL34", "gene_name": "RPL34", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62891-1", "protein_name": "Large ribosomal subunit protein eL39", "gene_name": "RPL39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96L21-1", "protein_name": "Ribosomal protein uL16-like", "gene_name": "RPL10L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26373-1", "protein_name": "Large ribosomal subunit protein eL13", "gene_name": "RPL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86US8-1", "protein_name": "Telomerase-binding protein EST1A", "gene_name": "SMG6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYD1-1", "protein_name": "Eukaryotic peptide chain release factor GTP-binding subunit ERF3B", "gene_name": "GSPT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60866-1", "protein_name": "Small ribosomal subunit protein uS10", "gene_name": "RPS20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969Q0-1", "protein_name": "Ribosomal protein eL42-like", "gene_name": "RPL36AL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61247-1", "protein_name": "Small ribosomal subunit protein eS1", "gene_name": "RPS3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60842-1", "protein_name": "Eukaryotic initiation factor 4A-I", "gene_name": "EIF4A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62854-1", "protein_name": "Small ribosomal subunit protein eS26", "gene_name": "RPS26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62851-1", "protein_name": "Small ribosomal subunit protein eS25", "gene_name": "RPS25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08865-1", "protein_name": "Small ribosomal subunit protein uS2", "gene_name": "RPSA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62847-1", "protein_name": "Small ribosomal subunit protein eS24", "gene_name": "RPS24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62861-1", "protein_name": "Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein", "gene_name": "FAU", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62241-1", "protein_name": "Small ribosomal subunit protein eS8", "gene_name": "RPS8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H074-1", "protein_name": "Polyadenylate-binding protein-interacting protein 1", "gene_name": "PAIP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62277-1", "protein_name": "Small ribosomal subunit protein uS15", "gene_name": "RPS13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39019-1", "protein_name": "Small ribosomal subunit protein eS19", "gene_name": "RPS19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92540-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG7", "gene_name": "SMG7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPR3-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG5", "gene_name": "SMG5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62269-1", "protein_name": "Small ribosomal subunit protein uS13", "gene_name": "RPS18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02878-1", "protein_name": "Large ribosomal subunit protein eL6", "gene_name": "RPL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62273-1", "protein_name": "Small ribosomal subunit protein uS14", "gene_name": "RPS29", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8ND04-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG8", "gene_name": "SMG8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPI6-1", "protein_name": "mRNA-decapping enzyme 1A", "gene_name": "DCP1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42677-1", "protein_name": "Small ribosomal subunit protein eS27", "gene_name": "RPS27", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38919-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "EIF4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61326-1", "protein_name": "Protein mago nashi homolog", "gene_name": "MAGOH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EH5-1", "protein_name": "Ribosomal protein eL39-like 2", "gene_name": "RPL39L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15287-1", "protein_name": "RNA-binding protein with serine-rich domain 1", "gene_name": "RNPS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92600-1", "protein_name": "CCR4-NOT transcription complex subunit 9", "gene_name": "CNOT9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0W8-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG9", "gene_name": "SMG9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62263-1", "protein_name": "Small ribosomal subunit protein uS11", "gene_name": "RPS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61513-1", "protein_name": "Large ribosomal subunit protein eL43", "gene_name": "RPL37A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18124-1", "protein_name": "Large ribosomal subunit protein uL30", "gene_name": "RPL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZI7-1", "protein_name": "Regulator of nonsense transcripts 3B", "gene_name": "UPF3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9C0C2-1", "protein_name": "182 kDa tankyrase-1-binding protein", "gene_name": "TNKS1BP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15880-1", "protein_name": "Small ribosomal subunit protein uS5", "gene_name": "RPS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62750-1", "protein_name": "Large ribosomal subunit protein uL23", "gene_name": "RPL23A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62280-1", "protein_name": "Small ribosomal subunit protein uS17", "gene_name": "RPS11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62249-1", "protein_name": "Small ribosomal subunit protein uS9", "gene_name": "RPS16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50914-1", "protein_name": "Large ribosomal subunit protein eL14", "gene_name": "RPL14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62906-1", "protein_name": "Large ribosomal subunit protein uL1", "gene_name": "RPL10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q504Q3-1", "protein_name": "PAN2-PAN3 deadenylation complex catalytic subunit PAN2", "gene_name": "PAN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5TAX3-1", "protein_name": "Terminal uridylyltransferase 4", "gene_name": "TUT4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23396-1", "protein_name": "Small ribosomal subunit protein uS3", "gene_name": "RPS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06730-1", "protein_name": "Eukaryotic translation initiation factor 4E", "gene_name": "EIF4E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63151-1", "protein_name": "Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform", "gene_name": "PPP2R2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A72-1", "protein_name": "Protein mago nashi homolog 2", "gene_name": "MAGOHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75175-1", "protein_name": "CCR4-NOT transcription complex subunit 3", "gene_name": "CNOT3", "tax_name": "Human" }, { "uniprot_canonical_ac": "A5YKK6-1", "protein_name": "CCR4-NOT transcription complex subunit 1", "gene_name": "CNOT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NZN8-1", "protein_name": "CCR4-NOT transcription complex subunit 2", "gene_name": "CNOT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9ULM6-1", "protein_name": "CCR4-NOT transcription complex subunit 6", "gene_name": "CNOT6", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95628-1", "protein_name": "CCR4-NOT transcription complex subunit 4", "gene_name": "CNOT4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96LI5-1", "protein_name": "CCR4-NOT transcription complex subunit 6-like", "gene_name": "CNOT6L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H9A5-1", "protein_name": "CCR4-NOT transcription complex subunit 10", "gene_name": "CNOT10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62841-1", "protein_name": "Small ribosomal subunit protein uS19", "gene_name": "RPS15", "tax_name": "Human" }, { "uniprot_canonical_ac": "C0HME6-1", "protein_name": "RPL36 alternative reading frame protein", "gene_name": "RPL36", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62829-1", "protein_name": "Large ribosomal subunit protein uL14", "gene_name": "RPL23", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95453-1", "protein_name": "Poly(A)-specific ribonuclease PARN", "gene_name": "PARN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32969-1", "protein_name": "Large ribosomal subunit protein uL6", "gene_name": "RPL9P7; RPL9P8; RPL9P9; RPL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UFF9-1", "protein_name": "CCR4-NOT transcription complex subunit 8", "gene_name": "CNOT8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKZ1-1", "protein_name": "CCR4-NOT transcription complex subunit 11", "gene_name": "CNOT11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30050-1", "protein_name": "Large ribosomal subunit protein uL11", "gene_name": "RPL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q04637-1", "protein_name": "Eukaryotic translation initiation factor 4 gamma 1", "gene_name": "EIF4G1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62266-1", "protein_name": "Small ribosomal subunit protein uS12", "gene_name": "RPS23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46777-1", "protein_name": "Large ribosomal subunit protein uL18", "gene_name": "RPL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8BGF7-1", "protein_name": "PAN2-PAN3 deadenylation complex catalytic subunit Pan2", "gene_name": "Pan2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P23588-1", "protein_name": "Eukaryotic translation initiation factor 4B", "gene_name": "EIF4B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96Q15-1", "protein_name": "Serine/threonine-protein kinase SMG1", "gene_name": "SMG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62753-1", "protein_name": "Small ribosomal subunit protein eS6", "gene_name": "RPS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q58A45-1", "protein_name": "PAN2-PAN3 deadenylation complex subunit PAN3", "gene_name": "PAN3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27635-1", "protein_name": "Large ribosomal subunit protein uL16", "gene_name": "RPL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62913-1", "protein_name": "Large ribosomal subunit protein uL5", "gene_name": "RPL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36578-1", "protein_name": "Large ribosomal subunit protein uL4", "gene_name": "RPL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HAU5-1", "protein_name": "Regulator of nonsense transcripts 2", "gene_name": "UPF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5S9-1", "protein_name": "RNA-binding protein 8A", "gene_name": "RBM8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5VYS8-1", "protein_name": "Terminal uridylyltransferase 7", "gene_name": "TUT7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15234-1", "protein_name": "Protein CASC3", "gene_name": "CASC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05388-1", "protein_name": "Large ribosomal subunit protein uL10", "gene_name": "RPLP0", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46779-1", "protein_name": "Large ribosomal subunit protein eL28", "gene_name": "RPL28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62857-1", "protein_name": "Small ribosomal subunit protein eS28", "gene_name": "RPS28", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPJ4-1", "protein_name": "Proline-rich nuclear receptor coactivator 2", "gene_name": "PNRC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15170-1", "protein_name": "Eukaryotic peptide chain release factor GTP-binding subunit ERF3A", "gene_name": "GSPT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62495-1", "protein_name": "Eukaryotic peptide chain release factor subunit 1", "gene_name": "ETF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61313-1", "protein_name": "Large ribosomal subunit protein eL15", "gene_name": "RPL15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62081-1", "protein_name": "Small ribosomal subunit protein eS7", "gene_name": "RPS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71UM5-1", "protein_name": "Ribosomal protein eS27-like", "gene_name": "RPS27L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30153-1", "protein_name": "Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform", "gene_name": "PPP2R1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67775-1", "protein_name": "Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform", "gene_name": "PPP2CA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92900-1", "protein_name": "Regulator of nonsense transcripts 1", "gene_name": "UPF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P18621", "url": "https://www.uniprot.org/uniprotkb/P18621" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.16284618", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 139 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 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}, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Binding of a novel SMG-1-Upf1-eRF1-eRF3 complex (SURF) to the exon junction complex triggers Upf1 phosphorylation and nonsense-mediated mRNA decay.", "journal": "Genes & development", "date": "2006", "authors": "Kashima I, Yamashita A, Izumi N, Kataoka N, Morishita R, Hoshino S, Ohno M, Dreyfuss G, Ohno S", "reference": { "type": "PubMed", "id": "16452507", "url": "https://pubmed.ncbi.nlm.nih.gov/16452507" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P18621-1", "protein_name": "Large ribosomal subunit protein uL22", "gene_name": "RPL17", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H1J1-1", "protein_name": "Regulator of nonsense transcripts 3A", "gene_name": "UPF3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46776-1", "protein_name": "Large ribosomal subunit protein uL15", "gene_name": "RPL27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46782-1", "protein_name": "Small ribosomal subunit protein uS7", "gene_name": "RPS5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47914-1", "protein_name": "Large ribosomal subunit protein eL29", "gene_name": "RPL29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62244-1", "protein_name": "Small ribosomal subunit protein uS8", "gene_name": "RPS15A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22090-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 1", "gene_name": "RPS4Y1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P5R6-1", "protein_name": "Ribosomal protein eL22-like", "gene_name": "RPL22L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08708-1", "protein_name": "Small ribosomal subunit protein eS17", "gene_name": "RPS17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46783-1", "protein_name": "Small ribosomal subunit protein eS10", "gene_name": "RPS10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62917-1", "protein_name": "Large ribosomal subunit protein uL2", "gene_name": "RPL8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25398-1", "protein_name": "Small ribosomal subunit protein eS12", "gene_name": "RPS12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46781-1", "protein_name": "Small ribosomal subunit protein uS4", "gene_name": "RPS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62424-1", "protein_name": "Large ribosomal subunit protein eL8", "gene_name": "RPL7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62701-1", "protein_name": "Small ribosomal subunit protein eS4, X isoform", "gene_name": "RPS4X", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63220-1", "protein_name": "Small ribosomal subunit protein eS21", "gene_name": "RPS21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TD47-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 2", "gene_name": "RPS4Y2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11940-1", "protein_name": "Polyadenylate-binding protein 1", "gene_name": "PABPC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07020-1", "protein_name": "Large ribosomal subunit protein eL18", "gene_name": "RPL18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35268-1", "protein_name": "Large ribosomal subunit protein eL22", "gene_name": "RPL22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83881-1", "protein_name": "Large ribosomal subunit protein eL42", "gene_name": "RPL36A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61353-1", "protein_name": "Large ribosomal subunit protein eL27", "gene_name": "RPL27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNX3-1", "protein_name": "Ribosomal protein uL24-like", "gene_name": "RPL26L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02543-1", "protein_name": "Large ribosomal subunit protein eL20", "gene_name": "RPL18A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40429-1", "protein_name": "Large ribosomal subunit protein uL13", "gene_name": "RPL13A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63173-1", "protein_name": "Large ribosomal subunit protein eL38", "gene_name": "RPL38", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62910-1", "protein_name": "Large ribosomal subunit protein eL32", "gene_name": "RPL32", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39023-1", "protein_name": "Large ribosomal subunit protein uL3", "gene_name": "RPL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18077-1", "protein_name": "Large ribosomal subunit protein eL33", "gene_name": "RPL35A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61254-1", "protein_name": "Large ribosomal subunit protein uL24", "gene_name": "RPL26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84098-1", "protein_name": "Large ribosomal subunit protein eL19", "gene_name": "RPL19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62888-1", "protein_name": "Large ribosomal subunit protein eL30", "gene_name": "RPL30", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83731-1", "protein_name": "Large ribosomal subunit protein eL24", "gene_name": "RPL24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62899-1", "protein_name": "Large ribosomal subunit protein eL31", "gene_name": "RPL31", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62945-1", "protein_name": "Small ribosomal subunit protein eS32", "gene_name": "RPL41", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61927-1", "protein_name": "Large ribosomal subunit protein eL37", "gene_name": "RPL37", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42766-1", "protein_name": "Large ribosomal subunit protein uL29", "gene_name": "RPL35", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05387-1", "protein_name": "Large ribosomal subunit protein P2", "gene_name": "RPLP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92901-1", "protein_name": "Ribosomal protein uL3-like", "gene_name": "RPL3L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46778-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "RPL21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05386-1", "protein_name": "Large ribosomal subunit protein P1", "gene_name": "RPLP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49207-1", "protein_name": "Large ribosomal subunit protein eL34", "gene_name": "RPL34", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62891-1", "protein_name": "Large ribosomal subunit protein eL39", "gene_name": "RPL39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96L21-1", "protein_name": "Ribosomal protein uL16-like", "gene_name": "RPL10L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26373-1", "protein_name": "Large ribosomal subunit protein eL13", "gene_name": "RPL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86US8-1", "protein_name": "Telomerase-binding protein EST1A", "gene_name": "SMG6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYD1-1", "protein_name": "Eukaryotic peptide chain release factor GTP-binding subunit ERF3B", "gene_name": "GSPT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60866-1", "protein_name": "Small ribosomal subunit protein uS10", "gene_name": "RPS20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969Q0-1", "protein_name": "Ribosomal protein eL42-like", "gene_name": "RPL36AL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61247-1", "protein_name": "Small ribosomal subunit protein eS1", "gene_name": "RPS3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62854-1", "protein_name": "Small ribosomal subunit protein eS26", "gene_name": "RPS26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62851-1", "protein_name": "Small ribosomal subunit protein eS25", "gene_name": "RPS25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08865-1", "protein_name": "Small ribosomal subunit protein uS2", "gene_name": "RPSA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62847-1", "protein_name": "Small ribosomal subunit protein eS24", "gene_name": "RPS24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62861-1", "protein_name": "Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein", "gene_name": "FAU", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62241-1", "protein_name": "Small ribosomal subunit protein eS8", "gene_name": "RPS8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62277-1", "protein_name": "Small ribosomal subunit protein uS15", "gene_name": "RPS13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39019-1", "protein_name": "Small ribosomal subunit protein eS19", "gene_name": "RPS19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92540-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG7", "gene_name": "SMG7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPR3-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG5", "gene_name": "SMG5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62269-1", "protein_name": "Small ribosomal subunit protein uS13", "gene_name": "RPS18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02878-1", "protein_name": "Large ribosomal subunit protein eL6", "gene_name": "RPL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62273-1", "protein_name": "Small ribosomal subunit protein uS14", "gene_name": "RPS29", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8ND04-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG8", "gene_name": "SMG8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPI6-1", "protein_name": "mRNA-decapping enzyme 1A", "gene_name": "DCP1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42677-1", "protein_name": "Small ribosomal subunit protein eS27", "gene_name": "RPS27", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38919-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "EIF4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61326-1", "protein_name": "Protein mago nashi homolog", "gene_name": "MAGOH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EH5-1", "protein_name": "Ribosomal protein eL39-like 2", "gene_name": "RPL39L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15287-1", "protein_name": "RNA-binding protein with serine-rich domain 1", "gene_name": "RNPS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0W8-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG9", "gene_name": "SMG9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62263-1", "protein_name": "Small ribosomal subunit protein uS11", "gene_name": "RPS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61513-1", "protein_name": "Large ribosomal subunit protein eL43", "gene_name": "RPL37A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18124-1", "protein_name": "Large ribosomal subunit protein uL30", "gene_name": "RPL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZI7-1", "protein_name": "Regulator of nonsense transcripts 3B", "gene_name": "UPF3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15880-1", "protein_name": "Small ribosomal subunit protein uS5", "gene_name": "RPS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62750-1", "protein_name": "Large ribosomal subunit protein uL23", "gene_name": "RPL23A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62280-1", "protein_name": "Small ribosomal subunit protein uS17", "gene_name": "RPS11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62249-1", "protein_name": "Small ribosomal subunit protein uS9", "gene_name": "RPS16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50914-1", "protein_name": "Large ribosomal subunit protein eL14", "gene_name": "RPL14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62906-1", "protein_name": "Large ribosomal subunit protein uL1", "gene_name": "RPL10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23396-1", "protein_name": "Small ribosomal subunit protein uS3", "gene_name": "RPS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63151-1", "protein_name": "Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform", "gene_name": "PPP2R2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A72-1", "protein_name": "Protein mago nashi homolog 2", "gene_name": "MAGOHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62841-1", "protein_name": "Small ribosomal subunit protein uS19", "gene_name": "RPS15", "tax_name": "Human" }, { "uniprot_canonical_ac": "C0HME6-1", "protein_name": "RPL36 alternative reading frame protein", "gene_name": "RPL36", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62829-1", "protein_name": "Large ribosomal subunit protein uL14", "gene_name": "RPL23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32969-1", "protein_name": "Large ribosomal subunit protein uL6", "gene_name": "RPL9P7; RPL9P8; RPL9P9; RPL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30050-1", "protein_name": "Large ribosomal subunit protein uL11", "gene_name": "RPL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q04637-1", "protein_name": "Eukaryotic translation initiation factor 4 gamma 1", "gene_name": "EIF4G1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62266-1", "protein_name": "Small ribosomal subunit protein uS12", "gene_name": "RPS23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46777-1", "protein_name": "Large ribosomal subunit protein uL18", "gene_name": "RPL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96Q15-1", "protein_name": "Serine/threonine-protein kinase SMG1", "gene_name": "SMG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62753-1", "protein_name": "Small ribosomal subunit protein eS6", "gene_name": "RPS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27635-1", "protein_name": "Large ribosomal subunit protein uL16", "gene_name": "RPL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62913-1", "protein_name": "Large ribosomal subunit protein uL5", "gene_name": "RPL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36578-1", "protein_name": "Large ribosomal subunit protein uL4", "gene_name": "RPL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HAU5-1", "protein_name": "Regulator of nonsense transcripts 2", "gene_name": "UPF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5S9-1", "protein_name": "RNA-binding protein 8A", "gene_name": "RBM8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15234-1", "protein_name": "Protein CASC3", "gene_name": "CASC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05388-1", "protein_name": "Large ribosomal subunit protein uL10", "gene_name": "RPLP0", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46779-1", "protein_name": "Large ribosomal subunit protein eL28", "gene_name": "RPL28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62857-1", "protein_name": "Small ribosomal subunit protein eS28", "gene_name": "RPS28", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPJ4-1", "protein_name": "Proline-rich nuclear receptor coactivator 2", "gene_name": "PNRC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15170-1", "protein_name": "Eukaryotic peptide chain release factor GTP-binding subunit ERF3A", "gene_name": "GSPT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62495-1", "protein_name": "Eukaryotic peptide chain release factor subunit 1", "gene_name": "ETF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61313-1", "protein_name": "Large ribosomal subunit protein eL15", "gene_name": "RPL15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62081-1", "protein_name": "Small ribosomal subunit protein eS7", "gene_name": "RPS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71UM5-1", "protein_name": "Ribosomal protein eS27-like", "gene_name": "RPS27L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30153-1", "protein_name": "Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform", "gene_name": "PPP2R1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67775-1", "protein_name": "Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform", "gene_name": "PPP2CA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92900-1", "protein_name": "Regulator of nonsense transcripts 1", "gene_name": "UPF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P18621", "url": "https://www.uniprot.org/uniprotkb/P18621" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 858, "end_pos": 858, "sequence_org": "E", "sequence_mut": "R", "comment": "Abolishes interaction with UPF3B and association with SMG1 and RBM8A; reduces phosphorylation of UPF1.", "evidence": [ { "database": "UniProtKB", "id": "Q9HAU5", "url": "https://www.uniprot.org/uniprotkb/Q9HAU5" }, { "database": "PubMed", "id": "15004547", "url": "https://pubmed.ncbi.nlm.nih.gov/15004547" }, { "database": "PubMed", "id": "16452507", "url": "https://pubmed.ncbi.nlm.nih.gov/16452507" } ], "uniprot_canonical_ac": "Q9HAU5-1" }, { "start_pos": 1084, "end_pos": 1084, "sequence_org": "S", "sequence_mut": "A", "comment": "Impairs association with UPF2, SMG1 and SMG7 and impairs phosphorylation; when associated with A-1089, A-1107 and A-1127.", "evidence": [ { "database": "UniProtKB", "id": "Q92900", "url": "https://www.uniprot.org/uniprotkb/Q92900" }, { "database": "PubMed", "id": "16452507", "url": "https://pubmed.ncbi.nlm.nih.gov/16452507" } ], "uniprot_canonical_ac": "Q92900-1" }, { "start_pos": 1089, "end_pos": 1089, "sequence_org": "S", "sequence_mut": "A", "comment": "Impairs association with UPF2, SMG1 and SMG7 and impairs phosphorylation; when associated with A-1084, A-1107 and A-1127.", "evidence": [ { "database": "UniProtKB", "id": "Q92900", "url": "https://www.uniprot.org/uniprotkb/Q92900" }, { "database": "PubMed", "id": "11544179", "url": "https://pubmed.ncbi.nlm.nih.gov/11544179" }, { "database": "PubMed", "id": "16452507", "url": "https://pubmed.ncbi.nlm.nih.gov/16452507" } ], "uniprot_canonical_ac": "Q92900-1" }, { "start_pos": 1089, "end_pos": 1089, "sequence_org": "S", "sequence_mut": "A", "comment": "Still phosphorylated but with less efficiency.", "evidence": [ { "database": "UniProtKB", "id": "Q92900", "url": "https://www.uniprot.org/uniprotkb/Q92900" }, { "database": "PubMed", "id": "11544179", "url": "https://pubmed.ncbi.nlm.nih.gov/11544179" }, { "database": "PubMed", "id": "16452507", "url": "https://pubmed.ncbi.nlm.nih.gov/16452507" } ], "uniprot_canonical_ac": "Q92900-1" }, { "start_pos": 1107, "end_pos": 1107, "sequence_org": "S", "sequence_mut": "A", "comment": "Impairs association with UPF2, SMG1 and SMG7 and impairs phosphorylation; when associated with A-1084, A-1089 and A-1127.", "evidence": [ { "database": "UniProtKB", "id": "Q92900", "url": "https://www.uniprot.org/uniprotkb/Q92900" }, { "database": "PubMed", "id": "11544179", "url": "https://pubmed.ncbi.nlm.nih.gov/11544179" }, { "database": "PubMed", "id": "16452507", "url": "https://pubmed.ncbi.nlm.nih.gov/16452507" } ], "uniprot_canonical_ac": "Q92900-1" }, { "start_pos": 1107, "end_pos": 1107, "sequence_org": "S", "sequence_mut": "A", "comment": "Impairs phosphorylation.", "evidence": [ { "database": "UniProtKB", "id": "Q92900", "url": "https://www.uniprot.org/uniprotkb/Q92900" }, { "database": "PubMed", "id": "11544179", "url": "https://pubmed.ncbi.nlm.nih.gov/11544179" }, { "database": "PubMed", "id": "16452507", "url": "https://pubmed.ncbi.nlm.nih.gov/16452507" } ], "uniprot_canonical_ac": "Q92900-1" }, { "start_pos": 1127, "end_pos": 1127, "sequence_org": "S", "sequence_mut": "A", "comment": "Impairs association with UPF2, SMG1 and SMG7 and impairs phosphorylation; when associated with A-1084, A-1089 and A-1107.", "evidence": [ { "database": "UniProtKB", "id": "Q92900", "url": "https://www.uniprot.org/uniprotkb/Q92900" }, { "database": "PubMed", "id": "16452507", "url": "https://pubmed.ncbi.nlm.nih.gov/16452507" } ], "uniprot_canonical_ac": "Q92900-1" }, { "start_pos": 126, "end_pos": 126, "sequence_org": "C", "sequence_mut": "S", "comment": "Abolishes ability to interact with UPF2/RENT2 and copurifies with greater amounts of SMG1, SMG8 and SMG9. Increases interaction with DHX34. No effect on interaction with SMG1-DHX34-UPF1 complex.", "evidence": [ { "database": "UniProtKB", "id": "Q92900", "url": "https://www.uniprot.org/uniprotkb/Q92900" }, { "database": "PubMed", "id": "19417104", "url": "https://pubmed.ncbi.nlm.nih.gov/19417104" }, { "database": "PubMed", "id": "16452507", "url": "https://pubmed.ncbi.nlm.nih.gov/16452507" }, { "database": "PubMed", "id": "26841701", "url": "https://pubmed.ncbi.nlm.nih.gov/26841701" }, { "database": "PubMed", "id": "25220460", "url": "https://pubmed.ncbi.nlm.nih.gov/25220460" } ], "uniprot_canonical_ac": "Q92900-1" }, { "start_pos": 509, "end_pos": 509, "sequence_org": "K", "sequence_mut": "A", "comment": "Inhibits histone mRNA degradation, ATPase activity and ATP binding. No effect on interaction with DHX34.", "evidence": [ { "database": "UniProtKB", "id": "Q92900", "url": "https://www.uniprot.org/uniprotkb/Q92900" }, { "database": "PubMed", "id": "17159905", "url": "https://pubmed.ncbi.nlm.nih.gov/17159905" }, { "database": "PubMed", "id": "16086026", "url": "https://pubmed.ncbi.nlm.nih.gov/16086026" }, { "database": "PubMed", "id": "16452507", "url": "https://pubmed.ncbi.nlm.nih.gov/16452507" }, { "database": "PubMed", "id": "25220460", "url": "https://pubmed.ncbi.nlm.nih.gov/25220460" }, { "database": "PubMed", "id": "18066079", "url": "https://pubmed.ncbi.nlm.nih.gov/18066079" } ], "uniprot_canonical_ac": "Q92900-1" } ], "phosphorylation": [ { "start_pos": 1089, "end_pos": 1089, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q92900", "url": "https://www.uniprot.org/uniprotkb/Q92900" }, { "database": "PubMed", "id": "16452507", "url": 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"url": "https://pubmed.ncbi.nlm.nih.gov/18669648" }, { "database": "PubMed", "id": "11544179", "url": "https://pubmed.ncbi.nlm.nih.gov/11544179" }, { "database": "PubMed", "id": "20068231", "url": "https://pubmed.ncbi.nlm.nih.gov/20068231" }, { "database": "PubMed", "id": "17525332", "url": "https://pubmed.ncbi.nlm.nih.gov/17525332" }, { "database": "PubMed", "id": "21406692", "url": "https://pubmed.ncbi.nlm.nih.gov/21406692" }, { "database": "PRO", "id": "Q92900", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=Q92900" }, { "database": "iPTMnet", "id": "Q92900", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q92900" } ], "site_lbl": "Ser1107", "uniprot_canonical_ac": "Q92900-1" } ], "record_id": "pubmed.16452507", "abstract": "", "glycosylation": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 116 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Human autoantibodies against the 54 kDa protein of the signal recognition particle block function at multiple stages.", "journal": "Arthritis research & therapy", "date": "2006", "authors": "Romisch K, Miller FW, Dobberstein B, High S", "reference": { "type": "PubMed", "id": "16469117", "url": "https://pubmed.ncbi.nlm.nih.gov/16469117" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P18621-1", "protein_name": "Large ribosomal subunit protein uL22", "gene_name": "RPL17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46776-1", "protein_name": "Large ribosomal subunit protein uL15", "gene_name": "RPL27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46782-1", "protein_name": "Small ribosomal subunit protein uS7", "gene_name": "RPS5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47914-1", "protein_name": "Large ribosomal subunit protein eL29", "gene_name": "RPL29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62244-1", "protein_name": "Small ribosomal subunit protein uS8", "gene_name": "RPS15A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22090-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 1", "gene_name": "RPS4Y1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P5R6-1", "protein_name": "Ribosomal protein eL22-like", "gene_name": "RPL22L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08708-1", "protein_name": "Small ribosomal subunit protein eS17", "gene_name": "RPS17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67812-1", "protein_name": "Signal peptidase complex catalytic subunit SEC11A", "gene_name": "SEC11A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46783-1", "protein_name": "Small ribosomal subunit protein eS10", "gene_name": "RPS10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62917-1", "protein_name": "Large ribosomal subunit protein uL2", "gene_name": "RPL8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25398-1", "protein_name": "Small ribosomal subunit protein eS12", "gene_name": "RPS12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46781-1", "protein_name": "Small ribosomal subunit protein uS4", "gene_name": "RPS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62424-1", "protein_name": "Large ribosomal subunit protein eL8", "gene_name": "RPL7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62701-1", "protein_name": "Small ribosomal subunit protein eS4, X isoform", "gene_name": "RPS4X", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63220-1", "protein_name": "Small ribosomal subunit protein eS21", "gene_name": "RPS21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TD47-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 2", "gene_name": "RPS4Y2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07020-1", "protein_name": "Large ribosomal subunit protein eL18", "gene_name": "RPL18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35268-1", "protein_name": "Large ribosomal subunit protein eL22", "gene_name": "RPL22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83881-1", "protein_name": "Large ribosomal subunit protein eL42", "gene_name": "RPL36A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61353-1", "protein_name": "Large ribosomal subunit protein eL27", "gene_name": "RPL27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNX3-1", "protein_name": "Ribosomal protein uL24-like", "gene_name": "RPL26L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02543-1", "protein_name": "Large ribosomal subunit protein eL20", "gene_name": "RPL18A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40429-1", "protein_name": "Large ribosomal subunit protein uL13", "gene_name": "RPL13A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63173-1", "protein_name": "Large ribosomal subunit protein eL38", "gene_name": "RPL38", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62910-1", "protein_name": "Large ribosomal subunit protein eL32", "gene_name": "RPL32", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39023-1", "protein_name": "Large ribosomal subunit protein uL3", "gene_name": "RPL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18077-1", "protein_name": "Large ribosomal subunit protein eL33", "gene_name": "RPL35A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61254-1", "protein_name": "Large ribosomal subunit protein uL24", "gene_name": "RPL26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84098-1", "protein_name": "Large ribosomal subunit protein eL19", "gene_name": "RPL19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62888-1", "protein_name": "Large ribosomal subunit protein eL30", "gene_name": "RPL30", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83731-1", "protein_name": "Large ribosomal subunit protein eL24", "gene_name": "RPL24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62899-1", "protein_name": "Large ribosomal subunit protein eL31", "gene_name": "RPL31", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62945-1", "protein_name": "Small ribosomal subunit protein eS32", "gene_name": "RPL41", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61927-1", "protein_name": "Large ribosomal subunit protein eL37", "gene_name": "RPL37", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42766-1", "protein_name": "Large ribosomal subunit protein uL29", "gene_name": "RPL35", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05387-1", "protein_name": "Large ribosomal subunit protein P2", "gene_name": "RPLP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92901-1", "protein_name": "Ribosomal protein uL3-like", "gene_name": "RPL3L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46778-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "RPL21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05386-1", "protein_name": "Large ribosomal subunit protein P1", "gene_name": "RPLP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49207-1", "protein_name": "Large ribosomal subunit protein eL34", "gene_name": "RPL34", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62891-1", "protein_name": "Large ribosomal subunit protein eL39", "gene_name": "RPL39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96L21-1", "protein_name": "Ribosomal protein uL16-like", "gene_name": "RPL10L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26373-1", "protein_name": "Large ribosomal subunit protein eL13", "gene_name": "RPL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60866-1", "protein_name": "Small ribosomal subunit protein uS10", "gene_name": "RPS20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969Q0-1", "protein_name": "Ribosomal protein eL42-like", "gene_name": "RPL36AL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61247-1", "protein_name": "Small ribosomal subunit protein eS1", "gene_name": "RPS3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62854-1", "protein_name": "Small ribosomal subunit protein eS26", "gene_name": "RPS26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62851-1", "protein_name": "Small ribosomal subunit protein eS25", "gene_name": "RPS25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08865-1", "protein_name": "Small ribosomal subunit protein uS2", "gene_name": "RPSA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62847-1", "protein_name": "Small ribosomal subunit protein eS24", "gene_name": "RPS24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62861-1", "protein_name": "Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein", "gene_name": "FAU", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62241-1", "protein_name": "Small ribosomal subunit protein eS8", "gene_name": "RPS8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39656-1", "protein_name": "Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit", "gene_name": "DDOST", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62277-1", "protein_name": "Small ribosomal subunit protein uS15", "gene_name": "RPS13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39019-1", "protein_name": "Small ribosomal subunit protein eS19", "gene_name": "RPS19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H9S3-1", "protein_name": "Protein transport protein Sec61 subunit alpha isoform 2", "gene_name": "SEC61A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62269-1", "protein_name": "Small ribosomal subunit protein uS13", "gene_name": "RPS18", "tax_name": "Human" }, { "uniprot_canonical_ac": "O76094-1", "protein_name": "Signal recognition particle subunit SRP72", "gene_name": "SRP72", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHB9-1", "protein_name": "Signal recognition particle subunit SRP68", "gene_name": "SRP68", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09132-1", "protein_name": "Signal recognition particle 19 kDa protein", "gene_name": "SRP19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04844-1", "protein_name": "Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2", "gene_name": "RPN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02878-1", "protein_name": "Large ribosomal subunit protein eL6", "gene_name": "RPL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62273-1", "protein_name": "Small ribosomal subunit protein uS14", "gene_name": "RPS29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04843-1", "protein_name": "Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1", "gene_name": "RPN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15629-1", "protein_name": "Translocating chain-associated membrane protein 1", "gene_name": "TRAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42677-1", "protein_name": "Small ribosomal subunit protein eS27", "gene_name": "RPS27", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60468-1", "protein_name": "Protein transport protein Sec61 subunit beta", "gene_name": "SEC61B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EH5-1", "protein_name": "Ribosomal protein eL39-like 2", "gene_name": "RPL39L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62263-1", "protein_name": "Small ribosomal subunit protein uS11", "gene_name": "RPS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61513-1", "protein_name": "Large ribosomal subunit protein eL43", "gene_name": "RPL37A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18124-1", "protein_name": "Large ribosomal subunit protein uL30", "gene_name": "RPL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNL2-1", "protein_name": "Translocon-associated protein subunit gamma", "gene_name": "SSR3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15880-1", "protein_name": "Small ribosomal subunit protein uS5", "gene_name": "RPS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62750-1", "protein_name": "Large ribosomal subunit protein uL23", "gene_name": "RPL23A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62280-1", "protein_name": "Small ribosomal subunit protein uS17", "gene_name": "RPS11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62249-1", "protein_name": "Small ribosomal subunit protein uS9", "gene_name": "RPS16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50914-1", "protein_name": "Large ribosomal subunit protein eL14", "gene_name": "RPL14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62906-1", "protein_name": "Large ribosomal subunit protein uL1", "gene_name": "RPL10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P43307-1", "protein_name": "Translocon-associated protein subunit alpha", "gene_name": "SSR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23396-1", "protein_name": "Small ribosomal subunit protein uS3", "gene_name": "RPS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49458-1", "protein_name": "Signal recognition particle 9 kDa protein", "gene_name": "SRP9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62841-1", "protein_name": "Small ribosomal subunit protein uS19", "gene_name": "RPS15", "tax_name": "Human" }, { "uniprot_canonical_ac": "C0HME6-1", "protein_name": "RPL36 alternative reading frame protein", "gene_name": "RPL36", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62829-1", "protein_name": "Large ribosomal subunit protein uL14", "gene_name": "RPL23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32969-1", "protein_name": "Large ribosomal subunit protein uL6", "gene_name": "RPL9P7; RPL9P8; RPL9P9; RPL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61619-1", "protein_name": "Protein transport protein Sec61 subunit alpha isoform 1", "gene_name": "SEC61A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30050-1", "protein_name": "Large ribosomal subunit protein uL11", "gene_name": "RPL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62266-1", "protein_name": "Small ribosomal subunit protein uS12", "gene_name": "RPS23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46777-1", "protein_name": "Large ribosomal subunit protein uL18", "gene_name": "RPL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62753-1", "protein_name": "Small ribosomal subunit protein eS6", "gene_name": "RPS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60059-1", "protein_name": "Protein transport protein Sec61 subunit gamma", "gene_name": "SEC61G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27635-1", "protein_name": "Large ribosomal subunit protein uL16", "gene_name": "RPL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62913-1", "protein_name": "Large ribosomal subunit protein uL5", "gene_name": "RPL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36578-1", "protein_name": "Large ribosomal subunit protein uL4", "gene_name": "RPL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08240-1", "protein_name": "Signal recognition particle receptor subunit alpha", "gene_name": "SRPRA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61011-1", "protein_name": "Signal recognition particle subunit SRP54", "gene_name": "SRP54", "tax_name": "Human" }, { "uniprot_canonical_ac": "P43308-1", "protein_name": "Translocon-associated protein subunit beta", "gene_name": "SSR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P37108-1", "protein_name": "Signal recognition particle 14 kDa protein", "gene_name": "SRP14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5M8-1", "protein_name": "Signal recognition particle receptor subunit beta", "gene_name": "SRPRB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51571-1", "protein_name": "Translocon-associated protein subunit delta", "gene_name": "SSR4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61009-1", "protein_name": "Signal peptidase complex subunit 3", "gene_name": "SPCS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6A9-1", "protein_name": "Signal peptidase complex subunit 1", "gene_name": "SPCS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05388-1", "protein_name": "Large ribosomal subunit protein uL10", "gene_name": "RPLP0", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46779-1", "protein_name": "Large ribosomal subunit protein eL28", "gene_name": "RPL28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62857-1", "protein_name": "Small ribosomal subunit protein eS28", "gene_name": "RPS28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61313-1", "protein_name": "Large ribosomal subunit protein eL15", "gene_name": "RPL15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62081-1", "protein_name": "Small ribosomal subunit protein eS7", "gene_name": "RPS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71UM5-1", "protein_name": "Ribosomal protein eS27-like", "gene_name": "RPS27L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BY50-1", "protein_name": "Signal peptidase complex catalytic subunit SEC11C", "gene_name": "SEC11C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15005-1", "protein_name": "Signal peptidase complex subunit 2", "gene_name": "SPCS2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P18621", "url": "https://www.uniprot.org/uniprotkb/P18621" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.16469117", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 113 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Functions of hUpf3a and hUpf3b in nonsense-mediated mRNA decay and translation.", "journal": "RNA (New York, N.Y.)", "date": "2006", "authors": "Kunz JB, Neu-Yilik G, Hentze MW, Kulozik AE, Gehring NH", "reference": { "type": "PubMed", "id": "16601204", "url": "https://pubmed.ncbi.nlm.nih.gov/16601204" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P18621-1", "protein_name": "Large ribosomal subunit protein uL22", "gene_name": "RPL17", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H1J1-1", "protein_name": "Regulator of nonsense transcripts 3A", "gene_name": "UPF3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46776-1", "protein_name": "Large ribosomal subunit protein uL15", "gene_name": "RPL27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46782-1", "protein_name": "Small ribosomal subunit protein uS7", "gene_name": "RPS5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47914-1", "protein_name": "Large ribosomal subunit protein eL29", "gene_name": "RPL29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62244-1", "protein_name": "Small ribosomal subunit protein uS8", "gene_name": "RPS15A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22090-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 1", "gene_name": "RPS4Y1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P5R6-1", "protein_name": "Ribosomal protein eL22-like", "gene_name": "RPL22L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08708-1", "protein_name": "Small ribosomal subunit protein eS17", "gene_name": "RPS17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46783-1", "protein_name": "Small ribosomal subunit protein eS10", "gene_name": "RPS10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62917-1", "protein_name": "Large ribosomal subunit protein uL2", "gene_name": "RPL8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25398-1", "protein_name": "Small ribosomal subunit protein eS12", "gene_name": "RPS12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46781-1", "protein_name": "Small ribosomal subunit protein uS4", "gene_name": "RPS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62424-1", "protein_name": "Large ribosomal subunit protein eL8", "gene_name": "RPL7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62701-1", "protein_name": "Small ribosomal subunit protein eS4, X isoform", "gene_name": "RPS4X", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63220-1", "protein_name": "Small ribosomal subunit protein eS21", "gene_name": "RPS21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TD47-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 2", "gene_name": "RPS4Y2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11940-1", "protein_name": "Polyadenylate-binding protein 1", "gene_name": "PABPC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07020-1", "protein_name": "Large ribosomal subunit protein eL18", "gene_name": "RPL18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35268-1", "protein_name": "Large ribosomal subunit protein eL22", "gene_name": "RPL22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83881-1", "protein_name": "Large ribosomal subunit protein eL42", "gene_name": "RPL36A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61353-1", "protein_name": "Large ribosomal subunit protein eL27", "gene_name": "RPL27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNX3-1", "protein_name": "Ribosomal protein uL24-like", "gene_name": "RPL26L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02543-1", "protein_name": "Large ribosomal subunit protein eL20", "gene_name": "RPL18A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40429-1", "protein_name": "Large ribosomal subunit protein uL13", "gene_name": "RPL13A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63173-1", "protein_name": "Large ribosomal subunit protein eL38", "gene_name": "RPL38", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62910-1", "protein_name": "Large ribosomal subunit protein eL32", "gene_name": "RPL32", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39023-1", "protein_name": "Large ribosomal subunit protein uL3", "gene_name": "RPL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18077-1", "protein_name": "Large ribosomal subunit protein eL33", "gene_name": "RPL35A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61254-1", "protein_name": "Large ribosomal subunit protein uL24", "gene_name": "RPL26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84098-1", "protein_name": "Large ribosomal subunit protein eL19", "gene_name": "RPL19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62888-1", "protein_name": "Large ribosomal subunit protein eL30", "gene_name": "RPL30", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83731-1", "protein_name": "Large ribosomal subunit protein eL24", "gene_name": "RPL24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62899-1", "protein_name": "Large ribosomal subunit protein eL31", "gene_name": "RPL31", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62945-1", "protein_name": "Small ribosomal subunit protein eS32", "gene_name": "RPL41", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61927-1", "protein_name": "Large ribosomal subunit protein eL37", "gene_name": "RPL37", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42766-1", "protein_name": "Large ribosomal subunit protein uL29", "gene_name": "RPL35", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05387-1", "protein_name": "Large ribosomal subunit protein P2", "gene_name": "RPLP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92901-1", "protein_name": "Ribosomal protein uL3-like", "gene_name": "RPL3L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46778-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "RPL21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05386-1", "protein_name": "Large ribosomal subunit protein P1", "gene_name": "RPLP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49207-1", "protein_name": "Large ribosomal subunit protein eL34", "gene_name": "RPL34", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62891-1", "protein_name": "Large ribosomal subunit protein eL39", "gene_name": "RPL39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96L21-1", "protein_name": "Ribosomal protein uL16-like", "gene_name": "RPL10L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26373-1", "protein_name": "Large ribosomal subunit protein eL13", "gene_name": "RPL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "B0S733-1", "protein_name": "Regulator of nonsense transcripts 3A", "gene_name": "upf3a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q86US8-1", "protein_name": "Telomerase-binding protein EST1A", "gene_name": "SMG6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYD1-1", "protein_name": "Eukaryotic peptide chain release factor GTP-binding subunit ERF3B", "gene_name": "GSPT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60866-1", "protein_name": "Small ribosomal subunit protein uS10", "gene_name": "RPS20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969Q0-1", "protein_name": "Ribosomal protein eL42-like", "gene_name": "RPL36AL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61247-1", "protein_name": "Small ribosomal subunit protein eS1", "gene_name": "RPS3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62854-1", "protein_name": "Small ribosomal subunit protein eS26", "gene_name": "RPS26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62851-1", "protein_name": "Small ribosomal subunit protein eS25", "gene_name": "RPS25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08865-1", "protein_name": "Small ribosomal subunit protein uS2", "gene_name": "RPSA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62847-1", "protein_name": "Small ribosomal subunit protein eS24", "gene_name": "RPS24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62861-1", "protein_name": "Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein", "gene_name": "FAU", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62241-1", "protein_name": "Small ribosomal subunit protein eS8", "gene_name": "RPS8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62277-1", "protein_name": "Small ribosomal subunit protein uS15", "gene_name": "RPS13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39019-1", "protein_name": "Small ribosomal subunit protein eS19", "gene_name": "RPS19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92540-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG7", "gene_name": "SMG7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPR3-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG5", "gene_name": "SMG5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62269-1", "protein_name": "Small ribosomal subunit protein uS13", "gene_name": "RPS18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02878-1", "protein_name": "Large ribosomal subunit protein eL6", "gene_name": "RPL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62273-1", "protein_name": "Small ribosomal subunit protein uS14", "gene_name": "RPS29", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8ND04-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG8", "gene_name": "SMG8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPI6-1", "protein_name": "mRNA-decapping enzyme 1A", "gene_name": "DCP1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42677-1", "protein_name": "Small ribosomal subunit protein eS27", "gene_name": "RPS27", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38919-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "EIF4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61326-1", "protein_name": "Protein mago nashi homolog", "gene_name": "MAGOH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EH5-1", "protein_name": "Ribosomal protein eL39-like 2", "gene_name": "RPL39L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15287-1", "protein_name": "RNA-binding protein with serine-rich domain 1", "gene_name": "RNPS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0W8-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG9", "gene_name": "SMG9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62263-1", "protein_name": "Small ribosomal subunit protein uS11", "gene_name": "RPS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61513-1", "protein_name": "Large ribosomal subunit protein eL43", "gene_name": "RPL37A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18124-1", "protein_name": "Large ribosomal subunit protein uL30", "gene_name": "RPL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZI7-1", "protein_name": "Regulator of nonsense transcripts 3B", "gene_name": "UPF3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15880-1", "protein_name": "Small ribosomal subunit protein uS5", "gene_name": "RPS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62750-1", "protein_name": "Large ribosomal subunit protein uL23", "gene_name": "RPL23A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62280-1", "protein_name": "Small ribosomal subunit protein uS17", "gene_name": "RPS11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62249-1", "protein_name": "Small ribosomal subunit protein uS9", "gene_name": "RPS16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50914-1", "protein_name": "Large ribosomal subunit protein eL14", "gene_name": "RPL14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62906-1", "protein_name": "Large ribosomal subunit protein uL1", "gene_name": "RPL10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23396-1", "protein_name": "Small ribosomal subunit protein uS3", "gene_name": "RPS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63151-1", "protein_name": "Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform", "gene_name": "PPP2R2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A72-1", "protein_name": "Protein mago nashi homolog 2", "gene_name": "MAGOHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62841-1", "protein_name": "Small ribosomal subunit protein uS19", "gene_name": "RPS15", "tax_name": "Human" }, { "uniprot_canonical_ac": "C0HME6-1", "protein_name": "RPL36 alternative reading frame protein", "gene_name": "RPL36", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62829-1", "protein_name": "Large ribosomal subunit protein uL14", "gene_name": "RPL23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32969-1", "protein_name": "Large ribosomal subunit protein uL6", "gene_name": "RPL9P7; RPL9P8; RPL9P9; RPL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30050-1", "protein_name": "Large ribosomal subunit protein uL11", "gene_name": "RPL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q04637-1", "protein_name": "Eukaryotic translation initiation factor 4 gamma 1", "gene_name": "EIF4G1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62266-1", "protein_name": "Small ribosomal subunit protein uS12", "gene_name": "RPS23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46777-1", "protein_name": "Large ribosomal subunit protein uL18", "gene_name": "RPL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96Q15-1", "protein_name": "Serine/threonine-protein kinase SMG1", "gene_name": "SMG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62753-1", "protein_name": "Small ribosomal subunit protein eS6", "gene_name": "RPS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27635-1", "protein_name": "Large ribosomal subunit protein uL16", "gene_name": "RPL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62913-1", "protein_name": "Large ribosomal subunit protein uL5", "gene_name": "RPL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36578-1", "protein_name": "Large ribosomal subunit protein uL4", "gene_name": "RPL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HAU5-1", "protein_name": "Regulator of nonsense transcripts 2", "gene_name": "UPF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5S9-1", "protein_name": "RNA-binding protein 8A", "gene_name": "RBM8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15234-1", "protein_name": "Protein CASC3", "gene_name": "CASC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05388-1", "protein_name": "Large ribosomal subunit protein uL10", "gene_name": "RPLP0", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46779-1", "protein_name": "Large ribosomal subunit protein eL28", "gene_name": "RPL28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62857-1", "protein_name": "Small ribosomal subunit protein eS28", "gene_name": "RPS28", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPJ4-1", "protein_name": "Proline-rich nuclear receptor coactivator 2", "gene_name": "PNRC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15170-1", "protein_name": "Eukaryotic peptide chain release factor GTP-binding subunit ERF3A", "gene_name": "GSPT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62495-1", "protein_name": "Eukaryotic peptide chain release factor subunit 1", "gene_name": "ETF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61313-1", "protein_name": "Large ribosomal subunit protein eL15", "gene_name": "RPL15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62081-1", "protein_name": "Small ribosomal subunit protein eS7", "gene_name": "RPS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71UM5-1", "protein_name": "Ribosomal protein eS27-like", "gene_name": "RPS27L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30153-1", "protein_name": "Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform", "gene_name": "PPP2R1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67775-1", "protein_name": "Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform", "gene_name": "PPP2CA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92900-1", "protein_name": "Regulator of nonsense transcripts 1", "gene_name": "UPF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P18621", "url": "https://www.uniprot.org/uniprotkb/P18621" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 432, "end_pos": 432, "sequence_org": "A", "sequence_mut": "R", "comment": "Increases NMD activity and translation stimulation.", "evidence": [ { "database": "UniProtKB", "id": "Q9H1J1", "url": "https://www.uniprot.org/uniprotkb/Q9H1J1" }, { "database": "PubMed", "id": "16601204", "url": "https://pubmed.ncbi.nlm.nih.gov/16601204" } ], "uniprot_canonical_ac": "Q9H1J1-1" }, { "start_pos": 432, "end_pos": 432, "sequence_org": "R", "sequence_mut": "A", "comment": "Reduces NMD.", "evidence": [ { "database": "UniProtKB", "id": "Q9BZI7", "url": "https://www.uniprot.org/uniprotkb/Q9BZI7" }, { "database": "PubMed", "id": "16601204", "url": "https://pubmed.ncbi.nlm.nih.gov/16601204" }, { "database": "PubMed", "id": "12718880", "url": "https://pubmed.ncbi.nlm.nih.gov/12718880" } ], "uniprot_canonical_ac": "Q9BZI7-1" } ], "record_id": "pubmed.16601204", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 117 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "EJC-independent degradation of nonsense immunoglobulin-mu mRNA depends on 3' UTR length.", "journal": "Nature structural & molecular biology", "date": "2006", "authors": "Buhler M, Steiner S, Mohn F, Paillusson A, Muhlemann O", "reference": { "type": "PubMed", "id": "16622410", "url": "https://pubmed.ncbi.nlm.nih.gov/16622410" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P18621-1", "protein_name": "Large ribosomal subunit protein uL22", "gene_name": "RPL17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46776-1", "protein_name": "Large ribosomal subunit protein uL15", "gene_name": "RPL27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46782-1", "protein_name": "Small ribosomal subunit protein uS7", "gene_name": "RPS5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47914-1", "protein_name": "Large ribosomal subunit protein eL29", "gene_name": "RPL29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62244-1", "protein_name": "Small ribosomal subunit protein uS8", "gene_name": "RPS15A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22090-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 1", "gene_name": "RPS4Y1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P5R6-1", "protein_name": "Ribosomal protein eL22-like", "gene_name": "RPL22L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08708-1", "protein_name": "Small ribosomal subunit protein eS17", "gene_name": "RPS17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46783-1", "protein_name": "Small ribosomal subunit protein eS10", "gene_name": "RPS10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62917-1", "protein_name": "Large ribosomal subunit protein uL2", "gene_name": "RPL8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25398-1", "protein_name": "Small ribosomal subunit protein eS12", "gene_name": "RPS12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46781-1", "protein_name": "Small ribosomal subunit protein uS4", "gene_name": "RPS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62424-1", "protein_name": "Large ribosomal subunit protein eL8", "gene_name": "RPL7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62701-1", "protein_name": "Small ribosomal subunit protein eS4, X isoform", "gene_name": "RPS4X", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63220-1", "protein_name": "Small ribosomal subunit protein eS21", "gene_name": "RPS21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TD47-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 2", "gene_name": "RPS4Y2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11940-1", "protein_name": "Polyadenylate-binding protein 1", "gene_name": "PABPC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07020-1", "protein_name": "Large ribosomal subunit protein eL18", "gene_name": "RPL18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35268-1", "protein_name": "Large ribosomal subunit protein eL22", "gene_name": "RPL22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83881-1", "protein_name": "Large ribosomal subunit protein eL42", "gene_name": "RPL36A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61353-1", "protein_name": "Large ribosomal subunit protein eL27", "gene_name": "RPL27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNX3-1", "protein_name": "Ribosomal protein uL24-like", "gene_name": "RPL26L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02543-1", "protein_name": "Large ribosomal subunit protein eL20", "gene_name": "RPL18A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40429-1", "protein_name": "Large ribosomal subunit protein uL13", "gene_name": "RPL13A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63173-1", "protein_name": "Large ribosomal subunit protein eL38", "gene_name": "RPL38", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62910-1", "protein_name": "Large ribosomal subunit protein eL32", "gene_name": "RPL32", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39023-1", "protein_name": "Large ribosomal subunit protein uL3", "gene_name": "RPL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18077-1", "protein_name": "Large ribosomal subunit protein eL33", "gene_name": "RPL35A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61254-1", "protein_name": "Large ribosomal subunit protein uL24", "gene_name": "RPL26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84098-1", "protein_name": "Large ribosomal subunit protein eL19", "gene_name": "RPL19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62888-1", "protein_name": "Large ribosomal subunit protein eL30", "gene_name": "RPL30", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83731-1", "protein_name": "Large ribosomal subunit protein eL24", "gene_name": "RPL24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62899-1", "protein_name": "Large ribosomal subunit protein eL31", "gene_name": "RPL31", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62945-1", "protein_name": "Small ribosomal subunit protein eS32", "gene_name": "RPL41", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61927-1", "protein_name": "Large ribosomal subunit protein eL37", "gene_name": "RPL37", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42766-1", "protein_name": "Large ribosomal subunit protein uL29", "gene_name": "RPL35", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05387-1", "protein_name": "Large ribosomal subunit protein P2", "gene_name": "RPLP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92901-1", "protein_name": "Ribosomal protein uL3-like", "gene_name": "RPL3L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46778-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "RPL21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05386-1", "protein_name": "Large ribosomal subunit protein P1", "gene_name": "RPLP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49207-1", "protein_name": "Large ribosomal subunit protein eL34", "gene_name": "RPL34", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62891-1", "protein_name": "Large ribosomal subunit protein eL39", "gene_name": "RPL39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96L21-1", "protein_name": "Ribosomal protein uL16-like", "gene_name": "RPL10L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26373-1", "protein_name": "Large ribosomal subunit protein eL13", "gene_name": "RPL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYD1-1", "protein_name": "Eukaryotic peptide chain release factor GTP-binding subunit ERF3B", "gene_name": "GSPT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60866-1", "protein_name": "Small ribosomal subunit protein uS10", "gene_name": "RPS20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969Q0-1", "protein_name": "Ribosomal protein eL42-like", "gene_name": "RPL36AL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61247-1", "protein_name": "Small ribosomal subunit protein eS1", "gene_name": "RPS3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62854-1", "protein_name": "Small ribosomal subunit protein eS26", "gene_name": "RPS26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62851-1", "protein_name": "Small ribosomal subunit protein eS25", "gene_name": "RPS25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08865-1", "protein_name": "Small ribosomal subunit protein uS2", "gene_name": "RPSA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62847-1", "protein_name": "Small ribosomal subunit protein eS24", "gene_name": "RPS24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62861-1", "protein_name": "Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein", "gene_name": "FAU", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62241-1", "protein_name": "Small ribosomal subunit protein eS8", "gene_name": "RPS8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62277-1", "protein_name": "Small ribosomal subunit protein uS15", "gene_name": "RPS13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39019-1", "protein_name": "Small ribosomal subunit protein eS19", "gene_name": "RPS19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62269-1", "protein_name": "Small ribosomal subunit protein uS13", "gene_name": "RPS18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02878-1", "protein_name": "Large ribosomal subunit protein eL6", "gene_name": "RPL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62273-1", "protein_name": "Small ribosomal subunit protein uS14", "gene_name": "RPS29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42677-1", "protein_name": "Small ribosomal subunit protein eS27", "gene_name": "RPS27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EH5-1", "protein_name": "Ribosomal protein eL39-like 2", "gene_name": "RPL39L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62263-1", "protein_name": "Small ribosomal subunit protein uS11", "gene_name": "RPS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61513-1", "protein_name": "Large ribosomal subunit protein eL43", "gene_name": "RPL37A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18124-1", "protein_name": "Large ribosomal subunit protein uL30", "gene_name": "RPL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15880-1", "protein_name": "Small ribosomal subunit protein uS5", "gene_name": "RPS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62750-1", "protein_name": "Large ribosomal subunit protein uL23", "gene_name": "RPL23A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62280-1", "protein_name": "Small ribosomal subunit protein uS17", "gene_name": "RPS11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62249-1", "protein_name": "Small ribosomal subunit protein uS9", "gene_name": "RPS16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50914-1", "protein_name": "Large ribosomal subunit protein eL14", "gene_name": "RPL14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62906-1", "protein_name": "Large ribosomal subunit protein uL1", "gene_name": "RPL10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23396-1", "protein_name": "Small ribosomal subunit protein uS3", "gene_name": "RPS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62841-1", "protein_name": "Small ribosomal subunit protein uS19", "gene_name": "RPS15", "tax_name": "Human" }, { "uniprot_canonical_ac": "C0HME6-1", "protein_name": "RPL36 alternative reading frame protein", "gene_name": "RPL36", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62829-1", "protein_name": "Large ribosomal subunit protein uL14", "gene_name": "RPL23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32969-1", "protein_name": "Large ribosomal subunit protein uL6", "gene_name": "RPL9P7; RPL9P8; RPL9P9; RPL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30050-1", "protein_name": "Large ribosomal subunit protein uL11", "gene_name": "RPL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q04637-1", "protein_name": "Eukaryotic translation initiation factor 4 gamma 1", "gene_name": "EIF4G1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62266-1", "protein_name": "Small ribosomal subunit protein uS12", "gene_name": "RPS23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46777-1", "protein_name": "Large ribosomal subunit protein uL18", "gene_name": "RPL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62753-1", "protein_name": "Small ribosomal subunit protein eS6", "gene_name": "RPS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27635-1", "protein_name": "Large ribosomal subunit protein uL16", "gene_name": "RPL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62913-1", "protein_name": "Large ribosomal subunit protein uL5", "gene_name": "RPL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36578-1", "protein_name": "Large ribosomal subunit protein uL4", "gene_name": "RPL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05388-1", "protein_name": "Large ribosomal subunit protein uL10", "gene_name": "RPLP0", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46779-1", "protein_name": "Large ribosomal subunit protein eL28", "gene_name": "RPL28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62857-1", "protein_name": "Small ribosomal subunit protein eS28", "gene_name": "RPS28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15170-1", "protein_name": "Eukaryotic peptide chain release factor GTP-binding subunit ERF3A", "gene_name": "GSPT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62495-1", "protein_name": "Eukaryotic peptide chain release factor subunit 1", "gene_name": "ETF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61313-1", "protein_name": "Large ribosomal subunit protein eL15", "gene_name": "RPL15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62081-1", "protein_name": "Small ribosomal subunit protein eS7", "gene_name": "RPS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71UM5-1", "protein_name": "Ribosomal protein eS27-like", "gene_name": "RPS27L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92900-1", "protein_name": "Regulator of nonsense transcripts 1", "gene_name": "UPF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P18621", "url": "https://www.uniprot.org/uniprotkb/P18621" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.16622410", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 96 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Hijacking of the host-cell response and translational control during influenza virus infection.", "journal": "Virus research", "date": "2006", "authors": "Kash JC, Goodman AG, Korth MJ, Katze MG", "reference": { "type": "PubMed", "id": "16630668", "url": "https://pubmed.ncbi.nlm.nih.gov/16630668" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P18621-1", "protein_name": "Large ribosomal subunit protein uL22", "gene_name": "RPL17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46776-1", "protein_name": "Large ribosomal subunit protein uL15", "gene_name": "RPL27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46782-1", "protein_name": "Small ribosomal subunit protein uS7", "gene_name": "RPS5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47914-1", "protein_name": "Large ribosomal subunit protein eL29", "gene_name": "RPL29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62244-1", "protein_name": "Small ribosomal subunit protein uS8", "gene_name": "RPS15A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22090-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 1", "gene_name": "RPS4Y1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P5R6-1", "protein_name": "Ribosomal protein eL22-like", "gene_name": "RPL22L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08708-1", "protein_name": "Small ribosomal subunit protein eS17", "gene_name": "RPS17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46783-1", "protein_name": "Small ribosomal subunit protein eS10", "gene_name": "RPS10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62917-1", "protein_name": "Large ribosomal subunit protein uL2", "gene_name": "RPL8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25398-1", "protein_name": "Small ribosomal subunit protein eS12", "gene_name": "RPS12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46781-1", "protein_name": "Small ribosomal subunit protein uS4", "gene_name": "RPS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62424-1", "protein_name": "Large ribosomal subunit protein eL8", "gene_name": "RPL7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62701-1", "protein_name": "Small ribosomal subunit protein eS4, X isoform", "gene_name": "RPS4X", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63220-1", "protein_name": "Small ribosomal subunit protein eS21", "gene_name": "RPS21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TD47-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 2", "gene_name": "RPS4Y2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07020-1", "protein_name": "Large ribosomal subunit protein eL18", "gene_name": "RPL18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35268-1", "protein_name": "Large ribosomal subunit protein eL22", "gene_name": "RPL22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83881-1", "protein_name": "Large ribosomal subunit protein eL42", "gene_name": "RPL36A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61353-1", "protein_name": "Large ribosomal subunit protein eL27", "gene_name": "RPL27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNX3-1", "protein_name": "Ribosomal protein uL24-like", "gene_name": "RPL26L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02543-1", "protein_name": "Large ribosomal subunit protein eL20", "gene_name": "RPL18A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40429-1", "protein_name": "Large ribosomal subunit protein uL13", "gene_name": "RPL13A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63173-1", "protein_name": "Large ribosomal subunit protein eL38", "gene_name": "RPL38", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62910-1", "protein_name": "Large ribosomal subunit protein eL32", "gene_name": "RPL32", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39023-1", "protein_name": "Large ribosomal subunit protein uL3", "gene_name": "RPL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18077-1", "protein_name": "Large ribosomal subunit protein eL33", "gene_name": "RPL35A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61254-1", "protein_name": "Large ribosomal subunit protein uL24", "gene_name": "RPL26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84098-1", "protein_name": "Large ribosomal subunit protein eL19", "gene_name": "RPL19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62888-1", "protein_name": "Large ribosomal subunit protein eL30", "gene_name": "RPL30", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83731-1", "protein_name": "Large ribosomal subunit protein eL24", "gene_name": "RPL24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62899-1", "protein_name": "Large ribosomal subunit protein eL31", "gene_name": "RPL31", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62945-1", "protein_name": "Small ribosomal subunit protein eS32", "gene_name": "RPL41", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61927-1", "protein_name": "Large ribosomal subunit protein eL37", "gene_name": "RPL37", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42766-1", "protein_name": "Large ribosomal subunit protein uL29", "gene_name": "RPL35", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05387-1", "protein_name": "Large ribosomal subunit protein P2", "gene_name": "RPLP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92901-1", "protein_name": "Ribosomal protein uL3-like", "gene_name": "RPL3L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46778-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "RPL21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05386-1", "protein_name": "Large ribosomal subunit protein P1", "gene_name": "RPLP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49207-1", "protein_name": "Large ribosomal subunit protein eL34", "gene_name": "RPL34", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62891-1", "protein_name": "Large ribosomal subunit protein eL39", "gene_name": "RPL39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96L21-1", "protein_name": "Ribosomal protein uL16-like", "gene_name": "RPL10L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26373-1", "protein_name": "Large ribosomal subunit protein eL13", "gene_name": "RPL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60866-1", "protein_name": "Small ribosomal subunit protein uS10", "gene_name": "RPS20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969Q0-1", "protein_name": "Ribosomal protein eL42-like", "gene_name": "RPL36AL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61247-1", "protein_name": "Small ribosomal subunit protein eS1", "gene_name": "RPS3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62854-1", "protein_name": "Small ribosomal subunit protein eS26", "gene_name": "RPS26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62851-1", "protein_name": "Small ribosomal subunit protein eS25", "gene_name": "RPS25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08865-1", "protein_name": "Small ribosomal subunit protein uS2", "gene_name": "RPSA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62847-1", "protein_name": "Small ribosomal subunit protein eS24", "gene_name": "RPS24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62861-1", "protein_name": "Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein", "gene_name": "FAU", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62241-1", "protein_name": "Small ribosomal subunit protein eS8", "gene_name": "RPS8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62277-1", "protein_name": "Small ribosomal subunit protein uS15", "gene_name": "RPS13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39019-1", "protein_name": "Small ribosomal subunit protein eS19", "gene_name": "RPS19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62269-1", "protein_name": "Small ribosomal subunit protein uS13", "gene_name": "RPS18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02878-1", "protein_name": "Large ribosomal subunit protein eL6", "gene_name": "RPL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62273-1", "protein_name": "Small ribosomal subunit protein uS14", "gene_name": "RPS29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42677-1", "protein_name": "Small ribosomal subunit protein eS27", "gene_name": "RPS27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EH5-1", "protein_name": "Ribosomal protein eL39-like 2", "gene_name": "RPL39L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62263-1", "protein_name": "Small ribosomal subunit protein uS11", "gene_name": "RPS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61513-1", "protein_name": "Large ribosomal subunit protein eL43", "gene_name": "RPL37A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18124-1", "protein_name": "Large ribosomal subunit protein uL30", "gene_name": "RPL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12849-1", "protein_name": "G-rich sequence factor 1", "gene_name": "GRSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15880-1", "protein_name": "Small ribosomal subunit protein uS5", "gene_name": "RPS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62750-1", "protein_name": "Large ribosomal subunit protein uL23", "gene_name": "RPL23A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62280-1", "protein_name": "Small ribosomal subunit protein uS17", "gene_name": "RPS11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62249-1", "protein_name": "Small ribosomal subunit protein uS9", "gene_name": "RPS16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50914-1", "protein_name": "Large ribosomal subunit protein eL14", "gene_name": "RPL14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62906-1", "protein_name": "Large ribosomal subunit protein uL1", "gene_name": "RPL10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23396-1", "protein_name": "Small ribosomal subunit protein uS3", "gene_name": "RPS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62841-1", "protein_name": "Small ribosomal subunit protein uS19", "gene_name": "RPS15", "tax_name": "Human" }, { "uniprot_canonical_ac": "C0HME6-1", "protein_name": "RPL36 alternative reading frame protein", "gene_name": "RPL36", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62829-1", "protein_name": "Large ribosomal subunit protein uL14", "gene_name": "RPL23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32969-1", "protein_name": "Large ribosomal subunit protein uL6", "gene_name": "RPL9P7; RPL9P8; RPL9P9; RPL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30050-1", "protein_name": "Large ribosomal subunit protein uL11", "gene_name": "RPL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62266-1", "protein_name": "Small ribosomal subunit protein uS12", "gene_name": "RPS23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46777-1", "protein_name": "Large ribosomal subunit protein uL18", "gene_name": "RPL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62753-1", "protein_name": "Small ribosomal subunit protein eS6", "gene_name": "RPS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27635-1", "protein_name": "Large ribosomal subunit protein uL16", "gene_name": "RPL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62913-1", "protein_name": "Large ribosomal subunit protein uL5", "gene_name": "RPL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36578-1", "protein_name": "Large ribosomal subunit protein uL4", "gene_name": "RPL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05388-1", "protein_name": "Large ribosomal subunit protein uL10", "gene_name": "RPLP0", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46779-1", "protein_name": "Large ribosomal subunit protein eL28", "gene_name": "RPL28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62857-1", "protein_name": "Small ribosomal subunit protein eS28", "gene_name": "RPS28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13217-1", "protein_name": "DnaJ homolog subfamily C member 3", "gene_name": "DNAJC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61313-1", "protein_name": "Large ribosomal subunit protein eL15", "gene_name": "RPL15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62081-1", "protein_name": "Small ribosomal subunit protein eS7", "gene_name": "RPS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71UM5-1", "protein_name": "Ribosomal protein eS27-like", "gene_name": "RPS27L", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P18621", "url": "https://www.uniprot.org/uniprotkb/P18621" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.16630668", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 90 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Structures of the PIN domains of SMG6 and SMG5 reveal a nuclease within the mRNA surveillance complex.", "journal": "The EMBO journal", "date": "2006", "authors": "Glavan F, Behm-Ansmant I, Izaurralde E, Conti E", "reference": { "type": "PubMed", "id": "17053788", "url": "https://pubmed.ncbi.nlm.nih.gov/17053788" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P18621-1", "protein_name": "Large ribosomal subunit protein uL22", "gene_name": "RPL17", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H1J1-1", "protein_name": "Regulator of nonsense transcripts 3A", "gene_name": "UPF3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46776-1", "protein_name": "Large ribosomal subunit protein uL15", "gene_name": "RPL27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46782-1", "protein_name": "Small ribosomal subunit protein uS7", "gene_name": "RPS5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47914-1", "protein_name": "Large ribosomal subunit protein eL29", "gene_name": "RPL29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62244-1", "protein_name": "Small ribosomal subunit protein uS8", "gene_name": "RPS15A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22090-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 1", "gene_name": "RPS4Y1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P5R6-1", "protein_name": "Ribosomal protein eL22-like", "gene_name": "RPL22L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08708-1", "protein_name": "Small ribosomal subunit protein eS17", "gene_name": "RPS17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46783-1", "protein_name": "Small ribosomal subunit protein eS10", "gene_name": "RPS10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62917-1", "protein_name": "Large ribosomal subunit protein uL2", "gene_name": "RPL8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25398-1", "protein_name": "Small ribosomal subunit protein eS12", "gene_name": "RPS12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46781-1", "protein_name": "Small ribosomal subunit protein uS4", "gene_name": "RPS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62424-1", "protein_name": "Large ribosomal subunit protein eL8", "gene_name": "RPL7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62701-1", "protein_name": "Small ribosomal subunit protein eS4, X isoform", "gene_name": "RPS4X", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63220-1", "protein_name": "Small ribosomal subunit protein eS21", "gene_name": "RPS21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TD47-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 2", "gene_name": "RPS4Y2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11940-1", "protein_name": "Polyadenylate-binding protein 1", "gene_name": "PABPC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07020-1", "protein_name": "Large ribosomal subunit protein eL18", "gene_name": "RPL18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35268-1", "protein_name": "Large ribosomal subunit protein eL22", "gene_name": "RPL22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83881-1", "protein_name": "Large ribosomal subunit protein eL42", "gene_name": "RPL36A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61353-1", "protein_name": "Large ribosomal subunit protein eL27", "gene_name": "RPL27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNX3-1", "protein_name": "Ribosomal protein uL24-like", "gene_name": "RPL26L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02543-1", "protein_name": "Large ribosomal subunit protein eL20", "gene_name": "RPL18A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40429-1", "protein_name": "Large ribosomal subunit protein uL13", "gene_name": "RPL13A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63173-1", "protein_name": "Large ribosomal subunit protein eL38", "gene_name": "RPL38", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62910-1", "protein_name": "Large ribosomal subunit protein eL32", "gene_name": "RPL32", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39023-1", "protein_name": "Large ribosomal subunit protein uL3", "gene_name": "RPL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18077-1", "protein_name": "Large ribosomal subunit protein eL33", "gene_name": "RPL35A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61254-1", "protein_name": "Large ribosomal subunit protein uL24", "gene_name": "RPL26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84098-1", "protein_name": "Large ribosomal subunit protein eL19", "gene_name": "RPL19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62888-1", "protein_name": "Large ribosomal subunit protein eL30", "gene_name": "RPL30", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83731-1", "protein_name": "Large ribosomal subunit protein eL24", "gene_name": "RPL24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62899-1", "protein_name": "Large ribosomal subunit protein eL31", "gene_name": "RPL31", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62945-1", "protein_name": "Small ribosomal subunit protein eS32", "gene_name": "RPL41", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61927-1", "protein_name": "Large ribosomal subunit protein eL37", "gene_name": "RPL37", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42766-1", "protein_name": "Large ribosomal subunit protein uL29", "gene_name": "RPL35", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05387-1", "protein_name": "Large ribosomal subunit protein P2", "gene_name": "RPLP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92901-1", "protein_name": "Ribosomal protein uL3-like", "gene_name": "RPL3L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46778-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "RPL21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05386-1", "protein_name": "Large ribosomal subunit protein P1", "gene_name": "RPLP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49207-1", "protein_name": "Large ribosomal subunit protein eL34", "gene_name": "RPL34", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62891-1", "protein_name": "Large ribosomal subunit protein eL39", "gene_name": "RPL39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96L21-1", "protein_name": "Ribosomal protein uL16-like", "gene_name": "RPL10L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26373-1", "protein_name": "Large ribosomal subunit protein eL13", "gene_name": "RPL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86US8-1", "protein_name": "Telomerase-binding protein EST1A", "gene_name": "SMG6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYD1-1", "protein_name": "Eukaryotic peptide chain release factor GTP-binding subunit ERF3B", "gene_name": "GSPT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60866-1", "protein_name": "Small ribosomal subunit protein uS10", "gene_name": "RPS20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969Q0-1", "protein_name": "Ribosomal protein eL42-like", "gene_name": "RPL36AL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61247-1", "protein_name": "Small ribosomal subunit protein eS1", "gene_name": "RPS3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62854-1", "protein_name": "Small ribosomal subunit protein eS26", "gene_name": "RPS26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62851-1", "protein_name": "Small ribosomal subunit protein eS25", "gene_name": "RPS25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08865-1", "protein_name": "Small ribosomal subunit protein uS2", "gene_name": "RPSA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62847-1", "protein_name": "Small ribosomal subunit protein eS24", "gene_name": "RPS24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62861-1", "protein_name": "Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein", "gene_name": "FAU", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62241-1", "protein_name": "Small ribosomal subunit protein eS8", "gene_name": "RPS8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62277-1", "protein_name": "Small ribosomal subunit protein uS15", "gene_name": "RPS13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39019-1", "protein_name": "Small ribosomal subunit protein eS19", "gene_name": "RPS19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92540-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG7", "gene_name": "SMG7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPR3-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG5", "gene_name": "SMG5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62269-1", "protein_name": "Small ribosomal subunit protein uS13", "gene_name": "RPS18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02878-1", "protein_name": "Large ribosomal subunit protein eL6", "gene_name": "RPL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62273-1", "protein_name": "Small ribosomal subunit protein uS14", "gene_name": "RPS29", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8ND04-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG8", "gene_name": "SMG8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPI6-1", "protein_name": "mRNA-decapping enzyme 1A", "gene_name": "DCP1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42677-1", "protein_name": "Small ribosomal subunit protein eS27", "gene_name": "RPS27", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38919-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "EIF4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61326-1", "protein_name": "Protein mago nashi homolog", "gene_name": "MAGOH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EH5-1", "protein_name": "Ribosomal protein eL39-like 2", "gene_name": "RPL39L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15287-1", "protein_name": "RNA-binding protein with serine-rich domain 1", "gene_name": "RNPS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0W8-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG9", "gene_name": "SMG9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62263-1", "protein_name": "Small ribosomal subunit protein uS11", "gene_name": "RPS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61513-1", "protein_name": "Large ribosomal subunit protein eL43", "gene_name": "RPL37A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18124-1", "protein_name": "Large ribosomal subunit protein uL30", "gene_name": "RPL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZI7-1", "protein_name": "Regulator of nonsense transcripts 3B", "gene_name": "UPF3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15880-1", "protein_name": "Small ribosomal subunit protein uS5", "gene_name": "RPS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62750-1", "protein_name": "Large ribosomal subunit protein uL23", "gene_name": "RPL23A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62280-1", "protein_name": "Small ribosomal subunit protein uS17", "gene_name": "RPS11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62249-1", "protein_name": "Small ribosomal subunit protein uS9", "gene_name": "RPS16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50914-1", "protein_name": "Large ribosomal subunit protein eL14", "gene_name": "RPL14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62906-1", "protein_name": "Large ribosomal subunit protein uL1", "gene_name": "RPL10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23396-1", "protein_name": "Small ribosomal subunit protein uS3", "gene_name": "RPS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63151-1", "protein_name": "Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform", "gene_name": "PPP2R2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A72-1", "protein_name": "Protein mago nashi homolog 2", "gene_name": "MAGOHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62841-1", "protein_name": "Small ribosomal subunit protein uS19", "gene_name": "RPS15", "tax_name": "Human" }, { "uniprot_canonical_ac": "C0HME6-1", "protein_name": "RPL36 alternative reading frame protein", "gene_name": "RPL36", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62829-1", "protein_name": "Large ribosomal subunit protein uL14", "gene_name": "RPL23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32969-1", "protein_name": "Large ribosomal subunit protein uL6", "gene_name": "RPL9P7; RPL9P8; RPL9P9; RPL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30050-1", "protein_name": "Large ribosomal subunit protein uL11", "gene_name": "RPL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q04637-1", "protein_name": "Eukaryotic translation initiation factor 4 gamma 1", "gene_name": "EIF4G1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62266-1", "protein_name": "Small ribosomal subunit protein uS12", "gene_name": "RPS23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46777-1", "protein_name": "Large ribosomal subunit protein uL18", "gene_name": "RPL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96Q15-1", "protein_name": "Serine/threonine-protein kinase SMG1", "gene_name": "SMG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62753-1", "protein_name": "Small ribosomal subunit protein eS6", "gene_name": "RPS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27635-1", "protein_name": "Large ribosomal subunit protein uL16", "gene_name": "RPL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62913-1", "protein_name": "Large ribosomal subunit protein uL5", "gene_name": "RPL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36578-1", "protein_name": "Large ribosomal subunit protein uL4", "gene_name": "RPL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HAU5-1", "protein_name": "Regulator of nonsense transcripts 2", "gene_name": "UPF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5S9-1", "protein_name": "RNA-binding protein 8A", "gene_name": "RBM8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15234-1", "protein_name": "Protein CASC3", "gene_name": "CASC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05388-1", "protein_name": "Large ribosomal subunit protein uL10", "gene_name": "RPLP0", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46779-1", "protein_name": "Large ribosomal subunit protein eL28", "gene_name": "RPL28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62857-1", "protein_name": "Small ribosomal subunit protein eS28", "gene_name": "RPS28", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPJ4-1", "protein_name": "Proline-rich nuclear receptor coactivator 2", "gene_name": "PNRC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15170-1", "protein_name": "Eukaryotic peptide chain release factor GTP-binding subunit ERF3A", "gene_name": "GSPT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62495-1", "protein_name": "Eukaryotic peptide chain release factor subunit 1", "gene_name": "ETF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61313-1", "protein_name": "Large ribosomal subunit protein eL15", "gene_name": "RPL15", "tax_name": "Human" }, { 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"database": "UniProtKB", "id": "P18621", "url": "https://www.uniprot.org/uniprotkb/P18621" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 284, "end_pos": 284, "sequence_org": "K", "sequence_mut": "A", "comment": "Loss of activity.", "evidence": [ { "database": "UniProtKB", "id": "Q9HD40", "url": "https://www.uniprot.org/uniprotkb/Q9HD40" }, { "database": "PubMed", "id": "17142313", "url": "https://pubmed.ncbi.nlm.nih.gov/17142313" } ], "uniprot_canonical_ac": "Q9HD40-1" } ], "record_id": "pubmed.17142313", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 94 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { 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"table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "ATF2 is required for amino acid-regulated transcription by orchestrating specific histone acetylation.", "journal": "Nucleic acids research", "date": "2007", "authors": "Bruhat A, Cherasse Y, Maurin AC, Breitwieser W, Parry L, Deval C, Jones N, Jousse C, Fafournoux P", "reference": { "type": "PubMed", "id": "17267404", "url": "https://pubmed.ncbi.nlm.nih.gov/17267404" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P18621-1", "protein_name": "Large ribosomal subunit protein uL22", "gene_name": "RPL17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46776-1", "protein_name": "Large ribosomal subunit protein 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"tax_name": "Human" }, { "uniprot_canonical_ac": "Q07020-1", "protein_name": "Large ribosomal subunit protein eL18", "gene_name": "RPL18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35268-1", "protein_name": "Large ribosomal subunit protein eL22", "gene_name": "RPL22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83881-1", "protein_name": "Large ribosomal subunit protein eL42", "gene_name": "RPL36A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61353-1", "protein_name": "Large ribosomal subunit protein eL27", "gene_name": "RPL27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNX3-1", "protein_name": "Ribosomal protein uL24-like", "gene_name": "RPL26L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02543-1", "protein_name": "Large ribosomal subunit protein eL20", "gene_name": "RPL18A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40429-1", "protein_name": "Large ribosomal subunit protein uL13", "gene_name": "RPL13A", "tax_name": "Human" }, { 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"P83731-1", "protein_name": "Large ribosomal subunit protein eL24", "gene_name": "RPL24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62899-1", "protein_name": "Large ribosomal subunit protein eL31", "gene_name": "RPL31", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62945-1", "protein_name": "Small ribosomal subunit protein eS32", "gene_name": "RPL41", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61927-1", "protein_name": "Large ribosomal subunit protein eL37", "gene_name": "RPL37", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42766-1", "protein_name": "Large ribosomal subunit protein uL29", "gene_name": "RPL35", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05387-1", "protein_name": "Large ribosomal subunit protein P2", "gene_name": "RPLP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92901-1", "protein_name": "Ribosomal protein uL3-like", "gene_name": "RPL3L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46778-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "RPL21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05386-1", "protein_name": "Large ribosomal subunit protein P1", "gene_name": "RPLP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49207-1", "protein_name": "Large ribosomal subunit protein eL34", "gene_name": "RPL34", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62891-1", "protein_name": "Large ribosomal subunit protein eL39", "gene_name": "RPL39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96L21-1", "protein_name": "Ribosomal protein uL16-like", "gene_name": "RPL10L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26373-1", "protein_name": "Large ribosomal subunit protein eL13", "gene_name": "RPL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60866-1", "protein_name": "Small ribosomal subunit protein uS10", "gene_name": "RPS20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969Q0-1", "protein_name": "Ribosomal protein eL42-like", "gene_name": 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}, { "uniprot_canonical_ac": "P62241-1", "protein_name": "Small ribosomal subunit protein eS8", "gene_name": "RPS8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUX1-1", "protein_name": "Glutathione-specific gamma-glutamylcyclotransferase 1", "gene_name": "CHAC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62277-1", "protein_name": "Small ribosomal subunit protein uS15", "gene_name": "RPS13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39019-1", "protein_name": "Small ribosomal subunit protein eS19", "gene_name": "RPS19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62269-1", "protein_name": "Small ribosomal subunit protein uS13", "gene_name": "RPS18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02878-1", "protein_name": "Large ribosomal subunit protein eL6", "gene_name": "RPL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62273-1", "protein_name": "Small ribosomal subunit protein uS14", "gene_name": "RPS29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17676-1", "protein_name": "CCAAT/enhancer-binding protein beta", "gene_name": "CEBPB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20042-1", "protein_name": "Eukaryotic translation initiation factor 2 subunit 2", "gene_name": "EIF2S2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2D1-1", "protein_name": "Cyclic AMP-dependent transcription factor ATF-5", "gene_name": "ATF5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42677-1", "protein_name": "Small ribosomal subunit protein eS27", "gene_name": "RPS27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EH5-1", "protein_name": "Ribosomal protein eL39-like 2", "gene_name": "RPL39L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62263-1", "protein_name": "Small ribosomal subunit protein uS11", "gene_name": "RPS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61513-1", "protein_name": "Large ribosomal subunit protein eL43", "gene_name": "RPL37A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18124-1", "protein_name": "Large ribosomal subunit protein uL30", "gene_name": "RPL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75807-1", "protein_name": "Protein phosphatase 1 regulatory subunit 15A", "gene_name": "PPP1R15A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15880-1", "protein_name": "Small ribosomal subunit protein uS5", "gene_name": "RPS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62750-1", "protein_name": "Large ribosomal subunit protein uL23", "gene_name": "RPL23A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62280-1", "protein_name": "Small ribosomal subunit protein uS17", "gene_name": "RPS11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62249-1", "protein_name": "Small ribosomal subunit protein uS9", "gene_name": "RPS16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50914-1", "protein_name": "Large ribosomal subunit protein eL14", "gene_name": "RPL14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62906-1", "protein_name": "Large ribosomal subunit protein uL1", "gene_name": "RPL10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23396-1", "protein_name": "Small ribosomal subunit protein uS3", "gene_name": "RPS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05198-1", "protein_name": "Eukaryotic translation initiation factor 2 subunit 1", "gene_name": "EIF2S1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62841-1", "protein_name": "Small ribosomal subunit protein uS19", "gene_name": "RPS15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92616-1", "protein_name": "Stalled ribosome sensor GCN1", "gene_name": "GCN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "C0HME6-1", "protein_name": "RPL36 alternative reading frame protein", "gene_name": "RPL36", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62829-1", "protein_name": "Large ribosomal subunit protein uL14", "gene_name": "RPL23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32969-1", "protein_name": "Large ribosomal subunit protein uL6", "gene_name": "RPL9P7; RPL9P8; RPL9P9; RPL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30050-1", "protein_name": "Large ribosomal subunit protein uL11", "gene_name": "RPL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62266-1", "protein_name": "Small ribosomal subunit protein uS12", "gene_name": "RPS23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46777-1", "protein_name": "Large ribosomal subunit protein uL18", "gene_name": "RPL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P2K8-1", "protein_name": "eIF-2-alpha kinase GCN2", "gene_name": "EIF2AK4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BQI3-1", "protein_name": "Eukaryotic translation initiation factor 2-alpha kinase 1", "gene_name": "EIF2AK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41091-1", "protein_name": "Eukaryotic translation initiation factor 2 subunit 3", "gene_name": "EIF2S3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62753-1", "protein_name": "Small ribosomal subunit protein eS6", "gene_name": "RPS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27635-1", "protein_name": "Large ribosomal subunit protein uL16", "gene_name": "RPL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62913-1", "protein_name": "Large ribosomal subunit protein uL5", "gene_name": "RPL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36578-1", "protein_name": "Large ribosomal subunit protein uL4", "gene_name": "RPL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05388-1", "protein_name": "Large ribosomal subunit protein uL10", "gene_name": "RPLP0", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46779-1", "protein_name": "Large ribosomal subunit protein eL28", "gene_name": "RPL28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62857-1", "protein_name": "Small ribosomal subunit protein eS28", "gene_name": "RPS28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61313-1", "protein_name": "Large ribosomal subunit protein eL15", "gene_name": "RPL15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62081-1", "protein_name": "Small ribosomal subunit protein eS7", "gene_name": "RPS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71UM5-1", "protein_name": "Ribosomal protein eS27-like", "gene_name": "RPS27L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13322-1", "protein_name": "Growth factor receptor-bound protein 10", "gene_name": "GRB10", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P18621", "url": "https://www.uniprot.org/uniprotkb/P18621" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.17267404", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 107 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The nonsense-mediated decay RNA surveillance pathway.", "journal": "Annual review of biochemistry", "date": "2007", "authors": "Chang YF, Imam JS, Wilkinson MF", "reference": { "type": "PubMed", "id": "17352659", "url": "https://pubmed.ncbi.nlm.nih.gov/17352659" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P18621-1", "protein_name": "Large ribosomal subunit protein uL22", "gene_name": "RPL17", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H1J1-1", "protein_name": "Regulator of nonsense transcripts 3A", "gene_name": "UPF3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46776-1", "protein_name": "Large ribosomal subunit protein uL15", "gene_name": "RPL27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46782-1", "protein_name": "Small ribosomal subunit protein uS7", "gene_name": "RPS5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47914-1", "protein_name": "Large ribosomal subunit protein eL29", "gene_name": "RPL29", "tax_name": "Human" }, { "uniprot_canonical_ac": 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"protein_name": "Large ribosomal subunit protein eL22", "gene_name": "RPL22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83881-1", "protein_name": "Large ribosomal subunit protein eL42", "gene_name": "RPL36A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61353-1", "protein_name": "Large ribosomal subunit protein eL27", "gene_name": "RPL27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNX3-1", "protein_name": "Ribosomal protein uL24-like", "gene_name": "RPL26L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02543-1", "protein_name": "Large ribosomal subunit protein eL20", "gene_name": "RPL18A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40429-1", "protein_name": "Large ribosomal subunit protein uL13", "gene_name": "RPL13A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63173-1", "protein_name": "Large ribosomal subunit protein eL38", "gene_name": "RPL38", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62910-1", "protein_name": "Large ribosomal subunit protein eL32", "gene_name": "RPL32", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39023-1", "protein_name": "Large ribosomal subunit protein uL3", "gene_name": "RPL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18077-1", "protein_name": "Large ribosomal subunit protein eL33", "gene_name": "RPL35A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61254-1", "protein_name": "Large ribosomal subunit protein uL24", "gene_name": "RPL26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84098-1", "protein_name": "Large ribosomal subunit protein eL19", "gene_name": "RPL19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62888-1", "protein_name": "Large ribosomal subunit protein eL30", "gene_name": "RPL30", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83731-1", "protein_name": "Large ribosomal subunit protein eL24", "gene_name": "RPL24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62899-1", "protein_name": "Large ribosomal subunit protein 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"Human" }, { "uniprot_canonical_ac": "P49207-1", "protein_name": "Large ribosomal subunit protein eL34", "gene_name": "RPL34", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62891-1", "protein_name": "Large ribosomal subunit protein eL39", "gene_name": "RPL39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96L21-1", "protein_name": "Ribosomal protein uL16-like", "gene_name": "RPL10L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26373-1", "protein_name": "Large ribosomal subunit protein eL13", "gene_name": "RPL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86US8-1", "protein_name": "Telomerase-binding protein EST1A", "gene_name": "SMG6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYD1-1", "protein_name": "Eukaryotic peptide chain release factor GTP-binding subunit ERF3B", "gene_name": "GSPT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60866-1", "protein_name": "Small ribosomal subunit protein uS10", "gene_name": "RPS20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969Q0-1", "protein_name": "Ribosomal protein eL42-like", "gene_name": "RPL36AL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61247-1", "protein_name": "Small ribosomal subunit protein eS1", "gene_name": "RPS3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62854-1", "protein_name": "Small ribosomal subunit protein eS26", "gene_name": "RPS26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62851-1", "protein_name": "Small ribosomal subunit protein eS25", "gene_name": "RPS25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08865-1", "protein_name": "Small ribosomal subunit protein uS2", "gene_name": "RPSA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62847-1", "protein_name": "Small ribosomal subunit protein eS24", "gene_name": "RPS24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62861-1", "protein_name": "Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein", "gene_name": "FAU", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62241-1", "protein_name": "Small ribosomal subunit protein eS8", "gene_name": "RPS8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62277-1", "protein_name": "Small ribosomal subunit protein uS15", "gene_name": "RPS13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39019-1", "protein_name": "Small ribosomal subunit protein eS19", "gene_name": "RPS19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92540-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG7", "gene_name": "SMG7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPR3-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG5", "gene_name": "SMG5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62269-1", "protein_name": "Small ribosomal subunit protein uS13", "gene_name": "RPS18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02878-1", "protein_name": "Large ribosomal subunit protein eL6", "gene_name": "RPL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62273-1", "protein_name": "Small ribosomal subunit protein uS14", "gene_name": "RPS29", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8ND04-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG8", "gene_name": "SMG8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPI6-1", "protein_name": "mRNA-decapping enzyme 1A", "gene_name": "DCP1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42677-1", "protein_name": "Small ribosomal subunit protein eS27", "gene_name": "RPS27", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38919-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "EIF4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61326-1", "protein_name": "Protein mago nashi homolog", "gene_name": "MAGOH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EH5-1", "protein_name": "Ribosomal protein eL39-like 2", "gene_name": "RPL39L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15287-1", "protein_name": "RNA-binding protein with serine-rich domain 1", "gene_name": "RNPS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0W8-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG9", "gene_name": "SMG9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62263-1", "protein_name": "Small ribosomal subunit protein uS11", "gene_name": "RPS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61513-1", "protein_name": "Large ribosomal subunit protein eL43", "gene_name": "RPL37A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18124-1", "protein_name": "Large ribosomal subunit protein uL30", "gene_name": "RPL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZI7-1", "protein_name": "Regulator of nonsense transcripts 3B", "gene_name": "UPF3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15880-1", "protein_name": "Small ribosomal subunit protein uS5", "gene_name": "RPS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62750-1", "protein_name": "Large ribosomal subunit protein uL23", "gene_name": "RPL23A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62280-1", "protein_name": "Small ribosomal subunit protein uS17", "gene_name": "RPS11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62249-1", "protein_name": "Small ribosomal subunit protein uS9", "gene_name": "RPS16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50914-1", "protein_name": "Large ribosomal subunit protein eL14", "gene_name": "RPL14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62906-1", "protein_name": "Large ribosomal subunit protein uL1", "gene_name": "RPL10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23396-1", "protein_name": "Small ribosomal subunit protein uS3", "gene_name": "RPS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63151-1", "protein_name": "Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform", "gene_name": "PPP2R2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A72-1", "protein_name": "Protein mago nashi homolog 2", "gene_name": "MAGOHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62841-1", "protein_name": "Small ribosomal subunit protein uS19", "gene_name": "RPS15", "tax_name": "Human" }, { "uniprot_canonical_ac": "C0HME6-1", "protein_name": "RPL36 alternative reading frame protein", "gene_name": "RPL36", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62829-1", "protein_name": "Large ribosomal subunit protein uL14", "gene_name": "RPL23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32969-1", "protein_name": "Large ribosomal subunit protein uL6", "gene_name": "RPL9P7; RPL9P8; RPL9P9; RPL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30050-1", "protein_name": "Large ribosomal subunit protein uL11", "gene_name": "RPL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q04637-1", "protein_name": "Eukaryotic translation initiation factor 4 gamma 1", "gene_name": "EIF4G1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62266-1", "protein_name": "Small ribosomal subunit protein uS12", "gene_name": "RPS23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46777-1", "protein_name": "Large ribosomal subunit protein uL18", "gene_name": "RPL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96Q15-1", "protein_name": "Serine/threonine-protein kinase SMG1", "gene_name": "SMG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62753-1", "protein_name": "Small ribosomal subunit protein eS6", "gene_name": "RPS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27635-1", "protein_name": "Large ribosomal subunit protein uL16", "gene_name": "RPL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62913-1", "protein_name": "Large ribosomal subunit protein uL5", "gene_name": "RPL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36578-1", "protein_name": "Large ribosomal subunit protein uL4", "gene_name": "RPL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HAU5-1", "protein_name": "Regulator of nonsense transcripts 2", "gene_name": "UPF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5S9-1", "protein_name": "RNA-binding protein 8A", "gene_name": "RBM8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15234-1", "protein_name": "Protein CASC3", "gene_name": "CASC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05388-1", "protein_name": "Large ribosomal subunit protein uL10", "gene_name": "RPLP0", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46779-1", "protein_name": "Large ribosomal subunit protein eL28", "gene_name": "RPL28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62857-1", "protein_name": "Small ribosomal subunit protein eS28", "gene_name": "RPS28", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPJ4-1", "protein_name": "Proline-rich nuclear receptor coactivator 2", "gene_name": "PNRC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15170-1", "protein_name": "Eukaryotic peptide chain release factor GTP-binding subunit ERF3A", "gene_name": "GSPT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62495-1", "protein_name": "Eukaryotic peptide chain release factor subunit 1", "gene_name": "ETF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61313-1", "protein_name": "Large ribosomal subunit protein eL15", "gene_name": "RPL15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62081-1", "protein_name": "Small ribosomal subunit protein eS7", "gene_name": "RPS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71UM5-1", "protein_name": "Ribosomal protein eS27-like", "gene_name": "RPS27L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30153-1", "protein_name": "Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform", "gene_name": "PPP2R1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67775-1", "protein_name": "Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform", "gene_name": "PPP2CA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92900-1", "protein_name": "Regulator of nonsense transcripts 1", "gene_name": "UPF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P18621", "url": "https://www.uniprot.org/uniprotkb/P18621" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.17352659", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 116 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": 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"field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "An alternative branch of the nonsense-mediated decay pathway.", "journal": "The EMBO journal", "date": "2007", "authors": "Chan WK, Huang L, Gudikote JP, Chang YF, Imam JS, MacLean JA 2nd, Wilkinson MF", "reference": { "type": "PubMed", "id": "17363904", "url": "https://pubmed.ncbi.nlm.nih.gov/17363904" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P18621-1", "protein_name": "Large ribosomal subunit protein uL22", "gene_name": "RPL17", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H1J1-1", "protein_name": "Regulator of nonsense transcripts 3A", "gene_name": "UPF3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46776-1", "protein_name": "Large ribosomal subunit protein uL15", "gene_name": "RPL27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46782-1", "protein_name": "Small ribosomal subunit protein uS7", "gene_name": "RPS5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47914-1", "protein_name": "Large ribosomal subunit protein eL29", "gene_name": "RPL29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62244-1", "protein_name": "Small ribosomal subunit protein uS8", "gene_name": "RPS15A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22090-1", "protein_name": "Small ribosomal 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"protein_name": "Large ribosomal subunit protein eL39", "gene_name": "RPL39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96L21-1", "protein_name": "Ribosomal protein uL16-like", "gene_name": "RPL10L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26373-1", "protein_name": "Large ribosomal subunit protein eL13", "gene_name": "RPL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86US8-1", "protein_name": "Telomerase-binding protein EST1A", "gene_name": "SMG6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYD1-1", "protein_name": "Eukaryotic peptide chain release factor GTP-binding subunit ERF3B", "gene_name": "GSPT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60866-1", "protein_name": "Small ribosomal subunit protein uS10", "gene_name": "RPS20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969Q0-1", "protein_name": "Ribosomal protein eL42-like", "gene_name": "RPL36AL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61247-1", "protein_name": "Small ribosomal subunit protein eS1", "gene_name": "RPS3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62854-1", "protein_name": "Small ribosomal subunit protein eS26", "gene_name": "RPS26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62851-1", "protein_name": "Small ribosomal subunit protein eS25", "gene_name": "RPS25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08865-1", "protein_name": "Small ribosomal subunit protein uS2", "gene_name": "RPSA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62847-1", "protein_name": "Small ribosomal subunit protein eS24", "gene_name": "RPS24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62861-1", "protein_name": "Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein", "gene_name": "FAU", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62241-1", "protein_name": "Small ribosomal subunit protein eS8", "gene_name": "RPS8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62277-1", "protein_name": "Small ribosomal subunit protein uS15", "gene_name": "RPS13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39019-1", "protein_name": "Small ribosomal subunit protein eS19", "gene_name": "RPS19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92540-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG7", "gene_name": "SMG7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPR3-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG5", "gene_name": "SMG5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62269-1", "protein_name": "Small ribosomal subunit protein uS13", "gene_name": "RPS18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02878-1", "protein_name": "Large ribosomal subunit protein eL6", "gene_name": "RPL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62273-1", "protein_name": "Small ribosomal subunit protein uS14", "gene_name": "RPS29", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8ND04-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG8", "gene_name": "SMG8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPI6-1", "protein_name": "mRNA-decapping enzyme 1A", "gene_name": "DCP1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42677-1", "protein_name": "Small ribosomal subunit protein eS27", "gene_name": "RPS27", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38919-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "EIF4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61326-1", "protein_name": "Protein mago nashi homolog", "gene_name": "MAGOH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EH5-1", "protein_name": "Ribosomal protein eL39-like 2", "gene_name": "RPL39L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15287-1", "protein_name": "RNA-binding protein with serine-rich domain 1", "gene_name": "RNPS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0W8-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG9", "gene_name": "SMG9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62263-1", "protein_name": "Small ribosomal subunit protein uS11", "gene_name": "RPS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61513-1", "protein_name": "Large ribosomal subunit protein eL43", "gene_name": "RPL37A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18124-1", "protein_name": "Large ribosomal subunit protein uL30", "gene_name": "RPL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZI7-1", "protein_name": "Regulator of nonsense transcripts 3B", "gene_name": "UPF3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15880-1", "protein_name": "Small ribosomal subunit protein uS5", "gene_name": "RPS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62750-1", "protein_name": "Large ribosomal subunit protein uL23", "gene_name": "RPL23A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62280-1", "protein_name": "Small ribosomal subunit protein uS17", "gene_name": "RPS11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62249-1", "protein_name": "Small ribosomal subunit protein uS9", "gene_name": "RPS16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50914-1", "protein_name": "Large ribosomal subunit protein eL14", "gene_name": "RPL14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62906-1", "protein_name": "Large ribosomal subunit protein uL1", "gene_name": "RPL10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23396-1", "protein_name": "Small ribosomal subunit protein uS3", "gene_name": "RPS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63151-1", "protein_name": "Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform", "gene_name": "PPP2R2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A72-1", "protein_name": "Protein mago nashi homolog 2", "gene_name": "MAGOHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62841-1", "protein_name": "Small ribosomal subunit protein uS19", "gene_name": "RPS15", "tax_name": "Human" }, { "uniprot_canonical_ac": "C0HME6-1", "protein_name": "RPL36 alternative reading frame protein", "gene_name": "RPL36", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62829-1", "protein_name": "Large ribosomal subunit protein uL14", "gene_name": "RPL23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32969-1", "protein_name": "Large ribosomal subunit protein uL6", "gene_name": "RPL9P7; RPL9P8; RPL9P9; RPL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30050-1", "protein_name": "Large ribosomal subunit protein uL11", "gene_name": "RPL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q04637-1", "protein_name": "Eukaryotic translation initiation factor 4 gamma 1", "gene_name": "EIF4G1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62266-1", "protein_name": "Small ribosomal subunit protein uS12", "gene_name": "RPS23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46777-1", "protein_name": "Large ribosomal subunit protein uL18", "gene_name": "RPL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96Q15-1", "protein_name": "Serine/threonine-protein kinase SMG1", "gene_name": "SMG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62753-1", "protein_name": "Small ribosomal subunit protein eS6", "gene_name": "RPS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27635-1", "protein_name": "Large ribosomal subunit protein uL16", "gene_name": "RPL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62913-1", "protein_name": "Large ribosomal subunit protein uL5", "gene_name": "RPL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36578-1", "protein_name": "Large ribosomal subunit protein uL4", "gene_name": "RPL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HAU5-1", "protein_name": "Regulator of nonsense transcripts 2", "gene_name": "UPF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5S9-1", "protein_name": "RNA-binding protein 8A", "gene_name": "RBM8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15234-1", "protein_name": "Protein CASC3", "gene_name": "CASC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05388-1", "protein_name": "Large ribosomal subunit protein uL10", "gene_name": "RPLP0", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46779-1", "protein_name": "Large ribosomal subunit protein eL28", "gene_name": "RPL28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62857-1", "protein_name": "Small ribosomal subunit protein eS28", "gene_name": "RPS28", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPJ4-1", "protein_name": "Proline-rich nuclear receptor coactivator 2", "gene_name": "PNRC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15170-1", "protein_name": "Eukaryotic peptide chain release factor GTP-binding subunit ERF3A", "gene_name": "GSPT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62495-1", "protein_name": "Eukaryotic peptide chain release factor subunit 1", "gene_name": "ETF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61313-1", "protein_name": "Large ribosomal subunit protein eL15", "gene_name": "RPL15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62081-1", "protein_name": "Small ribosomal subunit protein eS7", "gene_name": "RPS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71UM5-1", "protein_name": "Ribosomal protein eS27-like", "gene_name": "RPS27L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30153-1", "protein_name": "Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform", "gene_name": "PPP2R1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67775-1", "protein_name": "Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform", "gene_name": "PPP2CA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92900-1", "protein_name": "Regulator of nonsense transcripts 1", "gene_name": "UPF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P18621", "url": "https://www.uniprot.org/uniprotkb/P18621" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.17363904", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 116 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The p300/CBP-associated factor (PCAF) is a cofactor of ATF4 for amino acid-regulated transcription of CHOP.", "journal": "Nucleic acids research", "date": "2007", "authors": "Cherasse Y, Maurin AC, Chaveroux C, Jousse C, Carraro V, Parry L, Deval C, Chambon C, Fafournoux P, Bruhat A", "reference": { "type": "PubMed", "id": "17726049", "url": "https://pubmed.ncbi.nlm.nih.gov/17726049" }, "referenced_glycans": [], "referenced_proteins": [ { 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"gene_name": "RPL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60866-1", "protein_name": "Small ribosomal subunit protein uS10", "gene_name": "RPS20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969Q0-1", "protein_name": "Ribosomal protein eL42-like", "gene_name": "RPL36AL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61247-1", "protein_name": "Small ribosomal subunit protein eS1", "gene_name": "RPS3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P2X3-1", "protein_name": "Protein IMPACT", "gene_name": "IMPACT", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62854-1", "protein_name": "Small ribosomal subunit protein eS26", "gene_name": "RPS26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62851-1", "protein_name": "Small ribosomal subunit protein eS25", "gene_name": "RPS25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08865-1", "protein_name": "Small ribosomal subunit protein uS2", "gene_name": "RPSA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62847-1", "protein_name": "Small ribosomal subunit protein eS24", "gene_name": "RPS24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62861-1", "protein_name": "Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein", "gene_name": "FAU", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62241-1", "protein_name": "Small ribosomal subunit protein eS8", "gene_name": "RPS8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUX1-1", "protein_name": "Glutathione-specific gamma-glutamylcyclotransferase 1", "gene_name": "CHAC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62277-1", "protein_name": "Small ribosomal subunit protein uS15", "gene_name": "RPS13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39019-1", "protein_name": "Small ribosomal subunit protein eS19", "gene_name": "RPS19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62269-1", "protein_name": "Small ribosomal subunit protein uS13", "gene_name": "RPS18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02878-1", "protein_name": "Large ribosomal subunit protein eL6", "gene_name": "RPL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62273-1", "protein_name": "Small ribosomal subunit protein uS14", "gene_name": "RPS29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17676-1", "protein_name": "CCAAT/enhancer-binding protein beta", "gene_name": "CEBPB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20042-1", "protein_name": "Eukaryotic translation initiation factor 2 subunit 2", "gene_name": "EIF2S2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2D1-1", "protein_name": "Cyclic AMP-dependent transcription factor ATF-5", "gene_name": "ATF5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42677-1", "protein_name": "Small ribosomal subunit protein eS27", "gene_name": "RPS27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EH5-1", "protein_name": "Ribosomal protein eL39-like 2", "gene_name": "RPL39L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62263-1", "protein_name": "Small ribosomal subunit protein uS11", "gene_name": "RPS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61513-1", "protein_name": "Large ribosomal subunit protein eL43", "gene_name": "RPL37A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18124-1", "protein_name": "Large ribosomal subunit protein uL30", "gene_name": "RPL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75807-1", "protein_name": "Protein phosphatase 1 regulatory subunit 15A", "gene_name": "PPP1R15A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15880-1", "protein_name": "Small ribosomal subunit protein uS5", "gene_name": "RPS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62750-1", "protein_name": "Large ribosomal subunit protein uL23", "gene_name": "RPL23A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62280-1", "protein_name": "Small ribosomal subunit protein uS17", "gene_name": "RPS11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62249-1", "protein_name": "Small ribosomal subunit protein uS9", "gene_name": "RPS16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50914-1", "protein_name": "Large ribosomal subunit protein eL14", "gene_name": "RPL14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62906-1", "protein_name": "Large ribosomal subunit protein uL1", "gene_name": "RPL10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23396-1", "protein_name": "Small ribosomal subunit protein uS3", "gene_name": "RPS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05198-1", "protein_name": "Eukaryotic translation initiation factor 2 subunit 1", "gene_name": "EIF2S1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62841-1", "protein_name": "Small ribosomal subunit protein uS19", "gene_name": "RPS15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92616-1", "protein_name": "Stalled ribosome sensor GCN1", "gene_name": "GCN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "C0HME6-1", "protein_name": "RPL36 alternative reading frame protein", "gene_name": "RPL36", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62829-1", "protein_name": "Large ribosomal subunit protein uL14", "gene_name": "RPL23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32969-1", "protein_name": "Large ribosomal subunit protein uL6", "gene_name": "RPL9P7; RPL9P8; RPL9P9; RPL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30050-1", "protein_name": "Large ribosomal subunit protein uL11", "gene_name": "RPL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62266-1", "protein_name": "Small ribosomal subunit protein uS12", "gene_name": "RPS23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46777-1", "protein_name": "Large ribosomal subunit protein uL18", "gene_name": "RPL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P2K8-1", "protein_name": "eIF-2-alpha kinase GCN2", "gene_name": "EIF2AK4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BQI3-1", "protein_name": "Eukaryotic translation initiation factor 2-alpha kinase 1", "gene_name": "EIF2AK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41091-1", "protein_name": "Eukaryotic translation initiation factor 2 subunit 3", "gene_name": "EIF2S3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62753-1", "protein_name": "Small ribosomal subunit protein eS6", "gene_name": "RPS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27635-1", "protein_name": "Large ribosomal subunit protein uL16", "gene_name": "RPL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62913-1", "protein_name": "Large ribosomal subunit protein uL5", "gene_name": "RPL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36578-1", "protein_name": "Large ribosomal subunit protein uL4", "gene_name": "RPL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05388-1", "protein_name": "Large ribosomal subunit protein uL10", "gene_name": "RPLP0", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46779-1", "protein_name": "Large ribosomal subunit protein eL28", "gene_name": "RPL28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62857-1", "protein_name": "Small ribosomal subunit protein eS28", "gene_name": "RPS28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61313-1", "protein_name": "Large ribosomal subunit protein eL15", "gene_name": "RPL15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62081-1", "protein_name": "Small ribosomal subunit protein eS7", "gene_name": "RPS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71UM5-1", "protein_name": "Ribosomal protein eS27-like", "gene_name": "RPS27L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13322-1", "protein_name": "Growth factor receptor-bound protein 10", "gene_name": "GRB10", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P18621", "url": "https://www.uniprot.org/uniprotkb/P18621" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.17726049", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 107 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Communication with the exon-junction complex and activation of nonsense-mediated decay by human Upf proteins occur in the cytoplasm.", "journal": "Molecular cell", "date": "2007", "authors": "Singh G, Jakob S, Kleedehn MG, Lykke-Andersen J", "reference": { "type": "PubMed", "id": "17803942", "url": "https://pubmed.ncbi.nlm.nih.gov/17803942" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P18621-1", "protein_name": "Large ribosomal subunit protein uL22", "gene_name": "RPL17", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H1J1-1", "protein_name": "Regulator of nonsense transcripts 3A", "gene_name": "UPF3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46776-1", "protein_name": "Large ribosomal subunit protein uL15", "gene_name": "RPL27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46782-1", "protein_name": "Small ribosomal subunit protein uS7", "gene_name": "RPS5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47914-1", "protein_name": "Large ribosomal subunit protein eL29", "gene_name": "RPL29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62244-1", "protein_name": "Small ribosomal subunit protein uS8", "gene_name": "RPS15A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22090-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 1", "gene_name": "RPS4Y1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P5R6-1", "protein_name": "Ribosomal protein eL22-like", "gene_name": "RPL22L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08708-1", "protein_name": "Small ribosomal subunit protein eS17", "gene_name": "RPS17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46783-1", "protein_name": "Small ribosomal subunit protein eS10", "gene_name": "RPS10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62917-1", "protein_name": "Large ribosomal subunit protein uL2", "gene_name": "RPL8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25398-1", "protein_name": "Small ribosomal subunit protein eS12", "gene_name": "RPS12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46781-1", "protein_name": "Small ribosomal subunit protein uS4", "gene_name": "RPS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62424-1", "protein_name": "Large ribosomal subunit protein eL8", "gene_name": "RPL7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62701-1", "protein_name": "Small ribosomal subunit protein eS4, X isoform", "gene_name": "RPS4X", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63220-1", "protein_name": "Small ribosomal subunit protein eS21", "gene_name": "RPS21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TD47-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 2", "gene_name": "RPS4Y2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11940-1", "protein_name": "Polyadenylate-binding protein 1", "gene_name": "PABPC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07020-1", "protein_name": "Large ribosomal subunit protein eL18", "gene_name": "RPL18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35268-1", "protein_name": "Large ribosomal subunit protein eL22", "gene_name": "RPL22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83881-1", "protein_name": "Large ribosomal subunit protein eL42", "gene_name": "RPL36A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61353-1", "protein_name": "Large ribosomal subunit protein eL27", "gene_name": "RPL27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNX3-1", "protein_name": "Ribosomal protein uL24-like", "gene_name": "RPL26L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02543-1", "protein_name": "Large ribosomal subunit protein eL20", "gene_name": "RPL18A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40429-1", "protein_name": "Large ribosomal subunit protein uL13", "gene_name": "RPL13A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63173-1", "protein_name": "Large ribosomal subunit protein eL38", "gene_name": "RPL38", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62910-1", "protein_name": "Large ribosomal subunit protein eL32", "gene_name": "RPL32", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39023-1", "protein_name": "Large ribosomal subunit protein uL3", "gene_name": "RPL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18077-1", "protein_name": "Large ribosomal subunit protein eL33", "gene_name": "RPL35A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61254-1", "protein_name": "Large ribosomal subunit protein uL24", "gene_name": "RPL26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84098-1", "protein_name": "Large ribosomal subunit protein eL19", "gene_name": "RPL19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62888-1", "protein_name": "Large ribosomal subunit protein 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"tax_name": "Human" }, { "uniprot_canonical_ac": "P46778-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "RPL21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05386-1", "protein_name": "Large ribosomal subunit protein P1", "gene_name": "RPLP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49207-1", "protein_name": "Large ribosomal subunit protein eL34", "gene_name": "RPL34", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62891-1", "protein_name": "Large ribosomal subunit protein eL39", "gene_name": "RPL39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96L21-1", "protein_name": "Ribosomal protein uL16-like", "gene_name": "RPL10L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26373-1", "protein_name": "Large ribosomal subunit protein eL13", "gene_name": "RPL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86US8-1", "protein_name": "Telomerase-binding protein EST1A", "gene_name": "SMG6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYD1-1", "protein_name": "Eukaryotic peptide chain release factor GTP-binding subunit ERF3B", "gene_name": "GSPT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60866-1", "protein_name": "Small ribosomal subunit protein uS10", "gene_name": "RPS20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969Q0-1", "protein_name": "Ribosomal protein eL42-like", "gene_name": "RPL36AL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61247-1", "protein_name": "Small ribosomal subunit protein eS1", "gene_name": "RPS3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62854-1", "protein_name": "Small ribosomal subunit protein eS26", "gene_name": "RPS26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62851-1", "protein_name": "Small ribosomal subunit protein eS25", "gene_name": "RPS25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08865-1", "protein_name": "Small ribosomal subunit protein uS2", "gene_name": "RPSA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62847-1", "protein_name": "Small ribosomal subunit protein eS24", "gene_name": "RPS24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62861-1", "protein_name": "Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein", "gene_name": "FAU", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62241-1", "protein_name": "Small ribosomal subunit protein eS8", "gene_name": "RPS8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62277-1", "protein_name": "Small ribosomal subunit protein uS15", "gene_name": "RPS13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39019-1", "protein_name": "Small ribosomal subunit protein eS19", "gene_name": "RPS19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92540-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG7", "gene_name": "SMG7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPR3-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG5", "gene_name": "SMG5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62269-1", "protein_name": "Small ribosomal subunit protein uS13", "gene_name": "RPS18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02878-1", "protein_name": "Large ribosomal subunit protein eL6", "gene_name": "RPL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62273-1", "protein_name": "Small ribosomal subunit protein uS14", "gene_name": "RPS29", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8ND04-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG8", "gene_name": "SMG8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPI6-1", "protein_name": "mRNA-decapping enzyme 1A", "gene_name": "DCP1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42677-1", "protein_name": "Small ribosomal subunit protein eS27", "gene_name": "RPS27", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38919-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "EIF4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61326-1", "protein_name": "Protein mago nashi homolog", "gene_name": "MAGOH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EH5-1", "protein_name": "Ribosomal protein eL39-like 2", "gene_name": "RPL39L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15287-1", "protein_name": "RNA-binding protein with serine-rich domain 1", "gene_name": "RNPS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0W8-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG9", "gene_name": "SMG9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62263-1", "protein_name": "Small ribosomal subunit protein uS11", "gene_name": "RPS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61513-1", "protein_name": "Large ribosomal subunit protein eL43", "gene_name": "RPL37A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18124-1", "protein_name": "Large ribosomal subunit protein uL30", "gene_name": "RPL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZI7-1", "protein_name": "Regulator of nonsense transcripts 3B", "gene_name": "UPF3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15880-1", "protein_name": "Small ribosomal subunit protein uS5", "gene_name": "RPS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62750-1", "protein_name": "Large ribosomal subunit protein uL23", "gene_name": "RPL23A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62280-1", "protein_name": "Small ribosomal subunit protein uS17", "gene_name": "RPS11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62249-1", "protein_name": "Small ribosomal subunit protein uS9", "gene_name": "RPS16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50914-1", "protein_name": "Large ribosomal subunit protein eL14", "gene_name": "RPL14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62906-1", "protein_name": "Large ribosomal subunit protein uL1", "gene_name": "RPL10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23396-1", "protein_name": "Small ribosomal subunit protein uS3", "gene_name": "RPS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63151-1", "protein_name": "Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform", "gene_name": "PPP2R2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A72-1", "protein_name": "Protein mago nashi homolog 2", "gene_name": "MAGOHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62841-1", "protein_name": "Small ribosomal subunit protein uS19", "gene_name": "RPS15", "tax_name": "Human" }, { "uniprot_canonical_ac": "C0HME6-1", "protein_name": "RPL36 alternative reading frame protein", "gene_name": "RPL36", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62829-1", "protein_name": "Large ribosomal subunit protein uL14", "gene_name": "RPL23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32969-1", "protein_name": "Large ribosomal subunit protein uL6", "gene_name": "RPL9P7; RPL9P8; RPL9P9; RPL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30050-1", "protein_name": "Large ribosomal subunit protein uL11", "gene_name": "RPL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q04637-1", "protein_name": "Eukaryotic translation initiation factor 4 gamma 1", "gene_name": "EIF4G1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62266-1", "protein_name": "Small ribosomal subunit protein uS12", "gene_name": "RPS23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46777-1", "protein_name": "Large ribosomal subunit protein uL18", "gene_name": "RPL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96Q15-1", "protein_name": "Serine/threonine-protein kinase SMG1", "gene_name": "SMG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62753-1", "protein_name": "Small ribosomal subunit protein eS6", "gene_name": "RPS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27635-1", "protein_name": "Large ribosomal subunit protein uL16", "gene_name": "RPL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62913-1", "protein_name": "Large ribosomal subunit protein uL5", "gene_name": "RPL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36578-1", "protein_name": "Large ribosomal subunit protein uL4", "gene_name": "RPL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HAU5-1", "protein_name": "Regulator of nonsense transcripts 2", "gene_name": "UPF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5S9-1", "protein_name": "RNA-binding protein 8A", "gene_name": "RBM8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15234-1", "protein_name": "Protein CASC3", "gene_name": "CASC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05388-1", "protein_name": "Large ribosomal subunit protein uL10", "gene_name": "RPLP0", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46779-1", "protein_name": "Large ribosomal subunit protein eL28", "gene_name": "RPL28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62857-1", "protein_name": "Small ribosomal subunit protein eS28", "gene_name": "RPS28", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPJ4-1", "protein_name": "Proline-rich nuclear receptor coactivator 2", "gene_name": "PNRC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15170-1", "protein_name": "Eukaryotic peptide chain release factor GTP-binding subunit ERF3A", "gene_name": "GSPT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62495-1", "protein_name": "Eukaryotic peptide chain release factor subunit 1", "gene_name": "ETF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61313-1", "protein_name": "Large ribosomal subunit protein eL15", "gene_name": "RPL15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62081-1", "protein_name": "Small ribosomal subunit protein eS7", "gene_name": "RPS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71UM5-1", "protein_name": "Ribosomal protein eS27-like", "gene_name": "RPS27L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30153-1", "protein_name": "Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform", "gene_name": "PPP2R1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67775-1", "protein_name": "Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform", "gene_name": "PPP2CA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92900-1", "protein_name": "Regulator of nonsense transcripts 1", "gene_name": "UPF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P18621", "url": "https://www.uniprot.org/uniprotkb/P18621" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.17803942", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 116 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Inhibition of nonsense-mediated mRNA decay (NMD) by a new chemical molecule reveals the dynamic of NMD factors in P-bodies.", "journal": "The Journal of cell biology", "date": "2007", "authors": "Durand S, Cougot N, Mahuteau-Betzer F, Nguyen CH, Grierson DS, Bertrand E, Tazi J, Lejeune F", "reference": { "type": "PubMed", "id": "17893241", "url": "https://pubmed.ncbi.nlm.nih.gov/17893241" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P18621-1", "protein_name": "Large ribosomal subunit protein uL22", "gene_name": "RPL17", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H1J1-1", "protein_name": "Regulator of nonsense transcripts 3A", "gene_name": "UPF3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46776-1", "protein_name": "Large ribosomal subunit protein uL15", "gene_name": "RPL27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46782-1", "protein_name": "Small ribosomal subunit protein uS7", "gene_name": "RPS5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47914-1", "protein_name": "Large ribosomal subunit protein eL29", "gene_name": "RPL29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62244-1", "protein_name": "Small ribosomal subunit protein uS8", "gene_name": "RPS15A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22090-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 1", "gene_name": "RPS4Y1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P5R6-1", "protein_name": "Ribosomal protein eL22-like", "gene_name": "RPL22L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08708-1", "protein_name": "Small ribosomal subunit protein eS17", "gene_name": "RPS17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46783-1", "protein_name": "Small ribosomal subunit protein eS10", "gene_name": "RPS10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62917-1", "protein_name": "Large ribosomal subunit protein uL2", "gene_name": "RPL8", "tax_name": "Human" }, 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"protein_name": "Ribosomal protein eL39-like 2", "gene_name": "RPL39L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15287-1", "protein_name": "RNA-binding protein with serine-rich domain 1", "gene_name": "RNPS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0W8-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG9", "gene_name": "SMG9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62263-1", "protein_name": "Small ribosomal subunit protein uS11", "gene_name": "RPS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61513-1", "protein_name": "Large ribosomal subunit protein eL43", "gene_name": "RPL37A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18124-1", "protein_name": "Large ribosomal subunit protein uL30", "gene_name": "RPL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZI7-1", "protein_name": "Regulator of nonsense transcripts 3B", "gene_name": "UPF3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15880-1", "protein_name": 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protein uS3", "gene_name": "RPS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63151-1", "protein_name": "Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform", "gene_name": "PPP2R2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A72-1", "protein_name": "Protein mago nashi homolog 2", "gene_name": "MAGOHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62841-1", "protein_name": "Small ribosomal subunit protein uS19", "gene_name": "RPS15", "tax_name": "Human" }, { "uniprot_canonical_ac": "C0HME6-1", "protein_name": "RPL36 alternative reading frame protein", "gene_name": "RPL36", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62829-1", "protein_name": "Large ribosomal subunit protein uL14", "gene_name": "RPL23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32969-1", "protein_name": "Large ribosomal subunit protein uL6", "gene_name": "RPL9P7; RPL9P8; RPL9P9; RPL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30050-1", "protein_name": "Large ribosomal subunit protein uL11", "gene_name": "RPL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q04637-1", "protein_name": "Eukaryotic translation initiation factor 4 gamma 1", "gene_name": "EIF4G1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62266-1", "protein_name": "Small ribosomal subunit protein uS12", "gene_name": "RPS23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46777-1", "protein_name": "Large ribosomal subunit protein uL18", "gene_name": "RPL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96Q15-1", "protein_name": "Serine/threonine-protein kinase SMG1", "gene_name": "SMG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62753-1", "protein_name": "Small ribosomal subunit protein eS6", "gene_name": "RPS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27635-1", "protein_name": "Large ribosomal subunit protein uL16", "gene_name": "RPL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62913-1", "protein_name": "Large ribosomal subunit protein uL5", "gene_name": "RPL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36578-1", "protein_name": "Large ribosomal subunit protein uL4", "gene_name": "RPL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HAU5-1", "protein_name": "Regulator of nonsense transcripts 2", "gene_name": "UPF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5S9-1", "protein_name": "RNA-binding protein 8A", "gene_name": "RBM8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15234-1", "protein_name": "Protein CASC3", "gene_name": "CASC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05388-1", "protein_name": "Large ribosomal subunit protein uL10", "gene_name": 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tumors.", "journal": "Cell Growth Differ.", "date": "1991", "authors": "Batra S K, Metzgar R S, Hollingsworth M A", "reference": { "type": "PubMed", "id": "1793733", "url": "https://pubmed.ncbi.nlm.nih.gov/1793733" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P18621-1", "protein_name": "Large ribosomal subunit protein uL22", "gene_name": "RPL17", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P18621", "url": "https://www.uniprot.org/uniprotkb/P18621" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.1793733", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" 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"protein_name": "RPL36 alternative reading frame protein", "gene_name": "RPL36", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62829-1", "protein_name": "Large ribosomal subunit protein uL14", "gene_name": "RPL23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32969-1", "protein_name": "Large ribosomal subunit protein uL6", "gene_name": "RPL9P7; RPL9P8; RPL9P9; RPL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30050-1", "protein_name": "Large ribosomal subunit protein uL11", "gene_name": "RPL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q04637-1", "protein_name": "Eukaryotic translation initiation factor 4 gamma 1", "gene_name": "EIF4G1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62266-1", "protein_name": "Small ribosomal subunit protein uS12", "gene_name": "RPS23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46777-1", "protein_name": "Large ribosomal subunit protein uL18", "gene_name": "RPL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96Q15-1", "protein_name": "Serine/threonine-protein kinase SMG1", "gene_name": "SMG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62753-1", "protein_name": "Small ribosomal subunit protein eS6", "gene_name": "RPS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27635-1", "protein_name": "Large ribosomal subunit protein uL16", "gene_name": "RPL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62913-1", "protein_name": "Large ribosomal subunit protein uL5", "gene_name": "RPL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36578-1", "protein_name": "Large ribosomal subunit protein uL4", "gene_name": "RPL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HAU5-1", "protein_name": "Regulator of nonsense transcripts 2", "gene_name": "UPF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5S9-1", "protein_name": "RNA-binding protein 8A", "gene_name": "RBM8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15234-1", "protein_name": "Protein CASC3", "gene_name": "CASC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05388-1", "protein_name": "Large ribosomal subunit protein uL10", "gene_name": "RPLP0", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46779-1", "protein_name": "Large ribosomal subunit protein eL28", "gene_name": "RPL28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62857-1", "protein_name": "Small ribosomal subunit protein eS28", "gene_name": "RPS28", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPJ4-1", "protein_name": "Proline-rich nuclear receptor coactivator 2", "gene_name": "PNRC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15170-1", "protein_name": "Eukaryotic peptide chain release factor GTP-binding subunit ERF3A", "gene_name": "GSPT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62495-1", "protein_name": "Eukaryotic peptide chain release factor subunit 1", "gene_name": "ETF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61313-1", "protein_name": "Large ribosomal subunit protein eL15", "gene_name": "RPL15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62081-1", "protein_name": "Small ribosomal subunit protein eS7", "gene_name": "RPS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71UM5-1", "protein_name": "Ribosomal protein eS27-like", "gene_name": "RPS27L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30153-1", "protein_name": "Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform", "gene_name": "PPP2R1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67775-1", "protein_name": "Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform", "gene_name": "PPP2CA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92900-1", "protein_name": "Regulator of nonsense transcripts 1", "gene_name": "UPF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P18621", "url": "https://www.uniprot.org/uniprotkb/P18621" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 509, "end_pos": 509, "sequence_org": "K", "sequence_mut": "A", "comment": "Inhibits histone mRNA degradation, ATPase activity and ATP binding. No effect on interaction with DHX34.", "evidence": [ { "database": "UniProtKB", "id": "Q92900", "url": "https://www.uniprot.org/uniprotkb/Q92900" }, { "database": "PubMed", "id": "17159905", "url": "https://pubmed.ncbi.nlm.nih.gov/17159905" }, { "database": "PubMed", "id": "16086026", "url": "https://pubmed.ncbi.nlm.nih.gov/16086026" }, { "database": "PubMed", "id": "16452507", "url": "https://pubmed.ncbi.nlm.nih.gov/16452507" }, { "database": "PubMed", "id": "25220460", "url": "https://pubmed.ncbi.nlm.nih.gov/25220460" }, { "database": "PubMed", "id": "18066079", "url": "https://pubmed.ncbi.nlm.nih.gov/18066079" } ], "uniprot_canonical_ac": "Q92900-1" } ], "record_id": "pubmed.18066079", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 116 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": 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"uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61313-1", "protein_name": "Large ribosomal subunit protein eL15", "gene_name": "RPL15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62081-1", "protein_name": "Small ribosomal subunit protein eS7", "gene_name": "RPS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71UM5-1", "protein_name": "Ribosomal protein eS27-like", "gene_name": "RPS27L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BY50-1", "protein_name": "Signal peptidase complex catalytic subunit SEC11C", "gene_name": "SEC11C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15005-1", "protein_name": "Signal peptidase complex subunit 2", "gene_name": "SPCS2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P18621", "url": "https://www.uniprot.org/uniprotkb/P18621" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.18166647", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 113 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Proximity of the poly(A)-binding protein to a premature termination codon inhibits mammalian nonsense-mediated mRNA decay.", "journal": "RNA (New York, N.Y.)", "date": "2008", "authors": "Silva AL, Ribeiro P, Inacio A, Liebhaber SA, Romao L", "reference": { "type": "PubMed", "id": "18230761", "url": "https://pubmed.ncbi.nlm.nih.gov/18230761" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P18621-1", "protein_name": "Large ribosomal subunit protein uL22", "gene_name": "RPL17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46776-1", "protein_name": "Large ribosomal subunit protein uL15", "gene_name": "RPL27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46782-1", "protein_name": "Small ribosomal subunit protein uS7", "gene_name": "RPS5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47914-1", "protein_name": "Large ribosomal subunit protein eL29", "gene_name": "RPL29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62244-1", "protein_name": "Small ribosomal subunit protein uS8", "gene_name": "RPS15A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22090-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 1", "gene_name": "RPS4Y1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P5R6-1", "protein_name": "Ribosomal protein eL22-like", "gene_name": "RPL22L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08708-1", "protein_name": "Small ribosomal subunit protein eS17", "gene_name": "RPS17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46783-1", "protein_name": "Small ribosomal subunit protein eS10", "gene_name": "RPS10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62917-1", "protein_name": "Large ribosomal subunit protein uL2", "gene_name": "RPL8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25398-1", "protein_name": "Small ribosomal subunit protein eS12", "gene_name": "RPS12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46781-1", "protein_name": "Small ribosomal subunit protein uS4", "gene_name": "RPS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62424-1", "protein_name": "Large ribosomal subunit protein eL8", "gene_name": "RPL7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62701-1", "protein_name": "Small ribosomal subunit protein eS4, X isoform", "gene_name": "RPS4X", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63220-1", "protein_name": "Small ribosomal subunit protein eS21", "gene_name": "RPS21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TD47-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 2", "gene_name": "RPS4Y2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11940-1", "protein_name": "Polyadenylate-binding protein 1", "gene_name": "PABPC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07020-1", "protein_name": "Large ribosomal subunit protein eL18", "gene_name": "RPL18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35268-1", "protein_name": "Large ribosomal subunit protein eL22", "gene_name": "RPL22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83881-1", "protein_name": "Large ribosomal subunit protein eL42", "gene_name": "RPL36A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61353-1", "protein_name": "Large ribosomal subunit protein eL27", "gene_name": "RPL27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNX3-1", "protein_name": "Ribosomal protein uL24-like", "gene_name": "RPL26L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02543-1", "protein_name": "Large ribosomal subunit protein eL20", "gene_name": "RPL18A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40429-1", "protein_name": "Large ribosomal subunit protein uL13", "gene_name": "RPL13A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63173-1", "protein_name": "Large ribosomal subunit protein eL38", "gene_name": "RPL38", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62910-1", "protein_name": "Large ribosomal subunit protein eL32", "gene_name": "RPL32", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39023-1", "protein_name": "Large ribosomal subunit protein uL3", "gene_name": "RPL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18077-1", "protein_name": "Large ribosomal subunit protein eL33", "gene_name": "RPL35A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61254-1", "protein_name": "Large ribosomal subunit protein uL24", "gene_name": "RPL26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84098-1", "protein_name": "Large ribosomal subunit protein eL19", "gene_name": "RPL19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62888-1", "protein_name": "Large ribosomal subunit protein eL30", "gene_name": "RPL30", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83731-1", "protein_name": "Large ribosomal subunit protein eL24", "gene_name": "RPL24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62899-1", "protein_name": "Large ribosomal subunit protein eL31", "gene_name": "RPL31", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62945-1", "protein_name": "Small ribosomal subunit protein eS32", "gene_name": "RPL41", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61927-1", "protein_name": "Large ribosomal subunit protein eL37", "gene_name": "RPL37", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42766-1", "protein_name": "Large ribosomal subunit protein uL29", "gene_name": "RPL35", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05387-1", "protein_name": "Large ribosomal subunit protein P2", "gene_name": "RPLP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92901-1", "protein_name": "Ribosomal protein uL3-like", "gene_name": "RPL3L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46778-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "RPL21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05386-1", "protein_name": "Large ribosomal subunit protein P1", "gene_name": "RPLP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49207-1", "protein_name": "Large ribosomal subunit protein eL34", "gene_name": "RPL34", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62891-1", "protein_name": "Large ribosomal subunit protein eL39", "gene_name": "RPL39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96L21-1", "protein_name": "Ribosomal protein uL16-like", "gene_name": "RPL10L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26373-1", "protein_name": "Large ribosomal subunit protein eL13", "gene_name": "RPL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYD1-1", "protein_name": "Eukaryotic peptide chain release factor GTP-binding subunit ERF3B", "gene_name": "GSPT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60866-1", "protein_name": "Small ribosomal subunit protein uS10", "gene_name": "RPS20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969Q0-1", "protein_name": "Ribosomal protein eL42-like", "gene_name": "RPL36AL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61247-1", "protein_name": "Small ribosomal subunit protein eS1", "gene_name": "RPS3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62854-1", "protein_name": "Small ribosomal subunit protein eS26", "gene_name": "RPS26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62851-1", "protein_name": "Small ribosomal subunit protein eS25", "gene_name": "RPS25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08865-1", "protein_name": "Small ribosomal subunit protein uS2", "gene_name": "RPSA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62847-1", "protein_name": "Small ribosomal subunit protein eS24", "gene_name": "RPS24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62861-1", "protein_name": "Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein", "gene_name": "FAU", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62241-1", "protein_name": "Small ribosomal subunit protein eS8", "gene_name": "RPS8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62277-1", "protein_name": "Small ribosomal subunit protein uS15", "gene_name": "RPS13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39019-1", "protein_name": "Small ribosomal subunit protein eS19", "gene_name": "RPS19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62269-1", "protein_name": "Small ribosomal subunit protein uS13", "gene_name": "RPS18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02878-1", "protein_name": "Large ribosomal subunit protein eL6", "gene_name": "RPL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62273-1", "protein_name": "Small ribosomal subunit protein uS14", "gene_name": "RPS29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42677-1", "protein_name": "Small ribosomal subunit protein eS27", "gene_name": "RPS27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EH5-1", "protein_name": "Ribosomal protein eL39-like 2", "gene_name": "RPL39L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62263-1", "protein_name": "Small ribosomal subunit protein uS11", "gene_name": "RPS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61513-1", "protein_name": "Large ribosomal subunit protein eL43", "gene_name": "RPL37A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18124-1", "protein_name": "Large ribosomal subunit protein uL30", "gene_name": "RPL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15880-1", "protein_name": "Small ribosomal subunit protein uS5", "gene_name": "RPS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62750-1", "protein_name": "Large ribosomal subunit protein uL23", "gene_name": "RPL23A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62280-1", "protein_name": "Small ribosomal subunit protein uS17", "gene_name": "RPS11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62249-1", "protein_name": "Small ribosomal subunit protein uS9", "gene_name": "RPS16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50914-1", "protein_name": "Large ribosomal subunit protein eL14", "gene_name": "RPL14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62906-1", "protein_name": "Large ribosomal subunit protein uL1", "gene_name": "RPL10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23396-1", "protein_name": "Small ribosomal subunit protein uS3", "gene_name": "RPS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62841-1", "protein_name": "Small ribosomal subunit protein uS19", "gene_name": "RPS15", "tax_name": "Human" }, { "uniprot_canonical_ac": "C0HME6-1", "protein_name": "RPL36 alternative reading frame protein", "gene_name": "RPL36", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62829-1", "protein_name": "Large ribosomal subunit protein uL14", "gene_name": "RPL23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32969-1", "protein_name": "Large ribosomal subunit protein uL6", "gene_name": "RPL9P7; RPL9P8; RPL9P9; RPL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30050-1", "protein_name": "Large ribosomal subunit protein uL11", "gene_name": "RPL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q04637-1", "protein_name": "Eukaryotic translation initiation factor 4 gamma 1", "gene_name": "EIF4G1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62266-1", "protein_name": "Small ribosomal subunit protein uS12", "gene_name": "RPS23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46777-1", "protein_name": "Large ribosomal subunit protein uL18", "gene_name": "RPL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62753-1", "protein_name": "Small ribosomal subunit protein eS6", "gene_name": "RPS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27635-1", "protein_name": "Large ribosomal subunit protein uL16", "gene_name": "RPL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62913-1", "protein_name": "Large ribosomal subunit protein uL5", "gene_name": "RPL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36578-1", "protein_name": "Large ribosomal subunit protein uL4", "gene_name": "RPL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05388-1", "protein_name": "Large ribosomal subunit protein uL10", "gene_name": "RPLP0", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46779-1", "protein_name": "Large ribosomal subunit protein eL28", "gene_name": "RPL28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62857-1", "protein_name": "Small ribosomal subunit protein eS28", "gene_name": "RPS28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15170-1", "protein_name": "Eukaryotic peptide chain release factor GTP-binding subunit ERF3A", "gene_name": "GSPT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62495-1", "protein_name": "Eukaryotic peptide chain release factor subunit 1", "gene_name": "ETF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61313-1", "protein_name": "Large ribosomal subunit protein eL15", "gene_name": "RPL15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62081-1", "protein_name": "Small ribosomal subunit protein eS7", "gene_name": "RPS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71UM5-1", "protein_name": "Ribosomal protein eS27-like", "gene_name": "RPS27L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92900-1", "protein_name": "Regulator of nonsense transcripts 1", "gene_name": "UPF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P18621", "url": "https://www.uniprot.org/uniprotkb/P18621" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.18230761", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 96 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Interactions between UPF1, eRFs, PABP and the exon junction complex suggest an integrated model for mammalian NMD pathways.", "journal": "The EMBO journal", "date": "2008", "authors": "Ivanov PV, Gehring NH, Kunz JB, Hentze MW, Kulozik AE", "reference": { "type": "PubMed", "id": "18256688", "url": "https://pubmed.ncbi.nlm.nih.gov/18256688" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P18621-1", "protein_name": "Large ribosomal subunit protein uL22", "gene_name": "RPL17", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H1J1-1", "protein_name": "Regulator of nonsense transcripts 3A", "gene_name": "UPF3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46776-1", "protein_name": "Large ribosomal subunit protein uL15", "gene_name": "RPL27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46782-1", "protein_name": "Small ribosomal subunit protein uS7", "gene_name": "RPS5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47914-1", "protein_name": "Large ribosomal subunit protein eL29", "gene_name": "RPL29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62244-1", "protein_name": "Small ribosomal subunit protein uS8", "gene_name": "RPS15A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22090-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 1", "gene_name": "RPS4Y1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P5R6-1", "protein_name": "Ribosomal protein eL22-like", "gene_name": "RPL22L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08708-1", "protein_name": "Small ribosomal subunit protein eS17", "gene_name": "RPS17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46783-1", "protein_name": "Small ribosomal subunit protein eS10", "gene_name": "RPS10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62917-1", "protein_name": "Large ribosomal subunit protein uL2", "gene_name": "RPL8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25398-1", "protein_name": "Small ribosomal subunit protein eS12", "gene_name": "RPS12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46781-1", "protein_name": "Small ribosomal subunit protein uS4", "gene_name": "RPS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62424-1", "protein_name": "Large ribosomal subunit protein eL8", "gene_name": "RPL7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62701-1", "protein_name": "Small ribosomal subunit protein eS4, X isoform", "gene_name": "RPS4X", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63220-1", "protein_name": "Small ribosomal subunit protein eS21", "gene_name": "RPS21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TD47-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 2", "gene_name": "RPS4Y2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11940-1", "protein_name": "Polyadenylate-binding protein 1", "gene_name": "PABPC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07020-1", "protein_name": "Large ribosomal subunit protein eL18", "gene_name": "RPL18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35268-1", "protein_name": "Large ribosomal subunit protein eL22", "gene_name": "RPL22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83881-1", "protein_name": "Large ribosomal subunit protein eL42", "gene_name": "RPL36A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61353-1", "protein_name": "Large ribosomal subunit protein eL27", "gene_name": "RPL27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNX3-1", "protein_name": "Ribosomal protein uL24-like", "gene_name": "RPL26L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02543-1", "protein_name": "Large ribosomal subunit protein eL20", "gene_name": "RPL18A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40429-1", "protein_name": "Large ribosomal subunit protein uL13", "gene_name": "RPL13A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63173-1", "protein_name": "Large ribosomal subunit protein eL38", "gene_name": "RPL38", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62910-1", "protein_name": "Large ribosomal subunit protein eL32", "gene_name": "RPL32", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39023-1", "protein_name": "Large ribosomal subunit protein uL3", "gene_name": "RPL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18077-1", "protein_name": "Large ribosomal subunit protein eL33", "gene_name": "RPL35A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61254-1", "protein_name": "Large ribosomal subunit protein uL24", "gene_name": "RPL26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84098-1", "protein_name": "Large ribosomal subunit protein eL19", "gene_name": "RPL19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62888-1", "protein_name": "Large ribosomal subunit protein eL30", "gene_name": "RPL30", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83731-1", "protein_name": "Large ribosomal subunit protein eL24", "gene_name": "RPL24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62899-1", "protein_name": "Large ribosomal subunit protein eL31", "gene_name": "RPL31", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62945-1", "protein_name": "Small ribosomal subunit protein eS32", "gene_name": "RPL41", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61927-1", "protein_name": "Large ribosomal subunit protein eL37", "gene_name": "RPL37", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42766-1", "protein_name": "Large ribosomal subunit protein uL29", "gene_name": "RPL35", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05387-1", "protein_name": "Large ribosomal subunit protein P2", "gene_name": "RPLP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92901-1", "protein_name": "Ribosomal protein uL3-like", "gene_name": "RPL3L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46778-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "RPL21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05386-1", "protein_name": "Large ribosomal subunit protein P1", "gene_name": "RPLP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49207-1", "protein_name": "Large ribosomal subunit protein eL34", "gene_name": "RPL34", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62891-1", "protein_name": "Large ribosomal subunit protein eL39", "gene_name": "RPL39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96L21-1", "protein_name": "Ribosomal protein uL16-like", "gene_name": "RPL10L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26373-1", "protein_name": "Large ribosomal subunit protein eL13", "gene_name": "RPL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86US8-1", "protein_name": "Telomerase-binding protein EST1A", "gene_name": "SMG6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYD1-1", "protein_name": "Eukaryotic peptide chain release factor GTP-binding subunit ERF3B", "gene_name": "GSPT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60866-1", "protein_name": "Small ribosomal subunit protein uS10", "gene_name": "RPS20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969Q0-1", "protein_name": "Ribosomal protein eL42-like", "gene_name": "RPL36AL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61247-1", "protein_name": "Small ribosomal subunit protein eS1", "gene_name": "RPS3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62854-1", "protein_name": "Small ribosomal subunit protein eS26", "gene_name": "RPS26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62851-1", "protein_name": "Small ribosomal subunit protein eS25", "gene_name": "RPS25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08865-1", "protein_name": "Small ribosomal subunit protein uS2", "gene_name": "RPSA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62847-1", "protein_name": "Small ribosomal subunit protein eS24", "gene_name": "RPS24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62861-1", "protein_name": "Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein", "gene_name": "FAU", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62241-1", "protein_name": "Small ribosomal subunit protein eS8", "gene_name": "RPS8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62277-1", "protein_name": "Small ribosomal subunit protein uS15", "gene_name": "RPS13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39019-1", "protein_name": "Small ribosomal subunit protein eS19", "gene_name": "RPS19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92540-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG7", "gene_name": "SMG7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPR3-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG5", "gene_name": "SMG5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62269-1", "protein_name": "Small ribosomal subunit protein uS13", "gene_name": "RPS18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02878-1", "protein_name": "Large ribosomal subunit protein eL6", "gene_name": "RPL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62273-1", "protein_name": "Small ribosomal subunit protein uS14", "gene_name": "RPS29", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8ND04-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG8", "gene_name": "SMG8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPI6-1", "protein_name": "mRNA-decapping enzyme 1A", "gene_name": "DCP1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42677-1", "protein_name": "Small ribosomal subunit protein eS27", "gene_name": "RPS27", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38919-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "EIF4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61326-1", "protein_name": "Protein mago nashi homolog", "gene_name": "MAGOH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EH5-1", "protein_name": "Ribosomal protein eL39-like 2", "gene_name": "RPL39L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15287-1", "protein_name": "RNA-binding protein with serine-rich domain 1", "gene_name": "RNPS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0W8-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG9", "gene_name": "SMG9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62263-1", "protein_name": "Small ribosomal subunit protein uS11", "gene_name": "RPS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61513-1", "protein_name": "Large ribosomal subunit protein eL43", "gene_name": "RPL37A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18124-1", "protein_name": "Large ribosomal subunit protein uL30", "gene_name": "RPL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZI7-1", "protein_name": "Regulator of nonsense transcripts 3B", "gene_name": "UPF3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15880-1", "protein_name": "Small ribosomal subunit protein uS5", "gene_name": "RPS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62750-1", "protein_name": "Large ribosomal subunit protein uL23", "gene_name": "RPL23A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62280-1", "protein_name": "Small ribosomal subunit protein uS17", "gene_name": "RPS11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62249-1", "protein_name": "Small ribosomal subunit protein uS9", "gene_name": "RPS16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50914-1", "protein_name": "Large ribosomal subunit protein eL14", "gene_name": "RPL14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62906-1", "protein_name": "Large ribosomal subunit protein uL1", "gene_name": "RPL10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23396-1", "protein_name": "Small ribosomal subunit protein uS3", "gene_name": "RPS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63151-1", "protein_name": "Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform", "gene_name": "PPP2R2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A72-1", "protein_name": "Protein mago nashi homolog 2", "gene_name": "MAGOHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62841-1", "protein_name": "Small ribosomal subunit protein uS19", "gene_name": "RPS15", "tax_name": "Human" }, { "uniprot_canonical_ac": "C0HME6-1", "protein_name": "RPL36 alternative reading frame protein", "gene_name": "RPL36", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62829-1", "protein_name": "Large ribosomal subunit protein uL14", "gene_name": "RPL23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32969-1", "protein_name": "Large ribosomal subunit protein uL6", "gene_name": "RPL9P7; RPL9P8; RPL9P9; RPL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30050-1", "protein_name": "Large ribosomal subunit protein uL11", "gene_name": "RPL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q04637-1", "protein_name": "Eukaryotic translation initiation factor 4 gamma 1", "gene_name": "EIF4G1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62266-1", "protein_name": "Small ribosomal subunit protein uS12", "gene_name": "RPS23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46777-1", "protein_name": "Large ribosomal subunit protein uL18", "gene_name": "RPL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96Q15-1", "protein_name": "Serine/threonine-protein kinase SMG1", "gene_name": "SMG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62753-1", "protein_name": "Small ribosomal subunit protein eS6", "gene_name": "RPS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27635-1", "protein_name": "Large ribosomal subunit protein uL16", "gene_name": "RPL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62913-1", "protein_name": "Large ribosomal subunit protein uL5", "gene_name": "RPL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36578-1", "protein_name": "Large ribosomal subunit protein uL4", "gene_name": "RPL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HAU5-1", "protein_name": "Regulator of nonsense transcripts 2", "gene_name": "UPF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5S9-1", "protein_name": "RNA-binding protein 8A", "gene_name": "RBM8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15234-1", "protein_name": "Protein CASC3", "gene_name": "CASC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05388-1", "protein_name": "Large ribosomal subunit protein uL10", "gene_name": "RPLP0", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46779-1", "protein_name": "Large ribosomal subunit protein eL28", "gene_name": "RPL28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62857-1", "protein_name": "Small ribosomal subunit protein eS28", "gene_name": "RPS28", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPJ4-1", "protein_name": "Proline-rich nuclear receptor coactivator 2", "gene_name": "PNRC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15170-1", "protein_name": "Eukaryotic peptide chain release factor GTP-binding subunit ERF3A", "gene_name": "GSPT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62495-1", "protein_name": "Eukaryotic peptide chain release factor subunit 1", "gene_name": "ETF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61313-1", "protein_name": "Large ribosomal subunit protein eL15", "gene_name": "RPL15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62081-1", "protein_name": "Small ribosomal subunit protein eS7", "gene_name": "RPS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71UM5-1", "protein_name": "Ribosomal protein eS27-like", "gene_name": "RPS27L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30153-1", "protein_name": "Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform", "gene_name": "PPP2R1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67775-1", "protein_name": "Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform", "gene_name": "PPP2CA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92900-1", "protein_name": "Regulator of nonsense transcripts 1", "gene_name": "UPF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P18621", "url": "https://www.uniprot.org/uniprotkb/P18621" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.18256688", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 116 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Identification of new O-GlcNAc modified proteins using a click-chemistry-based tagging.", "journal": "Analytical and bioanalytical chemistry", "date": "2008", "authors": "Gurcel C, Vercoutter-Edouart AS, Fonbonne C, Mortuaire M, Salvador A, Michalski JC, Lemoine J", "reference": { "type": "PubMed", "id": "18369606", "url": "https://pubmed.ncbi.nlm.nih.gov/18369606" }, "referenced_glycans": [ { "glytoucan_ac": "G49108TO" } ], "referenced_proteins": [ { "uniprot_canonical_ac": "P18621-1", "protein_name": "Large ribosomal subunit protein uL22", "gene_name": "RPL17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62917-1", "protein_name": "Large ribosomal subunit protein uL2", "gene_name": "RPL8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14618-1", "protein_name": "Pyruvate kinase PKM", "gene_name": "PKM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46778-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "RPL21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71U36-1", "protein_name": "Tubulin alpha-1A chain", "gene_name": "TUBA1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62241-1", "protein_name": 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"uniprot_canonical_ac": "P61927-1", "protein_name": "Large ribosomal subunit protein eL37", "gene_name": "RPL37", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42766-1", "protein_name": "Large ribosomal subunit protein uL29", "gene_name": "RPL35", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05387-1", "protein_name": "Large ribosomal subunit protein P2", "gene_name": "RPLP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92901-1", "protein_name": "Ribosomal protein uL3-like", "gene_name": "RPL3L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46778-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "RPL21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05386-1", "protein_name": "Large ribosomal subunit protein P1", "gene_name": "RPLP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49207-1", "protein_name": "Large ribosomal subunit protein eL34", "gene_name": "RPL34", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62891-1", 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"Small ribosomal subunit protein eS1", "gene_name": "RPS3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62854-1", "protein_name": "Small ribosomal subunit protein eS26", "gene_name": "RPS26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62851-1", "protein_name": "Small ribosomal subunit protein eS25", "gene_name": "RPS25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08865-1", "protein_name": "Small ribosomal subunit protein uS2", "gene_name": "RPSA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62847-1", "protein_name": "Small ribosomal subunit protein eS24", "gene_name": "RPS24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62861-1", "protein_name": "Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein", "gene_name": "FAU", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62241-1", "protein_name": "Small ribosomal subunit protein eS8", "gene_name": "RPS8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62277-1", "protein_name": "Small ribosomal subunit protein uS15", "gene_name": "RPS13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39019-1", "protein_name": "Small ribosomal subunit protein eS19", "gene_name": "RPS19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92540-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG7", "gene_name": "SMG7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPR3-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG5", "gene_name": "SMG5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62269-1", "protein_name": "Small ribosomal subunit protein uS13", "gene_name": "RPS18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02878-1", "protein_name": "Large ribosomal subunit protein eL6", "gene_name": "RPL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62273-1", "protein_name": "Small ribosomal subunit protein uS14", "gene_name": "RPS29", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8ND04-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG8", "gene_name": "SMG8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPI6-1", "protein_name": "mRNA-decapping enzyme 1A", "gene_name": "DCP1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42677-1", "protein_name": "Small ribosomal subunit protein eS27", "gene_name": "RPS27", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38919-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "EIF4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61326-1", "protein_name": "Protein mago nashi homolog", "gene_name": "MAGOH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EH5-1", "protein_name": "Ribosomal protein eL39-like 2", "gene_name": "RPL39L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15287-1", "protein_name": "RNA-binding protein with serine-rich domain 1", "gene_name": "RNPS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0W8-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG9", "gene_name": "SMG9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62263-1", "protein_name": "Small ribosomal subunit protein uS11", "gene_name": "RPS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61513-1", "protein_name": "Large ribosomal subunit protein eL43", "gene_name": "RPL37A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18124-1", "protein_name": "Large ribosomal subunit protein uL30", "gene_name": "RPL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZI7-1", "protein_name": "Regulator of nonsense transcripts 3B", "gene_name": "UPF3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15880-1", "protein_name": "Small ribosomal subunit protein uS5", "gene_name": "RPS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62750-1", "protein_name": "Large ribosomal subunit protein uL23", "gene_name": "RPL23A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62280-1", "protein_name": "Small ribosomal subunit protein uS17", "gene_name": "RPS11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62249-1", "protein_name": "Small ribosomal subunit protein uS9", "gene_name": "RPS16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50914-1", "protein_name": "Large ribosomal subunit protein eL14", "gene_name": "RPL14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62906-1", "protein_name": "Large ribosomal subunit protein uL1", "gene_name": "RPL10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23396-1", "protein_name": "Small ribosomal subunit protein uS3", "gene_name": "RPS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63151-1", "protein_name": "Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform", "gene_name": "PPP2R2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A72-1", "protein_name": "Protein mago nashi homolog 2", "gene_name": "MAGOHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62841-1", "protein_name": "Small ribosomal subunit protein uS19", "gene_name": "RPS15", "tax_name": "Human" }, { "uniprot_canonical_ac": "C0HME6-1", "protein_name": "RPL36 alternative reading frame protein", "gene_name": "RPL36", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62829-1", "protein_name": "Large ribosomal subunit protein uL14", "gene_name": "RPL23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32969-1", "protein_name": "Large ribosomal subunit protein uL6", "gene_name": "RPL9P7; RPL9P8; RPL9P9; RPL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30050-1", "protein_name": "Large ribosomal subunit protein uL11", "gene_name": "RPL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q04637-1", "protein_name": "Eukaryotic translation initiation factor 4 gamma 1", "gene_name": "EIF4G1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62266-1", "protein_name": "Small ribosomal subunit protein uS12", "gene_name": "RPS23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46777-1", "protein_name": "Large ribosomal subunit protein uL18", "gene_name": "RPL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96Q15-1", "protein_name": "Serine/threonine-protein kinase SMG1", "gene_name": "SMG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62753-1", "protein_name": "Small ribosomal subunit protein eS6", "gene_name": "RPS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27635-1", "protein_name": "Large ribosomal subunit protein uL16", "gene_name": "RPL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62913-1", "protein_name": "Large ribosomal subunit protein uL5", "gene_name": "RPL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36578-1", "protein_name": "Large ribosomal subunit protein uL4", "gene_name": "RPL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HAU5-1", "protein_name": "Regulator of nonsense transcripts 2", "gene_name": "UPF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5S9-1", "protein_name": "RNA-binding protein 8A", "gene_name": "RBM8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15234-1", "protein_name": "Protein CASC3", "gene_name": "CASC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05388-1", "protein_name": "Large ribosomal subunit protein uL10", "gene_name": "RPLP0", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46779-1", "protein_name": "Large ribosomal subunit protein eL28", "gene_name": "RPL28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62857-1", "protein_name": "Small ribosomal subunit protein eS28", "gene_name": "RPS28", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPJ4-1", "protein_name": "Proline-rich nuclear receptor coactivator 2", "gene_name": "PNRC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15170-1", "protein_name": "Eukaryotic peptide chain release factor GTP-binding subunit ERF3A", "gene_name": "GSPT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62495-1", "protein_name": "Eukaryotic peptide chain release factor subunit 1", "gene_name": "ETF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61313-1", "protein_name": "Large ribosomal subunit protein eL15", "gene_name": "RPL15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62081-1", "protein_name": "Small ribosomal subunit protein eS7", "gene_name": "RPS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71UM5-1", "protein_name": "Ribosomal protein eS27-like", "gene_name": "RPS27L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30153-1", "protein_name": "Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform", "gene_name": "PPP2R1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67775-1", "protein_name": "Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform", "gene_name": "PPP2CA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92900-1", "protein_name": "Regulator of nonsense transcripts 1", "gene_name": "UPF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P18621", "url": "https://www.uniprot.org/uniprotkb/P18621" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.18423202", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 116 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Posttranscriptional gene regulation by spatial rearrangement of the 3' untranslated region.", "journal": "PLoS biology", "date": "2008", "authors": "Eberle AB, Stalder L, Mathys H, Orozco RZ, Muhlemann O", "reference": { "type": "PubMed", "id": "18447580", "url": "https://pubmed.ncbi.nlm.nih.gov/18447580" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P18621-1", "protein_name": "Large ribosomal subunit protein uL22", "gene_name": "RPL17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46776-1", "protein_name": "Large ribosomal subunit protein uL15", "gene_name": "RPL27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46782-1", "protein_name": "Small ribosomal subunit protein uS7", "gene_name": "RPS5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47914-1", "protein_name": "Large ribosomal subunit protein eL29", "gene_name": "RPL29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62244-1", "protein_name": "Small ribosomal subunit protein uS8", "gene_name": "RPS15A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22090-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 1", "gene_name": "RPS4Y1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P5R6-1", "protein_name": "Ribosomal protein eL22-like", "gene_name": "RPL22L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08708-1", "protein_name": "Small ribosomal subunit protein eS17", "gene_name": "RPS17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46783-1", "protein_name": "Small ribosomal subunit protein eS10", "gene_name": "RPS10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62917-1", "protein_name": "Large ribosomal subunit protein uL2", "gene_name": "RPL8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25398-1", "protein_name": "Small ribosomal subunit protein eS12", "gene_name": "RPS12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46781-1", "protein_name": "Small ribosomal subunit protein uS4", "gene_name": "RPS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62424-1", "protein_name": "Large ribosomal subunit protein eL8", "gene_name": "RPL7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62701-1", "protein_name": "Small ribosomal subunit protein eS4, X isoform", "gene_name": "RPS4X", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63220-1", "protein_name": "Small ribosomal subunit protein eS21", "gene_name": "RPS21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TD47-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 2", "gene_name": "RPS4Y2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11940-1", "protein_name": "Polyadenylate-binding protein 1", "gene_name": "PABPC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07020-1", "protein_name": "Large ribosomal subunit protein eL18", "gene_name": "RPL18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35268-1", "protein_name": "Large ribosomal subunit protein eL22", "gene_name": "RPL22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83881-1", "protein_name": "Large ribosomal subunit protein eL42", "gene_name": "RPL36A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61353-1", "protein_name": "Large ribosomal subunit protein eL27", "gene_name": "RPL27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNX3-1", "protein_name": "Ribosomal protein uL24-like", "gene_name": "RPL26L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02543-1", "protein_name": "Large ribosomal subunit protein eL20", "gene_name": "RPL18A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40429-1", "protein_name": "Large ribosomal subunit protein uL13", "gene_name": "RPL13A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63173-1", "protein_name": "Large ribosomal subunit protein eL38", "gene_name": "RPL38", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62910-1", "protein_name": "Large ribosomal subunit protein eL32", "gene_name": "RPL32", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39023-1", "protein_name": "Large ribosomal subunit protein uL3", "gene_name": "RPL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18077-1", "protein_name": "Large ribosomal subunit protein eL33", "gene_name": "RPL35A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61254-1", "protein_name": "Large ribosomal subunit protein uL24", "gene_name": "RPL26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84098-1", "protein_name": "Large ribosomal subunit protein eL19", "gene_name": "RPL19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62888-1", "protein_name": "Large ribosomal subunit protein eL30", "gene_name": "RPL30", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83731-1", "protein_name": "Large ribosomal subunit protein eL24", "gene_name": "RPL24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62899-1", "protein_name": "Large ribosomal subunit protein eL31", "gene_name": "RPL31", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62945-1", "protein_name": "Small ribosomal subunit protein eS32", "gene_name": "RPL41", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61927-1", "protein_name": "Large ribosomal subunit protein eL37", "gene_name": "RPL37", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42766-1", "protein_name": "Large ribosomal subunit protein uL29", "gene_name": "RPL35", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05387-1", "protein_name": "Large ribosomal subunit protein P2", "gene_name": "RPLP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92901-1", "protein_name": "Ribosomal protein uL3-like", "gene_name": "RPL3L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46778-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "RPL21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05386-1", "protein_name": "Large ribosomal subunit protein P1", "gene_name": "RPLP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49207-1", "protein_name": "Large ribosomal subunit protein eL34", "gene_name": "RPL34", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62891-1", "protein_name": "Large ribosomal subunit protein eL39", "gene_name": "RPL39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96L21-1", "protein_name": "Ribosomal protein uL16-like", "gene_name": "RPL10L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26373-1", "protein_name": "Large ribosomal subunit protein eL13", "gene_name": "RPL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYD1-1", "protein_name": "Eukaryotic peptide chain release factor GTP-binding subunit ERF3B", "gene_name": "GSPT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60866-1", "protein_name": "Small ribosomal subunit protein uS10", "gene_name": "RPS20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969Q0-1", "protein_name": "Ribosomal protein eL42-like", "gene_name": "RPL36AL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61247-1", "protein_name": "Small ribosomal subunit protein eS1", "gene_name": "RPS3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62854-1", "protein_name": "Small ribosomal subunit protein eS26", "gene_name": "RPS26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62851-1", "protein_name": "Small ribosomal subunit protein eS25", "gene_name": "RPS25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08865-1", "protein_name": "Small ribosomal subunit protein uS2", "gene_name": "RPSA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62847-1", "protein_name": "Small ribosomal subunit protein eS24", "gene_name": "RPS24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62861-1", "protein_name": "Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein", "gene_name": "FAU", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62241-1", "protein_name": "Small ribosomal subunit protein eS8", "gene_name": "RPS8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62277-1", "protein_name": "Small ribosomal subunit protein uS15", "gene_name": "RPS13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39019-1", "protein_name": "Small ribosomal subunit protein eS19", "gene_name": "RPS19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62269-1", "protein_name": "Small ribosomal subunit protein uS13", "gene_name": "RPS18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02878-1", "protein_name": "Large ribosomal subunit protein eL6", "gene_name": "RPL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62273-1", "protein_name": "Small ribosomal subunit protein uS14", "gene_name": "RPS29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42677-1", "protein_name": "Small ribosomal subunit protein eS27", "gene_name": "RPS27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EH5-1", "protein_name": "Ribosomal protein eL39-like 2", "gene_name": "RPL39L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62263-1", "protein_name": "Small ribosomal subunit protein uS11", "gene_name": "RPS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61513-1", "protein_name": "Large ribosomal subunit protein eL43", "gene_name": "RPL37A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18124-1", "protein_name": "Large ribosomal subunit protein uL30", "gene_name": "RPL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15880-1", "protein_name": "Small ribosomal subunit protein uS5", "gene_name": "RPS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62750-1", "protein_name": "Large ribosomal subunit protein uL23", "gene_name": "RPL23A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62280-1", "protein_name": "Small ribosomal subunit protein uS17", "gene_name": "RPS11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62249-1", "protein_name": "Small ribosomal subunit protein uS9", "gene_name": "RPS16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50914-1", "protein_name": "Large ribosomal subunit protein eL14", "gene_name": "RPL14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62906-1", "protein_name": "Large ribosomal subunit protein uL1", "gene_name": "RPL10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23396-1", "protein_name": "Small ribosomal subunit protein uS3", "gene_name": "RPS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62841-1", "protein_name": "Small ribosomal subunit protein uS19", "gene_name": "RPS15", "tax_name": "Human" }, { "uniprot_canonical_ac": "C0HME6-1", "protein_name": "RPL36 alternative reading frame protein", "gene_name": "RPL36", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62829-1", "protein_name": "Large ribosomal subunit protein uL14", "gene_name": "RPL23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32969-1", "protein_name": "Large ribosomal subunit protein uL6", "gene_name": "RPL9P7; RPL9P8; RPL9P9; RPL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30050-1", "protein_name": "Large ribosomal subunit protein uL11", "gene_name": "RPL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q04637-1", "protein_name": "Eukaryotic translation initiation factor 4 gamma 1", "gene_name": "EIF4G1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62266-1", "protein_name": "Small ribosomal subunit protein uS12", "gene_name": "RPS23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46777-1", "protein_name": "Large ribosomal subunit protein uL18", "gene_name": "RPL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62753-1", "protein_name": "Small ribosomal subunit protein eS6", "gene_name": "RPS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27635-1", "protein_name": "Large ribosomal subunit protein uL16", "gene_name": "RPL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62913-1", "protein_name": "Large ribosomal subunit protein uL5", "gene_name": "RPL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36578-1", "protein_name": "Large ribosomal subunit protein uL4", "gene_name": "RPL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05388-1", "protein_name": "Large ribosomal subunit protein uL10", "gene_name": "RPLP0", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46779-1", "protein_name": "Large ribosomal subunit protein eL28", "gene_name": "RPL28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62857-1", "protein_name": "Small ribosomal subunit protein eS28", "gene_name": "RPS28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15170-1", "protein_name": "Eukaryotic peptide chain release factor GTP-binding subunit ERF3A", "gene_name": "GSPT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62495-1", "protein_name": "Eukaryotic peptide chain release factor subunit 1", "gene_name": "ETF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61313-1", "protein_name": "Large ribosomal subunit protein eL15", "gene_name": "RPL15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62081-1", "protein_name": "Small ribosomal subunit protein eS7", "gene_name": "RPS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71UM5-1", "protein_name": "Ribosomal protein eS27-like", "gene_name": "RPS27L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92900-1", "protein_name": "Regulator of nonsense transcripts 1", "gene_name": "UPF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P18621", "url": "https://www.uniprot.org/uniprotkb/P18621" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.18447580", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 96 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A competition between stimulators and antagonists of Upf complex recruitment governs human nonsense-mediated mRNA decay.", "journal": "PLoS biology", "date": "2008", "authors": "Singh G, Rebbapragada I, Lykke-Andersen J", "reference": { "type": "PubMed", "id": "18447585", "url": "https://pubmed.ncbi.nlm.nih.gov/18447585" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P18621-1", "protein_name": "Large ribosomal subunit protein uL22", "gene_name": "RPL17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46776-1", "protein_name": "Large ribosomal subunit protein uL15", "gene_name": "RPL27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46782-1", "protein_name": "Small ribosomal subunit protein uS7", "gene_name": "RPS5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47914-1", "protein_name": "Large ribosomal subunit protein eL29", "gene_name": "RPL29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62244-1", "protein_name": "Small ribosomal subunit protein uS8", "gene_name": "RPS15A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22090-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 1", "gene_name": "RPS4Y1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P5R6-1", "protein_name": "Ribosomal protein eL22-like", "gene_name": "RPL22L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08708-1", "protein_name": "Small ribosomal subunit protein eS17", "gene_name": "RPS17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46783-1", "protein_name": "Small ribosomal subunit protein eS10", "gene_name": "RPS10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62917-1", "protein_name": "Large ribosomal subunit protein uL2", "gene_name": "RPL8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25398-1", "protein_name": "Small ribosomal subunit protein eS12", "gene_name": "RPS12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46781-1", "protein_name": "Small ribosomal subunit protein uS4", "gene_name": "RPS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62424-1", "protein_name": "Large ribosomal subunit protein eL8", "gene_name": "RPL7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62701-1", "protein_name": "Small ribosomal subunit protein eS4, X isoform", "gene_name": "RPS4X", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63220-1", "protein_name": "Small ribosomal subunit protein eS21", "gene_name": "RPS21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TD47-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 2", "gene_name": "RPS4Y2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11940-1", "protein_name": "Polyadenylate-binding protein 1", "gene_name": "PABPC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07020-1", "protein_name": "Large ribosomal subunit protein eL18", "gene_name": "RPL18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35268-1", "protein_name": "Large ribosomal subunit protein eL22", "gene_name": "RPL22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83881-1", "protein_name": "Large ribosomal subunit protein eL42", "gene_name": "RPL36A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61353-1", "protein_name": "Large ribosomal subunit protein eL27", "gene_name": "RPL27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNX3-1", "protein_name": "Ribosomal protein uL24-like", "gene_name": "RPL26L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02543-1", "protein_name": "Large ribosomal subunit protein eL20", "gene_name": "RPL18A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40429-1", "protein_name": "Large ribosomal subunit protein uL13", "gene_name": "RPL13A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63173-1", "protein_name": "Large ribosomal subunit protein eL38", "gene_name": "RPL38", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62910-1", "protein_name": "Large ribosomal subunit protein eL32", "gene_name": "RPL32", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39023-1", "protein_name": "Large ribosomal subunit protein uL3", "gene_name": "RPL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18077-1", "protein_name": "Large ribosomal subunit protein eL33", "gene_name": "RPL35A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61254-1", "protein_name": "Large ribosomal subunit protein uL24", "gene_name": "RPL26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84098-1", "protein_name": "Large ribosomal subunit protein eL19", "gene_name": "RPL19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62888-1", "protein_name": "Large ribosomal subunit protein eL30", "gene_name": "RPL30", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83731-1", "protein_name": "Large ribosomal subunit protein eL24", "gene_name": "RPL24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62899-1", "protein_name": "Large ribosomal subunit protein eL31", "gene_name": "RPL31", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62945-1", "protein_name": "Small ribosomal subunit protein eS32", "gene_name": "RPL41", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61927-1", "protein_name": "Large ribosomal subunit protein eL37", "gene_name": "RPL37", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42766-1", "protein_name": "Large ribosomal subunit protein uL29", "gene_name": "RPL35", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05387-1", "protein_name": "Large ribosomal subunit protein P2", "gene_name": "RPLP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92901-1", "protein_name": "Ribosomal protein uL3-like", "gene_name": "RPL3L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46778-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "RPL21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05386-1", "protein_name": "Large ribosomal subunit protein P1", "gene_name": "RPLP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49207-1", "protein_name": "Large ribosomal subunit protein eL34", "gene_name": "RPL34", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62891-1", "protein_name": "Large ribosomal subunit protein eL39", "gene_name": "RPL39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96L21-1", "protein_name": "Ribosomal protein uL16-like", "gene_name": "RPL10L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26373-1", "protein_name": "Large ribosomal subunit protein eL13", "gene_name": "RPL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYD1-1", "protein_name": "Eukaryotic peptide chain release factor GTP-binding subunit ERF3B", "gene_name": "GSPT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60866-1", "protein_name": "Small ribosomal subunit protein uS10", "gene_name": "RPS20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969Q0-1", "protein_name": "Ribosomal protein eL42-like", "gene_name": "RPL36AL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61247-1", "protein_name": "Small ribosomal subunit protein eS1", "gene_name": "RPS3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62854-1", "protein_name": "Small ribosomal subunit protein eS26", "gene_name": "RPS26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62851-1", "protein_name": "Small ribosomal subunit protein eS25", "gene_name": "RPS25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08865-1", "protein_name": "Small ribosomal subunit protein uS2", "gene_name": "RPSA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62847-1", "protein_name": "Small ribosomal subunit protein eS24", "gene_name": "RPS24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62861-1", "protein_name": "Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein", "gene_name": "FAU", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62241-1", "protein_name": "Small ribosomal subunit protein eS8", "gene_name": "RPS8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62277-1", "protein_name": "Small ribosomal subunit protein uS15", "gene_name": "RPS13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39019-1", "protein_name": "Small ribosomal subunit protein eS19", "gene_name": "RPS19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62269-1", "protein_name": "Small ribosomal subunit protein uS13", "gene_name": "RPS18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02878-1", "protein_name": "Large ribosomal subunit protein eL6", "gene_name": "RPL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62273-1", "protein_name": "Small ribosomal subunit protein uS14", "gene_name": "RPS29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42677-1", "protein_name": "Small ribosomal subunit protein eS27", "gene_name": "RPS27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EH5-1", "protein_name": "Ribosomal protein eL39-like 2", "gene_name": "RPL39L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62263-1", "protein_name": "Small ribosomal subunit protein uS11", "gene_name": "RPS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61513-1", "protein_name": "Large ribosomal subunit protein eL43", "gene_name": "RPL37A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18124-1", "protein_name": "Large ribosomal subunit protein uL30", "gene_name": "RPL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15880-1", "protein_name": "Small ribosomal subunit protein uS5", "gene_name": "RPS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62750-1", "protein_name": "Large ribosomal subunit protein uL23", "gene_name": "RPL23A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62280-1", "protein_name": "Small ribosomal subunit protein uS17", "gene_name": "RPS11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62249-1", "protein_name": "Small ribosomal subunit protein uS9", "gene_name": "RPS16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50914-1", "protein_name": "Large ribosomal subunit protein eL14", "gene_name": "RPL14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62906-1", "protein_name": "Large ribosomal subunit protein uL1", "gene_name": "RPL10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23396-1", "protein_name": "Small ribosomal subunit protein uS3", "gene_name": "RPS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62841-1", "protein_name": "Small ribosomal subunit protein uS19", "gene_name": "RPS15", "tax_name": "Human" }, { "uniprot_canonical_ac": "C0HME6-1", "protein_name": "RPL36 alternative reading frame protein", "gene_name": "RPL36", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62829-1", "protein_name": "Large ribosomal subunit protein uL14", "gene_name": "RPL23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32969-1", "protein_name": "Large ribosomal subunit protein uL6", "gene_name": "RPL9P7; RPL9P8; RPL9P9; RPL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30050-1", "protein_name": "Large ribosomal subunit protein uL11", "gene_name": "RPL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q04637-1", "protein_name": "Eukaryotic translation initiation factor 4 gamma 1", "gene_name": "EIF4G1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62266-1", "protein_name": "Small ribosomal subunit protein uS12", "gene_name": "RPS23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46777-1", "protein_name": "Large ribosomal subunit protein uL18", "gene_name": "RPL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62753-1", "protein_name": "Small ribosomal subunit protein eS6", "gene_name": "RPS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27635-1", "protein_name": "Large ribosomal subunit protein uL16", "gene_name": "RPL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62913-1", "protein_name": "Large ribosomal subunit protein uL5", "gene_name": "RPL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36578-1", "protein_name": "Large ribosomal subunit protein uL4", "gene_name": "RPL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05388-1", "protein_name": "Large ribosomal subunit protein uL10", "gene_name": "RPLP0", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46779-1", "protein_name": "Large ribosomal subunit protein eL28", "gene_name": "RPL28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62857-1", "protein_name": "Small ribosomal subunit protein eS28", "gene_name": "RPS28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15170-1", "protein_name": "Eukaryotic peptide chain release factor GTP-binding subunit ERF3A", "gene_name": "GSPT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62495-1", "protein_name": "Eukaryotic peptide chain release factor subunit 1", "gene_name": "ETF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61313-1", "protein_name": "Large ribosomal subunit protein eL15", "gene_name": "RPL15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62081-1", "protein_name": "Small ribosomal subunit protein eS7", "gene_name": "RPS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71UM5-1", "protein_name": "Ribosomal protein eS27-like", "gene_name": "RPS27L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92900-1", "protein_name": "Regulator of nonsense transcripts 1", "gene_name": "UPF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P18621", "url": "https://www.uniprot.org/uniprotkb/P18621" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 52, "end_pos": 52, "sequence_org": "L", "sequence_mut": "K", "comment": "Impairs interaction with UPF1 and PABPC1; when associated with A-55, K-56 and A-59.", "evidence": [ { "database": "UniProtKB", "id": "Q8IYD1", "url": "https://www.uniprot.org/uniprotkb/Q8IYD1" }, { "database": "PubMed", "id": "18447585", "url": 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"comment": "Impairs interaction with UPF1 and PABPC1; when associated with K-52, A-55 and K-56.", "evidence": [ { "database": "UniProtKB", "id": "Q8IYD1", "url": "https://www.uniprot.org/uniprotkb/Q8IYD1" }, { "database": "PubMed", "id": "18447585", "url": "https://pubmed.ncbi.nlm.nih.gov/18447585" } ], "uniprot_canonical_ac": "Q8IYD1-1" } ], "record_id": "pubmed.18447585", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 96 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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"count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "SRP keeps polypeptides translocation-competent by slowing translation to match limiting ER-targeting sites.", "journal": "Cell", "date": "2008", "authors": "Lakkaraju AK, Mary C, Scherrer A, Johnson AE, Strub K", "reference": { "type": "PubMed", "id": "18455985", "url": "https://pubmed.ncbi.nlm.nih.gov/18455985" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P18621-1", "protein_name": "Large ribosomal subunit protein uL22", "gene_name": "RPL17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46776-1", "protein_name": "Large ribosomal subunit protein uL15", "gene_name": "RPL27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46782-1", "protein_name": "Small ribosomal subunit protein uS7", "gene_name": "RPS5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47914-1", "protein_name": "Large ribosomal subunit protein eL29", "gene_name": "RPL29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62244-1", "protein_name": "Small ribosomal subunit protein uS8", "gene_name": "RPS15A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22090-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 1", "gene_name": "RPS4Y1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P5R6-1", "protein_name": "Ribosomal protein eL22-like", "gene_name": "RPL22L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08708-1", "protein_name": "Small ribosomal subunit protein eS17", "gene_name": "RPS17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67812-1", "protein_name": "Signal peptidase complex catalytic subunit SEC11A", "gene_name": "SEC11A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46783-1", "protein_name": "Small ribosomal subunit protein eS10", "gene_name": "RPS10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62917-1", "protein_name": "Large ribosomal subunit protein uL2", "gene_name": "RPL8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25398-1", "protein_name": "Small ribosomal subunit protein eS12", "gene_name": "RPS12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46781-1", "protein_name": "Small ribosomal subunit protein uS4", "gene_name": "RPS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62424-1", "protein_name": "Large ribosomal subunit protein eL8", "gene_name": "RPL7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62701-1", "protein_name": "Small ribosomal subunit protein eS4, X isoform", "gene_name": "RPS4X", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63220-1", "protein_name": "Small ribosomal subunit protein eS21", "gene_name": "RPS21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TD47-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 2", "gene_name": "RPS4Y2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07020-1", "protein_name": "Large ribosomal subunit protein eL18", "gene_name": "RPL18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35268-1", "protein_name": "Large ribosomal subunit protein eL22", "gene_name": "RPL22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83881-1", "protein_name": "Large ribosomal subunit protein eL42", "gene_name": "RPL36A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61353-1", "protein_name": "Large ribosomal subunit protein eL27", "gene_name": "RPL27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNX3-1", "protein_name": "Ribosomal protein uL24-like", "gene_name": "RPL26L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02543-1", "protein_name": "Large ribosomal subunit protein eL20", "gene_name": "RPL18A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40429-1", "protein_name": "Large ribosomal subunit protein uL13", "gene_name": "RPL13A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63173-1", "protein_name": "Large ribosomal subunit protein eL38", "gene_name": "RPL38", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62910-1", "protein_name": "Large ribosomal subunit protein eL32", "gene_name": "RPL32", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39023-1", "protein_name": "Large ribosomal subunit protein uL3", "gene_name": "RPL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18077-1", "protein_name": "Large ribosomal subunit protein eL33", "gene_name": "RPL35A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61254-1", "protein_name": "Large ribosomal subunit protein uL24", "gene_name": "RPL26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84098-1", "protein_name": "Large ribosomal subunit protein eL19", "gene_name": "RPL19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62888-1", "protein_name": "Large ribosomal subunit protein eL30", "gene_name": "RPL30", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83731-1", "protein_name": "Large ribosomal subunit protein eL24", "gene_name": "RPL24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62899-1", "protein_name": "Large ribosomal subunit protein eL31", "gene_name": "RPL31", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62945-1", "protein_name": "Small ribosomal subunit protein eS32", "gene_name": "RPL41", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61927-1", "protein_name": "Large ribosomal subunit protein eL37", "gene_name": "RPL37", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42766-1", "protein_name": "Large ribosomal subunit protein uL29", "gene_name": "RPL35", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05387-1", "protein_name": "Large ribosomal subunit protein P2", "gene_name": "RPLP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92901-1", "protein_name": "Ribosomal protein uL3-like", "gene_name": "RPL3L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46778-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "RPL21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05386-1", "protein_name": "Large ribosomal subunit protein P1", "gene_name": "RPLP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49207-1", "protein_name": "Large ribosomal subunit protein eL34", "gene_name": "RPL34", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62891-1", "protein_name": "Large ribosomal subunit protein eL39", "gene_name": "RPL39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96L21-1", "protein_name": "Ribosomal protein uL16-like", "gene_name": "RPL10L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26373-1", "protein_name": "Large ribosomal subunit protein eL13", "gene_name": "RPL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60866-1", "protein_name": "Small ribosomal subunit protein uS10", "gene_name": "RPS20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969Q0-1", "protein_name": "Ribosomal protein eL42-like", "gene_name": "RPL36AL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61247-1", "protein_name": "Small ribosomal subunit protein eS1", "gene_name": "RPS3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62854-1", "protein_name": "Small ribosomal subunit protein eS26", "gene_name": "RPS26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62851-1", "protein_name": "Small ribosomal subunit protein eS25", "gene_name": "RPS25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08865-1", "protein_name": "Small ribosomal subunit protein uS2", "gene_name": "RPSA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62847-1", "protein_name": "Small ribosomal subunit protein eS24", "gene_name": "RPS24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62861-1", "protein_name": "Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein", "gene_name": "FAU", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62241-1", "protein_name": "Small ribosomal subunit protein eS8", "gene_name": "RPS8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39656-1", "protein_name": "Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit", "gene_name": "DDOST", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62277-1", "protein_name": "Small ribosomal subunit protein uS15", "gene_name": "RPS13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39019-1", "protein_name": "Small ribosomal subunit protein eS19", "gene_name": "RPS19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H9S3-1", "protein_name": "Protein transport protein Sec61 subunit alpha isoform 2", "gene_name": "SEC61A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62269-1", "protein_name": "Small ribosomal subunit protein uS13", "gene_name": "RPS18", "tax_name": "Human" }, { "uniprot_canonical_ac": "O76094-1", "protein_name": "Signal recognition particle subunit SRP72", "gene_name": "SRP72", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHB9-1", "protein_name": "Signal recognition particle subunit SRP68", "gene_name": "SRP68", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09132-1", "protein_name": "Signal recognition particle 19 kDa protein", "gene_name": "SRP19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04844-1", "protein_name": "Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2", "gene_name": "RPN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02878-1", "protein_name": "Large ribosomal subunit protein eL6", "gene_name": "RPL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62273-1", "protein_name": "Small ribosomal subunit protein uS14", "gene_name": "RPS29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04843-1", "protein_name": "Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1", "gene_name": "RPN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15629-1", "protein_name": "Translocating chain-associated membrane protein 1", "gene_name": "TRAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42677-1", "protein_name": "Small ribosomal subunit protein eS27", "gene_name": "RPS27", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60468-1", "protein_name": "Protein transport protein Sec61 subunit beta", "gene_name": "SEC61B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EH5-1", "protein_name": "Ribosomal protein eL39-like 2", "gene_name": "RPL39L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62263-1", "protein_name": "Small ribosomal subunit protein uS11", "gene_name": "RPS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61513-1", "protein_name": "Large ribosomal subunit protein eL43", "gene_name": "RPL37A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18124-1", "protein_name": "Large ribosomal subunit protein uL30", "gene_name": "RPL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNL2-1", "protein_name": "Translocon-associated protein subunit gamma", "gene_name": "SSR3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15880-1", "protein_name": "Small ribosomal subunit protein uS5", "gene_name": "RPS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62750-1", "protein_name": "Large ribosomal subunit protein uL23", "gene_name": "RPL23A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62280-1", "protein_name": "Small ribosomal subunit protein uS17", "gene_name": "RPS11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62249-1", "protein_name": "Small ribosomal subunit protein uS9", "gene_name": "RPS16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50914-1", "protein_name": "Large ribosomal subunit protein eL14", "gene_name": "RPL14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62906-1", "protein_name": "Large ribosomal subunit protein uL1", "gene_name": "RPL10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P43307-1", "protein_name": "Translocon-associated protein subunit alpha", "gene_name": "SSR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23396-1", "protein_name": "Small ribosomal subunit protein uS3", "gene_name": "RPS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49458-1", "protein_name": "Signal recognition particle 9 kDa protein", "gene_name": "SRP9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62841-1", "protein_name": "Small ribosomal subunit protein uS19", "gene_name": "RPS15", "tax_name": "Human" }, { "uniprot_canonical_ac": "C0HME6-1", "protein_name": "RPL36 alternative reading frame protein", "gene_name": "RPL36", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62829-1", "protein_name": "Large ribosomal subunit protein uL14", "gene_name": "RPL23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32969-1", "protein_name": "Large ribosomal subunit protein uL6", "gene_name": "RPL9P7; RPL9P8; RPL9P9; RPL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61619-1", "protein_name": "Protein transport protein Sec61 subunit alpha isoform 1", "gene_name": "SEC61A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30050-1", "protein_name": "Large ribosomal subunit protein uL11", "gene_name": "RPL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62266-1", "protein_name": "Small ribosomal subunit protein uS12", "gene_name": "RPS23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46777-1", "protein_name": "Large ribosomal subunit protein uL18", "gene_name": "RPL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62753-1", "protein_name": "Small ribosomal subunit protein eS6", "gene_name": "RPS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60059-1", "protein_name": "Protein transport protein Sec61 subunit gamma", "gene_name": "SEC61G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27635-1", "protein_name": "Large ribosomal subunit protein uL16", "gene_name": "RPL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62913-1", "protein_name": "Large ribosomal subunit protein uL5", "gene_name": "RPL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36578-1", "protein_name": "Large ribosomal subunit protein uL4", "gene_name": "RPL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08240-1", "protein_name": "Signal recognition particle receptor subunit alpha", "gene_name": "SRPRA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61011-1", "protein_name": "Signal recognition particle subunit SRP54", "gene_name": "SRP54", "tax_name": "Human" }, { "uniprot_canonical_ac": "P43308-1", "protein_name": "Translocon-associated protein subunit beta", "gene_name": "SSR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P37108-1", "protein_name": "Signal recognition particle 14 kDa protein", "gene_name": "SRP14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5M8-1", "protein_name": "Signal recognition particle receptor subunit beta", "gene_name": "SRPRB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51571-1", "protein_name": "Translocon-associated protein subunit delta", "gene_name": "SSR4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61009-1", "protein_name": "Signal peptidase complex subunit 3", "gene_name": "SPCS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6A9-1", "protein_name": "Signal peptidase complex subunit 1", "gene_name": "SPCS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05388-1", "protein_name": "Large ribosomal subunit protein uL10", "gene_name": "RPLP0", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46779-1", "protein_name": "Large ribosomal subunit protein eL28", "gene_name": "RPL28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62857-1", "protein_name": "Small ribosomal subunit protein eS28", "gene_name": "RPS28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61313-1", "protein_name": "Large ribosomal subunit protein eL15", "gene_name": "RPL15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62081-1", "protein_name": "Small ribosomal subunit protein eS7", "gene_name": "RPS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71UM5-1", "protein_name": "Ribosomal protein eS27-like", "gene_name": "RPS27L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BY50-1", "protein_name": "Signal peptidase complex catalytic subunit SEC11C", "gene_name": "SEC11C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15005-1", "protein_name": "Signal peptidase complex subunit 2", "gene_name": "SPCS2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P18621", "url": "https://www.uniprot.org/uniprotkb/P18621" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.18455985", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 113 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The meaning of nonsense.", "journal": "Trends in cell biology", "date": "2008", "authors": "Stalder L, Muhlemann O", "reference": { "type": "PubMed", "id": "18524595", "url": "https://pubmed.ncbi.nlm.nih.gov/18524595" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P18621-1", "protein_name": "Large ribosomal subunit protein uL22", "gene_name": "RPL17", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H1J1-1", "protein_name": "Regulator of nonsense transcripts 3A", "gene_name": "UPF3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46776-1", "protein_name": "Large ribosomal subunit protein uL15", "gene_name": "RPL27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46782-1", "protein_name": "Small ribosomal subunit protein uS7", "gene_name": "RPS5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47914-1", "protein_name": "Large ribosomal subunit protein eL29", "gene_name": "RPL29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62244-1", "protein_name": "Small ribosomal subunit protein uS8", "gene_name": "RPS15A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22090-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 1", "gene_name": "RPS4Y1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P5R6-1", "protein_name": "Ribosomal protein eL22-like", "gene_name": "RPL22L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08708-1", "protein_name": "Small ribosomal subunit protein eS17", "gene_name": "RPS17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46783-1", "protein_name": "Small ribosomal subunit protein eS10", "gene_name": "RPS10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62917-1", "protein_name": "Large ribosomal subunit protein uL2", "gene_name": "RPL8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25398-1", "protein_name": "Small ribosomal subunit protein eS12", "gene_name": "RPS12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46781-1", "protein_name": "Small ribosomal subunit protein uS4", "gene_name": "RPS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62424-1", "protein_name": "Large ribosomal subunit protein eL8", "gene_name": "RPL7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62701-1", "protein_name": "Small ribosomal subunit protein eS4, X isoform", "gene_name": "RPS4X", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63220-1", "protein_name": "Small ribosomal subunit protein eS21", "gene_name": "RPS21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TD47-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 2", "gene_name": "RPS4Y2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11940-1", "protein_name": "Polyadenylate-binding protein 1", "gene_name": "PABPC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07020-1", "protein_name": "Large ribosomal subunit protein eL18", "gene_name": "RPL18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35268-1", "protein_name": "Large ribosomal subunit protein eL22", "gene_name": "RPL22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83881-1", "protein_name": "Large ribosomal subunit protein eL42", "gene_name": "RPL36A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61353-1", "protein_name": "Large ribosomal subunit protein eL27", "gene_name": "RPL27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNX3-1", "protein_name": "Ribosomal protein uL24-like", "gene_name": "RPL26L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02543-1", "protein_name": "Large ribosomal subunit protein eL20", "gene_name": "RPL18A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40429-1", "protein_name": "Large ribosomal subunit protein uL13", "gene_name": "RPL13A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63173-1", "protein_name": "Large ribosomal subunit protein eL38", "gene_name": "RPL38", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62910-1", "protein_name": "Large ribosomal subunit protein eL32", "gene_name": "RPL32", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39023-1", "protein_name": "Large ribosomal subunit protein uL3", "gene_name": "RPL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18077-1", "protein_name": "Large ribosomal subunit protein eL33", "gene_name": "RPL35A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61254-1", "protein_name": "Large ribosomal subunit protein uL24", "gene_name": "RPL26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84098-1", "protein_name": "Large ribosomal subunit protein eL19", "gene_name": "RPL19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62888-1", "protein_name": "Large ribosomal subunit protein eL30", "gene_name": "RPL30", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83731-1", "protein_name": "Large ribosomal subunit protein eL24", "gene_name": "RPL24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62899-1", "protein_name": "Large ribosomal subunit protein eL31", "gene_name": "RPL31", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62945-1", "protein_name": "Small ribosomal subunit protein eS32", "gene_name": "RPL41", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61927-1", "protein_name": "Large ribosomal subunit protein eL37", "gene_name": "RPL37", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42766-1", "protein_name": "Large ribosomal subunit protein uL29", "gene_name": "RPL35", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05387-1", "protein_name": "Large ribosomal subunit protein P2", "gene_name": "RPLP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92901-1", "protein_name": "Ribosomal protein uL3-like", "gene_name": "RPL3L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46778-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "RPL21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05386-1", "protein_name": "Large ribosomal subunit protein P1", "gene_name": "RPLP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49207-1", "protein_name": "Large ribosomal subunit protein eL34", "gene_name": "RPL34", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62891-1", "protein_name": "Large ribosomal subunit protein eL39", "gene_name": "RPL39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96L21-1", "protein_name": "Ribosomal protein uL16-like", "gene_name": "RPL10L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26373-1", "protein_name": "Large ribosomal subunit protein eL13", "gene_name": "RPL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86US8-1", "protein_name": "Telomerase-binding protein EST1A", "gene_name": "SMG6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYD1-1", "protein_name": "Eukaryotic peptide chain release factor GTP-binding subunit ERF3B", "gene_name": "GSPT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60866-1", "protein_name": "Small ribosomal subunit protein uS10", "gene_name": "RPS20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969Q0-1", "protein_name": "Ribosomal protein eL42-like", "gene_name": "RPL36AL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61247-1", "protein_name": "Small ribosomal subunit protein eS1", "gene_name": "RPS3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62854-1", "protein_name": "Small ribosomal subunit protein eS26", "gene_name": "RPS26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62851-1", "protein_name": "Small ribosomal subunit protein eS25", "gene_name": "RPS25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08865-1", "protein_name": "Small ribosomal subunit protein uS2", "gene_name": "RPSA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62847-1", "protein_name": "Small ribosomal subunit protein eS24", "gene_name": "RPS24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62861-1", "protein_name": "Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein", "gene_name": "FAU", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62241-1", "protein_name": "Small ribosomal subunit protein eS8", "gene_name": "RPS8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62277-1", "protein_name": "Small ribosomal subunit protein uS15", "gene_name": "RPS13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39019-1", "protein_name": "Small ribosomal subunit protein eS19", "gene_name": "RPS19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92540-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG7", "gene_name": "SMG7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPR3-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG5", "gene_name": "SMG5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62269-1", "protein_name": "Small ribosomal subunit protein uS13", "gene_name": "RPS18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02878-1", "protein_name": "Large ribosomal subunit protein eL6", "gene_name": "RPL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62273-1", "protein_name": "Small ribosomal subunit protein uS14", "gene_name": "RPS29", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8ND04-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG8", "gene_name": "SMG8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPI6-1", "protein_name": "mRNA-decapping enzyme 1A", "gene_name": "DCP1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42677-1", "protein_name": "Small ribosomal subunit protein eS27", "gene_name": "RPS27", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38919-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "EIF4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61326-1", "protein_name": "Protein mago nashi homolog", "gene_name": "MAGOH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EH5-1", "protein_name": "Ribosomal protein eL39-like 2", "gene_name": "RPL39L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15287-1", "protein_name": "RNA-binding protein with serine-rich domain 1", "gene_name": "RNPS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0W8-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG9", "gene_name": "SMG9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62263-1", "protein_name": "Small ribosomal subunit protein uS11", "gene_name": "RPS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61513-1", "protein_name": "Large ribosomal subunit protein eL43", "gene_name": "RPL37A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18124-1", "protein_name": "Large ribosomal subunit protein uL30", "gene_name": "RPL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZI7-1", "protein_name": "Regulator of nonsense transcripts 3B", "gene_name": "UPF3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15880-1", "protein_name": "Small ribosomal subunit protein uS5", "gene_name": "RPS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62750-1", "protein_name": "Large ribosomal subunit protein uL23", "gene_name": "RPL23A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62280-1", "protein_name": "Small ribosomal subunit protein uS17", "gene_name": "RPS11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62249-1", "protein_name": "Small ribosomal subunit protein uS9", "gene_name": "RPS16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50914-1", "protein_name": "Large ribosomal subunit protein eL14", "gene_name": "RPL14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62906-1", "protein_name": "Large ribosomal subunit protein uL1", "gene_name": "RPL10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23396-1", "protein_name": "Small ribosomal subunit protein uS3", "gene_name": "RPS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63151-1", "protein_name": "Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform", "gene_name": "PPP2R2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A72-1", "protein_name": "Protein mago nashi homolog 2", "gene_name": "MAGOHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62841-1", "protein_name": "Small ribosomal subunit protein uS19", "gene_name": "RPS15", "tax_name": "Human" }, { "uniprot_canonical_ac": "C0HME6-1", "protein_name": "RPL36 alternative reading frame protein", "gene_name": "RPL36", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62829-1", "protein_name": "Large ribosomal subunit protein uL14", "gene_name": "RPL23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32969-1", "protein_name": "Large ribosomal subunit protein uL6", "gene_name": "RPL9P7; RPL9P8; RPL9P9; RPL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30050-1", "protein_name": "Large ribosomal subunit protein uL11", "gene_name": "RPL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q04637-1", "protein_name": "Eukaryotic translation initiation factor 4 gamma 1", "gene_name": "EIF4G1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62266-1", "protein_name": "Small ribosomal subunit protein uS12", "gene_name": "RPS23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46777-1", "protein_name": "Large ribosomal subunit protein uL18", "gene_name": "RPL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96Q15-1", "protein_name": "Serine/threonine-protein kinase SMG1", "gene_name": "SMG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62753-1", "protein_name": "Small ribosomal subunit protein eS6", "gene_name": "RPS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27635-1", "protein_name": "Large ribosomal subunit protein uL16", "gene_name": "RPL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62913-1", "protein_name": "Large ribosomal subunit protein uL5", "gene_name": "RPL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36578-1", "protein_name": "Large ribosomal subunit protein uL4", "gene_name": "RPL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HAU5-1", "protein_name": "Regulator of nonsense transcripts 2", "gene_name": "UPF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5S9-1", "protein_name": "RNA-binding protein 8A", "gene_name": "RBM8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15234-1", "protein_name": "Protein CASC3", "gene_name": "CASC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05388-1", "protein_name": "Large ribosomal subunit protein uL10", "gene_name": "RPLP0", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46779-1", "protein_name": "Large ribosomal subunit protein eL28", "gene_name": "RPL28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62857-1", "protein_name": "Small ribosomal subunit protein eS28", "gene_name": "RPS28", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPJ4-1", "protein_name": "Proline-rich nuclear receptor coactivator 2", "gene_name": "PNRC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15170-1", "protein_name": "Eukaryotic peptide chain release factor GTP-binding subunit ERF3A", "gene_name": "GSPT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62495-1", "protein_name": "Eukaryotic peptide chain release factor subunit 1", "gene_name": "ETF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61313-1", "protein_name": "Large ribosomal subunit protein eL15", "gene_name": "RPL15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62081-1", "protein_name": "Small ribosomal subunit protein eS7", "gene_name": "RPS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71UM5-1", "protein_name": "Ribosomal protein eS27-like", "gene_name": "RPS27L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30153-1", "protein_name": "Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform", "gene_name": "PPP2R1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67775-1", "protein_name": "Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform", "gene_name": "PPP2CA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92900-1", "protein_name": "Regulator of nonsense transcripts 1", "gene_name": "UPF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P18621", "url": "https://www.uniprot.org/uniprotkb/P18621" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.18524595", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 116 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "HemK2 protein, encoded on human chromosome 21, methylates translation termination factor eRF1.", "journal": "FEBS letters", "date": "2008", "authors": "Figaro S, Scrima N, Buckingham RH, Heurgue-Hamard V", "reference": { "type": "PubMed", "id": "18539146", "url": "https://pubmed.ncbi.nlm.nih.gov/18539146" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P18621-1", "protein_name": "Large ribosomal subunit protein uL22", "gene_name": "RPL17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46776-1", "protein_name": "Large ribosomal subunit protein uL15", "gene_name": "RPL27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46782-1", "protein_name": "Small ribosomal subunit protein uS7", "gene_name": "RPS5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47914-1", "protein_name": "Large ribosomal subunit protein eL29", "gene_name": "RPL29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62244-1", "protein_name": "Small ribosomal subunit protein uS8", "gene_name": "RPS15A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22090-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 1", "gene_name": "RPS4Y1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P5R6-1", "protein_name": "Ribosomal protein eL22-like", "gene_name": "RPL22L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08708-1", "protein_name": "Small ribosomal subunit protein eS17", "gene_name": "RPS17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46783-1", "protein_name": "Small ribosomal subunit protein eS10", "gene_name": "RPS10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62917-1", "protein_name": "Large ribosomal subunit protein uL2", "gene_name": "RPL8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25398-1", "protein_name": "Small ribosomal subunit protein eS12", "gene_name": "RPS12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46781-1", "protein_name": "Small ribosomal subunit protein uS4", "gene_name": "RPS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62424-1", "protein_name": "Large ribosomal subunit protein eL8", "gene_name": "RPL7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62701-1", "protein_name": "Small ribosomal subunit protein eS4, X isoform", "gene_name": "RPS4X", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63220-1", "protein_name": "Small ribosomal subunit protein eS21", "gene_name": "RPS21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TD47-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 2", "gene_name": "RPS4Y2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UI30-1", "protein_name": "Multifunctional methyltransferase subunit TRM112-like protein", "gene_name": "TRMT112", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HBK9-1", "protein_name": "Arsenite methyltransferase", "gene_name": "AS3MT", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBK8-2", "protein_name": "Methionine synthase reductase", "gene_name": "MTRR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07020-1", "protein_name": "Large ribosomal subunit protein eL18", "gene_name": "RPL18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35268-1", "protein_name": "Large ribosomal subunit protein eL22", "gene_name": "RPL22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83881-1", "protein_name": "Large ribosomal subunit protein eL42", "gene_name": "RPL36A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61353-1", "protein_name": "Large ribosomal subunit protein eL27", "gene_name": "RPL27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNX3-1", "protein_name": "Ribosomal protein uL24-like", "gene_name": "RPL26L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02543-1", "protein_name": "Large ribosomal subunit protein eL20", "gene_name": "RPL18A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40429-1", "protein_name": "Large ribosomal subunit protein uL13", "gene_name": "RPL13A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63173-1", "protein_name": "Large ribosomal subunit protein eL38", "gene_name": "RPL38", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62910-1", "protein_name": "Large ribosomal subunit protein eL32", "gene_name": "RPL32", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39023-1", "protein_name": "Large ribosomal subunit protein uL3", "gene_name": "RPL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18077-1", "protein_name": "Large ribosomal subunit protein eL33", "gene_name": "RPL35A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61254-1", "protein_name": "Large ribosomal subunit protein uL24", "gene_name": "RPL26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84098-1", "protein_name": "Large ribosomal subunit protein eL19", "gene_name": "RPL19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62888-1", "protein_name": "Large ribosomal subunit protein eL30", "gene_name": "RPL30", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83731-1", "protein_name": "Large ribosomal subunit protein eL24", "gene_name": "RPL24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62899-1", "protein_name": "Large ribosomal subunit protein eL31", "gene_name": "RPL31", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62945-1", "protein_name": "Small ribosomal subunit protein eS32", "gene_name": "RPL41", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61927-1", "protein_name": "Large ribosomal subunit protein eL37", "gene_name": "RPL37", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42766-1", "protein_name": "Large ribosomal subunit protein uL29", "gene_name": "RPL35", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05387-1", "protein_name": "Large ribosomal subunit protein P2", "gene_name": "RPLP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92901-1", "protein_name": "Ribosomal protein uL3-like", "gene_name": "RPL3L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46778-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "RPL21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05386-1", "protein_name": "Large ribosomal subunit protein P1", "gene_name": "RPLP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49207-1", "protein_name": "Large ribosomal subunit protein eL34", "gene_name": "RPL34", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62891-1", "protein_name": "Large ribosomal subunit protein eL39", "gene_name": "RPL39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96L21-1", "protein_name": "Ribosomal protein uL16-like", "gene_name": "RPL10L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26373-1", "protein_name": "Large ribosomal subunit protein eL13", "gene_name": "RPL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P21964-1", "protein_name": "Catechol O-methyltransferase", "gene_name": "COMT", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05177-1", "protein_name": "Cytochrome P450 1A2", "gene_name": "CYP1A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYD1-1", "protein_name": "Eukaryotic peptide chain release factor GTP-binding subunit ERF3B", "gene_name": "GSPT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78417-1", "protein_name": "Glutathione S-transferase omega-1", "gene_name": "GSTO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60866-1", "protein_name": "Small ribosomal subunit protein uS10", "gene_name": "RPS20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q00266-1", "protein_name": "S-adenosylmethionine synthase isoform type-1", "gene_name": "MAT1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969Q0-1", "protein_name": "Ribosomal protein eL42-like", "gene_name": "RPL36AL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61247-1", "protein_name": "Small ribosomal subunit protein eS1", "gene_name": "RPS3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40261-1", "protein_name": "Nicotinamide N-methyltransferase", "gene_name": "NNMT", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62854-1", "protein_name": "Small ribosomal subunit protein eS26", "gene_name": "RPS26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62851-1", "protein_name": "Small ribosomal subunit protein eS25", "gene_name": "RPS25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08865-1", "protein_name": "Small ribosomal subunit protein uS2", "gene_name": "RPSA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62847-1", "protein_name": "Small ribosomal subunit protein eS24", "gene_name": "RPS24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62861-1", "protein_name": "Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein", "gene_name": "FAU", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62241-1", "protein_name": "Small ribosomal subunit protein eS8", "gene_name": "RPS8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99707-1", "protein_name": "Methionine synthase", "gene_name": "MTR", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62277-1", "protein_name": "Small ribosomal subunit protein uS15", "gene_name": "RPS13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39019-1", "protein_name": "Small ribosomal subunit protein eS19", "gene_name": "RPS19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62269-1", "protein_name": "Small ribosomal subunit protein uS13", "gene_name": "RPS18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02878-1", "protein_name": "Large ribosomal subunit protein eL6", "gene_name": "RPL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62273-1", "protein_name": "Small ribosomal subunit protein uS14", "gene_name": "RPS29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42677-1", "protein_name": "Small ribosomal subunit protein eS27", "gene_name": "RPS27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EH5-1", "protein_name": "Ribosomal protein eL39-like 2", "gene_name": "RPL39L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62263-1", "protein_name": "Small ribosomal subunit protein uS11", "gene_name": "RPS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61513-1", "protein_name": "Large ribosomal subunit protein eL43", "gene_name": "RPL37A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NZL9-1", "protein_name": "Methionine adenosyltransferase 2 subunit beta", "gene_name": "MAT2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18124-1", "protein_name": "Large ribosomal subunit protein uL30", "gene_name": "RPL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15880-1", "protein_name": "Small ribosomal subunit protein uS5", "gene_name": "RPS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31153-1", "protein_name": "S-adenosylmethionine synthase isoform type-2", "gene_name": "MAT2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62750-1", "protein_name": "Large ribosomal subunit protein uL23", "gene_name": "RPL23A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62280-1", "protein_name": "Small ribosomal subunit protein uS17", "gene_name": "RPS11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62249-1", "protein_name": "Small ribosomal subunit protein uS9", "gene_name": "RPS16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50914-1", "protein_name": "Large ribosomal subunit protein eL14", "gene_name": "RPL14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62906-1", "protein_name": "Large ribosomal subunit protein uL1", "gene_name": "RPL10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23396-1", "protein_name": "Small ribosomal subunit protein uS3", "gene_name": "RPS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23526-1", "protein_name": "Adenosylhomocysteinase", "gene_name": "AHCY", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62841-1", "protein_name": "Small ribosomal subunit protein uS19", "gene_name": "RPS15", "tax_name": "Human" }, { "uniprot_canonical_ac": "C0HME6-1", "protein_name": "RPL36 alternative reading frame protein", "gene_name": "RPL36", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62829-1", "protein_name": "Large ribosomal subunit protein uL14", "gene_name": "RPL23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32969-1", "protein_name": "Large ribosomal subunit protein uL6", "gene_name": "RPL9P7; RPL9P8; RPL9P9; RPL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30050-1", "protein_name": "Large 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"gene_name": "TPMT", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05388-1", "protein_name": "Large ribosomal subunit protein uL10", "gene_name": "RPLP0", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46779-1", "protein_name": "Large ribosomal subunit protein eL28", "gene_name": "RPL28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62857-1", "protein_name": "Small ribosomal subunit protein eS28", "gene_name": "RPS28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15170-1", "protein_name": "Eukaryotic peptide chain release factor GTP-binding subunit ERF3A", "gene_name": "GSPT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62495-1", "protein_name": "Eukaryotic peptide chain release factor subunit 1", "gene_name": "ETF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5N5-1", "protein_name": "Methyltransferase HEMK2", "gene_name": "HEMK2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61313-1", "protein_name": "Large ribosomal subunit protein eL15", "gene_name": "RPL15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62081-1", "protein_name": "Small ribosomal subunit protein eS7", "gene_name": "RPS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71UM5-1", "protein_name": "Ribosomal protein eS27-like", "gene_name": "RPS27L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13798-1", "protein_name": "Acylamino-acid-releasing enzyme", "gene_name": "APEH", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P18621", "url": "https://www.uniprot.org/uniprotkb/P18621" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.18539146", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], 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"protein_name": "Large ribosomal subunit protein eL27", "gene_name": "RPL27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNX3-1", "protein_name": "Ribosomal protein uL24-like", "gene_name": "RPL26L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02543-1", "protein_name": "Large ribosomal subunit protein eL20", "gene_name": "RPL18A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40429-1", "protein_name": "Large ribosomal subunit protein uL13", "gene_name": "RPL13A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63173-1", "protein_name": "Large ribosomal subunit protein eL38", "gene_name": "RPL38", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62910-1", "protein_name": "Large ribosomal subunit protein eL32", "gene_name": "RPL32", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39023-1", "protein_name": "Large ribosomal subunit protein uL3", "gene_name": "RPL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18077-1", "protein_name": "Large ribosomal subunit protein eL33", "gene_name": "RPL35A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61254-1", "protein_name": "Large ribosomal subunit protein uL24", "gene_name": "RPL26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84098-1", "protein_name": "Large ribosomal subunit protein eL19", "gene_name": "RPL19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62888-1", "protein_name": "Large ribosomal subunit protein eL30", "gene_name": "RPL30", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83731-1", "protein_name": "Large ribosomal subunit protein eL24", "gene_name": "RPL24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62899-1", "protein_name": "Large ribosomal subunit protein eL31", "gene_name": "RPL31", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62945-1", "protein_name": "Small ribosomal subunit protein eS32", "gene_name": "RPL41", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61927-1", "protein_name": "Large ribosomal subunit protein eL37", 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"uniprot_canonical_ac": "P62851-1", "protein_name": "Small ribosomal subunit protein eS25", "gene_name": "RPS25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08865-1", "protein_name": "Small ribosomal subunit protein uS2", "gene_name": "RPSA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62847-1", "protein_name": "Small ribosomal subunit protein eS24", "gene_name": "RPS24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62861-1", "protein_name": "Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein", "gene_name": "FAU", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62241-1", "protein_name": "Small ribosomal subunit protein eS8", "gene_name": "RPS8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62277-1", "protein_name": "Small ribosomal subunit protein uS15", "gene_name": "RPS13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39019-1", "protein_name": "Small ribosomal subunit protein eS19", "gene_name": "RPS19", "tax_name": "Human" }, { 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Recognition and elimination of nonsense mRNA.", "journal": "Biochimica et biophysica acta", "date": "2008", "authors": "Muhlemann O, Eberle AB, Stalder L, Zamudio Orozco R", "reference": { "type": "PubMed", "id": "18657639", "url": "https://pubmed.ncbi.nlm.nih.gov/18657639" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P18621-1", "protein_name": "Large ribosomal subunit protein uL22", "gene_name": "RPL17", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H1J1-1", "protein_name": "Regulator of nonsense transcripts 3A", "gene_name": "UPF3A", 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"tax_name": "Human" }, { "uniprot_canonical_ac": "P08865-1", "protein_name": "Small ribosomal subunit protein uS2", "gene_name": "RPSA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62847-1", "protein_name": "Small ribosomal subunit protein eS24", "gene_name": "RPS24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62861-1", "protein_name": "Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein", "gene_name": "FAU", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62241-1", "protein_name": "Small ribosomal subunit protein eS8", "gene_name": "RPS8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62277-1", "protein_name": "Small ribosomal subunit protein uS15", "gene_name": "RPS13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39019-1", "protein_name": "Small ribosomal subunit protein eS19", "gene_name": "RPS19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92540-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG7", "gene_name": "SMG7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPR3-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG5", "gene_name": "SMG5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62269-1", "protein_name": "Small ribosomal subunit protein uS13", "gene_name": "RPS18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02878-1", "protein_name": "Large ribosomal subunit protein eL6", "gene_name": "RPL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62273-1", "protein_name": "Small ribosomal subunit protein uS14", "gene_name": "RPS29", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8ND04-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG8", "gene_name": "SMG8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPI6-1", "protein_name": "mRNA-decapping enzyme 1A", "gene_name": "DCP1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42677-1", "protein_name": "Small ribosomal subunit protein eS27", "gene_name": "RPS27", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38919-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "EIF4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61326-1", "protein_name": "Protein mago nashi homolog", "gene_name": "MAGOH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EH5-1", "protein_name": "Ribosomal protein eL39-like 2", "gene_name": "RPL39L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15287-1", "protein_name": "RNA-binding protein with serine-rich domain 1", "gene_name": "RNPS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0W8-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG9", "gene_name": "SMG9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62263-1", "protein_name": "Small ribosomal subunit protein uS11", "gene_name": "RPS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61513-1", "protein_name": "Large ribosomal subunit protein eL43", "gene_name": "RPL37A", "tax_name": "Human" }, { "uniprot_canonical_ac": 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"Large ribosomal subunit protein uL1", "gene_name": "RPL10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23396-1", "protein_name": "Small ribosomal subunit protein uS3", "gene_name": "RPS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63151-1", "protein_name": "Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform", "gene_name": "PPP2R2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A72-1", "protein_name": "Protein mago nashi homolog 2", "gene_name": "MAGOHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62841-1", "protein_name": "Small ribosomal subunit protein uS19", "gene_name": "RPS15", "tax_name": "Human" }, { "uniprot_canonical_ac": "C0HME6-1", "protein_name": "RPL36 alternative reading frame protein", "gene_name": "RPL36", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62829-1", "protein_name": "Large ribosomal subunit protein uL14", "gene_name": "RPL23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32969-1", "protein_name": "Large ribosomal subunit protein uL6", "gene_name": "RPL9P7; RPL9P8; RPL9P9; RPL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30050-1", "protein_name": "Large ribosomal subunit protein uL11", "gene_name": "RPL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q04637-1", "protein_name": "Eukaryotic translation initiation factor 4 gamma 1", "gene_name": "EIF4G1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62266-1", "protein_name": "Small ribosomal subunit protein uS12", "gene_name": "RPS23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46777-1", "protein_name": "Large ribosomal subunit protein uL18", "gene_name": "RPL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96Q15-1", "protein_name": "Serine/threonine-protein kinase SMG1", "gene_name": "SMG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62753-1", "protein_name": "Small ribosomal subunit protein eS6", "gene_name": "RPS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27635-1", "protein_name": "Large ribosomal subunit protein uL16", "gene_name": "RPL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62913-1", "protein_name": "Large ribosomal subunit protein uL5", "gene_name": "RPL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36578-1", "protein_name": "Large ribosomal subunit protein uL4", "gene_name": "RPL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HAU5-1", "protein_name": "Regulator of nonsense transcripts 2", "gene_name": "UPF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5S9-1", "protein_name": "RNA-binding protein 8A", "gene_name": "RBM8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15234-1", "protein_name": "Protein CASC3", "gene_name": "CASC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05388-1", "protein_name": "Large ribosomal subunit protein uL10", "gene_name": "RPLP0", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46779-1", "protein_name": "Large ribosomal subunit protein eL28", "gene_name": "RPL28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62857-1", "protein_name": "Small ribosomal subunit protein eS28", "gene_name": "RPS28", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPJ4-1", "protein_name": "Proline-rich nuclear receptor coactivator 2", "gene_name": "PNRC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15170-1", "protein_name": "Eukaryotic peptide chain release factor GTP-binding subunit ERF3A", "gene_name": "GSPT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62495-1", "protein_name": "Eukaryotic peptide chain release factor subunit 1", "gene_name": "ETF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61313-1", "protein_name": "Large ribosomal subunit protein eL15", "gene_name": "RPL15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62081-1", "protein_name": "Small ribosomal subunit protein eS7", "gene_name": "RPS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71UM5-1", "protein_name": "Ribosomal protein eS27-like", "gene_name": "RPS27L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30153-1", "protein_name": "Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform", "gene_name": "PPP2R1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67775-1", "protein_name": "Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform", "gene_name": "PPP2CA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92900-1", "protein_name": "Regulator of nonsense transcripts 1", "gene_name": "UPF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P18621", "url": "https://www.uniprot.org/uniprotkb/P18621" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.18657639", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 116 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { 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"total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "SMG6 is the catalytic endonuclease that cleaves mRNAs containing nonsense codons in metazoan.", "journal": "RNA (New York, N.Y.)", "date": "2008", "authors": "Huntzinger E, Kashima I, Fauser M, Sauliere J, Izaurralde E", "reference": { "type": "PubMed", "id": "18974281", "url": "https://pubmed.ncbi.nlm.nih.gov/18974281" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P18621-1", "protein_name": "Large ribosomal subunit protein uL22", "gene_name": "RPL17", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H1J1-1", "protein_name": "Regulator of nonsense transcripts 3A", "gene_name": "UPF3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46776-1", "protein_name": "Large ribosomal subunit protein uL15", "gene_name": "RPL27A", 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{ "uniprot_canonical_ac": "P62917-1", "protein_name": "Large ribosomal subunit protein uL2", "gene_name": "RPL8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25398-1", "protein_name": "Small ribosomal subunit protein eS12", "gene_name": "RPS12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46781-1", "protein_name": "Small ribosomal subunit protein uS4", "gene_name": "RPS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62424-1", "protein_name": "Large ribosomal subunit protein eL8", "gene_name": "RPL7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62701-1", "protein_name": "Small ribosomal subunit protein eS4, X isoform", "gene_name": "RPS4X", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63220-1", "protein_name": "Small ribosomal subunit protein eS21", "gene_name": "RPS21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TD47-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 2", "gene_name": "RPS4Y2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11940-1", "protein_name": "Polyadenylate-binding protein 1", "gene_name": "PABPC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07020-1", "protein_name": "Large ribosomal subunit protein eL18", "gene_name": "RPL18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35268-1", "protein_name": "Large ribosomal subunit protein eL22", "gene_name": "RPL22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83881-1", "protein_name": "Large ribosomal subunit protein eL42", "gene_name": "RPL36A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61353-1", "protein_name": "Large ribosomal subunit protein eL27", "gene_name": "RPL27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNX3-1", "protein_name": "Ribosomal protein uL24-like", "gene_name": "RPL26L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02543-1", "protein_name": "Large ribosomal subunit protein eL20", "gene_name": "RPL18A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40429-1", "protein_name": "Large ribosomal subunit protein uL13", "gene_name": "RPL13A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63173-1", "protein_name": "Large ribosomal subunit protein eL38", "gene_name": "RPL38", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62910-1", "protein_name": "Large ribosomal subunit protein eL32", "gene_name": "RPL32", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39023-1", "protein_name": "Large ribosomal subunit protein uL3", "gene_name": "RPL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18077-1", "protein_name": "Large ribosomal subunit protein eL33", "gene_name": "RPL35A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61254-1", "protein_name": "Large ribosomal subunit protein uL24", "gene_name": "RPL26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84098-1", "protein_name": "Large ribosomal subunit protein eL19", "gene_name": "RPL19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62888-1", "protein_name": "Large ribosomal subunit protein eL30", "gene_name": "RPL30", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83731-1", "protein_name": "Large ribosomal subunit protein eL24", "gene_name": "RPL24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62899-1", "protein_name": "Large ribosomal subunit protein eL31", "gene_name": "RPL31", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62945-1", "protein_name": "Small ribosomal subunit protein eS32", "gene_name": "RPL41", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61927-1", "protein_name": "Large ribosomal subunit protein eL37", "gene_name": "RPL37", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42766-1", "protein_name": "Large ribosomal subunit protein uL29", "gene_name": "RPL35", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05387-1", "protein_name": "Large ribosomal subunit protein P2", "gene_name": "RPLP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92901-1", "protein_name": "Ribosomal protein uL3-like", "gene_name": "RPL3L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46778-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "RPL21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05386-1", "protein_name": "Large ribosomal subunit protein P1", "gene_name": "RPLP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49207-1", "protein_name": "Large ribosomal subunit protein eL34", "gene_name": "RPL34", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62891-1", "protein_name": "Large ribosomal subunit protein eL39", "gene_name": "RPL39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96L21-1", "protein_name": "Ribosomal protein uL16-like", "gene_name": "RPL10L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26373-1", "protein_name": "Large ribosomal subunit protein eL13", "gene_name": "RPL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86US8-1", "protein_name": "Telomerase-binding protein EST1A", "gene_name": "SMG6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYD1-1", "protein_name": "Eukaryotic peptide chain release factor GTP-binding subunit ERF3B", "gene_name": "GSPT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60866-1", "protein_name": "Small ribosomal subunit protein uS10", "gene_name": "RPS20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969Q0-1", "protein_name": "Ribosomal protein eL42-like", "gene_name": "RPL36AL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61247-1", "protein_name": "Small ribosomal subunit protein eS1", "gene_name": "RPS3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62854-1", "protein_name": "Small ribosomal subunit protein eS26", "gene_name": "RPS26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62851-1", "protein_name": "Small ribosomal subunit protein eS25", "gene_name": "RPS25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08865-1", "protein_name": "Small ribosomal subunit protein uS2", "gene_name": "RPSA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62847-1", "protein_name": "Small ribosomal subunit protein eS24", "gene_name": "RPS24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62861-1", "protein_name": "Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein", "gene_name": "FAU", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62241-1", "protein_name": "Small ribosomal subunit protein eS8", "gene_name": "RPS8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62277-1", "protein_name": "Small ribosomal subunit protein uS15", "gene_name": "RPS13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39019-1", "protein_name": "Small ribosomal subunit protein eS19", "gene_name": "RPS19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92540-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG7", "gene_name": "SMG7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPR3-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG5", "gene_name": "SMG5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62269-1", "protein_name": "Small ribosomal subunit protein uS13", "gene_name": "RPS18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02878-1", "protein_name": "Large ribosomal subunit protein eL6", "gene_name": "RPL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62273-1", "protein_name": "Small ribosomal subunit protein uS14", "gene_name": "RPS29", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8ND04-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG8", "gene_name": "SMG8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPI6-1", "protein_name": "mRNA-decapping enzyme 1A", "gene_name": "DCP1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42677-1", "protein_name": "Small ribosomal subunit protein eS27", "gene_name": "RPS27", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38919-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "EIF4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61326-1", "protein_name": "Protein mago nashi homolog", "gene_name": "MAGOH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EH5-1", "protein_name": "Ribosomal protein eL39-like 2", "gene_name": "RPL39L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15287-1", "protein_name": "RNA-binding protein with serine-rich domain 1", "gene_name": "RNPS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0W8-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG9", "gene_name": "SMG9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62263-1", "protein_name": "Small ribosomal subunit protein uS11", "gene_name": "RPS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61513-1", "protein_name": "Large ribosomal subunit protein eL43", "gene_name": "RPL37A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18124-1", "protein_name": "Large ribosomal subunit protein uL30", "gene_name": "RPL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZI7-1", "protein_name": "Regulator of 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"gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23396-1", "protein_name": "Small ribosomal subunit protein uS3", "gene_name": "RPS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63151-1", "protein_name": "Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform", "gene_name": "PPP2R2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A72-1", "protein_name": "Protein mago nashi homolog 2", "gene_name": "MAGOHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62841-1", "protein_name": "Small ribosomal subunit protein uS19", "gene_name": "RPS15", "tax_name": "Human" }, { "uniprot_canonical_ac": "C0HME6-1", "protein_name": "RPL36 alternative reading frame protein", "gene_name": "RPL36", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62829-1", "protein_name": "Large ribosomal subunit protein uL14", "gene_name": "RPL23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32969-1", "protein_name": "Large ribosomal subunit protein uL6", "gene_name": "RPL9P7; RPL9P8; RPL9P9; RPL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30050-1", "protein_name": "Large ribosomal subunit protein uL11", "gene_name": "RPL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q04637-1", "protein_name": "Eukaryotic translation initiation factor 4 gamma 1", "gene_name": "EIF4G1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62266-1", "protein_name": "Small ribosomal subunit protein uS12", "gene_name": "RPS23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46777-1", "protein_name": "Large ribosomal subunit protein uL18", "gene_name": "RPL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96Q15-1", "protein_name": "Serine/threonine-protein kinase SMG1", "gene_name": "SMG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62753-1", "protein_name": "Small ribosomal subunit protein eS6", "gene_name": "RPS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27635-1", "protein_name": "Large ribosomal subunit protein uL16", "gene_name": "RPL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62913-1", "protein_name": "Large ribosomal subunit protein uL5", "gene_name": "RPL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36578-1", "protein_name": "Large ribosomal subunit protein uL4", "gene_name": "RPL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HAU5-1", "protein_name": "Regulator of nonsense transcripts 2", "gene_name": "UPF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5S9-1", "protein_name": "RNA-binding protein 8A", "gene_name": "RBM8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15234-1", "protein_name": "Protein CASC3", "gene_name": "CASC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05388-1", "protein_name": "Large ribosomal subunit protein uL10", "gene_name": "RPLP0", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46779-1", "protein_name": "Large ribosomal subunit protein eL28", "gene_name": "RPL28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62857-1", "protein_name": "Small ribosomal subunit protein eS28", "gene_name": "RPS28", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPJ4-1", "protein_name": "Proline-rich nuclear receptor coactivator 2", "gene_name": "PNRC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15170-1", "protein_name": "Eukaryotic peptide chain release factor GTP-binding subunit ERF3A", "gene_name": "GSPT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62495-1", "protein_name": "Eukaryotic peptide chain release factor subunit 1", "gene_name": "ETF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61313-1", "protein_name": "Large ribosomal subunit protein eL15", "gene_name": "RPL15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62081-1", "protein_name": "Small ribosomal subunit protein eS7", "gene_name": "RPS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71UM5-1", "protein_name": "Ribosomal protein eS27-like", "gene_name": "RPS27L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30153-1", "protein_name": "Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform", "gene_name": "PPP2R1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67775-1", "protein_name": "Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform", "gene_name": "PPP2CA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92900-1", "protein_name": "Regulator of nonsense transcripts 1", "gene_name": "UPF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P18621", "url": "https://www.uniprot.org/uniprotkb/P18621" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 1251, "end_pos": 1251, "sequence_org": "D", "sequence_mut": "A", "comment": "Impaired nonsense-mediated RNA decay.", "evidence": [ { "database": "UniProtKB", "id": "Q86US8", "url": "https://www.uniprot.org/uniprotkb/Q86US8" }, { "database": "PubMed", "id": "19060897", "url": "https://pubmed.ncbi.nlm.nih.gov/19060897" }, { "database": "PubMed", "id": "18974281", "url": "https://pubmed.ncbi.nlm.nih.gov/18974281" } ], "uniprot_canonical_ac": "Q86US8-1" }, { "start_pos": 1251, "end_pos": 1251, "sequence_org": "D", "sequence_mut": "N", "comment": "Loss of endonuclease activity and nonsense-mediated RNA decay; when associated with N-1392.", "evidence": [ { "database": "UniProtKB", "id": "Q86US8", "url": 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"uniprot_canonical_ac": "P62829-1", "protein_name": "Large ribosomal subunit protein uL14", "gene_name": "RPL23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32969-1", "protein_name": "Large ribosomal subunit protein uL6", "gene_name": "RPL9P7; RPL9P8; RPL9P9; RPL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30050-1", "protein_name": "Large ribosomal subunit protein uL11", "gene_name": "RPL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q04637-1", "protein_name": "Eukaryotic translation initiation factor 4 gamma 1", "gene_name": "EIF4G1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62266-1", "protein_name": "Small ribosomal subunit protein uS12", "gene_name": "RPS23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46777-1", "protein_name": "Large ribosomal subunit protein uL18", "gene_name": "RPL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96Q15-1", "protein_name": "Serine/threonine-protein kinase SMG1", "gene_name": "SMG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62753-1", "protein_name": "Small ribosomal subunit protein eS6", "gene_name": "RPS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27635-1", "protein_name": "Large ribosomal subunit protein uL16", "gene_name": "RPL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62913-1", "protein_name": "Large ribosomal subunit protein uL5", "gene_name": "RPL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36578-1", "protein_name": "Large ribosomal subunit protein uL4", "gene_name": "RPL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HAU5-1", "protein_name": "Regulator of nonsense transcripts 2", "gene_name": "UPF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5S9-1", "protein_name": "RNA-binding protein 8A", "gene_name": "RBM8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15234-1", "protein_name": "Protein CASC3", "gene_name": "CASC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05388-1", "protein_name": "Large ribosomal subunit protein uL10", "gene_name": "RPLP0", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46779-1", "protein_name": "Large ribosomal subunit protein eL28", "gene_name": "RPL28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62857-1", "protein_name": "Small ribosomal subunit protein eS28", "gene_name": "RPS28", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPJ4-1", "protein_name": "Proline-rich nuclear receptor coactivator 2", "gene_name": "PNRC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15170-1", "protein_name": "Eukaryotic peptide chain release factor GTP-binding subunit ERF3A", "gene_name": "GSPT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62495-1", "protein_name": "Eukaryotic peptide chain release factor subunit 1", "gene_name": "ETF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61313-1", "protein_name": "Large ribosomal subunit protein eL15", "gene_name": "RPL15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62081-1", "protein_name": "Small ribosomal subunit protein eS7", "gene_name": "RPS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71UM5-1", "protein_name": "Ribosomal protein eS27-like", "gene_name": "RPS27L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30153-1", "protein_name": "Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform", "gene_name": "PPP2R1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67775-1", "protein_name": "Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform", "gene_name": "PPP2CA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92900-1", "protein_name": "Regulator of nonsense transcripts 1", "gene_name": "UPF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P18621", "url": "https://www.uniprot.org/uniprotkb/P18621" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 506, "end_pos": 508, "sequence_org": "GTG", "sequence_mut": "RTE", "comment": "Prevents dephosphorylation and targets the protein to the P-body.", "evidence": [ { "database": "UniProtKB", "id": "Q92900", "url": "https://www.uniprot.org/uniprotkb/Q92900" }, { "database": "PubMed", "id": "19150429", "url": "https://pubmed.ncbi.nlm.nih.gov/19150429" } ], "uniprot_canonical_ac": "Q92900-1" } ], "record_id": "pubmed.19150429", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 116 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Execution of nonsense-mediated mRNA decay: what defines a substrate?", "journal": "Current opinion in cell biology", "date": "2009", "authors": "Rebbapragada I, Lykke-Andersen J", "reference": { "type": "PubMed", "id": "19359157", "url": "https://pubmed.ncbi.nlm.nih.gov/19359157" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P18621-1", "protein_name": "Large ribosomal subunit protein uL22", "gene_name": "RPL17", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H1J1-1", "protein_name": "Regulator of nonsense transcripts 3A", "gene_name": "UPF3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46776-1", "protein_name": "Large ribosomal subunit protein uL15", "gene_name": "RPL27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46782-1", "protein_name": "Small ribosomal subunit protein uS7", "gene_name": "RPS5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47914-1", "protein_name": "Large ribosomal subunit protein eL29", "gene_name": "RPL29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62244-1", "protein_name": "Small ribosomal subunit protein uS8", "gene_name": "RPS15A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22090-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 1", "gene_name": "RPS4Y1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P5R6-1", "protein_name": "Ribosomal protein eL22-like", "gene_name": "RPL22L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08708-1", "protein_name": "Small ribosomal subunit protein eS17", "gene_name": "RPS17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46783-1", "protein_name": "Small ribosomal subunit protein eS10", "gene_name": "RPS10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62917-1", "protein_name": "Large ribosomal subunit protein uL2", "gene_name": "RPL8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25398-1", "protein_name": "Small ribosomal subunit protein eS12", "gene_name": "RPS12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46781-1", "protein_name": "Small ribosomal subunit protein uS4", "gene_name": "RPS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62424-1", "protein_name": "Large ribosomal subunit protein eL8", "gene_name": "RPL7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62701-1", "protein_name": "Small ribosomal subunit protein eS4, X isoform", "gene_name": "RPS4X", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63220-1", "protein_name": "Small ribosomal subunit protein eS21", "gene_name": "RPS21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TD47-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 2", "gene_name": "RPS4Y2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11940-1", "protein_name": "Polyadenylate-binding protein 1", "gene_name": "PABPC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07020-1", "protein_name": "Large ribosomal subunit protein eL18", "gene_name": "RPL18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35268-1", "protein_name": "Large ribosomal subunit protein eL22", "gene_name": "RPL22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83881-1", "protein_name": "Large ribosomal subunit protein eL42", "gene_name": "RPL36A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61353-1", "protein_name": "Large ribosomal subunit protein eL27", "gene_name": "RPL27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNX3-1", "protein_name": "Ribosomal protein uL24-like", "gene_name": "RPL26L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02543-1", "protein_name": "Large ribosomal subunit protein eL20", "gene_name": "RPL18A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40429-1", "protein_name": "Large ribosomal subunit protein uL13", "gene_name": "RPL13A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63173-1", "protein_name": "Large ribosomal subunit protein eL38", "gene_name": "RPL38", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62910-1", "protein_name": "Large ribosomal subunit protein eL32", "gene_name": "RPL32", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39023-1", "protein_name": "Large ribosomal subunit protein uL3", "gene_name": "RPL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18077-1", "protein_name": "Large ribosomal subunit protein eL33", "gene_name": "RPL35A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61254-1", "protein_name": "Large ribosomal subunit protein uL24", "gene_name": "RPL26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84098-1", "protein_name": "Large ribosomal subunit protein eL19", "gene_name": "RPL19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62888-1", "protein_name": "Large ribosomal subunit protein eL30", "gene_name": "RPL30", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83731-1", "protein_name": "Large ribosomal subunit protein eL24", "gene_name": "RPL24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62899-1", "protein_name": "Large ribosomal subunit protein eL31", "gene_name": "RPL31", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62945-1", "protein_name": "Small ribosomal subunit protein eS32", "gene_name": "RPL41", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61927-1", "protein_name": "Large ribosomal subunit protein eL37", "gene_name": "RPL37", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42766-1", "protein_name": "Large ribosomal subunit protein uL29", "gene_name": "RPL35", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05387-1", "protein_name": "Large ribosomal subunit protein P2", "gene_name": "RPLP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92901-1", "protein_name": "Ribosomal protein uL3-like", "gene_name": "RPL3L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46778-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "RPL21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05386-1", "protein_name": "Large ribosomal subunit protein P1", "gene_name": "RPLP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49207-1", "protein_name": "Large ribosomal subunit protein eL34", "gene_name": "RPL34", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62891-1", "protein_name": "Large ribosomal subunit protein eL39", "gene_name": "RPL39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96L21-1", "protein_name": "Ribosomal protein uL16-like", "gene_name": "RPL10L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26373-1", "protein_name": "Large ribosomal subunit protein eL13", "gene_name": "RPL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86US8-1", "protein_name": "Telomerase-binding protein EST1A", "gene_name": "SMG6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYD1-1", "protein_name": "Eukaryotic peptide chain release factor GTP-binding subunit ERF3B", "gene_name": "GSPT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60866-1", "protein_name": "Small ribosomal subunit protein uS10", "gene_name": "RPS20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969Q0-1", "protein_name": "Ribosomal protein eL42-like", "gene_name": "RPL36AL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61247-1", "protein_name": "Small ribosomal subunit protein eS1", "gene_name": "RPS3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62854-1", "protein_name": "Small ribosomal subunit protein eS26", "gene_name": "RPS26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62851-1", "protein_name": "Small ribosomal subunit protein eS25", "gene_name": "RPS25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08865-1", "protein_name": "Small ribosomal subunit protein uS2", "gene_name": "RPSA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62847-1", "protein_name": "Small ribosomal subunit protein eS24", "gene_name": "RPS24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62861-1", "protein_name": "Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein", "gene_name": "FAU", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62241-1", "protein_name": "Small ribosomal subunit protein eS8", "gene_name": "RPS8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62277-1", "protein_name": "Small ribosomal subunit protein uS15", "gene_name": "RPS13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39019-1", "protein_name": "Small ribosomal subunit protein eS19", "gene_name": "RPS19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92540-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG7", "gene_name": "SMG7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPR3-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG5", "gene_name": "SMG5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62269-1", "protein_name": "Small ribosomal subunit protein uS13", "gene_name": "RPS18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02878-1", "protein_name": "Large ribosomal subunit protein eL6", "gene_name": "RPL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62273-1", "protein_name": "Small ribosomal subunit protein uS14", "gene_name": "RPS29", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8ND04-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG8", "gene_name": "SMG8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPI6-1", "protein_name": "mRNA-decapping enzyme 1A", "gene_name": "DCP1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42677-1", "protein_name": "Small ribosomal subunit protein eS27", "gene_name": "RPS27", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38919-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "EIF4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61326-1", "protein_name": "Protein mago nashi homolog", "gene_name": "MAGOH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EH5-1", "protein_name": "Ribosomal protein eL39-like 2", "gene_name": "RPL39L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15287-1", "protein_name": "RNA-binding protein with serine-rich domain 1", "gene_name": "RNPS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0W8-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG9", "gene_name": "SMG9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62263-1", "protein_name": "Small ribosomal subunit protein uS11", "gene_name": "RPS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61513-1", "protein_name": "Large ribosomal subunit protein eL43", "gene_name": "RPL37A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18124-1", "protein_name": "Large ribosomal subunit protein uL30", "gene_name": "RPL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZI7-1", "protein_name": "Regulator of nonsense transcripts 3B", "gene_name": "UPF3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15880-1", "protein_name": "Small ribosomal subunit protein uS5", "gene_name": "RPS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62750-1", "protein_name": "Large ribosomal subunit protein uL23", "gene_name": "RPL23A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62280-1", "protein_name": "Small ribosomal subunit protein uS17", "gene_name": "RPS11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62249-1", "protein_name": "Small ribosomal subunit protein uS9", "gene_name": "RPS16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50914-1", "protein_name": "Large ribosomal subunit protein eL14", "gene_name": "RPL14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62906-1", "protein_name": "Large ribosomal subunit protein uL1", "gene_name": "RPL10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23396-1", "protein_name": "Small ribosomal subunit protein uS3", "gene_name": "RPS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63151-1", "protein_name": "Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform", "gene_name": "PPP2R2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A72-1", "protein_name": "Protein mago nashi homolog 2", "gene_name": "MAGOHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62841-1", "protein_name": "Small ribosomal subunit protein uS19", "gene_name": "RPS15", "tax_name": "Human" }, { "uniprot_canonical_ac": "C0HME6-1", "protein_name": "RPL36 alternative reading frame protein", "gene_name": "RPL36", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62829-1", "protein_name": "Large ribosomal subunit protein uL14", "gene_name": "RPL23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32969-1", "protein_name": "Large ribosomal subunit protein uL6", "gene_name": "RPL9P7; RPL9P8; RPL9P9; RPL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30050-1", "protein_name": "Large ribosomal subunit protein uL11", "gene_name": "RPL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q04637-1", "protein_name": "Eukaryotic translation initiation factor 4 gamma 1", "gene_name": "EIF4G1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62266-1", "protein_name": "Small ribosomal subunit protein uS12", "gene_name": "RPS23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46777-1", "protein_name": "Large ribosomal subunit protein uL18", "gene_name": "RPL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96Q15-1", "protein_name": "Serine/threonine-protein kinase SMG1", "gene_name": "SMG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62753-1", "protein_name": "Small ribosomal subunit protein eS6", "gene_name": "RPS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27635-1", "protein_name": "Large ribosomal subunit protein uL16", "gene_name": "RPL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62913-1", "protein_name": "Large ribosomal subunit protein uL5", "gene_name": "RPL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36578-1", "protein_name": "Large ribosomal subunit protein uL4", "gene_name": "RPL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HAU5-1", "protein_name": "Regulator of nonsense transcripts 2", "gene_name": "UPF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5S9-1", "protein_name": "RNA-binding protein 8A", "gene_name": "RBM8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15234-1", "protein_name": "Protein CASC3", "gene_name": "CASC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05388-1", "protein_name": "Large ribosomal subunit protein uL10", "gene_name": "RPLP0", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46779-1", "protein_name": "Large ribosomal subunit protein eL28", "gene_name": "RPL28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62857-1", "protein_name": "Small ribosomal subunit protein eS28", "gene_name": "RPS28", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPJ4-1", "protein_name": "Proline-rich nuclear receptor coactivator 2", "gene_name": "PNRC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15170-1", "protein_name": "Eukaryotic peptide chain release factor GTP-binding subunit ERF3A", "gene_name": "GSPT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62495-1", "protein_name": "Eukaryotic peptide chain release factor subunit 1", "gene_name": "ETF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61313-1", "protein_name": "Large ribosomal subunit protein eL15", "gene_name": "RPL15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62081-1", "protein_name": "Small ribosomal subunit protein eS7", "gene_name": "RPS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71UM5-1", "protein_name": "Ribosomal protein eS27-like", "gene_name": "RPS27L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30153-1", "protein_name": "Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform", "gene_name": "PPP2R1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67775-1", "protein_name": "Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform", "gene_name": "PPP2CA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92900-1", "protein_name": "Regulator of nonsense transcripts 1", "gene_name": "UPF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P18621", "url": "https://www.uniprot.org/uniprotkb/P18621" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.19359157", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 116 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "SMG-8 and SMG-9, two novel subunits of the SMG-1 complex, regulate remodeling of the mRNA surveillance complex during nonsense-mediated mRNA decay.", "journal": "Genes & development", "date": "2009", "authors": "Yamashita A, Izumi N, Kashima I, Ohnishi T, Saari B, Katsuhata Y, Muramatsu R, Morita T, Iwamatsu A, Hachiya T, Kurata R, Hirano H, Anderson P, Ohno S", "reference": { "type": "PubMed", "id": "19417104", "url": "https://pubmed.ncbi.nlm.nih.gov/19417104" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P18621-1", "protein_name": "Large ribosomal subunit protein uL22", "gene_name": "RPL17", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H1J1-1", "protein_name": "Regulator of nonsense transcripts 3A", "gene_name": "UPF3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46776-1", "protein_name": "Large ribosomal subunit protein uL15", "gene_name": "RPL27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46782-1", "protein_name": "Small ribosomal subunit protein uS7", "gene_name": "RPS5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47914-1", "protein_name": "Large ribosomal subunit protein eL29", "gene_name": "RPL29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62244-1", "protein_name": "Small ribosomal subunit protein uS8", "gene_name": "RPS15A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22090-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 1", "gene_name": "RPS4Y1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P5R6-1", "protein_name": "Ribosomal protein eL22-like", "gene_name": "RPL22L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08708-1", "protein_name": "Small ribosomal subunit protein eS17", "gene_name": "RPS17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46783-1", "protein_name": "Small ribosomal subunit protein eS10", "gene_name": "RPS10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62917-1", "protein_name": "Large ribosomal subunit protein uL2", "gene_name": "RPL8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25398-1", "protein_name": "Small ribosomal subunit protein eS12", "gene_name": "RPS12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46781-1", "protein_name": "Small ribosomal subunit protein uS4", "gene_name": "RPS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62424-1", "protein_name": "Large ribosomal subunit protein eL8", "gene_name": "RPL7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62701-1", "protein_name": "Small ribosomal subunit protein eS4, X isoform", "gene_name": "RPS4X", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63220-1", "protein_name": "Small ribosomal subunit protein eS21", "gene_name": "RPS21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TD47-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 2", "gene_name": "RPS4Y2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11940-1", "protein_name": "Polyadenylate-binding protein 1", "gene_name": "PABPC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07020-1", "protein_name": "Large ribosomal subunit protein eL18", "gene_name": "RPL18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35268-1", "protein_name": "Large ribosomal subunit protein eL22", "gene_name": "RPL22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83881-1", "protein_name": "Large ribosomal subunit protein eL42", "gene_name": "RPL36A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61353-1", "protein_name": "Large ribosomal subunit protein eL27", "gene_name": "RPL27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNX3-1", "protein_name": "Ribosomal protein uL24-like", "gene_name": "RPL26L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02543-1", "protein_name": "Large ribosomal subunit protein eL20", "gene_name": "RPL18A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40429-1", "protein_name": "Large ribosomal subunit protein uL13", "gene_name": "RPL13A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63173-1", "protein_name": "Large ribosomal subunit protein eL38", "gene_name": "RPL38", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62910-1", "protein_name": "Large ribosomal subunit protein eL32", "gene_name": "RPL32", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39023-1", "protein_name": "Large ribosomal subunit protein uL3", "gene_name": "RPL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18077-1", "protein_name": "Large ribosomal subunit protein eL33", "gene_name": "RPL35A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61254-1", "protein_name": "Large ribosomal subunit protein uL24", "gene_name": "RPL26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84098-1", "protein_name": "Large ribosomal subunit protein eL19", "gene_name": "RPL19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62888-1", "protein_name": "Large ribosomal subunit protein eL30", "gene_name": "RPL30", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83731-1", "protein_name": "Large ribosomal subunit protein eL24", "gene_name": "RPL24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62899-1", "protein_name": "Large ribosomal subunit protein eL31", "gene_name": "RPL31", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62945-1", "protein_name": "Small ribosomal subunit protein eS32", "gene_name": "RPL41", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61927-1", "protein_name": "Large ribosomal subunit protein eL37", "gene_name": "RPL37", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42766-1", "protein_name": "Large ribosomal subunit protein uL29", "gene_name": "RPL35", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05387-1", "protein_name": "Large ribosomal subunit protein P2", "gene_name": "RPLP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92901-1", "protein_name": "Ribosomal protein uL3-like", "gene_name": "RPL3L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46778-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "RPL21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05386-1", "protein_name": "Large ribosomal subunit protein P1", "gene_name": "RPLP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49207-1", "protein_name": "Large ribosomal subunit protein eL34", "gene_name": "RPL34", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62891-1", "protein_name": "Large ribosomal subunit protein eL39", "gene_name": "RPL39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96L21-1", "protein_name": "Ribosomal protein uL16-like", "gene_name": "RPL10L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26373-1", "protein_name": "Large ribosomal subunit protein eL13", "gene_name": "RPL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86US8-1", "protein_name": "Telomerase-binding protein EST1A", "gene_name": "SMG6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYD1-1", "protein_name": "Eukaryotic peptide chain release factor GTP-binding subunit ERF3B", "gene_name": "GSPT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60866-1", "protein_name": "Small ribosomal subunit protein uS10", "gene_name": "RPS20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969Q0-1", "protein_name": "Ribosomal protein eL42-like", "gene_name": "RPL36AL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61247-1", "protein_name": "Small ribosomal subunit protein eS1", "gene_name": "RPS3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62854-1", "protein_name": "Small ribosomal subunit protein eS26", "gene_name": "RPS26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62851-1", "protein_name": "Small ribosomal subunit protein eS25", "gene_name": "RPS25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08865-1", "protein_name": "Small ribosomal subunit protein uS2", "gene_name": "RPSA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62847-1", "protein_name": "Small ribosomal subunit protein eS24", "gene_name": "RPS24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62861-1", "protein_name": "Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein", "gene_name": "FAU", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62241-1", "protein_name": "Small ribosomal subunit protein eS8", "gene_name": "RPS8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62277-1", "protein_name": "Small ribosomal subunit protein uS15", "gene_name": "RPS13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39019-1", "protein_name": "Small ribosomal subunit protein eS19", "gene_name": "RPS19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92540-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG7", "gene_name": "SMG7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPR3-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG5", "gene_name": "SMG5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62269-1", "protein_name": "Small ribosomal subunit protein uS13", "gene_name": "RPS18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02878-1", "protein_name": "Large ribosomal subunit protein eL6", "gene_name": "RPL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62273-1", "protein_name": "Small ribosomal subunit protein uS14", "gene_name": "RPS29", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8ND04-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG8", "gene_name": "SMG8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPI6-1", "protein_name": "mRNA-decapping enzyme 1A", "gene_name": "DCP1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42677-1", "protein_name": "Small ribosomal subunit protein eS27", "gene_name": "RPS27", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38919-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "EIF4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61326-1", "protein_name": "Protein mago nashi homolog", "gene_name": "MAGOH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EH5-1", "protein_name": "Ribosomal protein eL39-like 2", "gene_name": "RPL39L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15287-1", "protein_name": "RNA-binding protein with serine-rich domain 1", "gene_name": "RNPS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0W8-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG9", "gene_name": "SMG9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62263-1", "protein_name": "Small ribosomal subunit protein uS11", "gene_name": "RPS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61513-1", "protein_name": "Large ribosomal subunit protein eL43", "gene_name": "RPL37A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18124-1", "protein_name": "Large ribosomal subunit protein uL30", "gene_name": "RPL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZI7-1", "protein_name": "Regulator of nonsense transcripts 3B", "gene_name": "UPF3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15880-1", "protein_name": "Small ribosomal subunit protein uS5", "gene_name": "RPS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62750-1", "protein_name": "Large ribosomal subunit protein uL23", "gene_name": "RPL23A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62280-1", "protein_name": "Small ribosomal subunit protein uS17", "gene_name": "RPS11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62249-1", "protein_name": "Small ribosomal subunit protein uS9", "gene_name": "RPS16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50914-1", "protein_name": "Large ribosomal subunit protein eL14", "gene_name": "RPL14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62906-1", "protein_name": "Large ribosomal subunit protein uL1", "gene_name": "RPL10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23396-1", "protein_name": "Small ribosomal subunit protein uS3", "gene_name": "RPS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63151-1", "protein_name": "Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform", "gene_name": "PPP2R2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A72-1", "protein_name": "Protein mago nashi homolog 2", "gene_name": "MAGOHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62841-1", "protein_name": "Small ribosomal subunit protein uS19", "gene_name": "RPS15", "tax_name": "Human" }, { "uniprot_canonical_ac": "C0HME6-1", "protein_name": "RPL36 alternative reading frame protein", "gene_name": "RPL36", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62829-1", "protein_name": "Large ribosomal subunit protein uL14", "gene_name": "RPL23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32969-1", "protein_name": "Large ribosomal subunit protein uL6", "gene_name": "RPL9P7; RPL9P8; RPL9P9; RPL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30050-1", "protein_name": "Large ribosomal subunit protein uL11", "gene_name": "RPL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q04637-1", "protein_name": "Eukaryotic translation initiation factor 4 gamma 1", "gene_name": "EIF4G1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62266-1", "protein_name": "Small ribosomal subunit protein uS12", "gene_name": "RPS23", 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"uniprot_canonical_ac": "Q9Y5S9-1", "protein_name": "RNA-binding protein 8A", "gene_name": "RBM8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15234-1", "protein_name": "Protein CASC3", "gene_name": "CASC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05388-1", "protein_name": "Large ribosomal subunit protein uL10", "gene_name": "RPLP0", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46779-1", "protein_name": "Large ribosomal subunit protein eL28", "gene_name": "RPL28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62857-1", "protein_name": "Small ribosomal subunit protein eS28", "gene_name": "RPS28", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPJ4-1", "protein_name": "Proline-rich nuclear receptor coactivator 2", "gene_name": "PNRC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13639-1", "protein_name": "Elongation factor 2", "gene_name": "EEF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15170-1", "protein_name": "Eukaryotic peptide chain release factor GTP-binding subunit ERF3A", "gene_name": "GSPT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62495-1", "protein_name": "Eukaryotic peptide chain release factor subunit 1", "gene_name": "ETF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61313-1", "protein_name": "Large ribosomal subunit protein eL15", "gene_name": "RPL15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62081-1", "protein_name": "Small ribosomal subunit protein eS7", "gene_name": "RPS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71UM5-1", "protein_name": "Ribosomal protein eS27-like", "gene_name": "RPS27L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30153-1", "protein_name": "Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform", "gene_name": "PPP2R1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67775-1", "protein_name": "Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform", "gene_name": "PPP2CA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92900-1", "protein_name": "Regulator of nonsense transcripts 1", "gene_name": "UPF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P18621", "url": "https://www.uniprot.org/uniprotkb/P18621" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 126, "end_pos": 126, "sequence_org": "C", "sequence_mut": "S", "comment": "Abolishes ability to interact with UPF2/RENT2 and copurifies with greater amounts of SMG1, SMG8 and SMG9. Increases interaction with DHX34. No effect on interaction with SMG1-DHX34-UPF1 complex.", "evidence": [ { "database": "UniProtKB", "id": "Q92900", "url": "https://www.uniprot.org/uniprotkb/Q92900" }, { "database": "PubMed", "id": "19417104", "url": "https://pubmed.ncbi.nlm.nih.gov/19417104" }, { "database": "PubMed", "id": "16452507", "url": "https://pubmed.ncbi.nlm.nih.gov/16452507" }, { "database": "PubMed", "id": "26841701", "url": "https://pubmed.ncbi.nlm.nih.gov/26841701" }, { "database": "PubMed", "id": "25220460", "url": "https://pubmed.ncbi.nlm.nih.gov/25220460" } ], "uniprot_canonical_ac": "Q92900-1" } ], "record_id": "pubmed.19417104", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 117 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 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"uniprot_canonical_ac": "Q8TD47-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 2", "gene_name": "RPS4Y2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11940-1", "protein_name": "Polyadenylate-binding protein 1", "gene_name": "PABPC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07020-1", "protein_name": "Large ribosomal subunit protein eL18", "gene_name": "RPL18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35268-1", "protein_name": "Large ribosomal subunit protein eL22", "gene_name": "RPL22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83881-1", "protein_name": "Large ribosomal subunit protein eL42", "gene_name": "RPL36A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61353-1", "protein_name": "Large ribosomal subunit protein eL27", "gene_name": "RPL27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNX3-1", "protein_name": "Ribosomal protein uL24-like", "gene_name": "RPL26L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02543-1", "protein_name": "Large ribosomal subunit protein eL20", "gene_name": "RPL18A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40429-1", "protein_name": "Large ribosomal subunit protein uL13", "gene_name": "RPL13A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63173-1", "protein_name": "Large ribosomal subunit protein eL38", "gene_name": "RPL38", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62910-1", "protein_name": "Large ribosomal subunit protein eL32", "gene_name": "RPL32", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39023-1", "protein_name": "Large ribosomal subunit protein uL3", "gene_name": "RPL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18077-1", "protein_name": "Large ribosomal subunit protein eL33", "gene_name": "RPL35A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61254-1", "protein_name": "Large ribosomal subunit protein uL24", "gene_name": "RPL26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84098-1", "protein_name": "Large ribosomal subunit protein eL19", "gene_name": "RPL19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62888-1", "protein_name": "Large ribosomal subunit protein eL30", "gene_name": "RPL30", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83731-1", "protein_name": "Large ribosomal subunit protein eL24", "gene_name": "RPL24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62899-1", "protein_name": "Large ribosomal subunit protein eL31", "gene_name": "RPL31", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62945-1", "protein_name": "Small ribosomal subunit protein eS32", "gene_name": "RPL41", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61927-1", "protein_name": "Large ribosomal subunit protein eL37", "gene_name": "RPL37", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42766-1", "protein_name": "Large ribosomal subunit protein uL29", "gene_name": "RPL35", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05387-1", "protein_name": "Large ribosomal subunit protein P2", "gene_name": "RPLP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92901-1", "protein_name": "Ribosomal protein uL3-like", "gene_name": "RPL3L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46778-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "RPL21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05386-1", "protein_name": "Large ribosomal subunit protein P1", "gene_name": "RPLP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49207-1", "protein_name": "Large ribosomal subunit protein eL34", "gene_name": "RPL34", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62891-1", "protein_name": "Large ribosomal subunit protein eL39", "gene_name": "RPL39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96L21-1", "protein_name": "Ribosomal protein uL16-like", "gene_name": "RPL10L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26373-1", "protein_name": "Large ribosomal subunit protein eL13", "gene_name": "RPL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86US8-1", "protein_name": "Telomerase-binding protein EST1A", "gene_name": "SMG6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYD1-1", "protein_name": "Eukaryotic peptide chain release factor GTP-binding subunit ERF3B", "gene_name": "GSPT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60866-1", "protein_name": "Small ribosomal subunit protein uS10", "gene_name": "RPS20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969Q0-1", "protein_name": "Ribosomal protein eL42-like", "gene_name": "RPL36AL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61247-1", "protein_name": "Small ribosomal subunit protein eS1", "gene_name": "RPS3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62854-1", "protein_name": "Small ribosomal subunit protein eS26", "gene_name": "RPS26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62851-1", "protein_name": "Small ribosomal subunit protein eS25", "gene_name": "RPS25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08865-1", "protein_name": "Small ribosomal subunit protein uS2", "gene_name": "RPSA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62847-1", "protein_name": "Small ribosomal subunit protein eS24", "gene_name": "RPS24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62861-1", "protein_name": "Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein", "gene_name": "FAU", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62241-1", "protein_name": "Small ribosomal subunit protein eS8", "gene_name": "RPS8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62277-1", "protein_name": "Small ribosomal subunit protein uS15", "gene_name": "RPS13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39019-1", "protein_name": "Small ribosomal subunit protein eS19", "gene_name": "RPS19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92540-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG7", "gene_name": "SMG7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPR3-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG5", "gene_name": "SMG5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62269-1", "protein_name": "Small ribosomal subunit protein uS13", "gene_name": "RPS18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02878-1", "protein_name": "Large ribosomal subunit protein eL6", "gene_name": "RPL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62273-1", "protein_name": "Small ribosomal subunit protein uS14", "gene_name": "RPS29", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8ND04-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG8", "gene_name": "SMG8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPI6-1", "protein_name": "mRNA-decapping enzyme 1A", "gene_name": "DCP1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42677-1", "protein_name": "Small ribosomal subunit protein eS27", "gene_name": "RPS27", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38919-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "EIF4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61326-1", "protein_name": "Protein mago nashi homolog", "gene_name": "MAGOH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EH5-1", "protein_name": "Ribosomal protein eL39-like 2", "gene_name": "RPL39L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15287-1", "protein_name": "RNA-binding protein with serine-rich domain 1", "gene_name": "RNPS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0W8-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG9", "gene_name": "SMG9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62263-1", "protein_name": "Small ribosomal subunit protein uS11", "gene_name": "RPS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61513-1", "protein_name": "Large ribosomal subunit protein eL43", "gene_name": "RPL37A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18124-1", "protein_name": "Large ribosomal subunit protein uL30", "gene_name": "RPL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZI7-1", "protein_name": "Regulator of nonsense transcripts 3B", "gene_name": "UPF3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15880-1", "protein_name": "Small ribosomal subunit protein uS5", "gene_name": "RPS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62750-1", "protein_name": "Large ribosomal subunit protein uL23", "gene_name": "RPL23A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62280-1", "protein_name": "Small ribosomal subunit protein uS17", "gene_name": "RPS11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62249-1", "protein_name": "Small ribosomal subunit protein uS9", "gene_name": "RPS16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50914-1", "protein_name": "Large ribosomal subunit protein eL14", "gene_name": "RPL14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62906-1", "protein_name": "Large ribosomal subunit protein uL1", "gene_name": "RPL10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23396-1", "protein_name": "Small ribosomal subunit protein uS3", "gene_name": "RPS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63151-1", "protein_name": "Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform", "gene_name": "PPP2R2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A72-1", "protein_name": "Protein mago nashi homolog 2", "gene_name": "MAGOHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62841-1", "protein_name": "Small ribosomal subunit protein uS19", "gene_name": "RPS15", "tax_name": "Human" }, { "uniprot_canonical_ac": "C0HME6-1", "protein_name": "RPL36 alternative reading frame protein", "gene_name": "RPL36", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62829-1", "protein_name": "Large ribosomal subunit protein uL14", "gene_name": "RPL23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32969-1", "protein_name": "Large ribosomal subunit protein uL6", "gene_name": "RPL9P7; RPL9P8; RPL9P9; RPL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30050-1", "protein_name": "Large ribosomal subunit protein uL11", "gene_name": "RPL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q04637-1", "protein_name": "Eukaryotic translation initiation factor 4 gamma 1", "gene_name": "EIF4G1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62266-1", "protein_name": "Small ribosomal subunit protein uS12", "gene_name": "RPS23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46777-1", "protein_name": "Large ribosomal subunit protein uL18", "gene_name": "RPL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96Q15-1", "protein_name": "Serine/threonine-protein kinase SMG1", "gene_name": "SMG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62753-1", "protein_name": "Small ribosomal subunit protein eS6", "gene_name": "RPS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27635-1", "protein_name": "Large ribosomal subunit protein uL16", "gene_name": "RPL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62913-1", "protein_name": "Large ribosomal subunit protein uL5", "gene_name": "RPL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36578-1", "protein_name": "Large ribosomal subunit protein uL4", "gene_name": "RPL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HAU5-1", "protein_name": "Regulator of nonsense transcripts 2", "gene_name": "UPF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5S9-1", "protein_name": "RNA-binding protein 8A", "gene_name": "RBM8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15234-1", "protein_name": "Protein CASC3", "gene_name": "CASC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05388-1", "protein_name": "Large ribosomal subunit protein uL10", "gene_name": "RPLP0", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46779-1", "protein_name": "Large ribosomal subunit protein eL28", "gene_name": "RPL28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62857-1", "protein_name": "Small ribosomal subunit protein eS28", "gene_name": "RPS28", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPJ4-1", "protein_name": "Proline-rich nuclear receptor coactivator 2", "gene_name": "PNRC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15170-1", "protein_name": "Eukaryotic peptide chain release factor GTP-binding subunit ERF3A", "gene_name": "GSPT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62495-1", "protein_name": "Eukaryotic peptide chain release factor subunit 1", "gene_name": "ETF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61313-1", "protein_name": "Large ribosomal subunit protein eL15", "gene_name": "RPL15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62081-1", "protein_name": "Small ribosomal subunit protein eS7", "gene_name": "RPS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71UM5-1", "protein_name": "Ribosomal protein eS27-like", "gene_name": "RPS27L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30153-1", "protein_name": "Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform", "gene_name": "PPP2R1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67775-1", "protein_name": "Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform", "gene_name": "PPP2CA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92900-1", "protein_name": "Regulator of nonsense transcripts 1", "gene_name": "UPF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P18621", "url": "https://www.uniprot.org/uniprotkb/P18621" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.19478851", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 116 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A UPF3-mediated regulatory switch that maintains RNA surveillance.", "journal": "Nature structural & molecular biology", "date": "2009", "authors": "Chan WK, Bhalla AD, Le Hir H, Nguyen LS, Huang L, Gecz J, Wilkinson MF", "reference": { "type": "PubMed", "id": "19503078", "url": "https://pubmed.ncbi.nlm.nih.gov/19503078" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P18621-1", "protein_name": "Large ribosomal subunit protein uL22", "gene_name": "RPL17", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H1J1-1", "protein_name": "Regulator of nonsense transcripts 3A", "gene_name": "UPF3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46776-1", "protein_name": "Large ribosomal subunit protein uL15", "gene_name": "RPL27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46782-1", "protein_name": "Small ribosomal subunit protein uS7", "gene_name": "RPS5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47914-1", "protein_name": "Large ribosomal subunit protein eL29", "gene_name": "RPL29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62244-1", "protein_name": "Small ribosomal subunit protein uS8", "gene_name": "RPS15A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22090-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 1", "gene_name": "RPS4Y1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P5R6-1", "protein_name": "Ribosomal protein eL22-like", "gene_name": "RPL22L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08708-1", "protein_name": "Small ribosomal subunit protein eS17", "gene_name": "RPS17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46783-1", "protein_name": "Small ribosomal subunit protein eS10", "gene_name": "RPS10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62917-1", "protein_name": "Large ribosomal subunit protein uL2", "gene_name": "RPL8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25398-1", "protein_name": "Small ribosomal subunit protein eS12", "gene_name": "RPS12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46781-1", "protein_name": "Small ribosomal subunit protein uS4", "gene_name": "RPS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62424-1", "protein_name": "Large ribosomal subunit protein eL8", "gene_name": "RPL7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62701-1", "protein_name": "Small ribosomal subunit protein eS4, X isoform", "gene_name": "RPS4X", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63220-1", "protein_name": "Small ribosomal subunit protein eS21", "gene_name": "RPS21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TD47-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 2", "gene_name": "RPS4Y2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11940-1", "protein_name": "Polyadenylate-binding protein 1", "gene_name": "PABPC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07020-1", "protein_name": "Large ribosomal subunit protein eL18", "gene_name": "RPL18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35268-1", "protein_name": "Large ribosomal subunit protein eL22", "gene_name": "RPL22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83881-1", "protein_name": "Large ribosomal subunit protein eL42", "gene_name": "RPL36A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61353-1", "protein_name": "Large ribosomal subunit protein eL27", "gene_name": "RPL27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNX3-1", "protein_name": "Ribosomal protein uL24-like", "gene_name": "RPL26L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02543-1", "protein_name": "Large ribosomal subunit protein eL20", "gene_name": "RPL18A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40429-1", "protein_name": "Large ribosomal subunit protein uL13", "gene_name": "RPL13A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63173-1", "protein_name": "Large ribosomal subunit protein eL38", "gene_name": "RPL38", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62910-1", "protein_name": "Large ribosomal subunit protein eL32", "gene_name": "RPL32", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39023-1", "protein_name": "Large ribosomal subunit protein uL3", "gene_name": "RPL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18077-1", "protein_name": "Large ribosomal subunit protein eL33", "gene_name": "RPL35A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61254-1", "protein_name": "Large ribosomal subunit protein uL24", "gene_name": "RPL26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84098-1", "protein_name": "Large ribosomal subunit protein eL19", "gene_name": "RPL19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62888-1", "protein_name": "Large ribosomal subunit protein eL30", "gene_name": "RPL30", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83731-1", "protein_name": "Large ribosomal subunit protein eL24", "gene_name": "RPL24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62899-1", "protein_name": "Large ribosomal subunit protein eL31", "gene_name": "RPL31", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62945-1", "protein_name": "Small ribosomal subunit protein eS32", "gene_name": "RPL41", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61927-1", "protein_name": "Large ribosomal subunit protein eL37", "gene_name": "RPL37", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42766-1", "protein_name": "Large ribosomal subunit protein uL29", "gene_name": "RPL35", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05387-1", "protein_name": "Large ribosomal subunit protein P2", "gene_name": "RPLP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92901-1", "protein_name": "Ribosomal protein uL3-like", "gene_name": "RPL3L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46778-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "RPL21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05386-1", "protein_name": "Large ribosomal subunit protein P1", "gene_name": "RPLP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49207-1", "protein_name": "Large ribosomal subunit protein eL34", "gene_name": "RPL34", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62891-1", "protein_name": "Large ribosomal subunit protein eL39", "gene_name": "RPL39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96L21-1", "protein_name": "Ribosomal protein uL16-like", "gene_name": "RPL10L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26373-1", "protein_name": "Large ribosomal subunit protein eL13", "gene_name": "RPL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86US8-1", "protein_name": "Telomerase-binding protein EST1A", "gene_name": "SMG6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYD1-1", "protein_name": "Eukaryotic peptide chain release factor GTP-binding subunit ERF3B", "gene_name": "GSPT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60866-1", "protein_name": "Small ribosomal subunit protein uS10", "gene_name": "RPS20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969Q0-1", "protein_name": "Ribosomal protein eL42-like", "gene_name": "RPL36AL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61247-1", "protein_name": "Small ribosomal subunit protein eS1", "gene_name": "RPS3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62854-1", "protein_name": "Small ribosomal subunit protein eS26", "gene_name": "RPS26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62851-1", "protein_name": "Small ribosomal subunit protein eS25", "gene_name": "RPS25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08865-1", "protein_name": "Small ribosomal subunit protein uS2", "gene_name": "RPSA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62847-1", "protein_name": "Small ribosomal subunit protein eS24", "gene_name": "RPS24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62861-1", "protein_name": "Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein", "gene_name": "FAU", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62241-1", "protein_name": "Small ribosomal subunit protein eS8", "gene_name": "RPS8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62277-1", "protein_name": "Small ribosomal subunit protein uS15", "gene_name": "RPS13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39019-1", "protein_name": "Small ribosomal subunit protein eS19", "gene_name": "RPS19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92540-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG7", "gene_name": "SMG7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPR3-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG5", "gene_name": "SMG5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62269-1", "protein_name": "Small ribosomal subunit protein uS13", "gene_name": "RPS18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02878-1", "protein_name": "Large ribosomal subunit protein eL6", "gene_name": "RPL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62273-1", "protein_name": "Small ribosomal subunit protein uS14", "gene_name": "RPS29", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8ND04-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG8", "gene_name": "SMG8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPI6-1", "protein_name": "mRNA-decapping enzyme 1A", "gene_name": "DCP1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42677-1", "protein_name": "Small ribosomal subunit protein eS27", "gene_name": "RPS27", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38919-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "EIF4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61326-1", "protein_name": "Protein mago nashi homolog", "gene_name": "MAGOH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EH5-1", "protein_name": "Ribosomal protein eL39-like 2", "gene_name": "RPL39L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15287-1", "protein_name": "RNA-binding protein with serine-rich domain 1", "gene_name": "RNPS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0W8-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG9", "gene_name": "SMG9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62263-1", "protein_name": "Small ribosomal subunit protein uS11", "gene_name": "RPS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61513-1", "protein_name": "Large ribosomal subunit protein eL43", "gene_name": "RPL37A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18124-1", "protein_name": "Large ribosomal subunit protein uL30", "gene_name": "RPL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZI7-1", "protein_name": "Regulator of nonsense transcripts 3B", "gene_name": "UPF3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15880-1", "protein_name": "Small ribosomal subunit protein uS5", "gene_name": "RPS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62750-1", "protein_name": "Large ribosomal subunit protein uL23", "gene_name": "RPL23A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62280-1", "protein_name": "Small ribosomal subunit protein uS17", "gene_name": "RPS11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62249-1", "protein_name": "Small ribosomal subunit protein uS9", "gene_name": "RPS16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50914-1", "protein_name": "Large ribosomal subunit protein eL14", "gene_name": "RPL14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62906-1", "protein_name": "Large ribosomal subunit protein uL1", "gene_name": "RPL10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23396-1", "protein_name": "Small ribosomal subunit protein uS3", "gene_name": "RPS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63151-1", "protein_name": "Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform", "gene_name": "PPP2R2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A72-1", "protein_name": "Protein mago nashi homolog 2", "gene_name": "MAGOHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62841-1", "protein_name": "Small ribosomal subunit protein uS19", "gene_name": "RPS15", "tax_name": "Human" }, { "uniprot_canonical_ac": "C0HME6-1", "protein_name": "RPL36 alternative reading frame protein", "gene_name": "RPL36", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62829-1", "protein_name": "Large ribosomal subunit protein uL14", "gene_name": "RPL23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32969-1", "protein_name": "Large ribosomal subunit protein uL6", "gene_name": "RPL9P7; RPL9P8; RPL9P9; RPL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30050-1", "protein_name": "Large ribosomal subunit protein uL11", "gene_name": "RPL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q04637-1", "protein_name": "Eukaryotic translation initiation factor 4 gamma 1", "gene_name": "EIF4G1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62266-1", "protein_name": "Small ribosomal subunit protein uS12", "gene_name": "RPS23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46777-1", "protein_name": "Large ribosomal subunit protein uL18", "gene_name": "RPL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96Q15-1", "protein_name": "Serine/threonine-protein kinase SMG1", "gene_name": "SMG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62753-1", "protein_name": "Small ribosomal subunit protein eS6", "gene_name": "RPS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27635-1", "protein_name": "Large ribosomal subunit protein uL16", "gene_name": "RPL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62913-1", "protein_name": "Large ribosomal subunit protein uL5", "gene_name": "RPL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36578-1", "protein_name": "Large ribosomal subunit protein uL4", "gene_name": "RPL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HAU5-1", "protein_name": "Regulator of nonsense transcripts 2", "gene_name": "UPF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5S9-1", "protein_name": "RNA-binding protein 8A", "gene_name": "RBM8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15234-1", "protein_name": "Protein CASC3", "gene_name": "CASC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05388-1", "protein_name": "Large ribosomal subunit protein uL10", "gene_name": "RPLP0", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46779-1", "protein_name": "Large ribosomal subunit protein eL28", "gene_name": "RPL28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62857-1", "protein_name": "Small ribosomal subunit protein eS28", "gene_name": "RPS28", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPJ4-1", "protein_name": "Proline-rich nuclear receptor coactivator 2", "gene_name": "PNRC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15170-1", "protein_name": "Eukaryotic peptide chain release factor GTP-binding subunit ERF3A", "gene_name": "GSPT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62495-1", "protein_name": "Eukaryotic peptide chain release factor subunit 1", "gene_name": "ETF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61313-1", "protein_name": "Large ribosomal subunit protein eL15", "gene_name": "RPL15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62081-1", "protein_name": "Small ribosomal subunit protein eS7", "gene_name": "RPS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71UM5-1", "protein_name": "Ribosomal protein eS27-like", "gene_name": "RPS27L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30153-1", "protein_name": "Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform", "gene_name": "PPP2R1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67775-1", "protein_name": "Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform", "gene_name": "PPP2CA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92900-1", "protein_name": "Regulator of nonsense transcripts 1", "gene_name": "UPF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P18621", "url": "https://www.uniprot.org/uniprotkb/P18621" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.19503078", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 116 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Unusual bipartite mode of interaction between the nonsense-mediated decay factors, UPF1 and UPF2.", "journal": "The EMBO journal", "date": "2009", "authors": "Clerici M, Mourao A, Gutsche I, Gehring NH, Hentze MW, Kulozik A, Kadlec J, Sattler M, Cusack S", "reference": { "type": "PubMed", "id": "19556969", "url": "https://pubmed.ncbi.nlm.nih.gov/19556969" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P18621-1", "protein_name": "Large ribosomal subunit protein uL22", "gene_name": "RPL17", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H1J1-1", "protein_name": "Regulator of nonsense transcripts 3A", "gene_name": "UPF3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46776-1", "protein_name": "Large ribosomal subunit protein uL15", "gene_name": "RPL27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46782-1", "protein_name": "Small ribosomal subunit protein uS7", "gene_name": "RPS5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47914-1", "protein_name": "Large ribosomal subunit protein eL29", "gene_name": "RPL29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62244-1", "protein_name": "Small ribosomal subunit protein uS8", "gene_name": "RPS15A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22090-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 1", "gene_name": "RPS4Y1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P5R6-1", "protein_name": "Ribosomal protein eL22-like", "gene_name": "RPL22L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08708-1", "protein_name": "Small ribosomal subunit protein eS17", "gene_name": "RPS17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46783-1", "protein_name": "Small ribosomal subunit protein eS10", "gene_name": "RPS10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62917-1", "protein_name": "Large ribosomal subunit protein uL2", "gene_name": "RPL8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25398-1", "protein_name": "Small ribosomal subunit protein eS12", "gene_name": "RPS12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46781-1", "protein_name": "Small ribosomal subunit protein uS4", "gene_name": "RPS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62424-1", "protein_name": "Large ribosomal subunit protein eL8", "gene_name": "RPL7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62701-1", "protein_name": "Small ribosomal subunit protein eS4, X isoform", "gene_name": "RPS4X", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63220-1", "protein_name": "Small ribosomal subunit protein eS21", "gene_name": "RPS21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TD47-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 2", "gene_name": "RPS4Y2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11940-1", "protein_name": "Polyadenylate-binding protein 1", "gene_name": "PABPC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07020-1", "protein_name": "Large ribosomal subunit protein eL18", "gene_name": "RPL18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35268-1", "protein_name": "Large ribosomal subunit protein eL22", "gene_name": "RPL22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83881-1", "protein_name": "Large ribosomal subunit protein eL42", "gene_name": "RPL36A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61353-1", "protein_name": "Large ribosomal subunit protein eL27", "gene_name": "RPL27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNX3-1", "protein_name": "Ribosomal protein uL24-like", "gene_name": "RPL26L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02543-1", "protein_name": "Large ribosomal subunit protein eL20", "gene_name": "RPL18A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40429-1", "protein_name": "Large ribosomal subunit protein uL13", "gene_name": "RPL13A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63173-1", "protein_name": "Large ribosomal subunit protein eL38", "gene_name": "RPL38", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62910-1", "protein_name": "Large ribosomal subunit protein eL32", "gene_name": "RPL32", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39023-1", "protein_name": "Large ribosomal subunit protein uL3", "gene_name": "RPL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18077-1", "protein_name": "Large ribosomal subunit protein eL33", "gene_name": "RPL35A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61254-1", "protein_name": "Large ribosomal subunit protein uL24", "gene_name": "RPL26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84098-1", "protein_name": "Large ribosomal subunit protein eL19", "gene_name": "RPL19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62888-1", "protein_name": "Large ribosomal subunit protein eL30", "gene_name": "RPL30", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83731-1", "protein_name": "Large ribosomal subunit protein eL24", "gene_name": "RPL24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62899-1", "protein_name": "Large ribosomal subunit protein eL31", "gene_name": "RPL31", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62945-1", "protein_name": "Small ribosomal subunit protein eS32", "gene_name": "RPL41", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61927-1", "protein_name": "Large ribosomal subunit protein eL37", "gene_name": "RPL37", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42766-1", "protein_name": "Large ribosomal subunit protein uL29", "gene_name": "RPL35", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05387-1", "protein_name": "Large ribosomal subunit protein P2", "gene_name": "RPLP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92901-1", "protein_name": "Ribosomal protein uL3-like", "gene_name": "RPL3L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46778-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "RPL21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05386-1", "protein_name": "Large ribosomal subunit protein P1", "gene_name": "RPLP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49207-1", "protein_name": "Large ribosomal subunit protein eL34", "gene_name": "RPL34", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62891-1", "protein_name": "Large ribosomal subunit protein eL39", "gene_name": "RPL39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96L21-1", "protein_name": "Ribosomal protein uL16-like", "gene_name": "RPL10L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26373-1", "protein_name": "Large ribosomal subunit protein eL13", "gene_name": "RPL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86US8-1", "protein_name": "Telomerase-binding protein EST1A", "gene_name": "SMG6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYD1-1", "protein_name": "Eukaryotic peptide chain release factor GTP-binding subunit ERF3B", "gene_name": "GSPT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60866-1", "protein_name": "Small ribosomal subunit protein uS10", "gene_name": "RPS20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969Q0-1", "protein_name": "Ribosomal protein eL42-like", "gene_name": "RPL36AL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61247-1", "protein_name": "Small ribosomal subunit protein eS1", "gene_name": "RPS3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62854-1", "protein_name": "Small ribosomal subunit protein eS26", "gene_name": "RPS26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62851-1", "protein_name": "Small ribosomal subunit protein eS25", "gene_name": "RPS25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08865-1", "protein_name": "Small ribosomal subunit protein uS2", "gene_name": "RPSA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62847-1", "protein_name": "Small ribosomal subunit protein eS24", "gene_name": "RPS24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62861-1", "protein_name": "Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein", "gene_name": "FAU", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62241-1", "protein_name": "Small ribosomal subunit protein eS8", "gene_name": "RPS8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62277-1", "protein_name": "Small ribosomal subunit protein uS15", "gene_name": "RPS13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39019-1", "protein_name": "Small ribosomal subunit protein eS19", "gene_name": "RPS19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92540-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG7", "gene_name": "SMG7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPR3-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG5", "gene_name": "SMG5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62269-1", "protein_name": "Small ribosomal subunit protein uS13", "gene_name": "RPS18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02878-1", "protein_name": "Large ribosomal subunit protein eL6", "gene_name": "RPL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62273-1", "protein_name": "Small ribosomal subunit protein uS14", "gene_name": "RPS29", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8ND04-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG8", "gene_name": "SMG8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPI6-1", "protein_name": "mRNA-decapping enzyme 1A", "gene_name": "DCP1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42677-1", "protein_name": "Small ribosomal subunit protein eS27", "gene_name": "RPS27", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38919-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "EIF4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61326-1", "protein_name": "Protein mago nashi homolog", "gene_name": "MAGOH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EH5-1", "protein_name": "Ribosomal protein eL39-like 2", "gene_name": "RPL39L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15287-1", "protein_name": "RNA-binding protein with serine-rich domain 1", "gene_name": "RNPS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0W8-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG9", "gene_name": "SMG9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62263-1", "protein_name": "Small ribosomal subunit protein uS11", "gene_name": "RPS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61513-1", "protein_name": "Large ribosomal subunit protein eL43", "gene_name": "RPL37A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18124-1", "protein_name": "Large ribosomal subunit protein uL30", "gene_name": "RPL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZI7-1", "protein_name": "Regulator of nonsense transcripts 3B", "gene_name": "UPF3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15880-1", "protein_name": "Small ribosomal subunit protein uS5", "gene_name": "RPS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62750-1", "protein_name": "Large ribosomal subunit protein uL23", "gene_name": "RPL23A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62280-1", "protein_name": "Small ribosomal subunit protein uS17", "gene_name": "RPS11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62249-1", "protein_name": "Small ribosomal subunit protein uS9", "gene_name": "RPS16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50914-1", "protein_name": "Large ribosomal subunit protein eL14", "gene_name": "RPL14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62906-1", "protein_name": "Large ribosomal subunit protein uL1", "gene_name": "RPL10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23396-1", "protein_name": "Small ribosomal subunit protein uS3", "gene_name": "RPS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63151-1", "protein_name": "Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform", "gene_name": "PPP2R2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A72-1", "protein_name": "Protein mago nashi homolog 2", "gene_name": "MAGOHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62841-1", "protein_name": "Small ribosomal subunit protein uS19", "gene_name": "RPS15", "tax_name": "Human" }, { "uniprot_canonical_ac": "C0HME6-1", "protein_name": "RPL36 alternative reading frame protein", "gene_name": "RPL36", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62829-1", "protein_name": "Large ribosomal subunit protein uL14", "gene_name": "RPL23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32969-1", "protein_name": "Large ribosomal subunit protein uL6", "gene_name": "RPL9P7; RPL9P8; RPL9P9; RPL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal 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"protein_name": "Small ribosomal subunit protein eS25", "gene_name": "RPS25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08865-1", "protein_name": "Small ribosomal subunit protein uS2", "gene_name": "RPSA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62847-1", "protein_name": "Small ribosomal subunit protein eS24", "gene_name": "RPS24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62861-1", "protein_name": "Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein", "gene_name": "FAU", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62241-1", "protein_name": "Small ribosomal subunit protein eS8", "gene_name": "RPS8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62277-1", "protein_name": "Small ribosomal subunit protein uS15", "gene_name": "RPS13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39019-1", "protein_name": "Small ribosomal subunit protein eS19", "gene_name": "RPS19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62269-1", "protein_name": "Small ribosomal subunit protein uS13", "gene_name": "RPS18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02878-1", "protein_name": "Large ribosomal subunit protein eL6", "gene_name": "RPL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62273-1", "protein_name": "Small ribosomal subunit protein uS14", "gene_name": "RPS29", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HD40-1", "protein_name": "O-phosphoseryl-tRNA(Sec) selenium transferase", "gene_name": "SEPSECS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42677-1", "protein_name": "Small ribosomal subunit protein eS27", "gene_name": "RPS27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EH5-1", "protein_name": "Ribosomal protein eL39-like 2", "gene_name": "RPL39L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62263-1", "protein_name": "Small ribosomal subunit protein uS11", "gene_name": "RPS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61513-1", "protein_name": "Large ribosomal subunit protein eL43", "gene_name": "RPL37A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18124-1", "protein_name": "Large ribosomal subunit protein uL30", "gene_name": "RPL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15880-1", "protein_name": "Small ribosomal subunit protein uS5", "gene_name": "RPS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62750-1", "protein_name": "Large ribosomal subunit protein uL23", "gene_name": "RPL23A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62280-1", "protein_name": "Small ribosomal subunit protein uS17", "gene_name": "RPS11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62249-1", "protein_name": "Small ribosomal subunit protein uS9", "gene_name": "RPS16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50914-1", "protein_name": "Large ribosomal subunit protein eL14", "gene_name": "RPL14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62906-1", "protein_name": "Large ribosomal subunit protein 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protein uL11", "gene_name": "RPL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62266-1", "protein_name": "Small ribosomal subunit protein uS12", "gene_name": "RPS23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46777-1", "protein_name": "Large ribosomal subunit protein uL18", "gene_name": "RPL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62753-1", "protein_name": "Small ribosomal subunit protein eS6", "gene_name": "RPS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99611-1", "protein_name": "Selenide, water dikinase 2", "gene_name": "SEPHS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IV42-1", "protein_name": "L-seryl-tRNA(Sec) kinase", "gene_name": "PSTK", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27635-1", "protein_name": "Large ribosomal subunit protein uL16", "gene_name": "RPL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62913-1", "protein_name": "Large ribosomal subunit protein uL5", "gene_name": "RPL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36578-1", "protein_name": "Large ribosomal subunit protein uL4", "gene_name": "RPL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05388-1", "protein_name": "Large ribosomal subunit protein uL10", "gene_name": "RPLP0", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46779-1", "protein_name": "Large ribosomal subunit protein eL28", "gene_name": "RPL28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62857-1", "protein_name": "Small ribosomal subunit protein eS28", "gene_name": "RPS28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61313-1", "protein_name": "Large ribosomal subunit protein eL15", "gene_name": "RPL15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62081-1", "protein_name": "Small ribosomal subunit protein eS7", "gene_name": "RPS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71UM5-1", "protein_name": "Ribosomal protein eS27-like", "gene_name": "RPS27L", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P18621", "url": "https://www.uniprot.org/uniprotkb/P18621" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 105, "end_pos": 105, "sequence_org": "Q", "sequence_mut": "A", "comment": "Inactive in vivo.", "evidence": [ { "database": "UniProtKB", "id": "Q9HD40", "url": "https://www.uniprot.org/uniprotkb/Q9HD40" }, { "database": "PubMed", "id": "19608919", "url": "https://pubmed.ncbi.nlm.nih.gov/19608919" } ], "uniprot_canonical_ac": "Q9HD40-1" }, { "start_pos": 173, "end_pos": 173, "sequence_org": "K", "sequence_mut": "A", "comment": "Indistinguishable from wild-type.", "evidence": [ { "database": "UniProtKB", "id": "Q9HD40", "url": "https://www.uniprot.org/uniprotkb/Q9HD40" }, { "database": "PubMed", "id": "19608919", "url": "https://pubmed.ncbi.nlm.nih.gov/19608919" } ], "uniprot_canonical_ac": "Q9HD40-1" }, { "start_pos": 173, "end_pos": 173, "sequence_org": "K", "sequence_mut": "M", "comment": "Indistinguishable from wild-type.", "evidence": [ { "database": "UniProtKB", "id": "Q9HD40", "url": "https://www.uniprot.org/uniprotkb/Q9HD40" }, { "database": "PubMed", "id": "19608919", "url": "https://pubmed.ncbi.nlm.nih.gov/19608919" } ], "uniprot_canonical_ac": "Q9HD40-1" }, { "start_pos": 313, "end_pos": 313, "sequence_org": "R", "sequence_mut": "A", "comment": "Inactive in vivo.", "evidence": [ { "database": "UniProtKB", "id": "Q9HD40", "url": "https://www.uniprot.org/uniprotkb/Q9HD40" }, { "database": "PubMed", "id": "19608919", "url": "https://pubmed.ncbi.nlm.nih.gov/19608919" } ], "uniprot_canonical_ac": "Q9HD40-1" }, { "start_pos": 75, "end_pos": 75, "sequence_org": "R", "sequence_mut": "A", "comment": "Inactive in vivo.", "evidence": [ { "database": "UniProtKB", "id": "Q9HD40", "url": "https://www.uniprot.org/uniprotkb/Q9HD40" }, { "database": "PubMed", "id": "19608919", "url": "https://pubmed.ncbi.nlm.nih.gov/19608919" } ], "uniprot_canonical_ac": "Q9HD40-1" }, { "start_pos": 97, "end_pos": 97, "sequence_org": "R", "sequence_mut": "A", "comment": "Indistinguishable from wild-type.", "evidence": [ { "database": "UniProtKB", "id": "Q9HD40", "url": "https://www.uniprot.org/uniprotkb/Q9HD40" }, { "database": "PubMed", "id": "19608919", "url": "https://pubmed.ncbi.nlm.nih.gov/19608919" } ], "uniprot_canonical_ac": "Q9HD40-1" }, { "start_pos": 97, "end_pos": 97, "sequence_org": "R", "sequence_mut": "Q", "comment": "Indistinguishable from wild-type.", "evidence": [ { "database": "UniProtKB", "id": "Q9HD40", "url": "https://www.uniprot.org/uniprotkb/Q9HD40" }, { "database": "PubMed", "id": "19608919", "url": "https://pubmed.ncbi.nlm.nih.gov/19608919" } ], "uniprot_canonical_ac": "Q9HD40-1" } ], "record_id": "pubmed.19608919", "abstract": 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ribosomal subunit protein eL34", "gene_name": "RPL34", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62891-1", "protein_name": "Large ribosomal subunit protein eL39", "gene_name": "RPL39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96L21-1", "protein_name": "Ribosomal protein uL16-like", "gene_name": "RPL10L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26373-1", "protein_name": "Large ribosomal subunit protein eL13", "gene_name": "RPL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86US8-1", "protein_name": "Telomerase-binding protein EST1A", "gene_name": "SMG6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYD1-1", "protein_name": "Eukaryotic peptide chain release factor GTP-binding subunit ERF3B", "gene_name": "GSPT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60866-1", "protein_name": "Small ribosomal subunit protein uS10", "gene_name": "RPS20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969Q0-1", "protein_name": "Ribosomal protein eL42-like", "gene_name": "RPL36AL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61247-1", "protein_name": "Small ribosomal subunit protein eS1", "gene_name": "RPS3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62854-1", "protein_name": "Small ribosomal subunit protein eS26", "gene_name": "RPS26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62851-1", "protein_name": "Small ribosomal subunit protein eS25", "gene_name": "RPS25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08865-1", "protein_name": "Small ribosomal subunit protein uS2", "gene_name": "RPSA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62847-1", "protein_name": "Small ribosomal subunit protein eS24", "gene_name": "RPS24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62861-1", "protein_name": "Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein", "gene_name": "FAU", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62241-1", "protein_name": "Small ribosomal subunit protein eS8", "gene_name": "RPS8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62277-1", "protein_name": "Small ribosomal subunit protein uS15", "gene_name": "RPS13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39019-1", "protein_name": "Small ribosomal subunit protein eS19", "gene_name": "RPS19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92540-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG7", "gene_name": "SMG7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPR3-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG5", "gene_name": "SMG5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62269-1", "protein_name": "Small ribosomal subunit protein uS13", "gene_name": "RPS18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02878-1", "protein_name": "Large ribosomal subunit protein eL6", "gene_name": "RPL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62273-1", "protein_name": "Small ribosomal subunit protein uS14", "gene_name": "RPS29", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8ND04-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG8", "gene_name": "SMG8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPI6-1", "protein_name": "mRNA-decapping enzyme 1A", "gene_name": "DCP1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42677-1", "protein_name": "Small ribosomal subunit protein eS27", "gene_name": "RPS27", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38919-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "EIF4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61326-1", "protein_name": "Protein mago nashi homolog", "gene_name": "MAGOH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EH5-1", "protein_name": "Ribosomal protein eL39-like 2", "gene_name": "RPL39L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15287-1", "protein_name": "RNA-binding protein with serine-rich domain 1", "gene_name": "RNPS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0W8-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG9", "gene_name": "SMG9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62263-1", "protein_name": "Small ribosomal subunit protein uS11", "gene_name": "RPS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61513-1", "protein_name": "Large ribosomal subunit protein eL43", "gene_name": "RPL37A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18124-1", "protein_name": "Large ribosomal subunit protein uL30", "gene_name": "RPL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZI7-1", "protein_name": "Regulator of nonsense transcripts 3B", "gene_name": "UPF3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15880-1", "protein_name": "Small ribosomal subunit protein uS5", "gene_name": "RPS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62750-1", "protein_name": "Large ribosomal subunit protein uL23", "gene_name": "RPL23A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62280-1", "protein_name": "Small ribosomal subunit protein uS17", "gene_name": "RPS11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62249-1", "protein_name": "Small ribosomal subunit protein uS9", "gene_name": "RPS16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50914-1", "protein_name": "Large ribosomal subunit protein eL14", "gene_name": "RPL14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62906-1", "protein_name": "Large ribosomal subunit protein uL1", "gene_name": "RPL10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23396-1", "protein_name": "Small ribosomal subunit protein uS3", "gene_name": "RPS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63151-1", "protein_name": "Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform", "gene_name": "PPP2R2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A72-1", "protein_name": "Protein mago nashi homolog 2", "gene_name": "MAGOHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62841-1", "protein_name": "Small ribosomal subunit protein uS19", "gene_name": "RPS15", "tax_name": "Human" }, { "uniprot_canonical_ac": "C0HME6-1", "protein_name": "RPL36 alternative reading frame protein", "gene_name": "RPL36", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62829-1", "protein_name": "Large ribosomal subunit protein uL14", "gene_name": "RPL23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32969-1", "protein_name": "Large ribosomal subunit protein uL6", "gene_name": "RPL9P7; RPL9P8; RPL9P9; RPL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30050-1", "protein_name": "Large ribosomal subunit protein uL11", "gene_name": "RPL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q04637-1", "protein_name": "Eukaryotic translation initiation factor 4 gamma 1", "gene_name": "EIF4G1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62266-1", "protein_name": "Small ribosomal subunit protein uS12", "gene_name": "RPS23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46777-1", "protein_name": "Large ribosomal subunit protein uL18", "gene_name": "RPL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96Q15-1", "protein_name": "Serine/threonine-protein kinase SMG1", "gene_name": "SMG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62753-1", "protein_name": "Small ribosomal subunit protein eS6", "gene_name": "RPS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27635-1", "protein_name": "Large ribosomal subunit protein uL16", "gene_name": "RPL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62913-1", "protein_name": "Large ribosomal subunit protein uL5", "gene_name": "RPL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36578-1", "protein_name": "Large ribosomal subunit protein uL4", "gene_name": "RPL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HAU5-1", "protein_name": "Regulator of nonsense transcripts 2", "gene_name": "UPF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5S9-1", "protein_name": "RNA-binding protein 8A", "gene_name": "RBM8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15234-1", "protein_name": "Protein CASC3", "gene_name": "CASC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05388-1", "protein_name": "Large ribosomal subunit protein uL10", "gene_name": "RPLP0", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46779-1", "protein_name": "Large ribosomal subunit protein eL28", "gene_name": "RPL28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62857-1", "protein_name": "Small ribosomal subunit protein eS28", "gene_name": "RPS28", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPJ4-1", "protein_name": "Proline-rich nuclear receptor coactivator 2", "gene_name": "PNRC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15170-1", "protein_name": "Eukaryotic peptide chain release factor GTP-binding subunit ERF3A", "gene_name": "GSPT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62495-1", "protein_name": "Eukaryotic peptide chain release factor subunit 1", "gene_name": "ETF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61313-1", "protein_name": "Large ribosomal subunit protein eL15", "gene_name": "RPL15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62081-1", "protein_name": "Small ribosomal subunit protein eS7", "gene_name": "RPS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71UM5-1", "protein_name": "Ribosomal protein eS27-like", "gene_name": "RPS27L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30153-1", "protein_name": "Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform", "gene_name": "PPP2R1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67775-1", "protein_name": "Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform", "gene_name": "PPP2CA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92900-1", "protein_name": "Regulator of nonsense transcripts 1", "gene_name": "UPF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P18621", "url": "https://www.uniprot.org/uniprotkb/P18621" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.19859661", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 116 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": 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"n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Gene expression networks: competing mRNA decay pathways in mammalian cells.", "journal": "Biochemical Society transactions", "date": "2009", "authors": "Maquat LE, Gong C", "reference": { "type": "PubMed", "id": "19909264", "url": "https://pubmed.ncbi.nlm.nih.gov/19909264" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P18621-1", "protein_name": "Large ribosomal subunit protein uL22", "gene_name": "RPL17", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H1J1-1", "protein_name": "Regulator of nonsense transcripts 3A", "gene_name": "UPF3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46776-1", "protein_name": "Large ribosomal subunit protein uL15", "gene_name": "RPL27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46782-1", "protein_name": "Small ribosomal subunit protein uS7", "gene_name": "RPS5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47914-1", "protein_name": "Large ribosomal subunit protein eL29", "gene_name": "RPL29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62244-1", "protein_name": "Small ribosomal subunit protein uS8", "gene_name": "RPS15A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22090-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 1", "gene_name": "RPS4Y1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P5R6-1", "protein_name": "Ribosomal protein eL22-like", "gene_name": "RPL22L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08708-1", "protein_name": "Small ribosomal subunit protein eS17", "gene_name": "RPS17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46783-1", "protein_name": "Small ribosomal subunit protein eS10", "gene_name": "RPS10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62917-1", "protein_name": "Large ribosomal subunit protein uL2", "gene_name": "RPL8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25398-1", "protein_name": "Small ribosomal subunit protein eS12", "gene_name": "RPS12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46781-1", "protein_name": "Small ribosomal subunit protein uS4", "gene_name": "RPS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62424-1", "protein_name": "Large ribosomal subunit protein eL8", "gene_name": "RPL7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62701-1", "protein_name": "Small ribosomal subunit protein eS4, X isoform", "gene_name": "RPS4X", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63220-1", "protein_name": "Small ribosomal subunit protein eS21", "gene_name": "RPS21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TD47-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 2", "gene_name": "RPS4Y2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11940-1", "protein_name": "Polyadenylate-binding protein 1", "gene_name": "PABPC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07020-1", "protein_name": "Large ribosomal subunit protein eL18", "gene_name": "RPL18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35268-1", "protein_name": "Large ribosomal subunit protein eL22", "gene_name": "RPL22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83881-1", "protein_name": "Large ribosomal subunit protein eL42", "gene_name": "RPL36A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61353-1", "protein_name": "Large ribosomal subunit protein eL27", "gene_name": "RPL27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNX3-1", "protein_name": "Ribosomal protein uL24-like", "gene_name": "RPL26L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02543-1", "protein_name": "Large ribosomal subunit protein eL20", "gene_name": "RPL18A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40429-1", "protein_name": "Large ribosomal subunit protein uL13", "gene_name": "RPL13A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63173-1", "protein_name": "Large ribosomal subunit protein eL38", "gene_name": "RPL38", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62910-1", "protein_name": "Large ribosomal subunit protein eL32", "gene_name": "RPL32", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39023-1", "protein_name": "Large ribosomal subunit protein uL3", "gene_name": "RPL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18077-1", "protein_name": "Large ribosomal subunit protein eL33", "gene_name": "RPL35A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61254-1", "protein_name": "Large ribosomal subunit protein uL24", "gene_name": "RPL26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84098-1", "protein_name": "Large ribosomal subunit protein eL19", "gene_name": "RPL19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62888-1", "protein_name": "Large ribosomal subunit protein eL30", "gene_name": "RPL30", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83731-1", "protein_name": "Large ribosomal subunit protein eL24", "gene_name": "RPL24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62899-1", "protein_name": "Large ribosomal subunit protein eL31", "gene_name": "RPL31", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62945-1", "protein_name": "Small ribosomal subunit protein eS32", "gene_name": "RPL41", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61927-1", "protein_name": "Large ribosomal subunit protein eL37", "gene_name": "RPL37", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42766-1", "protein_name": "Large ribosomal subunit protein uL29", "gene_name": "RPL35", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05387-1", "protein_name": "Large ribosomal subunit protein P2", "gene_name": "RPLP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92901-1", "protein_name": "Ribosomal protein uL3-like", "gene_name": "RPL3L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46778-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "RPL21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05386-1", "protein_name": "Large ribosomal subunit protein P1", "gene_name": "RPLP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49207-1", "protein_name": "Large ribosomal subunit protein eL34", "gene_name": "RPL34", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62891-1", "protein_name": "Large ribosomal subunit protein eL39", "gene_name": "RPL39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96L21-1", "protein_name": "Ribosomal protein uL16-like", "gene_name": "RPL10L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26373-1", "protein_name": "Large ribosomal subunit protein eL13", "gene_name": "RPL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86US8-1", "protein_name": "Telomerase-binding protein EST1A", "gene_name": "SMG6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYD1-1", "protein_name": "Eukaryotic peptide chain release factor GTP-binding subunit ERF3B", "gene_name": "GSPT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60866-1", "protein_name": "Small ribosomal subunit protein uS10", "gene_name": "RPS20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969Q0-1", "protein_name": "Ribosomal protein eL42-like", "gene_name": "RPL36AL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61247-1", "protein_name": "Small ribosomal subunit protein eS1", "gene_name": "RPS3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62854-1", "protein_name": "Small ribosomal subunit protein eS26", "gene_name": "RPS26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62851-1", "protein_name": "Small ribosomal subunit protein eS25", "gene_name": "RPS25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08865-1", "protein_name": "Small ribosomal subunit protein uS2", "gene_name": "RPSA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62847-1", "protein_name": "Small ribosomal subunit protein eS24", "gene_name": "RPS24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62861-1", "protein_name": "Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein", "gene_name": "FAU", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62241-1", "protein_name": "Small ribosomal subunit protein eS8", "gene_name": "RPS8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62277-1", "protein_name": "Small ribosomal subunit protein uS15", "gene_name": "RPS13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39019-1", "protein_name": "Small ribosomal subunit protein eS19", "gene_name": "RPS19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92540-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG7", "gene_name": "SMG7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPR3-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG5", "gene_name": "SMG5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62269-1", "protein_name": "Small ribosomal subunit protein uS13", "gene_name": "RPS18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02878-1", "protein_name": "Large ribosomal subunit protein eL6", "gene_name": "RPL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62273-1", "protein_name": "Small ribosomal subunit protein uS14", "gene_name": "RPS29", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8ND04-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG8", "gene_name": "SMG8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPI6-1", "protein_name": "mRNA-decapping enzyme 1A", "gene_name": "DCP1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42677-1", "protein_name": "Small ribosomal subunit protein eS27", "gene_name": "RPS27", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38919-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "EIF4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61326-1", "protein_name": "Protein mago nashi homolog", "gene_name": "MAGOH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EH5-1", "protein_name": "Ribosomal protein eL39-like 2", "gene_name": "RPL39L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15287-1", "protein_name": "RNA-binding protein with serine-rich domain 1", "gene_name": "RNPS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0W8-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG9", "gene_name": "SMG9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62263-1", "protein_name": "Small ribosomal subunit protein uS11", "gene_name": "RPS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61513-1", "protein_name": "Large ribosomal subunit protein eL43", "gene_name": "RPL37A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18124-1", "protein_name": "Large ribosomal subunit protein uL30", "gene_name": "RPL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZI7-1", "protein_name": "Regulator of nonsense transcripts 3B", "gene_name": "UPF3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15880-1", "protein_name": "Small ribosomal subunit protein uS5", "gene_name": "RPS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62750-1", "protein_name": "Large ribosomal subunit protein uL23", "gene_name": "RPL23A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62280-1", "protein_name": "Small ribosomal subunit protein uS17", "gene_name": "RPS11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62249-1", "protein_name": "Small ribosomal subunit protein uS9", "gene_name": "RPS16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50914-1", "protein_name": "Large ribosomal subunit protein eL14", "gene_name": "RPL14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62906-1", "protein_name": "Large ribosomal subunit protein uL1", "gene_name": "RPL10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23396-1", "protein_name": "Small ribosomal subunit protein uS3", "gene_name": "RPS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63151-1", "protein_name": "Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform", "gene_name": "PPP2R2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A72-1", "protein_name": "Protein mago nashi homolog 2", "gene_name": "MAGOHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62841-1", "protein_name": "Small ribosomal subunit protein uS19", "gene_name": "RPS15", "tax_name": "Human" }, { "uniprot_canonical_ac": "C0HME6-1", "protein_name": "RPL36 alternative reading frame protein", "gene_name": "RPL36", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62829-1", "protein_name": "Large ribosomal subunit protein uL14", "gene_name": "RPL23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32969-1", "protein_name": "Large ribosomal subunit protein uL6", "gene_name": "RPL9P7; RPL9P8; RPL9P9; RPL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30050-1", "protein_name": "Large ribosomal subunit protein uL11", "gene_name": "RPL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q04637-1", "protein_name": "Eukaryotic translation initiation factor 4 gamma 1", "gene_name": "EIF4G1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62266-1", "protein_name": "Small ribosomal subunit protein uS12", "gene_name": "RPS23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46777-1", "protein_name": "Large ribosomal subunit protein uL18", "gene_name": "RPL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96Q15-1", "protein_name": "Serine/threonine-protein kinase SMG1", "gene_name": "SMG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62753-1", "protein_name": "Small ribosomal subunit protein eS6", "gene_name": "RPS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27635-1", "protein_name": "Large ribosomal subunit protein uL16", "gene_name": "RPL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62913-1", "protein_name": "Large ribosomal subunit protein uL5", "gene_name": "RPL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36578-1", "protein_name": "Large ribosomal subunit protein uL4", "gene_name": "RPL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HAU5-1", "protein_name": "Regulator of nonsense transcripts 2", "gene_name": "UPF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5S9-1", "protein_name": "RNA-binding protein 8A", "gene_name": "RBM8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15234-1", "protein_name": "Protein CASC3", "gene_name": "CASC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05388-1", "protein_name": "Large ribosomal subunit protein uL10", "gene_name": "RPLP0", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46779-1", "protein_name": "Large ribosomal subunit protein eL28", "gene_name": "RPL28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62857-1", "protein_name": "Small ribosomal subunit protein eS28", "gene_name": "RPS28", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPJ4-1", "protein_name": "Proline-rich nuclear receptor coactivator 2", "gene_name": "PNRC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15170-1", "protein_name": "Eukaryotic peptide chain release factor GTP-binding subunit ERF3A", "gene_name": "GSPT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62495-1", "protein_name": "Eukaryotic peptide chain release factor subunit 1", "gene_name": "ETF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61313-1", "protein_name": "Large ribosomal subunit protein eL15", "gene_name": "RPL15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62081-1", "protein_name": "Small ribosomal subunit protein eS7", "gene_name": "RPS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71UM5-1", "protein_name": "Ribosomal protein eS27-like", "gene_name": "RPS27L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30153-1", "protein_name": "Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform", "gene_name": "PPP2R1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67775-1", "protein_name": "Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform", "gene_name": "PPP2CA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92900-1", "protein_name": "Regulator of nonsense transcripts 1", "gene_name": "UPF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P18621", "url": "https://www.uniprot.org/uniprotkb/P18621" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.19909264", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 116 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "How and where are nonsense mRNAs degraded in mammalian cells?", "journal": "RNA biology", "date": "2010", "authors": "Muhlemann O, Lykke-Andersen J", "reference": { "type": "PubMed", "id": "20023408", "url": "https://pubmed.ncbi.nlm.nih.gov/20023408" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P18621-1", "protein_name": "Large ribosomal subunit protein uL22", "gene_name": "RPL17", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H1J1-1", "protein_name": "Regulator of nonsense transcripts 3A", "gene_name": "UPF3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46776-1", "protein_name": "Large ribosomal subunit protein uL15", "gene_name": "RPL27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46782-1", "protein_name": "Small ribosomal subunit protein uS7", "gene_name": "RPS5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47914-1", "protein_name": "Large ribosomal subunit protein eL29", "gene_name": "RPL29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62244-1", "protein_name": "Small ribosomal subunit protein uS8", "gene_name": "RPS15A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22090-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 1", "gene_name": "RPS4Y1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P5R6-1", "protein_name": "Ribosomal protein eL22-like", "gene_name": "RPL22L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08708-1", "protein_name": "Small ribosomal subunit protein eS17", "gene_name": "RPS17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46783-1", "protein_name": "Small ribosomal subunit protein eS10", "gene_name": "RPS10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62917-1", "protein_name": "Large ribosomal subunit protein uL2", "gene_name": "RPL8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25398-1", "protein_name": "Small ribosomal subunit protein eS12", "gene_name": "RPS12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46781-1", "protein_name": "Small ribosomal subunit protein uS4", "gene_name": "RPS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62424-1", "protein_name": "Large ribosomal subunit protein eL8", "gene_name": "RPL7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62701-1", "protein_name": "Small ribosomal subunit protein eS4, X isoform", "gene_name": "RPS4X", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63220-1", "protein_name": "Small ribosomal subunit protein eS21", "gene_name": "RPS21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TD47-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 2", "gene_name": "RPS4Y2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11940-1", "protein_name": "Polyadenylate-binding protein 1", "gene_name": "PABPC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07020-1", "protein_name": "Large ribosomal subunit protein eL18", "gene_name": "RPL18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35268-1", "protein_name": "Large ribosomal subunit protein eL22", "gene_name": "RPL22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83881-1", "protein_name": "Large ribosomal subunit protein eL42", "gene_name": "RPL36A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61353-1", "protein_name": "Large ribosomal subunit protein eL27", "gene_name": "RPL27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNX3-1", "protein_name": "Ribosomal protein uL24-like", "gene_name": "RPL26L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02543-1", "protein_name": "Large ribosomal subunit protein eL20", "gene_name": "RPL18A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40429-1", "protein_name": "Large ribosomal subunit protein uL13", "gene_name": "RPL13A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63173-1", "protein_name": "Large ribosomal subunit protein eL38", "gene_name": "RPL38", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62910-1", "protein_name": "Large ribosomal subunit protein eL32", "gene_name": "RPL32", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39023-1", "protein_name": "Large ribosomal subunit protein uL3", "gene_name": "RPL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18077-1", "protein_name": "Large ribosomal subunit protein eL33", "gene_name": "RPL35A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61254-1", "protein_name": "Large ribosomal subunit protein uL24", "gene_name": "RPL26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84098-1", "protein_name": "Large ribosomal subunit protein eL19", "gene_name": "RPL19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62888-1", "protein_name": "Large ribosomal subunit protein eL30", "gene_name": "RPL30", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83731-1", "protein_name": "Large ribosomal subunit protein eL24", "gene_name": "RPL24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62899-1", "protein_name": "Large ribosomal subunit protein eL31", "gene_name": "RPL31", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62945-1", "protein_name": "Small ribosomal subunit protein eS32", "gene_name": "RPL41", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61927-1", "protein_name": "Large ribosomal subunit protein eL37", "gene_name": "RPL37", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42766-1", "protein_name": "Large ribosomal subunit protein uL29", "gene_name": "RPL35", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05387-1", "protein_name": "Large ribosomal subunit protein P2", "gene_name": "RPLP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92901-1", "protein_name": "Ribosomal protein uL3-like", "gene_name": "RPL3L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46778-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "RPL21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05386-1", "protein_name": "Large ribosomal subunit protein P1", "gene_name": "RPLP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49207-1", "protein_name": "Large ribosomal subunit protein eL34", "gene_name": "RPL34", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62891-1", "protein_name": "Large ribosomal subunit protein eL39", "gene_name": "RPL39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96L21-1", "protein_name": "Ribosomal protein uL16-like", "gene_name": "RPL10L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26373-1", "protein_name": "Large ribosomal subunit protein eL13", "gene_name": "RPL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86US8-1", "protein_name": "Telomerase-binding protein EST1A", "gene_name": "SMG6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYD1-1", "protein_name": "Eukaryotic peptide chain release factor GTP-binding subunit ERF3B", "gene_name": "GSPT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60866-1", "protein_name": "Small ribosomal subunit protein uS10", "gene_name": "RPS20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969Q0-1", "protein_name": "Ribosomal protein eL42-like", "gene_name": "RPL36AL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61247-1", "protein_name": "Small ribosomal subunit protein eS1", "gene_name": "RPS3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62854-1", "protein_name": "Small ribosomal subunit protein eS26", "gene_name": "RPS26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62851-1", "protein_name": "Small ribosomal subunit protein eS25", "gene_name": "RPS25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08865-1", "protein_name": "Small ribosomal subunit protein uS2", "gene_name": "RPSA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62847-1", "protein_name": "Small ribosomal subunit protein eS24", "gene_name": "RPS24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62861-1", "protein_name": "Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein", "gene_name": "FAU", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62241-1", "protein_name": "Small ribosomal subunit protein eS8", "gene_name": "RPS8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62277-1", "protein_name": "Small ribosomal subunit protein uS15", "gene_name": "RPS13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39019-1", "protein_name": "Small ribosomal subunit protein eS19", "gene_name": "RPS19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92540-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG7", "gene_name": "SMG7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPR3-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG5", "gene_name": "SMG5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62269-1", "protein_name": "Small ribosomal subunit protein uS13", "gene_name": "RPS18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02878-1", "protein_name": "Large ribosomal subunit protein eL6", "gene_name": "RPL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62273-1", "protein_name": "Small ribosomal subunit protein uS14", "gene_name": "RPS29", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8ND04-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG8", "gene_name": "SMG8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPI6-1", "protein_name": "mRNA-decapping enzyme 1A", "gene_name": "DCP1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42677-1", "protein_name": "Small ribosomal subunit protein eS27", "gene_name": "RPS27", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38919-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "EIF4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61326-1", "protein_name": "Protein mago nashi homolog", "gene_name": "MAGOH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EH5-1", "protein_name": "Ribosomal protein eL39-like 2", "gene_name": "RPL39L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15287-1", "protein_name": "RNA-binding protein with serine-rich domain 1", "gene_name": "RNPS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0W8-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG9", "gene_name": "SMG9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62263-1", "protein_name": "Small ribosomal subunit protein uS11", "gene_name": "RPS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61513-1", "protein_name": "Large ribosomal subunit protein eL43", "gene_name": "RPL37A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18124-1", "protein_name": "Large ribosomal subunit protein uL30", "gene_name": "RPL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZI7-1", "protein_name": "Regulator of nonsense transcripts 3B", "gene_name": "UPF3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15880-1", "protein_name": "Small ribosomal subunit protein uS5", "gene_name": "RPS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62750-1", "protein_name": "Large ribosomal subunit protein uL23", "gene_name": "RPL23A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62280-1", "protein_name": "Small ribosomal subunit protein uS17", "gene_name": "RPS11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62249-1", "protein_name": "Small ribosomal subunit protein uS9", "gene_name": "RPS16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50914-1", "protein_name": "Large ribosomal subunit protein eL14", "gene_name": "RPL14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62906-1", "protein_name": "Large ribosomal subunit protein uL1", "gene_name": "RPL10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23396-1", "protein_name": "Small ribosomal subunit protein uS3", "gene_name": "RPS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63151-1", "protein_name": "Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform", "gene_name": "PPP2R2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A72-1", "protein_name": "Protein mago nashi homolog 2", "gene_name": "MAGOHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62841-1", "protein_name": "Small ribosomal subunit protein uS19", "gene_name": "RPS15", "tax_name": "Human" }, { "uniprot_canonical_ac": "C0HME6-1", "protein_name": "RPL36 alternative reading frame protein", "gene_name": "RPL36", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62829-1", "protein_name": "Large ribosomal subunit protein uL14", "gene_name": "RPL23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32969-1", "protein_name": "Large ribosomal subunit protein uL6", "gene_name": "RPL9P7; RPL9P8; RPL9P9; RPL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30050-1", "protein_name": "Large ribosomal subunit protein uL11", "gene_name": "RPL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q04637-1", "protein_name": "Eukaryotic translation initiation factor 4 gamma 1", "gene_name": "EIF4G1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62266-1", "protein_name": "Small ribosomal subunit protein uS12", "gene_name": "RPS23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46777-1", "protein_name": "Large ribosomal subunit protein uL18", "gene_name": "RPL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96Q15-1", "protein_name": "Serine/threonine-protein kinase SMG1", "gene_name": "SMG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62753-1", "protein_name": "Small ribosomal subunit protein eS6", "gene_name": "RPS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27635-1", "protein_name": "Large ribosomal subunit protein uL16", "gene_name": "RPL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62913-1", "protein_name": "Large ribosomal subunit protein uL5", "gene_name": "RPL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36578-1", "protein_name": "Large ribosomal subunit protein uL4", "gene_name": "RPL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HAU5-1", "protein_name": "Regulator of nonsense transcripts 2", "gene_name": "UPF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5S9-1", "protein_name": "RNA-binding protein 8A", "gene_name": "RBM8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15234-1", "protein_name": "Protein CASC3", "gene_name": "CASC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05388-1", "protein_name": "Large ribosomal subunit protein uL10", "gene_name": "RPLP0", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46779-1", "protein_name": "Large ribosomal subunit protein eL28", "gene_name": "RPL28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62857-1", "protein_name": "Small ribosomal subunit protein eS28", "gene_name": "RPS28", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPJ4-1", "protein_name": "Proline-rich nuclear receptor coactivator 2", "gene_name": "PNRC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15170-1", "protein_name": "Eukaryotic peptide chain release factor GTP-binding subunit ERF3A", "gene_name": "GSPT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62495-1", "protein_name": "Eukaryotic peptide chain release factor subunit 1", "gene_name": "ETF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61313-1", "protein_name": "Large ribosomal subunit protein eL15", "gene_name": "RPL15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62081-1", "protein_name": "Small ribosomal subunit protein eS7", "gene_name": "RPS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71UM5-1", "protein_name": "Ribosomal protein eS27-like", "gene_name": "RPS27L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30153-1", "protein_name": "Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform", "gene_name": "PPP2R1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67775-1", "protein_name": "Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform", "gene_name": "PPP2CA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92900-1", "protein_name": "Regulator of nonsense transcripts 1", "gene_name": "UPF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P18621", "url": "https://www.uniprot.org/uniprotkb/P18621" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.20023408", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 116 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Genetic relationship between acylpeptide hydrolase and acylase, two hydrolytic enzymes with similar binding but different catalytic specificities.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "1991", "authors": "Jones WM, Scaloni A, Bossa F, Popowicz AM, Schneewind O, Manning JM", "reference": { "type": "PubMed", "id": "2006156", "url": "https://pubmed.ncbi.nlm.nih.gov/2006156" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P18621-1", "protein_name": "Large ribosomal subunit protein uL22", "gene_name": "RPL17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46776-1", "protein_name": "Large ribosomal subunit protein uL15", "gene_name": "RPL27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46782-1", "protein_name": "Small ribosomal subunit protein uS7", "gene_name": "RPS5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47914-1", "protein_name": "Large ribosomal subunit protein eL29", "gene_name": "RPL29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62244-1", "protein_name": "Small ribosomal subunit protein uS8", "gene_name": "RPS15A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22090-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 1", "gene_name": "RPS4Y1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P5R6-1", "protein_name": "Ribosomal protein eL22-like", "gene_name": "RPL22L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08708-1", "protein_name": "Small ribosomal subunit protein eS17", "gene_name": "RPS17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46783-1", "protein_name": "Small ribosomal subunit protein eS10", "gene_name": "RPS10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62917-1", "protein_name": "Large ribosomal subunit protein uL2", "gene_name": "RPL8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25398-1", "protein_name": "Small ribosomal subunit protein eS12", "gene_name": "RPS12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46781-1", "protein_name": "Small ribosomal subunit protein uS4", "gene_name": "RPS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62424-1", "protein_name": "Large ribosomal subunit protein eL8", "gene_name": "RPL7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62701-1", "protein_name": "Small ribosomal subunit protein eS4, X isoform", "gene_name": "RPS4X", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63220-1", "protein_name": "Small ribosomal subunit protein eS21", "gene_name": "RPS21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TD47-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 2", "gene_name": "RPS4Y2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UI30-1", "protein_name": "Multifunctional methyltransferase subunit TRM112-like protein", "gene_name": "TRMT112", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07020-1", "protein_name": "Large ribosomal subunit protein eL18", "gene_name": "RPL18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35268-1", "protein_name": "Large ribosomal subunit protein eL22", "gene_name": "RPL22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83881-1", "protein_name": "Large ribosomal subunit protein eL42", "gene_name": "RPL36A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61353-1", "protein_name": "Large ribosomal subunit protein eL27", "gene_name": "RPL27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNX3-1", "protein_name": "Ribosomal protein uL24-like", "gene_name": "RPL26L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02543-1", "protein_name": "Large ribosomal subunit protein eL20", "gene_name": "RPL18A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40429-1", "protein_name": "Large ribosomal subunit protein uL13", "gene_name": "RPL13A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63173-1", "protein_name": "Large ribosomal subunit protein eL38", "gene_name": "RPL38", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62910-1", "protein_name": "Large ribosomal subunit protein eL32", "gene_name": "RPL32", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39023-1", "protein_name": "Large ribosomal subunit protein uL3", "gene_name": "RPL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18077-1", "protein_name": "Large ribosomal subunit protein eL33", "gene_name": "RPL35A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61254-1", "protein_name": "Large ribosomal subunit protein uL24", "gene_name": "RPL26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84098-1", "protein_name": "Large ribosomal subunit protein eL19", "gene_name": "RPL19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62888-1", "protein_name": "Large ribosomal subunit protein eL30", "gene_name": "RPL30", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83731-1", "protein_name": "Large ribosomal subunit protein eL24", "gene_name": "RPL24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62899-1", "protein_name": "Large ribosomal subunit protein eL31", "gene_name": "RPL31", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62945-1", "protein_name": "Small ribosomal subunit protein eS32", "gene_name": "RPL41", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61927-1", "protein_name": "Large ribosomal subunit protein eL37", "gene_name": "RPL37", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42766-1", "protein_name": "Large ribosomal subunit protein uL29", "gene_name": "RPL35", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05387-1", "protein_name": "Large ribosomal subunit protein P2", "gene_name": "RPLP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92901-1", "protein_name": "Ribosomal protein uL3-like", "gene_name": "RPL3L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46778-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "RPL21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05386-1", "protein_name": "Large ribosomal subunit protein P1", "gene_name": "RPLP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49207-1", "protein_name": "Large ribosomal subunit protein eL34", "gene_name": "RPL34", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62891-1", "protein_name": "Large ribosomal subunit protein eL39", "gene_name": "RPL39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96L21-1", "protein_name": "Ribosomal protein uL16-like", "gene_name": "RPL10L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26373-1", "protein_name": "Large ribosomal subunit protein eL13", "gene_name": "RPL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYD1-1", "protein_name": "Eukaryotic peptide chain release factor GTP-binding subunit ERF3B", "gene_name": "GSPT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60866-1", "protein_name": "Small ribosomal subunit protein uS10", "gene_name": "RPS20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969Q0-1", "protein_name": "Ribosomal protein eL42-like", "gene_name": "RPL36AL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61247-1", "protein_name": "Small ribosomal subunit protein eS1", "gene_name": "RPS3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62854-1", "protein_name": "Small ribosomal subunit protein eS26", "gene_name": "RPS26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62851-1", "protein_name": "Small ribosomal subunit protein eS25", "gene_name": "RPS25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08865-1", "protein_name": "Small ribosomal subunit protein uS2", "gene_name": "RPSA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62847-1", "protein_name": "Small ribosomal subunit protein eS24", "gene_name": "RPS24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62861-1", "protein_name": "Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein", "gene_name": "FAU", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62241-1", "protein_name": "Small ribosomal subunit protein eS8", "gene_name": "RPS8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62277-1", "protein_name": "Small ribosomal subunit protein uS15", "gene_name": "RPS13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39019-1", "protein_name": "Small ribosomal subunit protein eS19", "gene_name": "RPS19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62269-1", "protein_name": "Small ribosomal subunit protein uS13", "gene_name": "RPS18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02878-1", "protein_name": "Large ribosomal subunit protein eL6", "gene_name": "RPL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62273-1", "protein_name": "Small ribosomal subunit protein uS14", "gene_name": "RPS29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42677-1", "protein_name": "Small ribosomal subunit protein eS27", "gene_name": "RPS27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EH5-1", "protein_name": "Ribosomal protein eL39-like 2", "gene_name": "RPL39L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62263-1", "protein_name": "Small ribosomal subunit protein uS11", "gene_name": "RPS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61513-1", "protein_name": "Large ribosomal subunit protein eL43", "gene_name": "RPL37A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18124-1", "protein_name": "Large ribosomal subunit protein uL30", "gene_name": "RPL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15880-1", "protein_name": "Small ribosomal subunit protein uS5", "gene_name": "RPS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62750-1", "protein_name": "Large ribosomal subunit protein uL23", "gene_name": "RPL23A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62280-1", "protein_name": "Small ribosomal subunit protein uS17", "gene_name": "RPS11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62249-1", "protein_name": "Small ribosomal subunit protein uS9", "gene_name": "RPS16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50914-1", "protein_name": "Large ribosomal subunit protein eL14", "gene_name": "RPL14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62906-1", "protein_name": "Large ribosomal subunit protein uL1", "gene_name": "RPL10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23396-1", "protein_name": "Small ribosomal subunit protein uS3", "gene_name": "RPS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62841-1", "protein_name": "Small ribosomal subunit protein uS19", "gene_name": "RPS15", "tax_name": "Human" }, { "uniprot_canonical_ac": "C0HME6-1", "protein_name": "RPL36 alternative reading frame protein", "gene_name": "RPL36", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62829-1", "protein_name": "Large ribosomal subunit protein uL14", "gene_name": "RPL23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32969-1", "protein_name": "Large ribosomal subunit protein uL6", "gene_name": "RPL9P7; RPL9P8; RPL9P9; RPL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30050-1", "protein_name": "Large ribosomal subunit protein uL11", "gene_name": "RPL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62266-1", "protein_name": "Small ribosomal subunit protein uS12", "gene_name": "RPS23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46777-1", "protein_name": "Large ribosomal subunit protein uL18", "gene_name": "RPL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62753-1", "protein_name": "Small ribosomal subunit protein eS6", "gene_name": "RPS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27635-1", "protein_name": "Large ribosomal subunit protein uL16", "gene_name": "RPL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62913-1", "protein_name": "Large ribosomal subunit protein uL5", "gene_name": "RPL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36578-1", "protein_name": "Large ribosomal subunit protein uL4", "gene_name": "RPL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05388-1", "protein_name": "Large ribosomal subunit protein uL10", "gene_name": "RPLP0", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46779-1", "protein_name": "Large ribosomal subunit protein eL28", "gene_name": "RPL28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62857-1", "protein_name": "Small ribosomal subunit protein eS28", "gene_name": "RPS28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15170-1", "protein_name": "Eukaryotic peptide chain release factor GTP-binding subunit ERF3A", "gene_name": "GSPT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62495-1", "protein_name": "Eukaryotic peptide chain release factor subunit 1", "gene_name": "ETF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5N5-1", "protein_name": "Methyltransferase HEMK2", "gene_name": "HEMK2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61313-1", "protein_name": "Large ribosomal subunit protein eL15", "gene_name": "RPL15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62081-1", "protein_name": "Small ribosomal subunit protein eS7", "gene_name": "RPS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71UM5-1", "protein_name": "Ribosomal protein eS27-like", "gene_name": "RPS27L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13798-1", "protein_name": "Acylamino-acid-releasing enzyme", "gene_name": "APEH", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P18621", "url": "https://www.uniprot.org/uniprotkb/P18621" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.2006156", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 94 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Eukaryotic protein synthesis: still a mystery.", "journal": "The Journal of biological chemistry", "date": "2010", "authors": "Merrick WC", "reference": { "type": "PubMed", "id": "20444697", "url": "https://pubmed.ncbi.nlm.nih.gov/20444697" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P18621-1", "protein_name": "Large ribosomal subunit protein uL22", "gene_name": "RPL17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46776-1", "protein_name": "Large ribosomal subunit protein uL15", "gene_name": "RPL27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46782-1", "protein_name": "Small ribosomal subunit protein uS7", "gene_name": "RPS5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47914-1", "protein_name": "Large ribosomal subunit protein eL29", "gene_name": "RPL29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62244-1", "protein_name": "Small ribosomal subunit protein uS8", "gene_name": "RPS15A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22090-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 1", "gene_name": "RPS4Y1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P5R6-1", "protein_name": "Ribosomal protein eL22-like", "gene_name": "RPL22L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08708-1", "protein_name": "Small ribosomal subunit protein eS17", "gene_name": "RPS17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67812-1", "protein_name": "Signal peptidase complex catalytic subunit SEC11A", "gene_name": "SEC11A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46783-1", "protein_name": "Small ribosomal subunit protein eS10", "gene_name": "RPS10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62917-1", "protein_name": "Large ribosomal subunit protein uL2", "gene_name": "RPL8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25398-1", "protein_name": "Small ribosomal subunit protein eS12", "gene_name": "RPS12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46781-1", "protein_name": "Small ribosomal subunit protein uS4", "gene_name": "RPS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62424-1", "protein_name": "Large ribosomal subunit protein eL8", "gene_name": "RPL7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62701-1", "protein_name": "Small ribosomal subunit protein eS4, X isoform", "gene_name": "RPS4X", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63220-1", "protein_name": "Small ribosomal subunit protein eS21", "gene_name": "RPS21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TD47-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 2", "gene_name": "RPS4Y2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07020-1", "protein_name": "Large ribosomal subunit protein eL18", "gene_name": "RPL18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35268-1", "protein_name": "Large ribosomal subunit protein eL22", "gene_name": "RPL22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83881-1", "protein_name": "Large ribosomal subunit protein eL42", "gene_name": "RPL36A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61353-1", "protein_name": "Large ribosomal subunit protein eL27", "gene_name": "RPL27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNX3-1", "protein_name": "Ribosomal protein uL24-like", "gene_name": "RPL26L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02543-1", "protein_name": "Large ribosomal subunit protein eL20", "gene_name": "RPL18A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40429-1", "protein_name": "Large ribosomal subunit protein uL13", "gene_name": "RPL13A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63173-1", "protein_name": "Large ribosomal subunit protein eL38", "gene_name": "RPL38", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62910-1", "protein_name": "Large ribosomal subunit protein eL32", "gene_name": "RPL32", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39023-1", "protein_name": "Large ribosomal subunit protein uL3", "gene_name": "RPL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18077-1", "protein_name": "Large ribosomal subunit protein eL33", "gene_name": "RPL35A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61254-1", "protein_name": "Large ribosomal subunit protein uL24", "gene_name": "RPL26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84098-1", "protein_name": "Large ribosomal subunit protein eL19", "gene_name": "RPL19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62888-1", "protein_name": "Large ribosomal subunit protein eL30", "gene_name": "RPL30", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83731-1", "protein_name": "Large ribosomal subunit protein eL24", "gene_name": "RPL24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62899-1", "protein_name": "Large ribosomal subunit protein eL31", "gene_name": "RPL31", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62945-1", "protein_name": "Small ribosomal subunit protein eS32", "gene_name": "RPL41", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61927-1", "protein_name": "Large ribosomal subunit protein eL37", "gene_name": "RPL37", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42766-1", "protein_name": "Large ribosomal subunit protein uL29", "gene_name": "RPL35", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05387-1", "protein_name": "Large ribosomal subunit protein P2", "gene_name": "RPLP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92901-1", "protein_name": "Ribosomal protein uL3-like", "gene_name": "RPL3L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46778-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "RPL21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05386-1", "protein_name": "Large ribosomal subunit protein P1", "gene_name": "RPLP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49207-1", "protein_name": "Large ribosomal subunit protein eL34", "gene_name": "RPL34", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62891-1", "protein_name": "Large ribosomal subunit protein eL39", "gene_name": "RPL39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96L21-1", "protein_name": "Ribosomal protein uL16-like", "gene_name": "RPL10L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26373-1", "protein_name": "Large ribosomal subunit protein eL13", "gene_name": "RPL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60866-1", "protein_name": "Small ribosomal subunit protein uS10", "gene_name": "RPS20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969Q0-1", "protein_name": "Ribosomal protein eL42-like", "gene_name": "RPL36AL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61247-1", "protein_name": "Small ribosomal subunit protein eS1", "gene_name": "RPS3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62854-1", "protein_name": "Small ribosomal subunit protein eS26", "gene_name": "RPS26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62851-1", "protein_name": "Small ribosomal subunit protein eS25", "gene_name": "RPS25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08865-1", "protein_name": "Small ribosomal subunit protein uS2", "gene_name": "RPSA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62847-1", "protein_name": "Small ribosomal subunit protein eS24", "gene_name": "RPS24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62861-1", "protein_name": "Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein", "gene_name": "FAU", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62241-1", "protein_name": "Small ribosomal subunit protein eS8", "gene_name": "RPS8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39656-1", "protein_name": "Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit", "gene_name": "DDOST", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62277-1", "protein_name": "Small ribosomal subunit protein uS15", "gene_name": "RPS13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39019-1", "protein_name": "Small ribosomal subunit protein eS19", "gene_name": "RPS19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H9S3-1", "protein_name": "Protein transport protein Sec61 subunit alpha isoform 2", "gene_name": "SEC61A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62269-1", "protein_name": "Small ribosomal subunit protein uS13", "gene_name": "RPS18", "tax_name": "Human" }, { "uniprot_canonical_ac": "O76094-1", "protein_name": "Signal recognition particle subunit SRP72", "gene_name": "SRP72", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHB9-1", "protein_name": "Signal recognition particle subunit SRP68", "gene_name": "SRP68", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09132-1", "protein_name": "Signal recognition particle 19 kDa protein", "gene_name": "SRP19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04844-1", "protein_name": "Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2", "gene_name": "RPN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02878-1", "protein_name": "Large ribosomal subunit protein eL6", "gene_name": "RPL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62273-1", "protein_name": "Small ribosomal subunit protein uS14", "gene_name": "RPS29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04843-1", "protein_name": "Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1", "gene_name": "RPN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15629-1", "protein_name": "Translocating chain-associated membrane protein 1", "gene_name": "TRAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42677-1", "protein_name": "Small ribosomal subunit protein eS27", "gene_name": "RPS27", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60468-1", "protein_name": "Protein transport protein Sec61 subunit beta", "gene_name": "SEC61B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EH5-1", "protein_name": "Ribosomal protein eL39-like 2", "gene_name": "RPL39L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62263-1", "protein_name": "Small ribosomal subunit protein uS11", "gene_name": "RPS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61513-1", "protein_name": "Large ribosomal subunit protein eL43", "gene_name": "RPL37A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18124-1", "protein_name": "Large ribosomal subunit protein uL30", "gene_name": "RPL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNL2-1", "protein_name": "Translocon-associated protein subunit gamma", "gene_name": "SSR3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15880-1", "protein_name": "Small ribosomal subunit protein uS5", "gene_name": "RPS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62750-1", "protein_name": "Large ribosomal subunit protein uL23", "gene_name": "RPL23A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62280-1", "protein_name": "Small ribosomal subunit protein uS17", "gene_name": "RPS11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62249-1", "protein_name": "Small ribosomal subunit protein uS9", "gene_name": "RPS16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50914-1", "protein_name": "Large ribosomal subunit protein eL14", "gene_name": "RPL14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62906-1", "protein_name": "Large ribosomal subunit protein uL1", "gene_name": "RPL10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P43307-1", "protein_name": "Translocon-associated protein subunit alpha", "gene_name": "SSR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23396-1", "protein_name": "Small ribosomal subunit protein uS3", "gene_name": "RPS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49458-1", "protein_name": "Signal recognition particle 9 kDa protein", "gene_name": "SRP9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62841-1", "protein_name": "Small ribosomal subunit protein uS19", "gene_name": "RPS15", "tax_name": "Human" }, { "uniprot_canonical_ac": "C0HME6-1", "protein_name": "RPL36 alternative reading frame protein", "gene_name": "RPL36", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62829-1", "protein_name": "Large ribosomal subunit protein uL14", "gene_name": "RPL23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32969-1", "protein_name": "Large ribosomal subunit protein uL6", "gene_name": "RPL9P7; RPL9P8; RPL9P9; RPL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61619-1", "protein_name": "Protein transport protein Sec61 subunit alpha isoform 1", "gene_name": "SEC61A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30050-1", "protein_name": "Large ribosomal subunit protein uL11", "gene_name": "RPL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62266-1", "protein_name": "Small ribosomal subunit protein uS12", "gene_name": "RPS23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46777-1", "protein_name": "Large ribosomal subunit protein uL18", "gene_name": "RPL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62753-1", "protein_name": "Small ribosomal subunit protein eS6", "gene_name": "RPS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60059-1", "protein_name": "Protein transport protein Sec61 subunit gamma", "gene_name": "SEC61G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27635-1", "protein_name": "Large ribosomal subunit protein uL16", "gene_name": "RPL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62913-1", "protein_name": "Large ribosomal subunit protein uL5", "gene_name": "RPL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36578-1", "protein_name": "Large ribosomal subunit protein uL4", "gene_name": "RPL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08240-1", "protein_name": "Signal recognition particle receptor subunit alpha", "gene_name": "SRPRA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61011-1", "protein_name": "Signal recognition particle subunit SRP54", "gene_name": "SRP54", "tax_name": "Human" }, { "uniprot_canonical_ac": "P43308-1", "protein_name": "Translocon-associated protein subunit beta", "gene_name": "SSR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P37108-1", "protein_name": "Signal recognition particle 14 kDa protein", "gene_name": "SRP14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5M8-1", "protein_name": "Signal recognition particle receptor subunit beta", "gene_name": "SRPRB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51571-1", "protein_name": "Translocon-associated protein subunit delta", "gene_name": "SSR4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61009-1", "protein_name": "Signal peptidase complex subunit 3", "gene_name": "SPCS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6A9-1", "protein_name": "Signal peptidase complex subunit 1", "gene_name": "SPCS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05388-1", "protein_name": "Large ribosomal subunit protein uL10", "gene_name": "RPLP0", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46779-1", "protein_name": "Large ribosomal subunit protein eL28", "gene_name": "RPL28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62857-1", "protein_name": "Small ribosomal subunit protein eS28", "gene_name": "RPS28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61313-1", "protein_name": "Large ribosomal subunit protein eL15", "gene_name": "RPL15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62081-1", "protein_name": "Small ribosomal subunit protein eS7", "gene_name": "RPS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71UM5-1", "protein_name": "Ribosomal protein eS27-like", "gene_name": "RPS27L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BY50-1", "protein_name": "Signal peptidase complex catalytic subunit SEC11C", "gene_name": "SEC11C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15005-1", "protein_name": "Signal peptidase complex subunit 2", "gene_name": "SPCS2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P18621", "url": "https://www.uniprot.org/uniprotkb/P18621" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.20444697", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 113 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Insights into the recruitment of the NMD machinery from the crystal structure of a core EJC-UPF3b complex.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2010", "authors": "Buchwald G, Ebert J, Basquin C, Sauliere J, Jayachandran U, Bono F, Le Hir H, Conti E", "reference": { "type": "PubMed", "id": "20479275", "url": "https://pubmed.ncbi.nlm.nih.gov/20479275" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P18621-1", "protein_name": "Large ribosomal subunit protein uL22", "gene_name": "RPL17", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H1J1-1", "protein_name": "Regulator of nonsense transcripts 3A", "gene_name": "UPF3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46776-1", "protein_name": "Large ribosomal subunit protein uL15", "gene_name": "RPL27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46782-1", "protein_name": "Small ribosomal subunit protein uS7", "gene_name": "RPS5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47914-1", "protein_name": "Large ribosomal subunit protein eL29", "gene_name": "RPL29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62244-1", "protein_name": "Small ribosomal subunit protein uS8", "gene_name": "RPS15A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22090-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 1", "gene_name": "RPS4Y1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P5R6-1", "protein_name": "Ribosomal protein eL22-like", "gene_name": "RPL22L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08708-1", "protein_name": "Small ribosomal subunit protein eS17", "gene_name": "RPS17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46783-1", "protein_name": "Small ribosomal subunit protein eS10", "gene_name": "RPS10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62917-1", "protein_name": "Large ribosomal subunit protein uL2", "gene_name": "RPL8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25398-1", "protein_name": "Small ribosomal subunit protein eS12", "gene_name": "RPS12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46781-1", "protein_name": "Small ribosomal subunit protein uS4", "gene_name": "RPS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62424-1", "protein_name": "Large ribosomal subunit protein eL8", "gene_name": "RPL7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62701-1", "protein_name": "Small ribosomal subunit protein eS4, X isoform", "gene_name": "RPS4X", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63220-1", "protein_name": "Small ribosomal subunit protein eS21", "gene_name": "RPS21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TD47-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 2", "gene_name": "RPS4Y2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11940-1", "protein_name": "Polyadenylate-binding protein 1", "gene_name": "PABPC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07020-1", "protein_name": "Large ribosomal subunit protein eL18", "gene_name": "RPL18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35268-1", "protein_name": "Large ribosomal subunit protein eL22", "gene_name": "RPL22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83881-1", "protein_name": "Large ribosomal subunit protein eL42", "gene_name": "RPL36A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61353-1", "protein_name": "Large ribosomal subunit protein eL27", "gene_name": "RPL27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNX3-1", "protein_name": "Ribosomal protein uL24-like", "gene_name": "RPL26L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02543-1", "protein_name": "Large ribosomal subunit protein eL20", "gene_name": "RPL18A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40429-1", "protein_name": "Large ribosomal subunit protein uL13", "gene_name": "RPL13A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63173-1", "protein_name": "Large ribosomal subunit protein eL38", "gene_name": "RPL38", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62910-1", "protein_name": "Large ribosomal subunit protein eL32", "gene_name": "RPL32", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39023-1", "protein_name": "Large ribosomal subunit protein uL3", "gene_name": "RPL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18077-1", "protein_name": "Large ribosomal subunit protein eL33", "gene_name": "RPL35A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61254-1", "protein_name": "Large ribosomal subunit protein uL24", "gene_name": "RPL26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84098-1", "protein_name": "Large ribosomal subunit protein eL19", "gene_name": "RPL19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62888-1", "protein_name": "Large ribosomal subunit protein eL30", "gene_name": "RPL30", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83731-1", "protein_name": "Large ribosomal subunit protein eL24", "gene_name": "RPL24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62899-1", "protein_name": "Large ribosomal subunit protein eL31", "gene_name": "RPL31", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62945-1", "protein_name": "Small ribosomal subunit protein eS32", "gene_name": "RPL41", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61927-1", "protein_name": "Large ribosomal subunit protein eL37", "gene_name": "RPL37", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42766-1", "protein_name": "Large ribosomal subunit protein uL29", "gene_name": "RPL35", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05387-1", "protein_name": "Large ribosomal subunit protein P2", "gene_name": "RPLP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92901-1", "protein_name": "Ribosomal protein uL3-like", "gene_name": "RPL3L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46778-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "RPL21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05386-1", "protein_name": "Large ribosomal subunit protein P1", "gene_name": "RPLP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49207-1", "protein_name": "Large ribosomal subunit protein eL34", "gene_name": "RPL34", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62891-1", "protein_name": "Large ribosomal subunit protein eL39", "gene_name": "RPL39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96L21-1", "protein_name": "Ribosomal protein uL16-like", "gene_name": "RPL10L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26373-1", "protein_name": "Large ribosomal subunit protein eL13", "gene_name": "RPL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86US8-1", "protein_name": "Telomerase-binding protein EST1A", "gene_name": "SMG6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYD1-1", "protein_name": "Eukaryotic peptide chain release factor GTP-binding subunit ERF3B", "gene_name": "GSPT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60866-1", "protein_name": "Small ribosomal subunit protein uS10", "gene_name": "RPS20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969Q0-1", "protein_name": "Ribosomal protein eL42-like", "gene_name": "RPL36AL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61247-1", "protein_name": "Small ribosomal subunit protein eS1", "gene_name": "RPS3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62854-1", "protein_name": "Small ribosomal subunit protein eS26", "gene_name": "RPS26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62851-1", "protein_name": "Small ribosomal subunit protein eS25", "gene_name": "RPS25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08865-1", "protein_name": "Small ribosomal subunit protein uS2", "gene_name": "RPSA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62847-1", "protein_name": "Small ribosomal subunit protein eS24", "gene_name": "RPS24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62861-1", "protein_name": "Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein", "gene_name": "FAU", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62241-1", "protein_name": "Small ribosomal subunit protein eS8", "gene_name": "RPS8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62277-1", "protein_name": "Small ribosomal subunit protein uS15", "gene_name": "RPS13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39019-1", "protein_name": "Small ribosomal subunit protein eS19", "gene_name": "RPS19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92540-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG7", "gene_name": "SMG7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPR3-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG5", "gene_name": "SMG5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62269-1", "protein_name": "Small ribosomal subunit protein uS13", "gene_name": "RPS18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02878-1", "protein_name": "Large ribosomal subunit protein eL6", "gene_name": "RPL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62273-1", "protein_name": "Small ribosomal subunit protein uS14", "gene_name": "RPS29", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8ND04-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG8", "gene_name": "SMG8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPI6-1", "protein_name": "mRNA-decapping enzyme 1A", "gene_name": "DCP1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42677-1", "protein_name": "Small ribosomal subunit protein eS27", "gene_name": "RPS27", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38919-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "EIF4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61326-1", "protein_name": "Protein mago nashi homolog", "gene_name": "MAGOH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EH5-1", "protein_name": "Ribosomal protein eL39-like 2", "gene_name": "RPL39L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15287-1", "protein_name": "RNA-binding protein with serine-rich domain 1", "gene_name": "RNPS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0W8-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG9", "gene_name": "SMG9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62263-1", "protein_name": "Small ribosomal subunit protein uS11", "gene_name": "RPS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61513-1", "protein_name": "Large ribosomal subunit protein eL43", "gene_name": "RPL37A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18124-1", "protein_name": "Large ribosomal subunit protein uL30", "gene_name": "RPL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZI7-1", "protein_name": "Regulator of nonsense transcripts 3B", "gene_name": "UPF3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15880-1", "protein_name": "Small ribosomal subunit protein uS5", "gene_name": "RPS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62750-1", "protein_name": "Large ribosomal subunit protein uL23", "gene_name": "RPL23A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62280-1", "protein_name": "Small ribosomal subunit protein uS17", "gene_name": "RPS11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62249-1", "protein_name": "Small ribosomal subunit protein uS9", "gene_name": "RPS16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50914-1", "protein_name": "Large ribosomal subunit protein eL14", "gene_name": "RPL14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62906-1", "protein_name": "Large ribosomal subunit protein uL1", "gene_name": "RPL10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23396-1", "protein_name": "Small ribosomal subunit protein uS3", "gene_name": "RPS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63151-1", "protein_name": "Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform", "gene_name": "PPP2R2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A72-1", "protein_name": "Protein mago nashi homolog 2", "gene_name": "MAGOHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62841-1", "protein_name": "Small ribosomal subunit protein uS19", "gene_name": "RPS15", "tax_name": "Human" }, { "uniprot_canonical_ac": "C0HME6-1", "protein_name": "RPL36 alternative reading frame protein", "gene_name": "RPL36", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62829-1", "protein_name": "Large ribosomal subunit protein uL14", "gene_name": "RPL23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32969-1", "protein_name": "Large ribosomal subunit protein uL6", "gene_name": "RPL9P7; RPL9P8; RPL9P9; RPL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30050-1", "protein_name": "Large ribosomal subunit protein uL11", "gene_name": "RPL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q04637-1", "protein_name": "Eukaryotic translation initiation factor 4 gamma 1", "gene_name": "EIF4G1", "tax_name": "Human" }, { 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"gene_name": "RPS20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969Q0-1", "protein_name": "Ribosomal protein eL42-like", "gene_name": "RPL36AL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61247-1", "protein_name": "Small ribosomal subunit protein eS1", "gene_name": "RPS3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62854-1", "protein_name": "Small ribosomal subunit protein eS26", "gene_name": "RPS26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62851-1", "protein_name": "Small ribosomal subunit protein eS25", "gene_name": "RPS25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08865-1", "protein_name": "Small ribosomal subunit protein uS2", "gene_name": "RPSA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62847-1", "protein_name": "Small ribosomal subunit protein eS24", "gene_name": "RPS24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62861-1", "protein_name": "Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein", "gene_name": "FAU", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62241-1", "protein_name": "Small ribosomal subunit protein eS8", "gene_name": "RPS8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62277-1", "protein_name": "Small ribosomal subunit protein uS15", "gene_name": "RPS13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39019-1", "protein_name": "Small ribosomal subunit protein eS19", "gene_name": "RPS19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92540-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG7", "gene_name": "SMG7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPR3-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG5", "gene_name": "SMG5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62269-1", "protein_name": "Small ribosomal subunit protein uS13", "gene_name": "RPS18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02878-1", "protein_name": "Large ribosomal subunit protein eL6", "gene_name": "RPL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62273-1", "protein_name": "Small ribosomal subunit protein uS14", "gene_name": "RPS29", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8ND04-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG8", "gene_name": "SMG8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPI6-1", "protein_name": "mRNA-decapping enzyme 1A", "gene_name": "DCP1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42677-1", "protein_name": "Small ribosomal subunit protein eS27", "gene_name": "RPS27", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38919-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "EIF4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61326-1", "protein_name": "Protein mago nashi homolog", "gene_name": "MAGOH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EH5-1", "protein_name": "Ribosomal protein eL39-like 2", "gene_name": "RPL39L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15287-1", "protein_name": "RNA-binding protein with serine-rich domain 1", "gene_name": "RNPS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0W8-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG9", "gene_name": "SMG9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62263-1", "protein_name": "Small ribosomal subunit protein uS11", "gene_name": "RPS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61513-1", "protein_name": "Large ribosomal subunit protein eL43", "gene_name": "RPL37A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18124-1", "protein_name": "Large ribosomal subunit protein uL30", "gene_name": "RPL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZI7-1", "protein_name": "Regulator of nonsense transcripts 3B", "gene_name": "UPF3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15880-1", "protein_name": "Small ribosomal subunit protein uS5", "gene_name": "RPS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62750-1", "protein_name": "Large ribosomal subunit protein uL23", "gene_name": "RPL23A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62280-1", "protein_name": "Small ribosomal subunit protein uS17", "gene_name": "RPS11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62249-1", "protein_name": "Small ribosomal subunit protein uS9", "gene_name": "RPS16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50914-1", "protein_name": "Large ribosomal subunit protein eL14", "gene_name": "RPL14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62906-1", "protein_name": "Large ribosomal subunit protein uL1", "gene_name": "RPL10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23396-1", "protein_name": "Small ribosomal subunit protein uS3", "gene_name": "RPS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63151-1", "protein_name": "Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform", "gene_name": "PPP2R2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A72-1", "protein_name": "Protein mago nashi homolog 2", "gene_name": "MAGOHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62841-1", "protein_name": "Small ribosomal subunit protein uS19", "gene_name": "RPS15", "tax_name": "Human" }, { "uniprot_canonical_ac": "C0HME6-1", "protein_name": "RPL36 alternative reading frame protein", "gene_name": "RPL36", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62829-1", "protein_name": "Large ribosomal subunit protein uL14", "gene_name": "RPL23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32969-1", "protein_name": "Large ribosomal subunit protein uL6", "gene_name": "RPL9P7; RPL9P8; RPL9P9; RPL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30050-1", "protein_name": "Large ribosomal subunit protein uL11", "gene_name": "RPL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q04637-1", "protein_name": "Eukaryotic translation initiation factor 4 gamma 1", "gene_name": "EIF4G1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62266-1", "protein_name": "Small ribosomal subunit protein uS12", "gene_name": "RPS23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46777-1", "protein_name": "Large ribosomal subunit protein uL18", "gene_name": "RPL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96Q15-1", "protein_name": "Serine/threonine-protein kinase SMG1", "gene_name": "SMG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62753-1", "protein_name": "Small ribosomal subunit protein eS6", "gene_name": "RPS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27635-1", "protein_name": "Large ribosomal subunit protein uL16", "gene_name": "RPL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62913-1", "protein_name": "Large ribosomal subunit protein uL5", "gene_name": "RPL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36578-1", "protein_name": "Large ribosomal subunit protein uL4", "gene_name": "RPL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HAU5-1", "protein_name": "Regulator of nonsense transcripts 2", "gene_name": "UPF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5S9-1", "protein_name": "RNA-binding protein 8A", "gene_name": "RBM8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15234-1", "protein_name": "Protein CASC3", "gene_name": "CASC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05388-1", "protein_name": "Large ribosomal subunit protein uL10", "gene_name": "RPLP0", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46779-1", "protein_name": "Large ribosomal subunit protein eL28", "gene_name": "RPL28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62857-1", "protein_name": "Small ribosomal subunit protein eS28", "gene_name": "RPS28", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPJ4-1", "protein_name": "Proline-rich nuclear receptor coactivator 2", "gene_name": "PNRC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15170-1", "protein_name": "Eukaryotic peptide chain release factor GTP-binding subunit ERF3A", "gene_name": "GSPT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62495-1", "protein_name": "Eukaryotic peptide chain release factor subunit 1", "gene_name": "ETF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61313-1", "protein_name": "Large ribosomal subunit protein eL15", "gene_name": "RPL15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62081-1", "protein_name": "Small ribosomal subunit protein eS7", "gene_name": "RPS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71UM5-1", "protein_name": "Ribosomal protein eS27-like", "gene_name": "RPS27L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30153-1", "protein_name": "Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform", "gene_name": "PPP2R1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67775-1", "protein_name": "Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform", "gene_name": "PPP2CA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92900-1", "protein_name": "Regulator of nonsense transcripts 1", "gene_name": "UPF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P18621", "url": "https://www.uniprot.org/uniprotkb/P18621" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.20691628", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 116 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Characterization of SMG-9, an essential component of the nonsense-mediated mRNA decay SMG1C complex.", "journal": "Nucleic acids research", "date": "2011", "authors": "Fernandez IS, Yamashita A, Arias-Palomo E, Bamba Y, Bartolome RA, Canales MA, Teixido J, Ohno S, Llorca O", "reference": { "type": "PubMed", "id": "20817927", "url": "https://pubmed.ncbi.nlm.nih.gov/20817927" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P18621-1", "protein_name": "Large ribosomal subunit protein uL22", "gene_name": "RPL17", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H1J1-1", "protein_name": "Regulator of nonsense transcripts 3A", "gene_name": "UPF3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46776-1", "protein_name": "Large ribosomal subunit protein uL15", "gene_name": "RPL27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46782-1", "protein_name": "Small ribosomal subunit protein uS7", "gene_name": "RPS5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47914-1", "protein_name": "Large ribosomal subunit protein eL29", "gene_name": "RPL29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62244-1", "protein_name": "Small ribosomal subunit protein uS8", "gene_name": "RPS15A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22090-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 1", "gene_name": "RPS4Y1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P5R6-1", "protein_name": "Ribosomal protein eL22-like", "gene_name": "RPL22L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08708-1", "protein_name": "Small ribosomal subunit protein eS17", "gene_name": "RPS17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46783-1", "protein_name": "Small ribosomal subunit protein eS10", "gene_name": "RPS10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62917-1", "protein_name": "Large ribosomal subunit protein uL2", "gene_name": "RPL8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25398-1", "protein_name": "Small ribosomal subunit protein eS12", "gene_name": "RPS12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46781-1", "protein_name": "Small ribosomal subunit protein uS4", "gene_name": "RPS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62424-1", "protein_name": "Large ribosomal subunit protein eL8", "gene_name": "RPL7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62701-1", "protein_name": "Small ribosomal subunit protein eS4, X isoform", "gene_name": "RPS4X", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63220-1", "protein_name": "Small ribosomal subunit protein eS21", "gene_name": "RPS21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TD47-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 2", "gene_name": "RPS4Y2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11940-1", "protein_name": "Polyadenylate-binding protein 1", "gene_name": "PABPC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07020-1", "protein_name": "Large ribosomal subunit protein eL18", "gene_name": "RPL18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35268-1", "protein_name": "Large ribosomal subunit protein eL22", "gene_name": "RPL22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83881-1", "protein_name": "Large ribosomal subunit protein eL42", "gene_name": "RPL36A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61353-1", "protein_name": "Large ribosomal subunit protein eL27", "gene_name": "RPL27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNX3-1", "protein_name": "Ribosomal protein uL24-like", "gene_name": "RPL26L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02543-1", "protein_name": "Large ribosomal subunit protein eL20", "gene_name": "RPL18A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40429-1", "protein_name": "Large ribosomal subunit protein uL13", "gene_name": "RPL13A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63173-1", "protein_name": "Large ribosomal subunit protein eL38", "gene_name": "RPL38", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62910-1", "protein_name": "Large ribosomal subunit protein eL32", "gene_name": "RPL32", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39023-1", "protein_name": "Large ribosomal subunit protein uL3", "gene_name": "RPL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18077-1", "protein_name": "Large ribosomal subunit protein eL33", "gene_name": "RPL35A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61254-1", "protein_name": "Large ribosomal subunit protein uL24", "gene_name": "RPL26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84098-1", "protein_name": "Large ribosomal subunit protein eL19", "gene_name": "RPL19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62888-1", "protein_name": "Large ribosomal subunit protein eL30", "gene_name": "RPL30", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83731-1", "protein_name": "Large ribosomal subunit protein eL24", "gene_name": "RPL24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62899-1", "protein_name": "Large ribosomal subunit protein eL31", "gene_name": "RPL31", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62945-1", "protein_name": "Small ribosomal subunit protein eS32", "gene_name": "RPL41", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61927-1", "protein_name": "Large ribosomal subunit protein eL37", "gene_name": "RPL37", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42766-1", "protein_name": "Large ribosomal subunit protein uL29", "gene_name": "RPL35", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05387-1", "protein_name": "Large ribosomal subunit protein P2", "gene_name": "RPLP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92901-1", "protein_name": "Ribosomal protein uL3-like", "gene_name": "RPL3L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46778-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "RPL21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05386-1", "protein_name": "Large ribosomal subunit protein P1", "gene_name": "RPLP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49207-1", "protein_name": "Large ribosomal subunit protein eL34", "gene_name": "RPL34", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62891-1", "protein_name": "Large ribosomal subunit protein eL39", "gene_name": "RPL39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96L21-1", "protein_name": "Ribosomal protein uL16-like", "gene_name": "RPL10L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26373-1", "protein_name": "Large ribosomal subunit protein eL13", "gene_name": "RPL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86US8-1", "protein_name": "Telomerase-binding protein EST1A", "gene_name": "SMG6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYD1-1", "protein_name": "Eukaryotic peptide chain release factor GTP-binding subunit ERF3B", "gene_name": "GSPT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60866-1", "protein_name": "Small ribosomal subunit protein uS10", "gene_name": "RPS20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969Q0-1", "protein_name": "Ribosomal protein eL42-like", "gene_name": "RPL36AL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61247-1", "protein_name": "Small ribosomal subunit protein eS1", "gene_name": "RPS3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62854-1", "protein_name": "Small ribosomal subunit protein eS26", "gene_name": "RPS26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62851-1", "protein_name": "Small ribosomal subunit protein eS25", "gene_name": "RPS25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08865-1", "protein_name": "Small ribosomal subunit protein uS2", "gene_name": "RPSA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62847-1", "protein_name": "Small ribosomal subunit protein eS24", "gene_name": "RPS24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62861-1", "protein_name": "Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein", "gene_name": "FAU", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62241-1", "protein_name": "Small ribosomal subunit protein eS8", "gene_name": "RPS8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62277-1", "protein_name": "Small ribosomal subunit protein uS15", "gene_name": "RPS13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39019-1", "protein_name": "Small ribosomal subunit protein eS19", "gene_name": "RPS19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92540-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG7", "gene_name": "SMG7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPR3-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG5", "gene_name": "SMG5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62269-1", "protein_name": "Small ribosomal subunit protein uS13", "gene_name": "RPS18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02878-1", "protein_name": "Large ribosomal subunit protein eL6", "gene_name": "RPL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62273-1", "protein_name": "Small ribosomal subunit protein uS14", "gene_name": "RPS29", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8ND04-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG8", "gene_name": "SMG8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPI6-1", "protein_name": "mRNA-decapping enzyme 1A", "gene_name": "DCP1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42677-1", "protein_name": "Small ribosomal subunit protein eS27", "gene_name": "RPS27", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38919-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "EIF4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61326-1", "protein_name": "Protein mago nashi homolog", "gene_name": "MAGOH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EH5-1", "protein_name": "Ribosomal protein eL39-like 2", "gene_name": "RPL39L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15287-1", "protein_name": "RNA-binding protein with serine-rich domain 1", "gene_name": "RNPS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0W8-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG9", "gene_name": "SMG9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62263-1", "protein_name": "Small ribosomal subunit protein uS11", "gene_name": "RPS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61513-1", "protein_name": "Large ribosomal subunit protein eL43", "gene_name": "RPL37A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18124-1", "protein_name": "Large ribosomal subunit protein uL30", "gene_name": "RPL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZI7-1", "protein_name": "Regulator of nonsense transcripts 3B", "gene_name": "UPF3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15880-1", "protein_name": "Small ribosomal subunit protein uS5", "gene_name": "RPS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62750-1", "protein_name": "Large ribosomal subunit protein uL23", "gene_name": "RPL23A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62280-1", "protein_name": "Small ribosomal subunit protein uS17", "gene_name": "RPS11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62249-1", "protein_name": "Small ribosomal subunit protein uS9", "gene_name": "RPS16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50914-1", "protein_name": "Large ribosomal subunit protein eL14", "gene_name": "RPL14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62906-1", "protein_name": "Large ribosomal subunit protein uL1", "gene_name": "RPL10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23396-1", "protein_name": "Small ribosomal subunit protein uS3", "gene_name": "RPS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63151-1", "protein_name": "Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform", "gene_name": "PPP2R2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A72-1", "protein_name": "Protein mago nashi homolog 2", "gene_name": "MAGOHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62841-1", "protein_name": "Small ribosomal subunit protein uS19", "gene_name": "RPS15", "tax_name": "Human" }, { "uniprot_canonical_ac": "C0HME6-1", "protein_name": "RPL36 alternative reading frame protein", "gene_name": "RPL36", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62829-1", "protein_name": "Large ribosomal subunit protein uL14", "gene_name": "RPL23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32969-1", "protein_name": "Large ribosomal subunit protein uL6", "gene_name": "RPL9P7; RPL9P8; RPL9P9; RPL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30050-1", "protein_name": "Large ribosomal subunit protein uL11", "gene_name": "RPL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q04637-1", "protein_name": "Eukaryotic translation initiation factor 4 gamma 1", "gene_name": "EIF4G1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62266-1", "protein_name": "Small ribosomal subunit protein uS12", "gene_name": "RPS23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46777-1", "protein_name": "Large ribosomal subunit protein uL18", "gene_name": "RPL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96Q15-1", "protein_name": "Serine/threonine-protein kinase SMG1", "gene_name": "SMG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62753-1", "protein_name": "Small ribosomal subunit protein eS6", "gene_name": "RPS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27635-1", "protein_name": "Large ribosomal subunit protein uL16", "gene_name": "RPL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62913-1", "protein_name": "Large ribosomal subunit protein uL5", "gene_name": "RPL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36578-1", "protein_name": "Large ribosomal subunit protein uL4", "gene_name": "RPL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HAU5-1", "protein_name": "Regulator of nonsense transcripts 2", "gene_name": "UPF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5S9-1", "protein_name": "RNA-binding protein 8A", "gene_name": "RBM8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15234-1", "protein_name": "Protein CASC3", "gene_name": "CASC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05388-1", "protein_name": "Large ribosomal subunit protein uL10", "gene_name": "RPLP0", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46779-1", "protein_name": "Large ribosomal subunit protein eL28", "gene_name": "RPL28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62857-1", "protein_name": "Small ribosomal subunit protein eS28", "gene_name": "RPS28", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPJ4-1", "protein_name": "Proline-rich nuclear receptor coactivator 2", "gene_name": "PNRC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15170-1", "protein_name": "Eukaryotic peptide chain release factor GTP-binding subunit ERF3A", "gene_name": "GSPT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62495-1", "protein_name": "Eukaryotic peptide chain release factor subunit 1", "gene_name": "ETF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61313-1", "protein_name": "Large ribosomal subunit protein eL15", "gene_name": "RPL15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62081-1", "protein_name": "Small ribosomal subunit protein eS7", "gene_name": "RPS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71UM5-1", "protein_name": "Ribosomal protein eS27-like", "gene_name": "RPS27L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30153-1", "protein_name": "Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform", "gene_name": "PPP2R1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67775-1", "protein_name": "Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform", "gene_name": "PPP2CA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92900-1", "protein_name": "Regulator of nonsense transcripts 1", "gene_name": "UPF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P18621", "url": "https://www.uniprot.org/uniprotkb/P18621" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.20817927", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 116 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "SMG6 interacts with the exon junction complex via two conserved EJC-binding motifs (EBMs) required for nonsense-mediated mRNA decay.", "journal": "Genes & development", "date": "2010", "authors": "Kashima I, Jonas S, Jayachandran U, Buchwald G, Conti E, Lupas AN, Izaurralde E", "reference": { "type": "PubMed", "id": "20930030", "url": "https://pubmed.ncbi.nlm.nih.gov/20930030" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P18621-1", "protein_name": "Large ribosomal subunit protein uL22", "gene_name": "RPL17", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H1J1-1", "protein_name": "Regulator of nonsense transcripts 3A", "gene_name": "UPF3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46776-1", "protein_name": "Large ribosomal subunit protein uL15", "gene_name": "RPL27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46782-1", "protein_name": "Small ribosomal subunit protein uS7", "gene_name": "RPS5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47914-1", "protein_name": "Large ribosomal subunit protein eL29", "gene_name": "RPL29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62244-1", "protein_name": "Small ribosomal subunit protein uS8", "gene_name": "RPS15A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22090-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 1", "gene_name": "RPS4Y1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P5R6-1", "protein_name": "Ribosomal protein eL22-like", "gene_name": "RPL22L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08708-1", "protein_name": "Small ribosomal subunit protein eS17", "gene_name": "RPS17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46783-1", "protein_name": "Small ribosomal subunit protein eS10", "gene_name": "RPS10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62917-1", "protein_name": "Large ribosomal subunit protein uL2", "gene_name": "RPL8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25398-1", "protein_name": "Small ribosomal subunit protein eS12", "gene_name": "RPS12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46781-1", "protein_name": "Small ribosomal subunit protein uS4", "gene_name": "RPS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62424-1", "protein_name": "Large ribosomal subunit protein eL8", "gene_name": "RPL7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62701-1", "protein_name": "Small ribosomal subunit protein eS4, X isoform", "gene_name": "RPS4X", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63220-1", "protein_name": "Small ribosomal subunit protein eS21", "gene_name": "RPS21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TD47-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 2", "gene_name": "RPS4Y2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11940-1", "protein_name": "Polyadenylate-binding protein 1", "gene_name": "PABPC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07020-1", "protein_name": "Large ribosomal subunit protein eL18", "gene_name": "RPL18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35268-1", "protein_name": "Large ribosomal subunit protein eL22", "gene_name": "RPL22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83881-1", "protein_name": "Large ribosomal subunit protein eL42", "gene_name": "RPL36A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61353-1", "protein_name": "Large ribosomal subunit protein eL27", "gene_name": "RPL27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNX3-1", "protein_name": "Ribosomal protein uL24-like", "gene_name": "RPL26L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02543-1", "protein_name": "Large ribosomal subunit protein eL20", "gene_name": "RPL18A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40429-1", "protein_name": "Large ribosomal subunit protein uL13", "gene_name": "RPL13A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63173-1", "protein_name": "Large ribosomal subunit protein eL38", "gene_name": "RPL38", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62910-1", "protein_name": "Large ribosomal subunit protein eL32", "gene_name": "RPL32", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39023-1", "protein_name": "Large ribosomal subunit protein uL3", "gene_name": "RPL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18077-1", "protein_name": "Large ribosomal subunit protein eL33", "gene_name": "RPL35A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61254-1", "protein_name": "Large ribosomal subunit protein uL24", "gene_name": "RPL26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84098-1", "protein_name": "Large ribosomal subunit protein eL19", "gene_name": "RPL19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62888-1", "protein_name": "Large ribosomal subunit protein eL30", "gene_name": "RPL30", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83731-1", "protein_name": "Large ribosomal subunit protein eL24", "gene_name": "RPL24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62899-1", "protein_name": "Large ribosomal subunit protein eL31", "gene_name": "RPL31", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62945-1", "protein_name": "Small ribosomal subunit protein eS32", "gene_name": "RPL41", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61927-1", "protein_name": "Large ribosomal subunit protein eL37", "gene_name": "RPL37", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42766-1", "protein_name": "Large ribosomal subunit protein uL29", "gene_name": "RPL35", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05387-1", "protein_name": "Large ribosomal subunit protein P2", "gene_name": "RPLP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92901-1", "protein_name": "Ribosomal protein uL3-like", "gene_name": "RPL3L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46778-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "RPL21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05386-1", "protein_name": "Large ribosomal subunit protein P1", "gene_name": "RPLP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49207-1", "protein_name": "Large ribosomal subunit protein eL34", "gene_name": "RPL34", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62891-1", "protein_name": "Large ribosomal subunit protein eL39", "gene_name": "RPL39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96L21-1", "protein_name": "Ribosomal protein uL16-like", "gene_name": "RPL10L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26373-1", "protein_name": "Large ribosomal subunit protein eL13", "gene_name": "RPL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86US8-1", "protein_name": "Telomerase-binding protein EST1A", "gene_name": "SMG6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYD1-1", "protein_name": "Eukaryotic peptide chain release factor GTP-binding subunit ERF3B", "gene_name": "GSPT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60866-1", "protein_name": "Small ribosomal subunit protein uS10", "gene_name": "RPS20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969Q0-1", "protein_name": "Ribosomal protein eL42-like", "gene_name": "RPL36AL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61247-1", "protein_name": "Small ribosomal subunit protein eS1", "gene_name": "RPS3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62854-1", "protein_name": "Small ribosomal subunit protein eS26", "gene_name": "RPS26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62851-1", "protein_name": "Small ribosomal subunit protein eS25", "gene_name": "RPS25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08865-1", "protein_name": "Small ribosomal subunit protein uS2", "gene_name": "RPSA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62847-1", "protein_name": "Small ribosomal subunit protein eS24", "gene_name": "RPS24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62861-1", "protein_name": "Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein", "gene_name": "FAU", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62241-1", "protein_name": "Small ribosomal subunit protein eS8", "gene_name": "RPS8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62277-1", "protein_name": "Small ribosomal subunit protein uS15", "gene_name": "RPS13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39019-1", "protein_name": "Small ribosomal subunit protein eS19", "gene_name": "RPS19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92540-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG7", "gene_name": "SMG7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPR3-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG5", "gene_name": "SMG5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62269-1", "protein_name": "Small ribosomal subunit protein uS13", "gene_name": "RPS18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H7E2-1", "protein_name": "Tudor domain-containing protein 3", "gene_name": "TDRD3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02878-1", "protein_name": "Large ribosomal subunit protein eL6", "gene_name": "RPL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62273-1", "protein_name": "Small ribosomal subunit protein uS14", "gene_name": "RPS29", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8ND04-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG8", "gene_name": "SMG8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPI6-1", "protein_name": "mRNA-decapping enzyme 1A", "gene_name": "DCP1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42677-1", "protein_name": "Small ribosomal subunit protein eS27", "gene_name": "RPS27", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38919-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "EIF4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61326-1", "protein_name": "Protein mago nashi homolog", "gene_name": "MAGOH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EH5-1", "protein_name": "Ribosomal protein eL39-like 2", "gene_name": "RPL39L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15287-1", "protein_name": "RNA-binding protein with serine-rich domain 1", "gene_name": "RNPS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0W8-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG9", "gene_name": "SMG9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62263-1", "protein_name": "Small ribosomal subunit protein uS11", "gene_name": "RPS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61513-1", "protein_name": "Large ribosomal subunit protein eL43", "gene_name": "RPL37A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18124-1", "protein_name": "Large ribosomal subunit protein uL30", "gene_name": "RPL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZI7-1", "protein_name": "Regulator of nonsense transcripts 3B", "gene_name": "UPF3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15880-1", "protein_name": "Small ribosomal subunit protein uS5", "gene_name": "RPS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62750-1", "protein_name": "Large ribosomal subunit protein uL23", "gene_name": "RPL23A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62280-1", "protein_name": "Small ribosomal subunit protein uS17", "gene_name": "RPS11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62249-1", "protein_name": "Small ribosomal subunit protein uS9", "gene_name": "RPS16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50914-1", "protein_name": "Large ribosomal subunit protein eL14", "gene_name": "RPL14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62906-1", "protein_name": "Large ribosomal subunit protein uL1", "gene_name": "RPL10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23396-1", "protein_name": "Small ribosomal subunit protein uS3", "gene_name": "RPS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63151-1", "protein_name": "Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform", "gene_name": "PPP2R2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A72-1", "protein_name": "Protein mago nashi homolog 2", "gene_name": "MAGOHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62841-1", "protein_name": "Small ribosomal subunit protein uS19", "gene_name": "RPS15", "tax_name": "Human" }, { "uniprot_canonical_ac": "C0HME6-1", "protein_name": "RPL36 alternative reading frame protein", "gene_name": "RPL36", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62829-1", "protein_name": "Large ribosomal subunit protein uL14", "gene_name": "RPL23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32969-1", "protein_name": "Large ribosomal subunit protein uL6", "gene_name": "RPL9P7; RPL9P8; RPL9P9; RPL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30050-1", "protein_name": "Large ribosomal subunit protein uL11", "gene_name": "RPL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q04637-1", "protein_name": "Eukaryotic translation initiation factor 4 gamma 1", "gene_name": "EIF4G1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62266-1", "protein_name": "Small ribosomal subunit protein uS12", "gene_name": "RPS23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46777-1", "protein_name": "Large ribosomal subunit protein uL18", "gene_name": "RPL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96Q15-1", "protein_name": "Serine/threonine-protein kinase SMG1", "gene_name": "SMG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62753-1", "protein_name": "Small ribosomal subunit protein eS6", "gene_name": "RPS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27635-1", "protein_name": "Large ribosomal subunit protein uL16", "gene_name": "RPL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62913-1", "protein_name": "Large ribosomal subunit protein uL5", "gene_name": "RPL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36578-1", "protein_name": "Large ribosomal subunit protein uL4", "gene_name": "RPL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HAU5-1", "protein_name": "Regulator of nonsense transcripts 2", "gene_name": "UPF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5S9-1", "protein_name": "RNA-binding protein 8A", "gene_name": "RBM8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15234-1", "protein_name": "Protein CASC3", "gene_name": "CASC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05388-1", "protein_name": "Large ribosomal subunit protein uL10", "gene_name": "RPLP0", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z5L2-1", "protein_name": "Coiled-coil domain-containing protein R3HCC1L", "gene_name": "R3HCC1L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46779-1", "protein_name": "Large ribosomal subunit protein eL28", "gene_name": "RPL28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62857-1", "protein_name": "Small ribosomal subunit protein eS28", "gene_name": "RPS28", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPJ4-1", "protein_name": "Proline-rich nuclear receptor coactivator 2", "gene_name": "PNRC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15170-1", "protein_name": "Eukaryotic peptide chain release factor GTP-binding subunit ERF3A", "gene_name": "GSPT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62495-1", "protein_name": "Eukaryotic peptide chain release factor subunit 1", "gene_name": "ETF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61313-1", "protein_name": "Large ribosomal subunit protein eL15", "gene_name": "RPL15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62081-1", "protein_name": "Small ribosomal subunit protein eS7", "gene_name": "RPS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71UM5-1", "protein_name": "Ribosomal protein eS27-like", "gene_name": "RPS27L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30153-1", "protein_name": "Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform", "gene_name": "PPP2R1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67775-1", "protein_name": "Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform", "gene_name": "PPP2CA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92900-1", "protein_name": "Regulator of nonsense transcripts 1", "gene_name": "UPF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P18621", "url": "https://www.uniprot.org/uniprotkb/P18621" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 140, "end_pos": 146, "sequence_org": "KPDLQIY", "sequence_mut": "EPDLQIE", "comment": "Alters interaction with the EJC. Loss of interaction with the EJC; when associated with 46-E--E-52.", "evidence": [ { "database": "UniProtKB", "id": "Q86US8", "url": "https://www.uniprot.org/uniprotkb/Q86US8" }, { "database": "PubMed", "id": "20930030", "url": "https://pubmed.ncbi.nlm.nih.gov/20930030" } ], "uniprot_canonical_ac": "Q86US8-1" }, { "start_pos": 46, "end_pos": 52, "sequence_org": "RPDLEIY", "sequence_mut": "EPDLEIE", "comment": "Alters interaction with the EJC. Loss of interaction with the EJC; when associated with 140-E--E-146.", "evidence": [ { "database": "UniProtKB", "id": "Q86US8", "url": "https://www.uniprot.org/uniprotkb/Q86US8" }, { "database": "PubMed", "id": "20930030", "url": "https://pubmed.ncbi.nlm.nih.gov/20930030" } ], "uniprot_canonical_ac": "Q86US8-1" }, { "start_pos": 638, "end_pos": 644, "sequence_org": "RPTQQFY", "sequence_mut": "EPTQQFE", "comment": "Loss of interaction with the EJC.", "evidence": [ { "database": "UniProtKB", "id": "Q9H7E2", "url": "https://www.uniprot.org/uniprotkb/Q9H7E2" }, { "database": "PubMed", "id": "20930030", "url": "https://pubmed.ncbi.nlm.nih.gov/20930030" } ], "uniprot_canonical_ac": "Q9H7E2-1" }, { "start_pos": 14, "end_pos": 20, "sequence_org": "RPDMALY", "sequence_mut": "EPDMALE", "comment": "Loss of interaction with the EJC.", "evidence": [ { "database": "UniProtKB", "id": "Q7Z5L2", "url": "https://www.uniprot.org/uniprotkb/Q7Z5L2" }, { "database": "PubMed", "id": "20930030", "url": "https://pubmed.ncbi.nlm.nih.gov/20930030" } ], "uniprot_canonical_ac": "Q7Z5L2-1" } ], "record_id": "pubmed.20930030", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 118 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Upf1 senses 3'UTR length to potentiate mRNA decay.", "journal": "Cell", "date": "2010", "authors": "Hogg JR, Goff SP", "reference": { "type": "PubMed", "id": "21029861", "url": "https://pubmed.ncbi.nlm.nih.gov/21029861" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P18621-1", "protein_name": "Large ribosomal subunit protein uL22", "gene_name": "RPL17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46776-1", "protein_name": "Large ribosomal subunit protein uL15", "gene_name": "RPL27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46782-1", "protein_name": "Small ribosomal subunit protein uS7", "gene_name": "RPS5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47914-1", "protein_name": "Large ribosomal subunit protein eL29", "gene_name": "RPL29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62244-1", "protein_name": "Small ribosomal subunit protein uS8", "gene_name": "RPS15A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22090-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 1", "gene_name": "RPS4Y1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P5R6-1", "protein_name": "Ribosomal protein eL22-like", "gene_name": "RPL22L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08708-1", "protein_name": "Small ribosomal subunit protein eS17", "gene_name": "RPS17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46783-1", "protein_name": "Small ribosomal subunit protein eS10", "gene_name": "RPS10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62917-1", "protein_name": "Large ribosomal subunit protein uL2", "gene_name": "RPL8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25398-1", "protein_name": "Small ribosomal subunit protein eS12", "gene_name": "RPS12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46781-1", "protein_name": "Small ribosomal subunit protein uS4", "gene_name": "RPS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62424-1", "protein_name": "Large ribosomal subunit protein eL8", "gene_name": "RPL7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62701-1", "protein_name": "Small ribosomal subunit protein eS4, X isoform", "gene_name": "RPS4X", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63220-1", "protein_name": "Small ribosomal subunit protein eS21", "gene_name": "RPS21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TD47-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 2", "gene_name": "RPS4Y2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11940-1", "protein_name": "Polyadenylate-binding protein 1", "gene_name": "PABPC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07020-1", "protein_name": "Large ribosomal subunit protein eL18", "gene_name": "RPL18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35268-1", "protein_name": "Large ribosomal subunit protein eL22", "gene_name": "RPL22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83881-1", "protein_name": "Large ribosomal subunit protein eL42", "gene_name": "RPL36A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61353-1", "protein_name": "Large ribosomal subunit protein eL27", "gene_name": "RPL27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNX3-1", "protein_name": "Ribosomal protein uL24-like", "gene_name": "RPL26L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02543-1", "protein_name": "Large ribosomal subunit protein eL20", "gene_name": "RPL18A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40429-1", "protein_name": "Large ribosomal subunit protein uL13", "gene_name": "RPL13A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63173-1", "protein_name": "Large ribosomal subunit protein eL38", "gene_name": "RPL38", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62910-1", "protein_name": "Large ribosomal subunit protein eL32", "gene_name": "RPL32", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39023-1", "protein_name": "Large ribosomal subunit protein uL3", "gene_name": "RPL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18077-1", "protein_name": "Large ribosomal subunit protein eL33", "gene_name": "RPL35A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61254-1", "protein_name": "Large ribosomal subunit protein uL24", "gene_name": "RPL26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84098-1", "protein_name": "Large ribosomal subunit protein eL19", "gene_name": "RPL19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62888-1", "protein_name": "Large ribosomal subunit protein eL30", "gene_name": "RPL30", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83731-1", "protein_name": "Large ribosomal subunit protein eL24", "gene_name": "RPL24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62899-1", "protein_name": "Large ribosomal subunit protein eL31", "gene_name": "RPL31", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62945-1", "protein_name": "Small ribosomal subunit protein eS32", "gene_name": "RPL41", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61927-1", "protein_name": "Large ribosomal subunit protein eL37", "gene_name": "RPL37", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42766-1", "protein_name": "Large ribosomal subunit protein uL29", "gene_name": "RPL35", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05387-1", "protein_name": "Large ribosomal subunit protein P2", "gene_name": "RPLP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92901-1", "protein_name": "Ribosomal protein uL3-like", "gene_name": "RPL3L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46778-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "RPL21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05386-1", "protein_name": "Large ribosomal subunit protein P1", "gene_name": "RPLP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49207-1", "protein_name": "Large ribosomal subunit protein eL34", "gene_name": "RPL34", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62891-1", "protein_name": "Large ribosomal subunit protein eL39", "gene_name": "RPL39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96L21-1", "protein_name": "Ribosomal protein uL16-like", "gene_name": "RPL10L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26373-1", "protein_name": "Large ribosomal subunit protein eL13", "gene_name": "RPL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYD1-1", "protein_name": "Eukaryotic peptide chain release factor GTP-binding subunit ERF3B", "gene_name": "GSPT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60866-1", "protein_name": "Small ribosomal subunit protein uS10", "gene_name": "RPS20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969Q0-1", "protein_name": "Ribosomal protein eL42-like", "gene_name": "RPL36AL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61247-1", "protein_name": "Small ribosomal subunit protein eS1", "gene_name": "RPS3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62854-1", "protein_name": "Small ribosomal subunit protein eS26", "gene_name": "RPS26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62851-1", "protein_name": "Small ribosomal subunit protein eS25", "gene_name": "RPS25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08865-1", "protein_name": "Small ribosomal subunit protein uS2", "gene_name": "RPSA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62847-1", "protein_name": "Small ribosomal subunit protein eS24", "gene_name": "RPS24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62861-1", "protein_name": "Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein", "gene_name": "FAU", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62241-1", "protein_name": "Small ribosomal subunit protein eS8", "gene_name": "RPS8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62277-1", "protein_name": "Small ribosomal subunit protein uS15", "gene_name": "RPS13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39019-1", "protein_name": "Small ribosomal subunit protein eS19", "gene_name": "RPS19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62269-1", "protein_name": "Small ribosomal subunit protein uS13", "gene_name": "RPS18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02878-1", "protein_name": "Large ribosomal subunit protein eL6", "gene_name": "RPL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62273-1", "protein_name": "Small ribosomal subunit protein uS14", "gene_name": "RPS29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42677-1", "protein_name": "Small ribosomal subunit protein eS27", "gene_name": "RPS27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EH5-1", "protein_name": "Ribosomal protein eL39-like 2", "gene_name": "RPL39L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62263-1", "protein_name": "Small ribosomal subunit protein uS11", "gene_name": "RPS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61513-1", "protein_name": "Large ribosomal subunit protein eL43", "gene_name": "RPL37A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18124-1", "protein_name": "Large ribosomal subunit protein uL30", "gene_name": "RPL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15880-1", "protein_name": "Small ribosomal subunit protein uS5", "gene_name": "RPS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62750-1", "protein_name": "Large ribosomal subunit protein uL23", "gene_name": "RPL23A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62280-1", "protein_name": "Small ribosomal subunit protein uS17", "gene_name": "RPS11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62249-1", "protein_name": "Small ribosomal subunit protein uS9", "gene_name": "RPS16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50914-1", "protein_name": "Large ribosomal subunit protein eL14", "gene_name": "RPL14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62906-1", "protein_name": "Large ribosomal subunit protein uL1", "gene_name": "RPL10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23396-1", "protein_name": "Small ribosomal subunit protein uS3", "gene_name": "RPS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62841-1", "protein_name": "Small ribosomal subunit protein uS19", "gene_name": "RPS15", "tax_name": "Human" }, { "uniprot_canonical_ac": "C0HME6-1", "protein_name": "RPL36 alternative reading frame protein", "gene_name": "RPL36", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62829-1", "protein_name": "Large ribosomal subunit protein uL14", "gene_name": "RPL23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32969-1", "protein_name": "Large ribosomal subunit protein uL6", "gene_name": "RPL9P7; RPL9P8; RPL9P9; RPL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30050-1", "protein_name": "Large ribosomal subunit protein uL11", "gene_name": "RPL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q04637-1", "protein_name": "Eukaryotic translation initiation factor 4 gamma 1", "gene_name": "EIF4G1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62266-1", "protein_name": "Small ribosomal subunit protein uS12", "gene_name": "RPS23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46777-1", "protein_name": "Large ribosomal subunit protein uL18", "gene_name": "RPL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62753-1", "protein_name": "Small ribosomal subunit protein eS6", "gene_name": "RPS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27635-1", "protein_name": "Large ribosomal subunit protein uL16", "gene_name": "RPL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62913-1", "protein_name": "Large ribosomal subunit protein uL5", "gene_name": "RPL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36578-1", "protein_name": "Large ribosomal subunit protein uL4", "gene_name": "RPL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05388-1", "protein_name": "Large ribosomal subunit protein uL10", "gene_name": "RPLP0", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46779-1", "protein_name": "Large ribosomal subunit protein eL28", "gene_name": "RPL28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62857-1", "protein_name": "Small ribosomal subunit protein eS28", "gene_name": "RPS28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15170-1", "protein_name": "Eukaryotic peptide chain release factor GTP-binding subunit ERF3A", "gene_name": "GSPT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62495-1", "protein_name": "Eukaryotic peptide chain release factor subunit 1", "gene_name": "ETF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61313-1", "protein_name": "Large ribosomal subunit protein eL15", "gene_name": "RPL15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62081-1", "protein_name": "Small ribosomal subunit protein eS7", "gene_name": "RPS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71UM5-1", "protein_name": "Ribosomal protein eS27-like", "gene_name": "RPS27L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92900-1", "protein_name": "Regulator of nonsense transcripts 1", "gene_name": "UPF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P18621", "url": "https://www.uniprot.org/uniprotkb/P18621" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.21029861", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 96 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Upf1 ATPase-dependent mRNP disassembly is required for completion of nonsense- mediated mRNA decay.", "journal": "Cell", "date": "2010", "authors": "Franks TM, Singh G, Lykke-Andersen J", "reference": { "type": "PubMed", "id": "21145460", "url": "https://pubmed.ncbi.nlm.nih.gov/21145460" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P18621-1", "protein_name": "Large ribosomal subunit protein uL22", "gene_name": "RPL17", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H1J1-1", "protein_name": "Regulator of nonsense transcripts 3A", "gene_name": "UPF3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46776-1", "protein_name": "Large ribosomal subunit protein uL15", "gene_name": "RPL27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46782-1", "protein_name": "Small ribosomal subunit protein uS7", "gene_name": "RPS5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47914-1", "protein_name": "Large ribosomal subunit protein eL29", "gene_name": "RPL29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62244-1", "protein_name": "Small ribosomal subunit protein uS8", "gene_name": "RPS15A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22090-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 1", "gene_name": "RPS4Y1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P5R6-1", "protein_name": "Ribosomal protein eL22-like", "gene_name": "RPL22L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08708-1", "protein_name": "Small ribosomal subunit protein eS17", "gene_name": "RPS17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46783-1", "protein_name": "Small ribosomal subunit protein eS10", "gene_name": "RPS10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62917-1", "protein_name": "Large ribosomal subunit protein uL2", "gene_name": "RPL8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25398-1", "protein_name": "Small ribosomal subunit protein eS12", "gene_name": "RPS12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46781-1", "protein_name": "Small ribosomal subunit protein uS4", "gene_name": "RPS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62424-1", "protein_name": "Large ribosomal subunit protein eL8", "gene_name": "RPL7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62701-1", "protein_name": "Small ribosomal subunit protein eS4, X isoform", "gene_name": "RPS4X", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63220-1", "protein_name": "Small ribosomal subunit protein eS21", "gene_name": "RPS21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TD47-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 2", "gene_name": "RPS4Y2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11940-1", "protein_name": "Polyadenylate-binding protein 1", "gene_name": "PABPC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07020-1", "protein_name": "Large ribosomal subunit protein eL18", "gene_name": "RPL18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35268-1", "protein_name": "Large ribosomal subunit protein eL22", "gene_name": "RPL22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83881-1", "protein_name": "Large ribosomal subunit protein eL42", "gene_name": "RPL36A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61353-1", "protein_name": "Large ribosomal subunit protein eL27", "gene_name": "RPL27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNX3-1", "protein_name": "Ribosomal protein uL24-like", "gene_name": "RPL26L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02543-1", "protein_name": "Large ribosomal subunit protein eL20", "gene_name": "RPL18A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40429-1", "protein_name": "Large ribosomal subunit protein uL13", "gene_name": "RPL13A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63173-1", "protein_name": "Large ribosomal subunit protein eL38", "gene_name": "RPL38", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62910-1", "protein_name": "Large ribosomal subunit protein eL32", "gene_name": "RPL32", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39023-1", "protein_name": "Large ribosomal subunit protein uL3", "gene_name": "RPL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18077-1", "protein_name": "Large ribosomal subunit protein eL33", "gene_name": "RPL35A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61254-1", "protein_name": "Large ribosomal subunit protein uL24", "gene_name": "RPL26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84098-1", "protein_name": "Large ribosomal subunit protein eL19", "gene_name": "RPL19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62888-1", "protein_name": "Large ribosomal subunit protein eL30", "gene_name": "RPL30", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83731-1", "protein_name": "Large ribosomal subunit protein eL24", "gene_name": "RPL24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62899-1", "protein_name": "Large ribosomal subunit protein eL31", "gene_name": "RPL31", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62945-1", "protein_name": "Small ribosomal subunit protein eS32", "gene_name": "RPL41", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61927-1", "protein_name": "Large ribosomal subunit protein eL37", "gene_name": "RPL37", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42766-1", "protein_name": "Large ribosomal subunit protein uL29", "gene_name": "RPL35", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05387-1", "protein_name": "Large ribosomal subunit protein P2", "gene_name": "RPLP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92901-1", "protein_name": "Ribosomal protein uL3-like", "gene_name": "RPL3L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46778-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "RPL21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05386-1", "protein_name": "Large ribosomal subunit protein P1", "gene_name": "RPLP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49207-1", "protein_name": "Large ribosomal subunit protein eL34", "gene_name": "RPL34", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62891-1", "protein_name": "Large ribosomal subunit protein eL39", "gene_name": "RPL39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96L21-1", "protein_name": "Ribosomal protein uL16-like", "gene_name": "RPL10L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26373-1", "protein_name": "Large ribosomal subunit protein eL13", "gene_name": "RPL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86US8-1", "protein_name": "Telomerase-binding protein EST1A", "gene_name": "SMG6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYD1-1", "protein_name": "Eukaryotic peptide chain release factor GTP-binding subunit ERF3B", "gene_name": "GSPT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60866-1", "protein_name": "Small ribosomal subunit protein uS10", "gene_name": "RPS20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969Q0-1", "protein_name": "Ribosomal protein eL42-like", "gene_name": "RPL36AL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61247-1", "protein_name": "Small ribosomal subunit protein eS1", "gene_name": "RPS3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62854-1", "protein_name": "Small ribosomal subunit protein eS26", "gene_name": "RPS26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62851-1", "protein_name": "Small ribosomal subunit protein eS25", "gene_name": "RPS25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08865-1", "protein_name": "Small ribosomal subunit protein uS2", "gene_name": "RPSA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62847-1", "protein_name": "Small ribosomal subunit protein eS24", "gene_name": "RPS24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62861-1", "protein_name": "Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein", "gene_name": "FAU", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62241-1", "protein_name": "Small ribosomal subunit protein eS8", "gene_name": "RPS8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62277-1", "protein_name": "Small ribosomal subunit protein uS15", "gene_name": "RPS13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39019-1", "protein_name": "Small ribosomal subunit protein eS19", "gene_name": "RPS19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92540-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG7", "gene_name": "SMG7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPR3-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG5", "gene_name": "SMG5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62269-1", "protein_name": "Small ribosomal subunit protein uS13", "gene_name": "RPS18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02878-1", "protein_name": "Large ribosomal subunit protein eL6", "gene_name": "RPL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62273-1", "protein_name": "Small ribosomal subunit protein uS14", "gene_name": "RPS29", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8ND04-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG8", "gene_name": "SMG8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPI6-1", "protein_name": "mRNA-decapping enzyme 1A", "gene_name": "DCP1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42677-1", "protein_name": "Small ribosomal subunit protein eS27", "gene_name": "RPS27", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38919-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "EIF4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61326-1", "protein_name": "Protein mago nashi homolog", "gene_name": "MAGOH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EH5-1", "protein_name": "Ribosomal protein eL39-like 2", "gene_name": "RPL39L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15287-1", "protein_name": "RNA-binding protein with serine-rich domain 1", "gene_name": "RNPS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0W8-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG9", "gene_name": "SMG9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62263-1", "protein_name": "Small ribosomal subunit protein uS11", "gene_name": "RPS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61513-1", "protein_name": "Large ribosomal subunit protein eL43", "gene_name": "RPL37A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18124-1", "protein_name": "Large ribosomal subunit protein uL30", "gene_name": "RPL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZI7-1", "protein_name": "Regulator of nonsense transcripts 3B", "gene_name": "UPF3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15880-1", "protein_name": "Small ribosomal subunit protein uS5", "gene_name": "RPS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62750-1", "protein_name": "Large ribosomal subunit protein uL23", "gene_name": "RPL23A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62280-1", "protein_name": "Small ribosomal subunit protein uS17", "gene_name": "RPS11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62249-1", "protein_name": "Small ribosomal subunit protein uS9", "gene_name": "RPS16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50914-1", "protein_name": "Large ribosomal subunit protein eL14", "gene_name": "RPL14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62906-1", "protein_name": "Large ribosomal subunit protein uL1", "gene_name": "RPL10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23396-1", "protein_name": "Small ribosomal subunit protein uS3", "gene_name": "RPS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63151-1", "protein_name": "Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform", "gene_name": "PPP2R2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A72-1", "protein_name": "Protein mago nashi homolog 2", "gene_name": "MAGOHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62841-1", "protein_name": "Small ribosomal subunit protein uS19", "gene_name": "RPS15", "tax_name": "Human" }, { "uniprot_canonical_ac": "C0HME6-1", "protein_name": "RPL36 alternative reading frame protein", "gene_name": "RPL36", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62829-1", "protein_name": "Large ribosomal subunit protein uL14", "gene_name": "RPL23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32969-1", "protein_name": "Large ribosomal subunit protein uL6", "gene_name": "RPL9P7; RPL9P8; RPL9P9; RPL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30050-1", "protein_name": "Large ribosomal subunit protein uL11", "gene_name": "RPL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q04637-1", "protein_name": "Eukaryotic translation initiation factor 4 gamma 1", "gene_name": "EIF4G1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62266-1", "protein_name": "Small ribosomal subunit protein uS12", "gene_name": "RPS23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46777-1", "protein_name": "Large ribosomal subunit protein uL18", "gene_name": "RPL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96Q15-1", "protein_name": "Serine/threonine-protein kinase SMG1", "gene_name": "SMG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62753-1", "protein_name": "Small ribosomal subunit protein eS6", "gene_name": "RPS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27635-1", "protein_name": "Large ribosomal subunit protein uL16", "gene_name": "RPL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62913-1", "protein_name": "Large ribosomal subunit protein uL5", "gene_name": "RPL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36578-1", "protein_name": "Large ribosomal subunit protein uL4", "gene_name": "RPL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HAU5-1", "protein_name": "Regulator of nonsense transcripts 2", "gene_name": "UPF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5S9-1", "protein_name": "RNA-binding protein 8A", "gene_name": "RBM8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15234-1", "protein_name": "Protein CASC3", "gene_name": "CASC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05388-1", "protein_name": "Large ribosomal subunit protein uL10", "gene_name": "RPLP0", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46779-1", "protein_name": "Large ribosomal subunit protein eL28", "gene_name": "RPL28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62857-1", "protein_name": "Small ribosomal subunit protein eS28", "gene_name": "RPS28", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPJ4-1", "protein_name": "Proline-rich nuclear receptor coactivator 2", "gene_name": "PNRC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15170-1", "protein_name": "Eukaryotic peptide chain release factor GTP-binding subunit ERF3A", "gene_name": "GSPT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62495-1", "protein_name": "Eukaryotic peptide chain release factor subunit 1", "gene_name": "ETF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61313-1", "protein_name": "Large ribosomal subunit protein eL15", "gene_name": "RPL15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62081-1", "protein_name": "Small ribosomal subunit protein eS7", "gene_name": "RPS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71UM5-1", "protein_name": "Ribosomal protein eS27-like", "gene_name": "RPS27L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30153-1", "protein_name": "Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform", "gene_name": "PPP2R1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67775-1", "protein_name": "Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform", "gene_name": "PPP2CA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92900-1", "protein_name": "Regulator of nonsense transcripts 1", "gene_name": "UPF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P18621", "url": "https://www.uniprot.org/uniprotkb/P18621" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.21145460", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 116 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Molecular mechanisms for the RNA-dependent ATPase activity of Upf1 and its regulation by Upf2.", "journal": "Molecular cell", "date": "2011", "authors": "Chakrabarti S, Jayachandran U, Bonneau F, Fiorini F, Basquin C, Domcke S, Le Hir H, Conti E", "reference": { "type": "PubMed", "id": "21419344", "url": "https://pubmed.ncbi.nlm.nih.gov/21419344" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P18621-1", "protein_name": "Large ribosomal subunit protein uL22", "gene_name": "RPL17", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H1J1-1", "protein_name": "Regulator of nonsense transcripts 3A", "gene_name": "UPF3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46776-1", "protein_name": "Large ribosomal subunit protein uL15", "gene_name": "RPL27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46782-1", "protein_name": "Small ribosomal subunit protein uS7", "gene_name": "RPS5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47914-1", "protein_name": "Large ribosomal subunit protein eL29", "gene_name": "RPL29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62244-1", "protein_name": "Small ribosomal subunit protein uS8", "gene_name": "RPS15A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22090-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 1", "gene_name": "RPS4Y1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P5R6-1", "protein_name": "Ribosomal protein eL22-like", "gene_name": "RPL22L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08708-1", "protein_name": "Small ribosomal subunit protein eS17", "gene_name": "RPS17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46783-1", "protein_name": "Small ribosomal subunit protein eS10", "gene_name": "RPS10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62917-1", "protein_name": "Large ribosomal subunit protein uL2", "gene_name": "RPL8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25398-1", "protein_name": "Small ribosomal subunit protein eS12", "gene_name": "RPS12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46781-1", "protein_name": "Small ribosomal subunit protein uS4", "gene_name": "RPS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62424-1", "protein_name": "Large ribosomal subunit protein eL8", "gene_name": "RPL7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62701-1", "protein_name": "Small ribosomal subunit protein eS4, X isoform", "gene_name": "RPS4X", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63220-1", "protein_name": "Small ribosomal subunit protein eS21", "gene_name": "RPS21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TD47-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 2", "gene_name": "RPS4Y2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11940-1", "protein_name": "Polyadenylate-binding protein 1", "gene_name": "PABPC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07020-1", "protein_name": "Large ribosomal subunit protein eL18", "gene_name": "RPL18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35268-1", "protein_name": "Large ribosomal subunit protein eL22", "gene_name": "RPL22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83881-1", "protein_name": "Large ribosomal subunit protein eL42", "gene_name": "RPL36A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61353-1", "protein_name": "Large ribosomal subunit protein eL27", "gene_name": "RPL27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNX3-1", "protein_name": "Ribosomal protein uL24-like", "gene_name": "RPL26L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02543-1", "protein_name": "Large ribosomal subunit protein eL20", "gene_name": "RPL18A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40429-1", "protein_name": "Large ribosomal subunit protein uL13", "gene_name": "RPL13A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63173-1", "protein_name": "Large ribosomal subunit protein eL38", "gene_name": "RPL38", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62910-1", "protein_name": "Large ribosomal subunit protein eL32", "gene_name": "RPL32", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39023-1", "protein_name": "Large ribosomal subunit protein uL3", "gene_name": "RPL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18077-1", "protein_name": "Large ribosomal subunit protein eL33", "gene_name": "RPL35A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61254-1", "protein_name": "Large ribosomal subunit protein uL24", "gene_name": "RPL26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84098-1", "protein_name": "Large ribosomal subunit protein eL19", "gene_name": "RPL19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62888-1", "protein_name": "Large ribosomal subunit protein eL30", "gene_name": "RPL30", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83731-1", "protein_name": "Large ribosomal subunit protein eL24", "gene_name": "RPL24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62899-1", "protein_name": "Large ribosomal subunit protein eL31", "gene_name": "RPL31", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62945-1", "protein_name": "Small ribosomal subunit protein eS32", "gene_name": "RPL41", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61927-1", "protein_name": "Large ribosomal subunit protein eL37", "gene_name": "RPL37", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42766-1", "protein_name": "Large ribosomal subunit protein uL29", "gene_name": "RPL35", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05387-1", "protein_name": "Large ribosomal subunit protein P2", "gene_name": "RPLP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92901-1", "protein_name": "Ribosomal protein uL3-like", "gene_name": "RPL3L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46778-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "RPL21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05386-1", "protein_name": "Large ribosomal subunit protein P1", "gene_name": "RPLP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49207-1", "protein_name": "Large ribosomal subunit protein eL34", "gene_name": "RPL34", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62891-1", "protein_name": "Large ribosomal subunit protein eL39", "gene_name": "RPL39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96L21-1", "protein_name": "Ribosomal protein uL16-like", "gene_name": "RPL10L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26373-1", "protein_name": "Large ribosomal subunit protein eL13", "gene_name": "RPL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30771-1", "protein_name": "ATP-dependent helicase NAM7", "gene_name": "NAM7", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q86US8-1", "protein_name": "Telomerase-binding protein EST1A", "gene_name": "SMG6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYD1-1", "protein_name": "Eukaryotic peptide chain release factor GTP-binding subunit ERF3B", "gene_name": "GSPT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60866-1", "protein_name": "Small ribosomal subunit protein uS10", "gene_name": "RPS20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969Q0-1", "protein_name": "Ribosomal protein eL42-like", "gene_name": "RPL36AL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61247-1", "protein_name": "Small ribosomal subunit protein eS1", "gene_name": "RPS3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62854-1", "protein_name": "Small ribosomal subunit protein eS26", "gene_name": "RPS26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62851-1", "protein_name": "Small ribosomal subunit protein eS25", "gene_name": "RPS25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08865-1", "protein_name": "Small ribosomal subunit protein uS2", "gene_name": "RPSA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62847-1", "protein_name": "Small ribosomal subunit protein eS24", "gene_name": "RPS24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62861-1", "protein_name": "Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein", "gene_name": "FAU", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62241-1", "protein_name": "Small ribosomal subunit protein eS8", "gene_name": "RPS8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62277-1", "protein_name": "Small ribosomal subunit protein uS15", "gene_name": "RPS13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39019-1", "protein_name": "Small ribosomal subunit protein eS19", "gene_name": "RPS19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92540-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG7", "gene_name": "SMG7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPR3-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG5", "gene_name": "SMG5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62269-1", "protein_name": "Small ribosomal subunit protein uS13", "gene_name": "RPS18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02878-1", "protein_name": "Large ribosomal subunit protein eL6", "gene_name": "RPL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62273-1", "protein_name": "Small ribosomal subunit protein uS14", "gene_name": "RPS29", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8ND04-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG8", "gene_name": "SMG8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPI6-1", "protein_name": "mRNA-decapping enzyme 1A", "gene_name": "DCP1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42677-1", "protein_name": "Small ribosomal subunit protein eS27", "gene_name": "RPS27", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38919-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "EIF4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61326-1", "protein_name": "Protein mago nashi homolog", "gene_name": "MAGOH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EH5-1", "protein_name": "Ribosomal protein eL39-like 2", "gene_name": "RPL39L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15287-1", "protein_name": "RNA-binding protein with serine-rich domain 1", "gene_name": "RNPS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0W8-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG9", "gene_name": "SMG9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62263-1", "protein_name": "Small ribosomal subunit protein uS11", "gene_name": "RPS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61513-1", "protein_name": "Large ribosomal subunit protein eL43", "gene_name": "RPL37A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18124-1", "protein_name": "Large ribosomal subunit protein uL30", "gene_name": "RPL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZI7-1", "protein_name": "Regulator of nonsense transcripts 3B", "gene_name": "UPF3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15880-1", "protein_name": "Small ribosomal subunit protein uS5", "gene_name": "RPS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62750-1", "protein_name": "Large ribosomal subunit protein uL23", "gene_name": "RPL23A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62280-1", "protein_name": "Small ribosomal subunit protein uS17", "gene_name": "RPS11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62249-1", "protein_name": "Small ribosomal subunit protein uS9", "gene_name": "RPS16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50914-1", "protein_name": "Large ribosomal subunit protein eL14", "gene_name": "RPL14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62906-1", "protein_name": "Large ribosomal subunit protein uL1", "gene_name": "RPL10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23396-1", "protein_name": "Small ribosomal subunit protein uS3", "gene_name": "RPS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63151-1", "protein_name": "Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform", "gene_name": "PPP2R2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A72-1", "protein_name": "Protein mago nashi homolog 2", "gene_name": "MAGOHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62841-1", "protein_name": "Small ribosomal subunit protein uS19", "gene_name": "RPS15", "tax_name": "Human" }, { "uniprot_canonical_ac": "C0HME6-1", "protein_name": "RPL36 alternative reading frame protein", "gene_name": "RPL36", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62829-1", "protein_name": "Large ribosomal subunit protein uL14", "gene_name": "RPL23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32969-1", "protein_name": "Large ribosomal subunit protein uL6", "gene_name": "RPL9P7; RPL9P8; RPL9P9; RPL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30050-1", "protein_name": "Large ribosomal subunit protein uL11", "gene_name": "RPL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q04637-1", "protein_name": "Eukaryotic translation initiation factor 4 gamma 1", "gene_name": "EIF4G1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62266-1", "protein_name": "Small ribosomal subunit protein uS12", "gene_name": "RPS23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46777-1", "protein_name": "Large ribosomal subunit protein uL18", "gene_name": "RPL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96Q15-1", "protein_name": "Serine/threonine-protein kinase SMG1", "gene_name": "SMG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62753-1", "protein_name": "Small ribosomal subunit protein eS6", "gene_name": "RPS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27635-1", "protein_name": "Large ribosomal subunit protein uL16", "gene_name": "RPL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62913-1", "protein_name": "Large ribosomal subunit protein uL5", "gene_name": "RPL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36578-1", "protein_name": "Large ribosomal subunit protein uL4", "gene_name": "RPL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HAU5-1", "protein_name": "Regulator of nonsense transcripts 2", "gene_name": "UPF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5S9-1", "protein_name": "RNA-binding protein 8A", "gene_name": "RBM8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15234-1", "protein_name": "Protein CASC3", "gene_name": "CASC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05388-1", "protein_name": "Large ribosomal subunit protein uL10", "gene_name": "RPLP0", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46779-1", "protein_name": "Large ribosomal subunit protein eL28", "gene_name": "RPL28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62857-1", "protein_name": "Small ribosomal subunit protein eS28", "gene_name": "RPS28", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPJ4-1", "protein_name": "Proline-rich nuclear receptor coactivator 2", "gene_name": "PNRC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15170-1", "protein_name": "Eukaryotic peptide chain release factor GTP-binding subunit ERF3A", "gene_name": "GSPT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62495-1", "protein_name": "Eukaryotic peptide chain release factor subunit 1", "gene_name": "ETF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61313-1", "protein_name": "Large ribosomal subunit protein eL15", "gene_name": "RPL15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62081-1", "protein_name": "Small ribosomal subunit protein eS7", "gene_name": "RPS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71UM5-1", "protein_name": "Ribosomal protein eS27-like", "gene_name": "RPS27L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30153-1", "protein_name": "Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform", "gene_name": "PPP2R1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67775-1", "protein_name": "Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform", "gene_name": "PPP2CA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92900-1", "protein_name": "Regulator of nonsense transcripts 1", "gene_name": "UPF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P18621", "url": "https://www.uniprot.org/uniprotkb/P18621" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 192, "end_pos": 192, "sequence_org": "F", "sequence_mut": "E", "comment": "Increases ATPase activity of whole protein, UPF2 does not stimulate ATPase activity. Prevents the CH-rich domain from inhibiting helicase and translocation activities.", "evidence": [ { "database": "UniProtKB", "id": "Q92900", "url": "https://www.uniprot.org/uniprotkb/Q92900" }, { "database": "PubMed", "id": "21419344", "url": "https://pubmed.ncbi.nlm.nih.gov/21419344" }, { "database": "PubMed", "id": "26138914", "url": "https://pubmed.ncbi.nlm.nih.gov/26138914" } ], "uniprot_canonical_ac": "Q92900-1" } ], "record_id": "pubmed.21419344", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 117 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": 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"protein_name": "Small ribosomal subunit protein eS12", "gene_name": "RPS12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46781-1", "protein_name": "Small ribosomal subunit protein uS4", "gene_name": "RPS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62424-1", "protein_name": "Large ribosomal subunit protein eL8", "gene_name": "RPL7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62701-1", "protein_name": "Small ribosomal subunit protein eS4, X isoform", "gene_name": "RPS4X", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01085-1", "protein_name": "Nucleolysin TIAR", "gene_name": "TIAL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2T7-1", "protein_name": "Y-box-binding protein 2", "gene_name": "YBX2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WWY3-1", "protein_name": "U4/U6 small nuclear ribonucleoprotein Prp31", "gene_name": "PRPF31", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0L4-1", "protein_name": "Cleavage stimulation factor 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"uniprot_canonical_ac": "P11940-1", "protein_name": "Polyadenylate-binding protein 1", "gene_name": "PABPC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55769-1", "protein_name": "NHP2-like protein 1", "gene_name": "SNU13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKD2-1", "protein_name": "mRNA turnover protein 4 homolog", "gene_name": "MRTO4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07020-1", "protein_name": "Large ribosomal subunit protein eL18", "gene_name": "RPL18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35268-1", "protein_name": "Large ribosomal subunit protein eL22", "gene_name": "RPL22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61353-1", "protein_name": "Large ribosomal subunit protein eL27", "gene_name": "RPL27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02543-1", "protein_name": "Large ribosomal subunit protein eL20", "gene_name": "RPL18A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35658-1", "protein_name": 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"gene_name": "RPLP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46778-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "RPL21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05386-1", "protein_name": "Large ribosomal subunit protein P1", "gene_name": "RPLP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15233-1", "protein_name": "Non-POU domain-containing octamer-binding protein", "gene_name": "NONO", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62995-1", "protein_name": "Transformer-2 protein homolog beta", "gene_name": "TRA2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UMS4-1", "protein_name": "Pre-mRNA-processing factor 19", "gene_name": "PRPF19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07955-1", "protein_name": "Serine/arginine-rich splicing factor 1", "gene_name": "SRSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BW27-1", "protein_name": "Nuclear pore complex protein Nup85", "gene_name": "NUP85", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26373-1", "protein_name": "Large ribosomal subunit protein eL13", "gene_name": "RPL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NR30-1", "protein_name": "Nucleolar RNA helicase 2", "gene_name": "DDX21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07237-1", "protein_name": "Protein disulfide-isomerase", "gene_name": "P4HB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BQ39-1", "protein_name": "ATP-dependent RNA helicase DDX50", "gene_name": "DDX50", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0C0S5-1", "protein_name": "Histone H2A.Z", "gene_name": "H2AZ1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04264-1", "protein_name": "Keratin, type II cytoskeletal 1", "gene_name": "KRT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17066-1", "protein_name": "Heat shock 70 kDa protein 6", "gene_name": "HSPA6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23246-1", "protein_name": "Splicing factor, proline- and glutamine-rich", "gene_name": "SFPQ", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15029-1", "protein_name": "116 kDa U5 small nuclear ribonucleoprotein component", "gene_name": "EFTUD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12874-1", "protein_name": "Splicing factor 3A subunit 3", "gene_name": "SF3A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60684-1", "protein_name": "Importin subunit alpha-7", "gene_name": "KPNA6", "tax_name": "Human" }, { "uniprot_canonical_ac": "A9QM74-1", "protein_name": "Importin subunit alpha-8", "gene_name": "KPNA7", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75643-1", "protein_name": "U5 small nuclear ribonucleoprotein 200 kDa helicase", "gene_name": "SNRNP200", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09651-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A1", "gene_name": "HNRNPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61247-1", "protein_name": "Small ribosomal subunit protein eS1", "gene_name": "RPS3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96PK6-1", "protein_name": "RNA-binding protein 14", "gene_name": "RBM14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96DH6-1", "protein_name": "RNA-binding protein Musashi homolog 2", "gene_name": "MSI2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15504-1", "protein_name": "Nucleoporin NUP42", "gene_name": "NUP42", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKX7-1", "protein_name": "Nuclear pore complex protein Nup50", "gene_name": "NUP50", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57740-1", "protein_name": "Nuclear pore complex protein Nup107", "gene_name": "NUP107", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20700-1", "protein_name": "Lamin-B1", "gene_name": "LMNB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUM0-1", "protein_name": "Nuclear pore complex protein Nup133", "gene_name": "NUP133", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51970-1", "protein_name": "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8", "gene_name": "NDUFA8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFH3-1", "protein_name": "Nucleoporin Nup43", "gene_name": "NUP43", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKK6-1", "protein_name": "NTF2-related export protein 1", "gene_name": "NXT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84103-1", "protein_name": "Serine/arginine-rich splicing factor 3", "gene_name": "SRSF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62277-1", "protein_name": "Small ribosomal subunit protein uS15", "gene_name": "RPS13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39019-1", "protein_name": "Small ribosomal subunit protein eS19", "gene_name": "RPS19", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15460-1", "protein_name": "Prolyl 4-hydroxylase subunit alpha-2", "gene_name": "P4HA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EE3-2", "protein_name": "Nucleoporin SEH1", "gene_name": "SEH1L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TEM1-1", "protein_name": "Nuclear pore membrane glycoprotein 210", "gene_name": "NUP210", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55735-1", "protein_name": "Protein SEC13 homolog", "gene_name": "SEC13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H7B2-1", "protein_name": "Ribosome production factor 2 homolog", "gene_name": "RPF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02878-1", "protein_name": "Large ribosomal subunit protein eL6", "gene_name": "RPL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13151-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A0", "gene_name": "HNRNPA0", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99729-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A/B", "gene_name": "HNRNPAB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84243-1", "protein_name": "Histone H3.3", "gene_name": "H3-3A; H3-3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q00839-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein U", "gene_name": "HNRNPU", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92945-1", "protein_name": "Far upstream element-binding protein 2", "gene_name": "KHSRP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBS4-1", "protein_name": "DnaJ homolog subfamily B member 11", "gene_name": "DNAJB11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38646-1", "protein_name": "Stress-70 protein, mitochondrial", "gene_name": "HSPA9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22087-1", "protein_name": "rRNA 2'-O-methyltransferase fibrillarin", "gene_name": "FBL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08729-1", "protein_name": "Keratin, type II cytoskeletal 7", "gene_name": "KRT7", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75694-1", "protein_name": "Nuclear pore complex protein Nup155", "gene_name": "NUP155", "tax_name": "Human" }, { "uniprot_canonical_ac": "P34931-1", "protein_name": "Heat shock 70 kDa protein 1-like", "gene_name": "HSPA1L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P54652-1", "protein_name": "Heat shock-related 70 kDa protein 2", "gene_name": "HSPA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13283-1", "protein_name": "Ras GTPase-activating protein-binding protein 1", "gene_name": "G3BP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUJ2-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein U-like protein 1", "gene_name": "HNRNPUL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBU9-1", "protein_name": "Nuclear RNA export factor 1", "gene_name": "NXF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHX1-1", "protein_name": "Poly(U)-binding-splicing factor PUF60", "gene_name": "PUF60", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42677-1", "protein_name": "Small ribosomal subunit protein eS27", "gene_name": "RPS27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPJ8-1", "protein_name": "NTF2-related export protein 2", "gene_name": "NXT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q04695-1", "protein_name": "Keratin, type I cytoskeletal 17", "gene_name": "KRT17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38919-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "EIF4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75400-1", "protein_name": "Pre-mRNA-processing factor 40 homolog A", "gene_name": "PRPF40A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62316-1", "protein_name": "Small nuclear ribonucleoprotein Sm D2", "gene_name": "SNRPD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00629-1", "protein_name": "Importin subunit alpha-3", "gene_name": "KPNA4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12996-1", "protein_name": "Cleavage stimulation factor subunit 3", "gene_name": "CSTF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96SI9-1", "protein_name": "Spermatid perinuclear RNA-binding protein", "gene_name": "STRBP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62263-1", "protein_name": "Small ribosomal subunit protein uS11", "gene_name": "RPS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61513-1", "protein_name": "Large ribosomal subunit protein eL43", "gene_name": "RPL37A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2TAY7-1", "protein_name": "WD40 repeat-containing protein SMU1", "gene_name": "SMU1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08559-1", "protein_name": "Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial", "gene_name": "PDHA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18124-1", "protein_name": "Large ribosomal subunit protein uL30", "gene_name": "RPL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFH5-1", "protein_name": "Nucleoporin NUP35", "gene_name": "NUP35", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z3Y7-1", "protein_name": "Keratin, type I cytoskeletal 28", "gene_name": "KRT28", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCD5-1", "protein_name": "Nuclear receptor coactivator 5", "gene_name": "NCOA5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96KR1-1", "protein_name": "Zinc finger RNA-binding protein", "gene_name": "ZFR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3B7-1", "protein_name": "Large ribosomal subunit protein uL11m", "gene_name": "MRPL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15880-1", "protein_name": "Small ribosomal subunit protein uS5", "gene_name": "RPS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42166-1", "protein_name": "Lamina-associated polypeptide 2, isoform alpha", "gene_name": "TMPO", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62249-1", "protein_name": "Small ribosomal subunit protein uS9", "gene_name": "RPS16", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96AG4-1", "protein_name": "Leucine-rich repeat-containing protein 59", "gene_name": "LRRC59", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P2Q9-1", "protein_name": "Pre-mRNA-processing-splicing factor 8", "gene_name": "PRPF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02283-1", "protein_name": "Histone H2B", "gene_name": "His2B:CG17949; His2B:CG33868; His2B:CG33870; His2B:CG33872; His2B:CG33874; His2B:CG33876; His2B:CG33878; His2B:CG33880; His2B:CG33882; His2B:CG33884; His2B:CG33886; His2B:CG33888; His2B:CG33890; His2B:CG33892; His2B:CG33894; His2B:CG33896; His2B:CG33898; His2B:CG33900; His2B:CG33902; His2B:CG33904; His2B:CG33906; His2B:CG33908; His2B:CG33910; His2B", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "O14980-1", "protein_name": "Exportin-1", "gene_name": "XPO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07910-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins C1/C2", "gene_name": "HNRNPC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04792-1", "protein_name": "Heat shock protein beta-1", "gene_name": "HSPB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08670-1", "protein_name": "Vimentin", "gene_name": "VIM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02545-1", "protein_name": "Prelamin-A/C", "gene_name": "LMNA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06748-1", "protein_name": "Nucleophosmin", "gene_name": "NPM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23396-1", "protein_name": "Small ribosomal subunit protein uS3", "gene_name": "RPS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11142-1", "protein_name": "Heat shock cognate 71 kDa protein", "gene_name": "HSPA8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25705-1", "protein_name": "ATP synthase F(1) complex subunit alpha, mitochondrial", "gene_name": "ATP5F1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68104-1", "protein_name": "Elongation factor 1-alpha 1", "gene_name": "EEF1A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62805-1", "protein_name": "Histone H4", "gene_name": "H4C11; H4C12; H4C13; H4C14; H4C15; H4C16; H4C1; H4C2; H4C3; H4C4; H4C5; H4C6; H4C8; H4C9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19338-1", "protein_name": "Nucleolin", "gene_name": "NCL", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43390-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein R", "gene_name": "HNRNPR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BVL2-1", "protein_name": "Nucleoporin p58/p45", "gene_name": "NUP58", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52597-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein F", "gene_name": "HNRNPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60506-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein Q", "gene_name": "SYNCRIP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12906-1", "protein_name": "Interleukin enhancer-binding factor 3", "gene_name": "ILF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92734-1", "protein_name": "Protein TFG", "gene_name": "TFG", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08211-1", "protein_name": "ATP-dependent RNA helicase A", "gene_name": "DHX9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07666-1", "protein_name": "KH domain-containing, RNA-binding, signal transduction-associated protein 1", "gene_name": "KHDRBS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52272-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein M", "gene_name": "HNRNPM", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01081-1", "protein_name": "Splicing factor U2AF 35 kDa subunit", "gene_name": "U2AF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52292-1", "protein_name": "Importin subunit alpha-1", "gene_name": "KPNA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62807-1", "protein_name": "Histone H2B type 1-C/E/F/G/I", "gene_name": "H2BC10; H2BC4; H2BC6; H2BC7; H2BC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26368-1", "protein_name": "Splicing factor U2AF 65 kDa subunit", "gene_name": "U2AF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62306-1", "protein_name": "Small nuclear ribonucleoprotein F", "gene_name": "SNRPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62318-1", "protein_name": "Small nuclear ribonucleoprotein Sm D3", "gene_name": "SNRPD3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15149-1", "protein_name": "Plectin", "gene_name": "PLEC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UN86-1", "protein_name": "Ras GTPase-activating protein-binding protein 2", "gene_name": "G3BP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96I24-1", "protein_name": "Far upstream element-binding protein 3", "gene_name": "FUBP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15328-1", "protein_name": "Folate receptor alpha", "gene_name": "FOLR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62841-1", "protein_name": "Small ribosomal subunit protein uS19", "gene_name": "RPS15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92973-1", "protein_name": "Transportin-1", "gene_name": "TNPO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "C0HME6-1", "protein_name": "RPL36 alternative reading frame protein", "gene_name": "RPL36", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05048-1", "protein_name": "Cleavage stimulation factor subunit 1", "gene_name": "CSTF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62829-1", "protein_name": "Large ribosomal subunit protein uL14", "gene_name": "RPL23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05783-1", "protein_name": "Keratin, type I cytoskeletal 18", "gene_name": "KRT18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15428-1", "protein_name": "Splicing factor 3A subunit 2", "gene_name": "SF3A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15427-1", "protein_name": "Splicing factor 3B subunit 4", "gene_name": "SF3B4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49792-1", "protein_name": "E3 SUMO-protein ligase RanBP2", "gene_name": "RANBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32969-1", "protein_name": "Large ribosomal subunit protein uL6", "gene_name": "RPL9P7; RPL9P8; RPL9P9; RPL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95678-1", "protein_name": "Keratin, type II cytoskeletal 75", "gene_name": "KRT75", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10809-1", "protein_name": "60 kDa heat shock protein, mitochondrial", "gene_name": "HSPD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04004-1", "protein_name": "Vitronectin", "gene_name": "VTN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0D6-1", "protein_name": "5'-3' exoribonuclease 2", "gene_name": "XRN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30050-1", "protein_name": "Large ribosomal subunit protein uL11", "gene_name": "RPL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13435-1", "protein_name": "Splicing factor 3B subunit 2", "gene_name": "SF3B2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62266-1", "protein_name": "Small ribosomal subunit protein uS12", "gene_name": "RPS23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46777-1", "protein_name": "Large ribosomal subunit protein uL18", "gene_name": "RPL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15459-1", "protein_name": "Splicing factor 3A subunit 1", "gene_name": "SF3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62304-1", "protein_name": "Small nuclear ribonucleoprotein E", "gene_name": "SNRPE", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23527-1", "protein_name": "Histone H2B type 1-O", "gene_name": "H2BC17", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15294-1", "protein_name": "UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit", "gene_name": "OGT", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02539-1", "protein_name": "Histone H1.1", "gene_name": "H1-1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13310-1", "protein_name": "Polyadenylate-binding protein 4", "gene_name": "PABPC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99567-1", "protein_name": "Nuclear pore complex protein Nup88", "gene_name": "NUP88", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14671-1", "protein_name": "Pumilio homolog 1", "gene_name": "PUM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15434-1", "protein_name": "RNA-binding motif, single-stranded-interacting protein 2", "gene_name": "RBMS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51991-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A3", "gene_name": "HNRNPA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14103-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein D0", "gene_name": "HNRNPD", "tax_name": "Human" }, { "uniprot_canonical_ac": "P43243-1", "protein_name": "Matrin-3", "gene_name": "MATR3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31943-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein H", "gene_name": "HNRNPH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60812-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein C-like 1", "gene_name": "HNRNPCL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55795-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein H2", "gene_name": "HNRNPH2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62913-1", "protein_name": "Large ribosomal subunit protein uL5", "gene_name": "RPL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13674-1", "protein_name": "Prolyl 4-hydroxylase subunit alpha-1", "gene_name": "P4HA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36578-1", "protein_name": "Large ribosomal subunit protein uL4", "gene_name": "RPL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96DI7-1", "protein_name": "U5 small nuclear ribonucleoprotein 40 kDa protein", "gene_name": "SNRNP40", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15084-1", "protein_name": "Protein disulfide-isomerase A6", "gene_name": "PDIA6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BQE3-1", "protein_name": "Tubulin alpha-1C chain", "gene_name": "TUBA1C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q04837-1", "protein_name": "Single-stranded DNA-binding protein, mitochondrial", "gene_name": "SSBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5T6F2-1", "protein_name": "Ubiquitin-associated protein 2", "gene_name": "UBAP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52948-1", "protein_name": "Nuclear pore complex protein Nup98-Nup96", "gene_name": "NUP98", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15393-1", "protein_name": "Splicing factor 3B subunit 3", "gene_name": "SF3B3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78406-1", "protein_name": "mRNA export factor RAE1", "gene_name": "RAE1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFH4-1", "protein_name": "Nucleoporin Nup37", "gene_name": "NUP37", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14157-2", "protein_name": "Ubiquitin-associated protein 2-like", "gene_name": "UBAP2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43809-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 5", "gene_name": "NUDT21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15293-1", "protein_name": "Reticulocalbin-1", "gene_name": "RCN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75531-1", "protein_name": "Barrier-to-autointegration factor", "gene_name": "BANF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05388-1", "protein_name": "Large ribosomal subunit protein uL10", "gene_name": "RPLP0", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05787-1", 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"count": 928 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 928 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 928 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 927 }, { "field": "exact_o_linked_sites", "count": 927 }, { "field": "exact_o_linked_glycan_sites", "count": 927 }, { "field": "exact_o_linked_glycans", "count": 1 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl", "filter_code", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Structural basis of the PNRC2-mediated link between mrna surveillance and decapping.", "journal": "Structure (London, England : 1993)", "date": "2012", "authors": "Lai T, Cho H, Liu Z, Bowler MW, Piao S, Parker R, Kim YK, Song H", "reference": { "type": "PubMed", "id": "23085078", "url": "https://pubmed.ncbi.nlm.nih.gov/23085078" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P18621-1", "protein_name": "Large ribosomal subunit protein uL22", "gene_name": "RPL17", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H1J1-1", "protein_name": "Regulator of nonsense transcripts 3A", "gene_name": "UPF3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46776-1", "protein_name": "Large ribosomal subunit protein uL15", "gene_name": "RPL27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46782-1", "protein_name": "Small ribosomal subunit protein uS7", "gene_name": "RPS5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47914-1", "protein_name": "Large ribosomal subunit protein eL29", "gene_name": "RPL29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62244-1", "protein_name": "Small ribosomal subunit protein uS8", "gene_name": "RPS15A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22090-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 1", "gene_name": "RPS4Y1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P5R6-1", "protein_name": "Ribosomal protein eL22-like", "gene_name": "RPL22L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08708-1", "protein_name": "Small ribosomal subunit protein eS17", "gene_name": "RPS17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46783-1", "protein_name": "Small ribosomal subunit protein eS10", "gene_name": "RPS10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62917-1", "protein_name": "Large ribosomal subunit protein uL2", "gene_name": "RPL8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25398-1", "protein_name": "Small ribosomal subunit protein eS12", "gene_name": "RPS12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46781-1", "protein_name": "Small ribosomal subunit protein uS4", "gene_name": "RPS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62424-1", "protein_name": "Large ribosomal subunit protein eL8", "gene_name": "RPL7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62701-1", "protein_name": "Small ribosomal subunit protein eS4, X isoform", "gene_name": "RPS4X", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63220-1", "protein_name": "Small ribosomal subunit protein eS21", "gene_name": "RPS21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TD47-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 2", "gene_name": "RPS4Y2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11940-1", "protein_name": "Polyadenylate-binding protein 1", "gene_name": "PABPC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07020-1", "protein_name": "Large ribosomal subunit protein eL18", "gene_name": "RPL18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35268-1", "protein_name": "Large ribosomal subunit protein eL22", "gene_name": "RPL22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83881-1", "protein_name": "Large ribosomal subunit protein eL42", "gene_name": "RPL36A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61353-1", "protein_name": "Large ribosomal subunit protein eL27", "gene_name": "RPL27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNX3-1", "protein_name": "Ribosomal protein uL24-like", "gene_name": "RPL26L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02543-1", "protein_name": "Large ribosomal subunit protein eL20", "gene_name": "RPL18A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40429-1", "protein_name": "Large ribosomal subunit protein uL13", "gene_name": "RPL13A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63173-1", "protein_name": "Large ribosomal subunit protein eL38", "gene_name": "RPL38", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62910-1", "protein_name": "Large ribosomal subunit protein eL32", "gene_name": "RPL32", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39023-1", "protein_name": "Large ribosomal subunit protein uL3", "gene_name": "RPL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18077-1", "protein_name": "Large ribosomal subunit protein eL33", "gene_name": "RPL35A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61254-1", "protein_name": "Large ribosomal subunit protein uL24", "gene_name": "RPL26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84098-1", "protein_name": "Large ribosomal subunit protein eL19", "gene_name": "RPL19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62888-1", "protein_name": "Large ribosomal subunit protein eL30", "gene_name": "RPL30", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83731-1", "protein_name": "Large ribosomal subunit protein eL24", "gene_name": "RPL24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62899-1", "protein_name": "Large ribosomal subunit protein eL31", "gene_name": "RPL31", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62945-1", "protein_name": "Small ribosomal subunit protein eS32", "gene_name": "RPL41", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61927-1", "protein_name": "Large ribosomal subunit protein eL37", "gene_name": "RPL37", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42766-1", "protein_name": "Large ribosomal subunit protein uL29", "gene_name": "RPL35", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05387-1", "protein_name": "Large ribosomal subunit protein P2", "gene_name": "RPLP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92901-1", "protein_name": "Ribosomal protein uL3-like", "gene_name": "RPL3L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46778-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "RPL21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05386-1", "protein_name": "Large ribosomal subunit protein P1", "gene_name": "RPLP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49207-1", "protein_name": "Large ribosomal subunit protein eL34", "gene_name": "RPL34", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62891-1", "protein_name": "Large ribosomal subunit protein eL39", "gene_name": "RPL39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96L21-1", "protein_name": "Ribosomal protein uL16-like", "gene_name": "RPL10L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26373-1", "protein_name": "Large ribosomal subunit protein eL13", "gene_name": "RPL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86US8-1", "protein_name": "Telomerase-binding protein EST1A", "gene_name": "SMG6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYD1-1", "protein_name": "Eukaryotic peptide chain release factor GTP-binding subunit ERF3B", "gene_name": "GSPT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60866-1", "protein_name": "Small ribosomal subunit protein uS10", "gene_name": "RPS20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969Q0-1", "protein_name": "Ribosomal protein eL42-like", "gene_name": "RPL36AL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61247-1", "protein_name": "Small ribosomal subunit protein eS1", "gene_name": "RPS3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62854-1", "protein_name": "Small ribosomal subunit protein eS26", "gene_name": "RPS26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62851-1", "protein_name": "Small ribosomal subunit protein eS25", "gene_name": "RPS25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08865-1", "protein_name": "Small ribosomal subunit protein uS2", "gene_name": "RPSA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62847-1", "protein_name": "Small ribosomal subunit protein eS24", "gene_name": "RPS24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62861-1", "protein_name": "Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein", "gene_name": "FAU", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62241-1", "protein_name": "Small ribosomal subunit protein eS8", "gene_name": "RPS8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62277-1", "protein_name": "Small ribosomal subunit protein uS15", "gene_name": "RPS13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39019-1", "protein_name": "Small ribosomal subunit protein eS19", "gene_name": "RPS19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92540-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG7", "gene_name": "SMG7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPR3-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG5", "gene_name": "SMG5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62269-1", "protein_name": "Small ribosomal subunit protein uS13", "gene_name": "RPS18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02878-1", "protein_name": "Large ribosomal subunit protein eL6", "gene_name": "RPL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62273-1", "protein_name": "Small ribosomal subunit protein uS14", "gene_name": "RPS29", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8ND04-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG8", "gene_name": "SMG8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPI6-1", "protein_name": "mRNA-decapping enzyme 1A", "gene_name": "DCP1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42677-1", "protein_name": "Small ribosomal subunit protein eS27", "gene_name": "RPS27", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38919-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "EIF4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61326-1", "protein_name": "Protein mago nashi homolog", "gene_name": "MAGOH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EH5-1", "protein_name": "Ribosomal protein eL39-like 2", "gene_name": "RPL39L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15287-1", "protein_name": "RNA-binding protein with serine-rich domain 1", "gene_name": "RNPS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0W8-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG9", "gene_name": "SMG9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62263-1", "protein_name": "Small ribosomal subunit protein uS11", "gene_name": "RPS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61513-1", "protein_name": "Large ribosomal subunit protein eL43", "gene_name": "RPL37A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18124-1", "protein_name": "Large ribosomal subunit protein uL30", "gene_name": "RPL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZI7-1", "protein_name": "Regulator of nonsense transcripts 3B", "gene_name": "UPF3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15880-1", "protein_name": "Small ribosomal subunit protein uS5", "gene_name": "RPS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62750-1", "protein_name": "Large ribosomal subunit protein uL23", "gene_name": "RPL23A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62280-1", "protein_name": "Small ribosomal subunit protein uS17", "gene_name": "RPS11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62249-1", "protein_name": "Small ribosomal subunit protein uS9", "gene_name": "RPS16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50914-1", "protein_name": "Large ribosomal subunit protein eL14", "gene_name": "RPL14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62906-1", "protein_name": "Large ribosomal subunit protein uL1", "gene_name": "RPL10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23396-1", "protein_name": "Small ribosomal subunit protein uS3", "gene_name": "RPS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63151-1", "protein_name": "Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform", "gene_name": "PPP2R2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A72-1", "protein_name": "Protein mago nashi homolog 2", "gene_name": "MAGOHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62841-1", "protein_name": "Small ribosomal subunit protein uS19", "gene_name": "RPS15", "tax_name": "Human" }, { "uniprot_canonical_ac": "C0HME6-1", "protein_name": "RPL36 alternative reading frame protein", "gene_name": "RPL36", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62829-1", "protein_name": "Large ribosomal subunit protein uL14", "gene_name": "RPL23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32969-1", "protein_name": "Large ribosomal subunit protein uL6", "gene_name": "RPL9P7; RPL9P8; RPL9P9; RPL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30050-1", "protein_name": "Large ribosomal subunit protein uL11", "gene_name": "RPL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q04637-1", "protein_name": "Eukaryotic translation initiation factor 4 gamma 1", "gene_name": "EIF4G1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62266-1", "protein_name": "Small ribosomal subunit protein uS12", "gene_name": "RPS23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46777-1", "protein_name": "Large ribosomal subunit protein uL18", "gene_name": "RPL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96Q15-1", "protein_name": "Serine/threonine-protein kinase SMG1", "gene_name": "SMG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62753-1", "protein_name": "Small ribosomal subunit protein eS6", "gene_name": "RPS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27635-1", "protein_name": "Large ribosomal subunit protein uL16", "gene_name": "RPL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62913-1", "protein_name": "Large ribosomal subunit protein uL5", "gene_name": "RPL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36578-1", "protein_name": "Large ribosomal subunit protein uL4", "gene_name": "RPL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HAU5-1", "protein_name": "Regulator of nonsense transcripts 2", "gene_name": "UPF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5S9-1", "protein_name": "RNA-binding protein 8A", "gene_name": "RBM8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15234-1", "protein_name": "Protein CASC3", "gene_name": "CASC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05388-1", "protein_name": "Large ribosomal subunit protein uL10", "gene_name": "RPLP0", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46779-1", "protein_name": "Large ribosomal subunit protein eL28", "gene_name": "RPL28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62857-1", "protein_name": "Small ribosomal subunit protein eS28", "gene_name": "RPS28", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPJ4-1", "protein_name": "Proline-rich nuclear receptor coactivator 2", "gene_name": "PNRC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15170-1", "protein_name": "Eukaryotic peptide chain release factor GTP-binding subunit ERF3A", "gene_name": "GSPT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62495-1", "protein_name": "Eukaryotic peptide chain release factor subunit 1", "gene_name": "ETF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61313-1", "protein_name": "Large ribosomal subunit protein eL15", "gene_name": "RPL15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62081-1", "protein_name": "Small ribosomal subunit protein eS7", "gene_name": "RPS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71UM5-1", "protein_name": "Ribosomal protein eS27-like", "gene_name": "RPS27L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30153-1", "protein_name": "Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform", "gene_name": "PPP2R1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67775-1", "protein_name": "Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform", "gene_name": "PPP2CA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92900-1", "protein_name": "Regulator of nonsense transcripts 1", "gene_name": "UPF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P18621", "url": "https://www.uniprot.org/uniprotkb/P18621" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.23085078", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 116 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "SMG5-PNRC2 is functionally dominant compared with SMG5-SMG7 in mammalian nonsense-mediated mRNA decay.", "journal": "Nucleic acids research", "date": "2013", "authors": "Cho H, Han S, Choe J, Park SG, Choi SS, Kim YK", "reference": { "type": "PubMed", "id": "23234702", "url": "https://pubmed.ncbi.nlm.nih.gov/23234702" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P18621-1", "protein_name": "Large ribosomal subunit protein uL22", "gene_name": "RPL17", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H1J1-1", "protein_name": "Regulator of nonsense transcripts 3A", "gene_name": "UPF3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46776-1", "protein_name": "Large ribosomal subunit protein uL15", "gene_name": "RPL27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46782-1", "protein_name": "Small ribosomal subunit protein uS7", "gene_name": "RPS5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47914-1", "protein_name": "Large ribosomal subunit protein eL29", "gene_name": "RPL29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62244-1", "protein_name": "Small ribosomal subunit protein uS8", "gene_name": "RPS15A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22090-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 1", "gene_name": "RPS4Y1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P5R6-1", "protein_name": "Ribosomal protein eL22-like", "gene_name": "RPL22L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08708-1", "protein_name": "Small ribosomal subunit protein eS17", "gene_name": "RPS17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46783-1", "protein_name": "Small ribosomal subunit protein eS10", "gene_name": "RPS10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62917-1", "protein_name": "Large ribosomal subunit protein uL2", "gene_name": "RPL8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25398-1", "protein_name": "Small ribosomal subunit protein eS12", "gene_name": "RPS12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46781-1", "protein_name": "Small ribosomal subunit protein uS4", "gene_name": "RPS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62424-1", "protein_name": "Large ribosomal subunit protein eL8", "gene_name": "RPL7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62701-1", "protein_name": "Small ribosomal subunit protein eS4, X isoform", "gene_name": "RPS4X", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63220-1", "protein_name": "Small ribosomal subunit protein eS21", "gene_name": "RPS21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TD47-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 2", "gene_name": "RPS4Y2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11940-1", "protein_name": "Polyadenylate-binding protein 1", "gene_name": "PABPC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07020-1", "protein_name": "Large ribosomal subunit protein eL18", "gene_name": "RPL18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35268-1", "protein_name": "Large ribosomal subunit protein eL22", "gene_name": "RPL22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83881-1", "protein_name": "Large ribosomal subunit protein eL42", "gene_name": "RPL36A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61353-1", "protein_name": "Large ribosomal subunit protein eL27", "gene_name": "RPL27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNX3-1", "protein_name": "Ribosomal protein uL24-like", "gene_name": "RPL26L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02543-1", "protein_name": "Large ribosomal subunit protein eL20", "gene_name": "RPL18A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40429-1", "protein_name": "Large ribosomal subunit protein uL13", "gene_name": "RPL13A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63173-1", "protein_name": "Large ribosomal subunit protein eL38", "gene_name": "RPL38", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62910-1", "protein_name": "Large ribosomal subunit protein eL32", "gene_name": "RPL32", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39023-1", "protein_name": "Large ribosomal subunit protein uL3", "gene_name": "RPL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18077-1", "protein_name": "Large ribosomal 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"gene_name": "RPL37", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42766-1", "protein_name": "Large ribosomal subunit protein uL29", "gene_name": "RPL35", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05387-1", "protein_name": "Large ribosomal subunit protein P2", "gene_name": "RPLP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92901-1", "protein_name": "Ribosomal protein uL3-like", "gene_name": "RPL3L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46778-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "RPL21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05386-1", "protein_name": "Large ribosomal subunit protein P1", "gene_name": "RPLP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49207-1", "protein_name": "Large ribosomal subunit protein eL34", "gene_name": "RPL34", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62891-1", "protein_name": "Large ribosomal subunit protein eL39", "gene_name": "RPL39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96L21-1", "protein_name": "Ribosomal protein uL16-like", "gene_name": "RPL10L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26373-1", "protein_name": "Large ribosomal subunit protein eL13", "gene_name": "RPL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86US8-1", "protein_name": "Telomerase-binding protein EST1A", "gene_name": "SMG6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYD1-1", "protein_name": "Eukaryotic peptide chain release factor GTP-binding subunit ERF3B", "gene_name": "GSPT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60866-1", "protein_name": "Small ribosomal subunit protein uS10", "gene_name": "RPS20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969Q0-1", "protein_name": "Ribosomal protein eL42-like", "gene_name": "RPL36AL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61247-1", "protein_name": "Small ribosomal subunit protein eS1", "gene_name": "RPS3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62854-1", "protein_name": "Small ribosomal subunit protein eS26", "gene_name": "RPS26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62851-1", "protein_name": "Small ribosomal subunit protein eS25", "gene_name": "RPS25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08865-1", "protein_name": "Small ribosomal subunit protein uS2", "gene_name": "RPSA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62847-1", "protein_name": "Small ribosomal subunit protein eS24", "gene_name": "RPS24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62861-1", "protein_name": "Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein", "gene_name": "FAU", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62241-1", "protein_name": "Small ribosomal subunit protein eS8", "gene_name": "RPS8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62277-1", "protein_name": "Small ribosomal subunit protein uS15", "gene_name": "RPS13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39019-1", "protein_name": "Small ribosomal subunit protein eS19", "gene_name": "RPS19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92540-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG7", "gene_name": "SMG7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPR3-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG5", "gene_name": "SMG5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62269-1", "protein_name": "Small ribosomal subunit protein uS13", "gene_name": "RPS18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02878-1", "protein_name": "Large ribosomal subunit protein eL6", "gene_name": "RPL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62273-1", "protein_name": "Small ribosomal subunit protein uS14", "gene_name": "RPS29", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8ND04-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG8", "gene_name": "SMG8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPI6-1", "protein_name": "mRNA-decapping enzyme 1A", "gene_name": "DCP1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42677-1", "protein_name": "Small ribosomal subunit protein eS27", "gene_name": "RPS27", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38919-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "EIF4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61326-1", "protein_name": "Protein mago nashi homolog", "gene_name": "MAGOH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EH5-1", "protein_name": "Ribosomal protein eL39-like 2", "gene_name": "RPL39L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15287-1", "protein_name": "RNA-binding protein with serine-rich domain 1", "gene_name": "RNPS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0W8-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG9", "gene_name": "SMG9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62263-1", "protein_name": "Small ribosomal subunit protein uS11", "gene_name": "RPS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61513-1", "protein_name": "Large ribosomal subunit protein eL43", "gene_name": "RPL37A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18124-1", "protein_name": "Large ribosomal subunit protein uL30", "gene_name": "RPL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZI7-1", "protein_name": "Regulator of nonsense transcripts 3B", "gene_name": "UPF3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15880-1", "protein_name": "Small ribosomal subunit protein uS5", "gene_name": "RPS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62750-1", "protein_name": "Large ribosomal subunit protein uL23", "gene_name": "RPL23A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62280-1", "protein_name": "Small ribosomal subunit protein uS17", "gene_name": "RPS11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62249-1", "protein_name": "Small ribosomal subunit protein uS9", "gene_name": "RPS16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50914-1", "protein_name": "Large ribosomal subunit protein eL14", "gene_name": "RPL14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62906-1", "protein_name": "Large ribosomal subunit protein uL1", "gene_name": "RPL10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23396-1", "protein_name": "Small ribosomal subunit protein uS3", "gene_name": "RPS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63151-1", "protein_name": "Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform", "gene_name": "PPP2R2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A72-1", "protein_name": "Protein mago nashi homolog 2", "gene_name": "MAGOHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62841-1", "protein_name": "Small ribosomal subunit protein uS19", "gene_name": "RPS15", "tax_name": "Human" }, { "uniprot_canonical_ac": "C0HME6-1", "protein_name": "RPL36 alternative reading frame protein", "gene_name": "RPL36", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62829-1", "protein_name": "Large ribosomal subunit protein uL14", "gene_name": "RPL23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32969-1", "protein_name": "Large ribosomal subunit protein uL6", "gene_name": "RPL9P7; RPL9P8; RPL9P9; RPL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30050-1", "protein_name": "Large ribosomal subunit protein uL11", "gene_name": "RPL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q04637-1", "protein_name": "Eukaryotic translation initiation factor 4 gamma 1", "gene_name": "EIF4G1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62266-1", "protein_name": "Small ribosomal subunit protein uS12", "gene_name": "RPS23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46777-1", "protein_name": "Large ribosomal subunit protein uL18", "gene_name": "RPL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96Q15-1", "protein_name": "Serine/threonine-protein kinase SMG1", "gene_name": "SMG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62753-1", "protein_name": "Small ribosomal subunit protein eS6", "gene_name": "RPS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27635-1", "protein_name": "Large ribosomal subunit protein uL16", "gene_name": "RPL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62913-1", "protein_name": "Large ribosomal subunit protein uL5", "gene_name": "RPL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36578-1", "protein_name": "Large ribosomal subunit protein uL4", "gene_name": "RPL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HAU5-1", "protein_name": "Regulator of nonsense transcripts 2", "gene_name": "UPF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5S9-1", "protein_name": "RNA-binding protein 8A", "gene_name": "RBM8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15234-1", "protein_name": "Protein CASC3", "gene_name": "CASC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05388-1", "protein_name": "Large ribosomal subunit protein uL10", "gene_name": "RPLP0", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46779-1", "protein_name": "Large ribosomal subunit protein eL28", "gene_name": "RPL28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62857-1", "protein_name": "Small ribosomal subunit protein eS28", "gene_name": "RPS28", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPJ4-1", "protein_name": "Proline-rich nuclear receptor coactivator 2", "gene_name": "PNRC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15170-1", "protein_name": "Eukaryotic peptide chain release factor GTP-binding subunit ERF3A", "gene_name": "GSPT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62495-1", "protein_name": "Eukaryotic peptide chain release factor subunit 1", "gene_name": "ETF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61313-1", "protein_name": "Large ribosomal subunit protein eL15", "gene_name": "RPL15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62081-1", "protein_name": "Small ribosomal subunit protein eS7", "gene_name": "RPS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71UM5-1", "protein_name": "Ribosomal protein eS27-like", "gene_name": "RPS27L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30153-1", "protein_name": "Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform", "gene_name": "PPP2R1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67775-1", "protein_name": "Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform", "gene_name": "PPP2CA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92900-1", "protein_name": "Regulator of nonsense transcripts 1", "gene_name": "UPF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P18621", "url": "https://www.uniprot.org/uniprotkb/P18621" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.23234702", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 116 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Structures of the human and Drosophila 80S ribosome.", "journal": "Nature", "date": "2013", "authors": "Anger AM, Armache JP, Berninghausen O, Habeck M, Subklewe M, Wilson DN, Beckmann R", "reference": { "type": "PubMed", "id": "23636399", "url": "https://pubmed.ncbi.nlm.nih.gov/23636399" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P18621-1", "protein_name": "Large ribosomal subunit protein uL22", "gene_name": "RPL17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46776-1", "protein_name": "Large ribosomal subunit protein uL15", "gene_name": "RPL27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46782-1", "protein_name": "Small ribosomal subunit protein uS7", "gene_name": "RPS5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47914-1", "protein_name": "Large ribosomal subunit protein eL29", "gene_name": "RPL29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62244-1", "protein_name": "Small ribosomal subunit protein uS8", "gene_name": "RPS15A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08708-1", "protein_name": "Small ribosomal subunit protein eS17", "gene_name": "RPS17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46783-1", "protein_name": "Small ribosomal subunit protein eS10", "gene_name": "RPS10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62917-1", "protein_name": "Large ribosomal subunit protein uL2", "gene_name": "RPL8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25398-1", "protein_name": "Small ribosomal subunit protein eS12", "gene_name": "RPS12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46781-1", "protein_name": "Small ribosomal subunit protein uS4", "gene_name": "RPS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62424-1", "protein_name": "Large ribosomal subunit protein eL8", "gene_name": "RPL7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62701-1", "protein_name": "Small ribosomal subunit protein eS4, X isoform", "gene_name": "RPS4X", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63220-1", "protein_name": "Small ribosomal subunit protein eS21", "gene_name": "RPS21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07020-1", "protein_name": "Large ribosomal subunit protein eL18", "gene_name": "RPL18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35268-1", "protein_name": "Large ribosomal subunit protein eL22", "gene_name": "RPL22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83881-1", "protein_name": "Large ribosomal subunit protein eL42", "gene_name": "RPL36A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61353-1", "protein_name": "Large ribosomal subunit protein eL27", "gene_name": "RPL27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02543-1", "protein_name": "Large ribosomal subunit protein eL20", "gene_name": "RPL18A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40429-1", "protein_name": "Large ribosomal subunit protein uL13", "gene_name": "RPL13A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63173-1", "protein_name": "Large ribosomal subunit protein eL38", "gene_name": "RPL38", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62910-1", "protein_name": "Large ribosomal subunit protein eL32", "gene_name": "RPL32", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39023-1", "protein_name": "Large ribosomal subunit protein uL3", "gene_name": "RPL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18077-1", "protein_name": "Large ribosomal subunit protein eL33", "gene_name": "RPL35A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61254-1", "protein_name": "Large ribosomal subunit protein uL24", "gene_name": "RPL26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84098-1", "protein_name": "Large ribosomal subunit protein eL19", "gene_name": "RPL19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62888-1", "protein_name": "Large ribosomal subunit protein eL30", "gene_name": "RPL30", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83731-1", "protein_name": "Large ribosomal subunit protein eL24", "gene_name": "RPL24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62899-1", "protein_name": "Large ribosomal subunit protein eL31", "gene_name": "RPL31", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62945-1", "protein_name": "Small ribosomal subunit protein eS32", "gene_name": "RPL41", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61927-1", "protein_name": "Large ribosomal subunit protein eL37", "gene_name": "RPL37", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42766-1", "protein_name": "Large ribosomal subunit protein uL29", "gene_name": "RPL35", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05387-1", "protein_name": "Large ribosomal subunit protein P2", "gene_name": "RPLP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46778-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "RPL21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05386-1", "protein_name": "Large ribosomal subunit protein P1", "gene_name": "RPLP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49207-1", "protein_name": "Large ribosomal subunit protein eL34", "gene_name": "RPL34", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62891-1", "protein_name": "Large ribosomal subunit protein eL39", "gene_name": "RPL39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96L21-1", "protein_name": "Ribosomal protein uL16-like", "gene_name": "RPL10L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26373-1", "protein_name": "Large ribosomal subunit protein eL13", "gene_name": "RPL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "O17445-1", "protein_name": "Large ribosomal subunit protein eL15", "gene_name": "RpL15", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "P48149-1", "protein_name": "Small ribosomal subunit protein uS8A", "gene_name": "RpS15Aa", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "P13060-1", "protein_name": "Eukaryotic translation elongation factor 2", "gene_name": "eEF2", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "P15357-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RpS27A", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "P18101-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "RpL40", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "P41094-1", "protein_name": "Small ribosomal subunit protein uS13", "gene_name": "RpS18", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "P46223-1", "protein_name": "Large ribosomal subunit protein eL8", "gene_name": "RpL7A", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "P48588-1", "protein_name": "Small ribosomal subunit protein eS25", "gene_name": "RpS25", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "P49630-1", "protein_name": "Large ribosomal subunit protein eL36", "gene_name": "RpL36", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "P55841-1", "protein_name": "Large ribosomal subunit protein eL14", "gene_name": "RpL14", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9W5N2-1", "protein_name": "Large ribosomal subunit protein eL38", "gene_name": "RpL38", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9W237-1", "protein_name": "Small ribosomal subunit protein uS9", "gene_name": "RpS16", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9VH69-1", "protein_name": "Small ribosomal subunit protein uS14", "gene_name": "RpS29", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9VA91-1", "protein_name": "Small ribosomal subunit protein eS7", "gene_name": "RpS7", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9VB14-1", "protein_name": "Small ribosomal subunit protein eS10A", "gene_name": "RpS10a", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9VJY6-1", "protein_name": "Large ribosomal subunit protein eL24", "gene_name": "RpL24", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9VTP4-1", "protein_name": "Large ribosomal subunit protein uL1", "gene_name": "RpL10Ab", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9VLT7-1", "protein_name": "Ribosomal protein L36A, isoform A; Ribosomal protein L36A, isoform B", "gene_name": "RpL36A", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9W0A8-1", "protein_name": "Ribosomal protein L23A, isoform A; Ribosomal protein L23A, isoform B", "gene_name": "RpL23A", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9V9M7-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "RpL21", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "P60866-1", "protein_name": "Small ribosomal subunit protein uS10", "gene_name": "RPS20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9W229-1", "protein_name": "40S ribosomal protein S24", "gene_name": "RpS24", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "O18640-1", "protein_name": "Small ribosomal subunit protein RACK1", "gene_name": "Rack1", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "P61247-1", "protein_name": "Small ribosomal subunit protein eS1", "gene_name": "RPS3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62854-1", "protein_name": "Small ribosomal subunit protein eS26", "gene_name": "RPS26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62851-1", "protein_name": "Small ribosomal subunit protein eS25", "gene_name": "RPS25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62847-1", "protein_name": "Small ribosomal subunit protein eS24", "gene_name": "RPS24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62861-1", "protein_name": "Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein", "gene_name": "FAU", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62241-1", "protein_name": "Small ribosomal subunit protein eS8", "gene_name": "RPS8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46222-1", "protein_name": "Large ribosomal subunit protein uL5", "gene_name": "RpL11", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "C0HKA0-1", "protein_name": "Small ribosomal subunit protein uS11A", "gene_name": "RpS14a", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "P39018-1", "protein_name": "Small ribosomal subunit protein eS19A", "gene_name": "RpS19a", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "P41092-1", "protein_name": "Large ribosomal subunit protein uL15", "gene_name": "RpL27A", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "P31009-1", "protein_name": "Small ribosomal subunit protein uS5", "gene_name": "RpS2", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "O76927-1", "protein_name": "Small ribosomal subunit protein eS21", "gene_name": "RpS21", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "P41126-1", "protein_name": "Large ribosomal subunit protein eL13", "gene_name": "RpL13", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "P13008-1", "protein_name": "Small ribosomal subunit protein eS26", "gene_name": "RpS26", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "O61231-1", "protein_name": "Large ribosomal subunit protein uL16", "gene_name": "RpL10", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "O16130-1", "protein_name": "Large ribosomal subunit protein eL39", "gene_name": "RpL39", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "O16797-1", "protein_name": "Large ribosomal subunit protein uL3", "gene_name": "RpL3", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "P04359-1", "protein_name": "Large ribosomal subunit protein eL32", "gene_name": "RpL32", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "P09180-1", "protein_name": "Large ribosomal subunit protein uL4", "gene_name": "RpL4", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "P17704-1", "protein_name": "Small ribosomal subunit protein eS17", "gene_name": "RpS17", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "P29327-1", "protein_name": "Small ribosomal subunit protein eS6", "gene_name": "RpS6", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "P32100-1", "protein_name": "Large ribosomal subunit protein uL30", "gene_name": "RpL7", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "P36241-1", "protein_name": "Large ribosomal subunit protein eL19", "gene_name": "RpL19", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "P38979-1", "protein_name": "Small ribosomal subunit protein uS2", "gene_name": "sta", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "P41042-1", "protein_name": "Small ribosomal subunit protein eS4", "gene_name": "RpS4", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "P41093-1", "protein_name": "Large ribosomal subunit protein eL20", "gene_name": "RpL18A", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "P48159-1", "protein_name": "Large ribosomal subunit protein uL14", "gene_name": "RpL23", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9VVU2-1", "protein_name": "Ribosomal protein L26, isoform A; Ribosomal protein L26, isoform B; Ribosomal protein L26, isoform C", "gene_name": "RpL26", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9W499-1", "protein_name": "Large ribosomal subunit protein uL29", "gene_name": "RpL35", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "P62277-1", "protein_name": "Small ribosomal subunit protein uS15", "gene_name": "RPS13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39019-1", "protein_name": "Small ribosomal subunit protein eS19", "gene_name": "RPS19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62269-1", "protein_name": "Small ribosomal subunit protein uS13", "gene_name": "RPS18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02878-1", "protein_name": "Large ribosomal subunit protein eL6", "gene_name": "RPL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62273-1", "protein_name": "Small ribosomal subunit protein uS14", "gene_name": "RPS29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42677-1", "protein_name": "Small ribosomal subunit protein eS27", "gene_name": "RPS27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NC51-1", "protein_name": "SERPINE1 mRNA-binding protein 1", "gene_name": "SERBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62263-1", "protein_name": "Small ribosomal subunit protein uS11", "gene_name": "RPS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61513-1", "protein_name": "Large ribosomal subunit protein eL43", "gene_name": "RPL37A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18124-1", "protein_name": "Large ribosomal subunit protein uL30", "gene_name": "RPL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15880-1", "protein_name": "Small ribosomal subunit protein uS5", "gene_name": "RPS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62750-1", "protein_name": "Large ribosomal subunit protein uL23", "gene_name": "RPL23A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62280-1", "protein_name": "Small ribosomal subunit protein uS17", "gene_name": "RPS11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62249-1", "protein_name": "Small ribosomal subunit protein uS9", "gene_name": "RPS16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50914-1", "protein_name": "Large ribosomal subunit protein eL14", "gene_name": "RPL14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62906-1", "protein_name": "Large ribosomal subunit protein uL1", "gene_name": "RPL10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9VNB9-1", "protein_name": "Large ribosomal subunit protein eL33", "gene_name": "RpL35A", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "P23396-1", "protein_name": "Small ribosomal subunit protein uS3", "gene_name": "RPS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9VBU9-1", "protein_name": "40S ribosomal protein S27", "gene_name": "RpS27", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9VJ19-1", "protein_name": "Large ribosomal subunit protein eL30", "gene_name": "RpL30", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9V9W3-1", "protein_name": "Large ribosomal subunit protein eL6", "gene_name": "RpL6", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9VBH8-1", "protein_name": "Large ribosomal subunit protein eL34", "gene_name": "RpL34a", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "P62841-1", "protein_name": "Small ribosomal subunit protein uS19", "gene_name": "RPS15", "tax_name": "Human" }, { "uniprot_canonical_ac": "C0HME6-1", "protein_name": "RPL36 alternative reading frame protein", "gene_name": "RPL36", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62829-1", "protein_name": "Large ribosomal subunit protein uL14", "gene_name": "RPL23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32969-1", "protein_name": "Large ribosomal subunit protein uL6", "gene_name": "RPL9P7; RPL9P8; RPL9P9; RPL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30050-1", "protein_name": "Large ribosomal subunit protein uL11", "gene_name": "RPL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62266-1", "protein_name": "Small ribosomal subunit protein uS12", "gene_name": "RPS23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46777-1", "protein_name": "Large ribosomal subunit protein uL18", "gene_name": "RPL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9VBX3-1", "protein_name": "Vig2, isoform B", "gene_name": "vig2", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9VBN5-1", "protein_name": "60S ribosomal protein L27", "gene_name": "RpL27", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "P62753-1", "protein_name": "Small ribosomal subunit protein eS6", "gene_name": "RPS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62913-1", "protein_name": "Large ribosomal subunit protein uL5", "gene_name": "RPL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36578-1", "protein_name": "Large ribosomal subunit protein uL4", "gene_name": "RPL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05388-1", "protein_name": "Large ribosomal subunit protein uL10", "gene_name": "RPLP0", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46779-1", "protein_name": "Large ribosomal subunit protein eL28", "gene_name": "RPL28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62857-1", "protein_name": "Small ribosomal subunit 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"P26373-1", "protein_name": "Large ribosomal subunit protein eL13", "gene_name": "RPL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41056-1", "protein_name": "Large ribosomal subunit protein eL33B", "gene_name": "RPL33B", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P41805-1", "protein_name": "Large ribosomal subunit protein uL16", "gene_name": "RPL10", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P46654-1", "protein_name": "Small ribosomal subunit protein uS2B", "gene_name": "RPS0B", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P46990-1", "protein_name": "Large ribosomal subunit protein uL22B", "gene_name": "RPL17B", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P48164-1", "protein_name": "Small ribosomal subunit protein eS7B", "gene_name": "RPS7B", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P49626-1", "protein_name": "Large ribosomal subunit protein uL4B", "gene_name": "RPL4B", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P51402-1", "protein_name": "Large ribosomal subunit protein eL37B", "gene_name": "RPL37B", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P23248-1", "protein_name": "Small ribosomal subunit protein eS1B", "gene_name": "RPS1B", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P29453-1", "protein_name": "Large ribosomal subunit protein eL8B", "gene_name": "RPL8B", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P32905-1", "protein_name": "Small ribosomal subunit protein uS2A", "gene_name": "RPS0A", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P33442-1", "protein_name": "Small ribosomal subunit protein eS1A", "gene_name": "RPS1A", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P35997-1", "protein_name": "Small ribosomal subunit protein eS27A", "gene_name": "RPS27A", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P36105-1", "protein_name": "Large ribosomal subunit protein eL14A", "gene_name": "RPL14A", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38011-1", "protein_name": "Small ribosomal subunit protein RACK1", "gene_name": "ASC1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P60866-1", "protein_name": "Small ribosomal subunit protein uS10", "gene_name": "RPS20", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61247-1", "protein_name": "Small ribosomal subunit protein eS1", "gene_name": "RPS3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62854-1", "protein_name": "Small ribosomal subunit protein eS26", "gene_name": "RPS26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62851-1", "protein_name": "Small ribosomal subunit protein eS25", "gene_name": "RPS25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08865-1", "protein_name": "Small ribosomal subunit protein uS2", "gene_name": "RPSA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62847-1", "protein_name": "Small ribosomal subunit protein eS24", "gene_name": "RPS24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62861-1", "protein_name": "Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein", "gene_name": "FAU", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62241-1", "protein_name": "Small ribosomal subunit protein eS8", "gene_name": "RPS8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12690-1", "protein_name": "Large ribosomal subunit protein eL13A", "gene_name": "RPL13A", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P54780-1", "protein_name": "Large ribosomal subunit protein eL15B", "gene_name": "RPL15B", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q01855-1", "protein_name": "Small ribosomal subunit protein uS19", "gene_name": "RPS15", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12213-1", "protein_name": "Large ribosomal subunit protein uL30B", "gene_name": "RPL7B", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q3E754-1", "protein_name": "Small ribosomal subunit protein eS21B", "gene_name": "RPS21B", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q3E757-1", "protein_name": "Large ribosomal subunit protein uL5B", "gene_name": "RPL11B", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q3E792-1", "protein_name": "Small ribosomal subunit protein eS25A", "gene_name": "RPS25A", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q3E7X9-1", "protein_name": "Small ribosomal subunit protein eS28A", "gene_name": "RPS28A", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38701-1", "protein_name": "Small ribosomal subunit protein uS10", "gene_name": "RPS20", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38711-1", "protein_name": "Small ribosomal subunit protein eS27B", "gene_name": "RPS27B", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P39516-1", "protein_name": "Small ribosomal subunit protein uS11B", "gene_name": "RPS14B", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P49166-1", "protein_name": "Large ribosomal subunit protein eL37A", "gene_name": "RPL37A", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P25443-1", "protein_name": "Small ribosomal subunit protein uS5", "gene_name": "RPS2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P26321-1", "protein_name": "Large ribosomal subunit protein uL18", "gene_name": "RPL5", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P62277-1", "protein_name": "Small ribosomal subunit protein uS15", "gene_name": "RPS13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39019-1", "protein_name": "Small ribosomal subunit protein eS19", "gene_name": "RPS19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62269-1", "protein_name": "Small ribosomal subunit protein uS13", "gene_name": "RPS18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02878-1", "protein_name": "Large ribosomal subunit protein eL6", "gene_name": "RPL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62273-1", "protein_name": "Small ribosomal subunit protein uS14", "gene_name": "RPS29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42677-1", "protein_name": "Small ribosomal subunit protein eS27", "gene_name": "RPS27", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62263-1", "protein_name": "Small ribosomal subunit protein uS11", "gene_name": "RPS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61513-1", "protein_name": "Large ribosomal subunit protein eL43", "gene_name": "RPL37A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18124-1", "protein_name": "Large ribosomal subunit protein uL30", "gene_name": "RPL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15880-1", "protein_name": "Small ribosomal subunit protein uS5", "gene_name": "RPS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62750-1", "protein_name": "Large ribosomal subunit protein uL23", "gene_name": "RPL23A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62280-1", "protein_name": "Small ribosomal subunit protein uS17", "gene_name": "RPS11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62249-1", "protein_name": "Small ribosomal subunit protein uS9", "gene_name": "RPS16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50914-1", "protein_name": "Large ribosomal subunit protein eL14", "gene_name": "RPL14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62906-1", "protein_name": "Large ribosomal subunit protein uL1", "gene_name": "RPL10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02407-1", "protein_name": "Small ribosomal subunit protein eS17A", "gene_name": "RPS17A", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P0C2H7-1", "protein_name": "Large ribosomal subunit protein eL27B", "gene_name": "RPL27B", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P0CX24-1", "protein_name": "Large ribosomal subunit protein eL20B", "gene_name": "RPL20B", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P14127-1", "protein_name": "Small ribosomal subunit protein eS17B", "gene_name": "RPS17B", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38061-1", "protein_name": "Large ribosomal subunit protein eL32", "gene_name": "RPL32", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38754-1", "protein_name": "Large ribosomal subunit protein eL14B", "gene_name": "RPL14B", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P39938-1", "protein_name": "Small ribosomal subunit protein eS26A", "gene_name": "RPS26A", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P39939-1", "protein_name": "Small ribosomal subunit protein eS26B", "gene_name": "RPS26B", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P40212-1", "protein_name": "Large ribosomal subunit protein eL13B", "gene_name": "RPL13B", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P40525-1", "protein_name": "Large ribosomal subunit protein eL34B", "gene_name": "RPL34B", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P41057-1", "protein_name": "Small ribosomal subunit protein uS14A", "gene_name": "RPS29A", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P41058-1", "protein_name": "Small ribosomal subunit protein uS14B", "gene_name": "RPS29B", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P46784-1", "protein_name": "Small ribosomal subunit protein eS10B", "gene_name": "RPS10B", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P48589-1", "protein_name": "Small ribosomal subunit protein eS12", "gene_name": "RPS12", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P49167-1", "protein_name": "Large ribosomal subunit protein eL38", "gene_name": "RPL38", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P51401-1", "protein_name": "Large ribosomal subunit protein uL6B", "gene_name": "RPL9B", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P53221-1", "protein_name": "Large ribosomal subunit protein uL24B", "gene_name": "RPL26B", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P56628-1", "protein_name": "Large ribosomal subunit protein eL22B", "gene_name": "RPL22B", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P87262-1", "protein_name": "Large ribosomal subunit protein eL34A", "gene_name": "RPL34A", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q02753-1", "protein_name": "Large ribosomal subunit protein eL21A", "gene_name": "RPL21A", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P23396-1", "protein_name": "Small ribosomal subunit protein uS3", "gene_name": "RPS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62841-1", "protein_name": "Small ribosomal subunit protein uS19", "gene_name": "RPS15", "tax_name": "Human" }, { "uniprot_canonical_ac": "C0HME6-1", "protein_name": "RPL36 alternative reading frame protein", "gene_name": "RPL36", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62829-1", "protein_name": "Large ribosomal subunit protein uL14", "gene_name": "RPL23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32969-1", "protein_name": "Large ribosomal subunit protein uL6", "gene_name": "RPL9P7; RPL9P8; RPL9P9; RPL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30050-1", "protein_name": "Large ribosomal subunit protein uL11", "gene_name": "RPL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62266-1", "protein_name": "Small ribosomal subunit protein uS12", "gene_name": "RPS23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46777-1", "protein_name": "Large ribosomal subunit protein uL18", "gene_name": "RPL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62753-1", "protein_name": "Small ribosomal subunit protein eS6", "gene_name": "RPS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27635-1", "protein_name": "Large ribosomal subunit protein uL16", "gene_name": "RPL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62913-1", "protein_name": "Large ribosomal subunit protein uL5", "gene_name": "RPL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36578-1", "protein_name": "Large ribosomal subunit protein uL4", "gene_name": "RPL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05388-1", "protein_name": "Large ribosomal subunit protein uL10", "gene_name": "RPLP0", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46779-1", "protein_name": "Large ribosomal subunit protein eL28", "gene_name": "RPL28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62857-1", "protein_name": "Small ribosomal subunit protein eS28", "gene_name": "RPS28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61313-1", "protein_name": "Large ribosomal subunit protein eL15", "gene_name": "RPL15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62081-1", "protein_name": "Small ribosomal subunit protein eS7", "gene_name": "RPS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08745-1", "protein_name": "Small ribosomal subunit protein eS10A", "gene_name": "RPS10A", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12672-1", "protein_name": "Large ribosomal subunit protein eL21B", "gene_name": "RPL21B", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q3E7Y3-1", "protein_name": "Small ribosomal subunit protein uS8B", "gene_name": "RPS22B", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P14120-1", "protein_name": "Large ribosomal subunit protein eL30", "gene_name": "RPL30", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P14126-1", "protein_name": "Large ribosomal subunit protein uL3", "gene_name": "RPL3", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P17076-1", "protein_name": "Large ribosomal subunit protein eL8A", "gene_name": "RPL8A", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P26783-1", "protein_name": "Small ribosomal subunit protein uS7", "gene_name": "RPS5", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P26784-1", "protein_name": "Large ribosomal subunit protein uL13A", "gene_name": "RPL16A", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P26785-1", "protein_name": "Large ribosomal subunit protein uL13B", "gene_name": "RPL16B", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P26786-1", "protein_name": "Small ribosomal subunit protein eS7A", "gene_name": "RPS7A", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "O13516-1", "protein_name": "Small ribosomal subunit protein uS4A", "gene_name": "RPS9A", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P02400-1", "protein_name": "Large ribosomal subunit protein P2B", "gene_name": "RPP2B", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P02406-1", "protein_name": "Large ribosomal subunit protein uL15", "gene_name": "RPL28", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P04456-1", "protein_name": "Large ribosomal subunit protein uL23", "gene_name": "RPL25", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P05317-1", "protein_name": "Large ribosomal subunit protein uL10", "gene_name": "RPP0", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P05318-1", "protein_name": "Large ribosomal subunit protein P1A", "gene_name": "RPP1A", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P05319-1", "protein_name": "Large ribosomal subunit protein P2A", "gene_name": "RPP2A", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P05737-1", "protein_name": "Large ribosomal subunit protein uL30A", "gene_name": "RPL7A", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P05739-1", "protein_name": "Large ribosomal subunit protein eL6B", "gene_name": "RPL6B", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P05740-1", "protein_name": "Large ribosomal subunit protein uL22A", "gene_name": "RPL17A", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P05744-1", "protein_name": "Large ribosomal subunit protein eL33A", "gene_name": "RPL33A", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P05745-1", "protein_name": "Large ribosomal subunit protein eL36A", "gene_name": "RPL36A", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P05748-1", "protein_name": "Large ribosomal subunit protein eL15A", "gene_name": "RPL15A", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P05750-1", "protein_name": "Small ribosomal subunit protein uS3", "gene_name": "RPS3", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P05755-1", "protein_name": "Small ribosomal subunit protein uS4B", "gene_name": "RPS9B", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P05756-1", "protein_name": "Small ribosomal subunit protein uS15", "gene_name": "RPS13", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P05759-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS31", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P06367-1", "protein_name": "Small ribosomal subunit protein uS11A", "gene_name": "RPS14A", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P07280-1", "protein_name": "Small ribosomal subunit protein eS19A", "gene_name": "RPS19A", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P07281-1", "protein_name": "Small ribosomal subunit protein eS19B", "gene_name": "RPS19B", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P0C0T4-1", "protein_name": "Small ribosomal subunit protein eS25B", "gene_name": "RPS25B", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P0C0V8-1", "protein_name": "Small ribosomal subunit protein eS21A", "gene_name": "RPS21A", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P0C0X0-1", "protein_name": "Small ribosomal subunit protein eS28B", "gene_name": "RPS28B", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P0CH08-1", "protein_name": "Ubiquitin-ribosomal protein eL40A fusion protein", "gene_name": "RPL40A", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P0CH09-1", "protein_name": "Ubiquitin-ribosomal protein eL40B fusion protein", "gene_name": "RPL40B", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P0CX27-1", "protein_name": "Large ribosomal subunit protein eL42A", "gene_name": "RPL42A", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P0CX28-1", "protein_name": "Large ribosomal subunit protein eL42B", "gene_name": "RPL42B", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P0CX29-1", "protein_name": "Small ribosomal subunit protein uS12A", "gene_name": "RPS23A", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P0CX30-1", "protein_name": "Small ribosomal subunit protein uS12B", "gene_name": "RPS23B", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P0CX31-1", "protein_name": "Small ribosomal subunit protein eS24A", "gene_name": "RPS24A", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P0CX32-1", "protein_name": "Small ribosomal subunit protein eS24B", "gene_name": "RPS24B", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P0CX35-1", "protein_name": "Small ribosomal subunit protein eS4A", "gene_name": "RPS4A", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P0CX36-1", "protein_name": "Small ribosomal subunit protein eS4B", "gene_name": "RPS4B", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P0CX37-1", "protein_name": "Small ribosomal subunit protein eS6A", "gene_name": "RPS6A", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P0CX38-1", "protein_name": "Small ribosomal subunit protein eS6B", "gene_name": "RPS6B", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P0CX39-1", "protein_name": "Small ribosomal subunit protein eS8A", "gene_name": "RPS8A", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P0CX40-1", "protein_name": "Small ribosomal subunit protein eS8B", "gene_name": "RPS8B", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P0CX41-1", "protein_name": "Large ribosomal subunit protein uL14A", "gene_name": "RPL23A", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P0CX42-1", "protein_name": "Large ribosomal subunit protein uL14B", "gene_name": "RPL23B", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P0CX43-1", "protein_name": "Large ribosomal subunit protein uL1A", "gene_name": "RPL1A", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P0CX44-1", "protein_name": "Large ribosomal subunit protein uL1B", "gene_name": "RPL1B", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P0CX45-1", "protein_name": "Large ribosomal subunit protein uL2A", "gene_name": "RPL2A", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P0CX46-1", "protein_name": "Large ribosomal subunit protein uL2B", "gene_name": "RPL2B", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P0CX47-1", "protein_name": "Small ribosomal subunit protein uS17A", "gene_name": "RPS11A", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P0CX48-1", "protein_name": "Small ribosomal subunit protein uS17B", "gene_name": "RPS11B", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P0CX49-1", "protein_name": "Large ribosomal subunit protein eL18A", "gene_name": "RPL18A", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P0CX50-1", "protein_name": "Large ribosomal subunit protein eL18B", "gene_name": "RPL18B", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P0CX51-1", "protein_name": "Small ribosomal subunit protein uS9A", "gene_name": "RPS16A", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P0CX53-1", "protein_name": "Large ribosomal subunit protein uL11A", "gene_name": "RPL12A", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P0CX54-1", "protein_name": "Large ribosomal subunit protein uL11B", "gene_name": "RPL12B", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P0CX55-1", "protein_name": "Small ribosomal subunit protein uS13A", "gene_name": "RPS18A", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P0CX56-1", "protein_name": "Small ribosomal subunit protein uS13B", "gene_name": "RPS18B", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P0CX82-1", "protein_name": "Large ribosomal subunit protein eL19A", "gene_name": "RPL19A", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P0CX83-1", "protein_name": "Large ribosomal subunit protein eL19", "gene_name": "RPL19B", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P0CX84-1", "protein_name": "Large ribosomal subunit protein uL29A", "gene_name": "RPL35A", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P0CX85-1", "protein_name": "Large ribosomal subunit protein uL29B", "gene_name": "RPL35B", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P10622-1", "protein_name": "Large ribosomal subunit protein P1B", "gene_name": "RPP1B", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P10664-1", "protein_name": "Large ribosomal subunit protein uL4A", "gene_name": "RPL4A", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q02326-1", "protein_name": "Large ribosomal subunit protein eL6A", "gene_name": "RPL6A", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "O14455-1", "protein_name": "Large ribosomal subunit protein eL36B", "gene_name": "RPL36B", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P04449-1", "protein_name": "Large ribosomal subunit protein eL24A", "gene_name": "RPL24A", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P04650-1", "protein_name": "Large ribosomal subunit protein eL39", "gene_name": "RPL39", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P05738-1", "protein_name": "Large ribosomal subunit protein uL6A", "gene_name": "RPL9A", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P05743-1", "protein_name": "Large ribosomal subunit protein uL24A", "gene_name": "RPL26A", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P05747-1", "protein_name": "Large ribosomal subunit protein eL29", "gene_name": "RPL29", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P05749-1", "protein_name": "Large ribosomal subunit protein eL22A", "gene_name": "RPL22A", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P0C0W1-1", "protein_name": "Small ribosomal subunit protein uS8A", "gene_name": "RPS22A", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P0C2H6-1", "protein_name": "Large ribosomal subunit protein eL27A", "gene_name": "RPL27A", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P0C2H8-1", "protein_name": "Large ribosomal subunit protein eL31A", "gene_name": "RPL31A", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P0C2H9-1", "protein_name": "Large ribosomal subunit protein eL31B", "gene_name": "RPL31B", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P0CX23-1", "protein_name": "Large ribosomal subunit protein eL20A", "gene_name": "RPL20A", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P0CX25-1", "protein_name": "Large ribosomal subunit protein eL43A", "gene_name": "RPL43A", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P0CX26-1", "protein_name": "Large ribosomal subunit protein eL43B", "gene_name": "RPL43B", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P0CX33-1", "protein_name": "Small ribosomal subunit protein eS30A", "gene_name": "RPS30A", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P0CX34-1", "protein_name": "Small ribosomal subunit protein eS30B", "gene_name": "RPS30B", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P0CX52-1", "protein_name": "Small ribosomal subunit protein uS9B", "gene_name": "RPS16B", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P0CX86-1", "protein_name": "Small ribosomal subunit protein eS32A", "gene_name": "RPL41A", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P0CX87-1", "protein_name": "Small ribosomal subunit protein eS32B", "gene_name": "RPL41B", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P24000-1", "protein_name": "Large ribosomal subunit protein eL24B", "gene_name": "RPL24B", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P0C0W9-1", "protein_name": "Large ribosomal subunit protein uL5A", "gene_name": "RPL11A", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P63244-1", "protein_name": "Small ribosomal subunit protein RACK1", "gene_name": "RACK1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P18621", "url": "https://www.uniprot.org/uniprotkb/P18621" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.24524803", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 220 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "TRIB3 increases cell resistance to arsenite toxicity by limiting the expression of the glutathione-degrading enzyme CHAC1.", "journal": "Biochimica et biophysica acta", "date": "2016", "authors": "Ord D, Ord T, Biene T, Ord T", "reference": { "type": "PubMed", "id": "27526673", "url": "https://pubmed.ncbi.nlm.nih.gov/27526673" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P18621-1", "protein_name": "Large ribosomal subunit protein uL22", "gene_name": "RPL17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46776-1", "protein_name": "Large ribosomal subunit protein uL15", "gene_name": "RPL27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46782-1", "protein_name": "Small ribosomal subunit protein uS7", "gene_name": "RPS5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47914-1", "protein_name": "Large ribosomal subunit protein eL29", "gene_name": "RPL29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62244-1", "protein_name": "Small ribosomal subunit protein uS8", "gene_name": "RPS15A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22090-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 1", "gene_name": "RPS4Y1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P5R6-1", "protein_name": "Ribosomal protein eL22-like", "gene_name": "RPL22L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08708-1", "protein_name": "Small ribosomal subunit protein eS17", "gene_name": "RPS17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46783-1", "protein_name": "Small ribosomal subunit protein eS10", "gene_name": "RPS10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62917-1", "protein_name": "Large ribosomal subunit protein uL2", "gene_name": "RPL8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25398-1", "protein_name": "Small ribosomal subunit protein eS12", "gene_name": "RPS12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46781-1", "protein_name": "Small ribosomal subunit protein uS4", "gene_name": "RPS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62424-1", "protein_name": "Large ribosomal subunit protein eL8", "gene_name": "RPL7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62701-1", "protein_name": "Small ribosomal subunit protein eS4, X isoform", "gene_name": "RPS4X", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63220-1", "protein_name": "Small ribosomal subunit protein eS21", "gene_name": "RPS21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TD47-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 2", "gene_name": "RPS4Y2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96RU7-1", "protein_name": "Tribbles homolog 3", "gene_name": "TRIB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08243-1", "protein_name": "Asparagine synthetase [glutamine-hydrolyzing]", "gene_name": "ASNS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53567-1", "protein_name": "CCAAT/enhancer-binding protein gamma", "gene_name": "CEBPG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18847-1", "protein_name": "Cyclic AMP-dependent transcription factor ATF-3", "gene_name": "ATF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35638-1", "protein_name": "DNA damage-inducible transcript 3 protein", "gene_name": "DDIT3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15336-1", "protein_name": "Cyclic AMP-dependent transcription factor ATF-2", "gene_name": "ATF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18848-1", "protein_name": "Cyclic AMP-dependent transcription factor ATF-4", "gene_name": "ATF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07020-1", "protein_name": "Large ribosomal subunit protein eL18", "gene_name": "RPL18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35268-1", "protein_name": "Large ribosomal subunit protein eL22", "gene_name": "RPL22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83881-1", "protein_name": "Large ribosomal subunit protein eL42", "gene_name": "RPL36A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61353-1", "protein_name": "Large ribosomal subunit protein eL27", "gene_name": "RPL27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNX3-1", "protein_name": "Ribosomal protein uL24-like", "gene_name": "RPL26L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02543-1", "protein_name": "Large ribosomal subunit protein eL20", "gene_name": "RPL18A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40429-1", "protein_name": "Large ribosomal subunit protein uL13", "gene_name": "RPL13A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63173-1", "protein_name": "Large ribosomal subunit protein eL38", "gene_name": "RPL38", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62910-1", "protein_name": "Large ribosomal subunit protein eL32", "gene_name": "RPL32", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39023-1", "protein_name": "Large ribosomal subunit protein uL3", "gene_name": "RPL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18077-1", "protein_name": "Large ribosomal subunit protein eL33", "gene_name": "RPL35A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61254-1", "protein_name": "Large ribosomal subunit protein uL24", "gene_name": "RPL26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84098-1", "protein_name": "Large ribosomal subunit protein eL19", "gene_name": "RPL19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62888-1", "protein_name": "Large ribosomal subunit protein eL30", "gene_name": "RPL30", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83731-1", "protein_name": "Large ribosomal subunit protein eL24", "gene_name": "RPL24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62899-1", "protein_name": "Large ribosomal subunit protein eL31", "gene_name": "RPL31", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62945-1", "protein_name": "Small ribosomal subunit protein eS32", "gene_name": "RPL41", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61927-1", "protein_name": "Large ribosomal subunit protein eL37", "gene_name": "RPL37", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42766-1", "protein_name": "Large ribosomal subunit protein uL29", "gene_name": "RPL35", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05387-1", "protein_name": "Large ribosomal subunit protein P2", "gene_name": "RPLP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92901-1", "protein_name": "Ribosomal protein uL3-like", "gene_name": "RPL3L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46778-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "RPL21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05386-1", "protein_name": "Large ribosomal subunit protein P1", "gene_name": "RPLP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49207-1", "protein_name": "Large ribosomal subunit protein eL34", "gene_name": "RPL34", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62891-1", "protein_name": "Large ribosomal subunit protein eL39", "gene_name": "RPL39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96L21-1", "protein_name": "Ribosomal protein uL16-like", "gene_name": "RPL10L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26373-1", "protein_name": "Large ribosomal subunit protein eL13", "gene_name": "RPL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60866-1", "protein_name": "Small ribosomal subunit protein uS10", "gene_name": "RPS20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969Q0-1", "protein_name": "Ribosomal protein eL42-like", "gene_name": "RPL36AL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61247-1", "protein_name": "Small ribosomal subunit protein eS1", "gene_name": "RPS3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P2X3-1", "protein_name": "Protein IMPACT", "gene_name": "IMPACT", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62854-1", "protein_name": "Small ribosomal subunit protein eS26", "gene_name": "RPS26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62851-1", "protein_name": "Small ribosomal subunit protein eS25", "gene_name": "RPS25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08865-1", "protein_name": "Small ribosomal subunit protein uS2", "gene_name": "RPSA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62847-1", "protein_name": "Small ribosomal subunit protein eS24", "gene_name": "RPS24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62861-1", "protein_name": "Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein", "gene_name": "FAU", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62241-1", "protein_name": "Small ribosomal subunit protein eS8", "gene_name": "RPS8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62277-1", "protein_name": "Small ribosomal subunit protein uS15", "gene_name": "RPS13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39019-1", "protein_name": "Small ribosomal subunit protein eS19", "gene_name": "RPS19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62269-1", "protein_name": "Small ribosomal subunit protein uS13", "gene_name": "RPS18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02878-1", "protein_name": "Large ribosomal subunit protein eL6", "gene_name": "RPL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62273-1", "protein_name": "Small ribosomal subunit protein uS14", "gene_name": "RPS29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17676-1", "protein_name": "CCAAT/enhancer-binding protein beta", "gene_name": "CEBPB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20042-1", "protein_name": "Eukaryotic translation initiation factor 2 subunit 2", "gene_name": "EIF2S2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42677-1", "protein_name": "Small ribosomal subunit protein eS27", "gene_name": "RPS27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EH5-1", "protein_name": "Ribosomal protein eL39-like 2", "gene_name": "RPL39L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62263-1", "protein_name": "Small ribosomal subunit protein uS11", "gene_name": "RPS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61513-1", "protein_name": "Large ribosomal subunit protein eL43", "gene_name": "RPL37A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18124-1", "protein_name": "Large ribosomal subunit protein uL30", "gene_name": "RPL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15880-1", "protein_name": "Small ribosomal subunit protein uS5", "gene_name": "RPS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62750-1", "protein_name": "Large ribosomal subunit protein uL23", "gene_name": "RPL23A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62280-1", "protein_name": "Small ribosomal subunit protein uS17", "gene_name": "RPS11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62249-1", "protein_name": "Small ribosomal subunit protein uS9", "gene_name": "RPS16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50914-1", "protein_name": "Large ribosomal subunit protein eL14", "gene_name": "RPL14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62906-1", "protein_name": "Large ribosomal subunit protein uL1", "gene_name": "RPL10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23396-1", "protein_name": "Small ribosomal subunit protein uS3", "gene_name": "RPS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05198-1", "protein_name": "Eukaryotic translation initiation factor 2 subunit 1", "gene_name": "EIF2S1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62841-1", "protein_name": "Small ribosomal subunit protein uS19", "gene_name": "RPS15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92616-1", "protein_name": "Stalled ribosome sensor GCN1", "gene_name": "GCN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "C0HME6-1", "protein_name": "RPL36 alternative reading frame protein", "gene_name": "RPL36", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62829-1", "protein_name": "Large ribosomal subunit protein uL14", "gene_name": "RPL23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32969-1", "protein_name": "Large ribosomal subunit protein uL6", "gene_name": "RPL9P7; RPL9P8; RPL9P9; RPL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30050-1", "protein_name": "Large ribosomal subunit protein uL11", "gene_name": "RPL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62266-1", "protein_name": "Small ribosomal subunit protein uS12", "gene_name": "RPS23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46777-1", "protein_name": "Large ribosomal subunit protein uL18", "gene_name": "RPL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P2K8-1", "protein_name": "eIF-2-alpha kinase GCN2", "gene_name": "EIF2AK4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41091-1", "protein_name": "Eukaryotic translation initiation factor 2 subunit 3", "gene_name": "EIF2S3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62753-1", "protein_name": "Small ribosomal subunit protein eS6", "gene_name": "RPS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27635-1", "protein_name": "Large ribosomal subunit protein uL16", "gene_name": "RPL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62913-1", "protein_name": "Large ribosomal subunit protein uL5", "gene_name": "RPL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36578-1", "protein_name": "Large ribosomal subunit protein uL4", "gene_name": "RPL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05388-1", "protein_name": "Large ribosomal subunit protein uL10", "gene_name": "RPLP0", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46779-1", "protein_name": "Large ribosomal subunit protein eL28", "gene_name": "RPL28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62857-1", "protein_name": "Small ribosomal subunit protein eS28", "gene_name": "RPS28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61313-1", "protein_name": "Large ribosomal subunit protein eL15", "gene_name": "RPL15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62081-1", "protein_name": "Small ribosomal subunit protein eS7", "gene_name": "RPS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71UM5-1", "protein_name": "Ribosomal protein eS27-like", "gene_name": "RPS27L", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P18621", "url": "https://www.uniprot.org/uniprotkb/P18621" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.27526673", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 102 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Initiation of Quality Control during Poly(A) Translation Requires Site-Specific Ribosome Ubiquitination.", "journal": "Molecular cell", "date": "2017", "authors": "Juszkiewicz S, Hegde RS", "reference": { "type": "PubMed", "id": "28065601", "url": "https://pubmed.ncbi.nlm.nih.gov/28065601" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P18621-1", "protein_name": "Large ribosomal subunit protein uL22", "gene_name": "RPL17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46776-1", "protein_name": "Large ribosomal subunit protein uL15", "gene_name": "RPL27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46782-1", "protein_name": "Small ribosomal subunit protein uS7", "gene_name": "RPS5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47914-1", "protein_name": "Large ribosomal subunit protein eL29", "gene_name": "RPL29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62244-1", "protein_name": "Small ribosomal subunit protein uS8", "gene_name": "RPS15A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22090-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 1", "gene_name": "RPS4Y1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P5R6-1", "protein_name": "Ribosomal protein eL22-like", "gene_name": "RPL22L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08708-1", "protein_name": "Small ribosomal subunit protein eS17", "gene_name": "RPS17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46783-1", "protein_name": "Small ribosomal subunit protein eS10", "gene_name": "RPS10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62917-1", "protein_name": "Large ribosomal subunit protein uL2", "gene_name": "RPL8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25398-1", "protein_name": "Small ribosomal subunit protein eS12", "gene_name": "RPS12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46781-1", "protein_name": "Small ribosomal subunit protein uS4", "gene_name": "RPS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62424-1", "protein_name": "Large ribosomal subunit protein eL8", "gene_name": "RPL7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62701-1", "protein_name": "Small ribosomal subunit protein eS4, X isoform", "gene_name": "RPS4X", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63220-1", "protein_name": "Small ribosomal subunit protein eS21", "gene_name": "RPS21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TD47-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 2", "gene_name": "RPS4Y2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H1I8-1", "protein_name": "Activating signal cointegrator 1 complex subunit 2", "gene_name": "ASCC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07020-1", "protein_name": "Large ribosomal subunit protein eL18", "gene_name": "RPL18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35268-1", "protein_name": "Large ribosomal subunit protein eL22", "gene_name": "RPL22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83881-1", "protein_name": "Large ribosomal subunit protein eL42", "gene_name": "RPL36A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61353-1", "protein_name": "Large ribosomal subunit protein eL27", "gene_name": "RPL27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNX3-1", "protein_name": "Ribosomal protein uL24-like", "gene_name": "RPL26L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02543-1", "protein_name": "Large ribosomal subunit protein eL20", "gene_name": "RPL18A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40429-1", "protein_name": "Large ribosomal subunit protein uL13", "gene_name": "RPL13A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63173-1", "protein_name": "Large ribosomal subunit protein eL38", "gene_name": "RPL38", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62910-1", "protein_name": "Large ribosomal subunit protein eL32", "gene_name": "RPL32", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39023-1", "protein_name": "Large ribosomal subunit protein uL3", "gene_name": "RPL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18077-1", "protein_name": "Large ribosomal subunit protein eL33", "gene_name": "RPL35A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61254-1", "protein_name": "Large ribosomal subunit protein uL24", "gene_name": "RPL26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84098-1", "protein_name": "Large ribosomal subunit protein eL19", "gene_name": "RPL19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62888-1", "protein_name": "Large ribosomal subunit protein eL30", "gene_name": "RPL30", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83731-1", "protein_name": "Large ribosomal subunit protein eL24", "gene_name": "RPL24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62899-1", "protein_name": "Large ribosomal subunit protein eL31", "gene_name": "RPL31", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62945-1", "protein_name": "Small ribosomal subunit protein eS32", "gene_name": "RPL41", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61927-1", "protein_name": "Large ribosomal subunit protein eL37", "gene_name": "RPL37", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42766-1", "protein_name": "Large ribosomal subunit protein uL29", "gene_name": "RPL35", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05387-1", "protein_name": "Large ribosomal subunit protein P2", "gene_name": "RPLP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92901-1", "protein_name": "Ribosomal protein uL3-like", "gene_name": "RPL3L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46778-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "RPL21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05386-1", "protein_name": "Large ribosomal subunit protein P1", "gene_name": "RPLP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49207-1", "protein_name": "Large ribosomal subunit protein eL34", "gene_name": "RPL34", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62891-1", "protein_name": "Large ribosomal subunit protein eL39", "gene_name": "RPL39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96L21-1", "protein_name": "Ribosomal protein uL16-like", "gene_name": "RPL10L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26373-1", "protein_name": "Large ribosomal subunit protein eL13", "gene_name": "RPL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60866-1", "protein_name": "Small ribosomal subunit protein uS10", "gene_name": "RPS20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969Q0-1", "protein_name": "Ribosomal protein eL42-like", "gene_name": "RPL36AL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61247-1", "protein_name": "Small ribosomal subunit protein eS1", "gene_name": "RPS3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62854-1", "protein_name": "Small ribosomal subunit protein eS26", "gene_name": "RPS26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62851-1", "protein_name": "Small ribosomal subunit protein eS25", "gene_name": "RPS25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08865-1", "protein_name": "Small ribosomal subunit protein uS2", "gene_name": "RPSA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62847-1", "protein_name": "Small ribosomal subunit protein eS24", "gene_name": "RPS24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62861-1", "protein_name": "Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein", "gene_name": "FAU", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62241-1", "protein_name": "Small ribosomal subunit protein eS8", "gene_name": "RPS8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62277-1", "protein_name": "Small ribosomal subunit protein uS15", "gene_name": "RPS13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39019-1", "protein_name": "Small ribosomal subunit protein eS19", "gene_name": "RPS19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62269-1", "protein_name": "Small ribosomal subunit protein uS13", "gene_name": "RPS18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02878-1", "protein_name": "Large ribosomal subunit protein eL6", "gene_name": "RPL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62273-1", "protein_name": "Small ribosomal subunit protein uS14", "gene_name": "RPS29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61077-1", "protein_name": "Ubiquitin-conjugating enzyme E2 D3", "gene_name": "UBE2D3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51668-1", "protein_name": "Ubiquitin-conjugating enzyme E2 D1", "gene_name": "UBE2D1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N3C0-1", "protein_name": "Activating signal cointegrator 1 complex subunit 3", "gene_name": "ASCC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42677-1", "protein_name": "Small ribosomal subunit protein eS27", "gene_name": "RPS27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EH5-1", "protein_name": "Ribosomal protein eL39-like 2", "gene_name": "RPL39L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62263-1", "protein_name": "Small ribosomal subunit protein uS11", "gene_name": "RPS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61513-1", "protein_name": "Large ribosomal subunit protein eL43", "gene_name": "RPL37A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18124-1", "protein_name": "Large ribosomal subunit protein uL30", "gene_name": "RPL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15880-1", "protein_name": "Small ribosomal subunit protein uS5", "gene_name": "RPS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62750-1", "protein_name": "Large ribosomal subunit protein uL23", "gene_name": "RPL23A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62280-1", "protein_name": "Small ribosomal subunit protein uS17", "gene_name": "RPS11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62249-1", "protein_name": "Small ribosomal subunit protein uS9", "gene_name": "RPS16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50914-1", "protein_name": "Large ribosomal subunit protein eL14", "gene_name": "RPL14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62906-1", "protein_name": "Large ribosomal subunit protein uL1", "gene_name": "RPL10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23396-1", "protein_name": "Small ribosomal subunit protein uS3", "gene_name": "RPS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62841-1", "protein_name": "Small ribosomal subunit protein uS19", "gene_name": "RPS15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86UK7-1", "protein_name": "E3 ubiquitin-protein ligase ZNF598", "gene_name": "ZNF598", "tax_name": "Human" }, { "uniprot_canonical_ac": "C0HME6-1", "protein_name": "RPL36 alternative reading frame protein", "gene_name": "RPL36", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62829-1", "protein_name": "Large ribosomal subunit protein uL14", "gene_name": "RPL23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32969-1", "protein_name": "Large ribosomal subunit protein uL6", "gene_name": "RPL9P7; RPL9P8; RPL9P9; RPL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62837-1", "protein_name": "Ubiquitin-conjugating enzyme E2 D2", "gene_name": "UBE2D2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30050-1", "protein_name": "Large ribosomal subunit protein uL11", "gene_name": "RPL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62266-1", "protein_name": "Small ribosomal subunit protein uS12", "gene_name": "RPS23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46777-1", "protein_name": "Large ribosomal subunit protein uL18", "gene_name": "RPL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62753-1", "protein_name": "Small ribosomal subunit protein eS6", "gene_name": "RPS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27635-1", "protein_name": "Large ribosomal subunit protein uL16", "gene_name": "RPL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62913-1", "protein_name": "Large ribosomal subunit protein uL5", "gene_name": "RPL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36578-1", "protein_name": "Large ribosomal subunit protein uL4", "gene_name": "RPL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15650-1", "protein_name": "Activating signal cointegrator 1", "gene_name": "TRIP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05388-1", "protein_name": "Large ribosomal subunit protein uL10", "gene_name": "RPLP0", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG47-1", "protein_name": "Polyubiquitin-B", "gene_name": "UBB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46779-1", "protein_name": "Large ribosomal subunit protein eL28", "gene_name": "RPL28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62857-1", "protein_name": "Small ribosomal subunit protein eS28", "gene_name": "RPS28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61313-1", "protein_name": "Large ribosomal subunit protein eL15", "gene_name": "RPL15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62081-1", "protein_name": "Small ribosomal subunit protein eS7", "gene_name": "RPS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71UM5-1", "protein_name": "Ribosomal protein eS27-like", "gene_name": "RPS27L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG48-1", "protein_name": "Polyubiquitin-C", "gene_name": "UBC", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P18621", "url": "https://www.uniprot.org/uniprotkb/P18621" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 138, "end_pos": 139, "sequence_org": "KK", "sequence_mut": "RR", "comment": "Abolishes monoubiquitination by ZNF598, leading to enhanced readthrough on the poly(A)-stall sequences.", "evidence": [ { "database": "UniProtKB", "id": "P46783", "url": 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[] } ] }, { "title": "The E3 ubiquitin ligase and RNA-binding protein ZNF598 orchestrates ribosome quality control of premature polyadenylated mRNAs.", "journal": "Nature communications", "date": "2017", "authors": "Garzia A, Jafarnejad SM, Meyer C, Chapat C, Gogakos T, Morozov P, Amiri M, Shapiro M, Molina H, Tuschl T, Sonenberg N", "reference": { "type": "PubMed", "id": "28685749", "url": "https://pubmed.ncbi.nlm.nih.gov/28685749" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P18621-1", "protein_name": "Large ribosomal subunit protein uL22", "gene_name": "RPL17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46776-1", "protein_name": "Large ribosomal subunit protein uL15", "gene_name": "RPL27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46782-1", "protein_name": "Small ribosomal subunit protein uS7", "gene_name": "RPS5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47914-1", "protein_name": "Large ribosomal subunit protein eL29", 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ribosomal subunit protein P1", "gene_name": "RPLP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49207-1", "protein_name": "Large ribosomal subunit protein eL34", "gene_name": "RPL34", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62891-1", "protein_name": "Large ribosomal subunit protein eL39", "gene_name": "RPL39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96L21-1", "protein_name": "Ribosomal protein uL16-like", "gene_name": "RPL10L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26373-1", "protein_name": "Large ribosomal subunit protein eL13", "gene_name": "RPL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60866-1", "protein_name": "Small ribosomal subunit protein uS10", "gene_name": "RPS20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969Q0-1", "protein_name": "Ribosomal protein eL42-like", "gene_name": "RPL36AL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61247-1", "protein_name": "Small ribosomal subunit protein eS1", "gene_name": 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depression.", "journal": "Journal of psychiatric research", "date": "2018", "authors": "Hori H, Nakamura S, Yoshida F, Teraishi T, Sasayama D, Ota M, Hattori K, Kim Y, Higuchi T, Kunugi H", "reference": { "type": "PubMed", "id": "30103068", "url": "https://pubmed.ncbi.nlm.nih.gov/30103068" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P18621-1", "protein_name": "Large ribosomal subunit protein uL22", "gene_name": "RPL17", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P18621", "url": "https://www.uniprot.org/uniprotkb/P18621" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.30103068", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], 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protein uS14", "gene_name": "RPS29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61077-1", "protein_name": "Ubiquitin-conjugating enzyme E2 D3", "gene_name": "UBE2D3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51668-1", "protein_name": "Ubiquitin-conjugating enzyme E2 D1", "gene_name": "UBE2D1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N3C0-1", "protein_name": "Activating signal cointegrator 1 complex subunit 3", "gene_name": "ASCC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42677-1", "protein_name": "Small ribosomal subunit protein eS27", "gene_name": "RPS27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EH5-1", "protein_name": "Ribosomal protein eL39-like 2", "gene_name": "RPL39L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62263-1", "protein_name": "Small ribosomal subunit protein uS11", "gene_name": "RPS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61513-1", "protein_name": "Large ribosomal subunit protein eL43", "gene_name": "RPL37A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18124-1", "protein_name": "Large ribosomal subunit protein uL30", "gene_name": "RPL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15880-1", "protein_name": "Small ribosomal subunit protein uS5", "gene_name": "RPS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62750-1", "protein_name": "Large ribosomal subunit protein uL23", "gene_name": "RPL23A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62280-1", "protein_name": "Small ribosomal subunit protein uS17", "gene_name": "RPS11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62249-1", "protein_name": "Small ribosomal subunit protein uS9", "gene_name": "RPS16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50914-1", "protein_name": "Large ribosomal subunit protein eL14", "gene_name": "RPL14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62906-1", "protein_name": "Large ribosomal subunit protein uL1", "gene_name": "RPL10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23396-1", "protein_name": "Small ribosomal subunit protein uS3", "gene_name": "RPS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62841-1", "protein_name": "Small ribosomal subunit protein uS19", "gene_name": "RPS15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86UK7-1", "protein_name": "E3 ubiquitin-protein ligase ZNF598", "gene_name": "ZNF598", "tax_name": "Human" }, { "uniprot_canonical_ac": "C0HME6-1", "protein_name": "RPL36 alternative reading frame protein", "gene_name": "RPL36", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62829-1", "protein_name": "Large ribosomal subunit protein uL14", "gene_name": "RPL23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32969-1", "protein_name": "Large ribosomal subunit protein uL6", "gene_name": "RPL9P7; RPL9P8; RPL9P9; RPL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62837-1", "protein_name": "Ubiquitin-conjugating enzyme E2 D2", "gene_name": "UBE2D2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30050-1", "protein_name": "Large ribosomal subunit protein uL11", "gene_name": "RPL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62266-1", "protein_name": "Small ribosomal subunit protein uS12", "gene_name": "RPS23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46777-1", "protein_name": "Large ribosomal subunit protein uL18", "gene_name": "RPL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62753-1", "protein_name": "Small ribosomal subunit protein eS6", "gene_name": "RPS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27635-1", "protein_name": "Large ribosomal subunit protein uL16", "gene_name": "RPL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62913-1", "protein_name": "Large ribosomal subunit protein uL5", "gene_name": "RPL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36578-1", "protein_name": "Large ribosomal subunit protein uL4", "gene_name": "RPL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15650-1", "protein_name": "Activating signal cointegrator 1", "gene_name": "TRIP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05388-1", "protein_name": "Large ribosomal subunit protein uL10", "gene_name": "RPLP0", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG47-1", "protein_name": "Polyubiquitin-B", "gene_name": "UBB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46779-1", "protein_name": "Large ribosomal subunit protein eL28", "gene_name": "RPL28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62857-1", "protein_name": "Small ribosomal subunit protein eS28", "gene_name": "RPS28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61313-1", "protein_name": "Large ribosomal subunit protein eL15", "gene_name": "RPL15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62081-1", "protein_name": "Small ribosomal subunit protein eS7", "gene_name": "RPS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71UM5-1", "protein_name": "Ribosomal protein eS27-like", "gene_name": "RPS27L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG48-1", "protein_name": "Polyubiquitin-C", "gene_name": "UBC", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P18621", "url": "https://www.uniprot.org/uniprotkb/P18621" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.30293783", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 97 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Activation of GCN2 by the ribosomal P-stalk.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2019", "authors": "Inglis AJ, Masson GR, Shao S, Perisic O, McLaughlin SH, Hegde RS, Williams RL", "reference": { "type": "PubMed", "id": "30804176", "url": "https://pubmed.ncbi.nlm.nih.gov/30804176" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P18621-1", "protein_name": "Large ribosomal subunit protein uL22", "gene_name": "RPL17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46776-1", "protein_name": "Large ribosomal subunit protein uL15", "gene_name": "RPL27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46782-1", "protein_name": "Small ribosomal subunit protein uS7", "gene_name": "RPS5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47914-1", "protein_name": "Large ribosomal subunit protein eL29", "gene_name": "RPL29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62244-1", "protein_name": "Small ribosomal subunit protein uS8", "gene_name": "RPS15A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22090-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 1", "gene_name": "RPS4Y1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P5R6-1", "protein_name": "Ribosomal protein eL22-like", "gene_name": "RPL22L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08708-1", "protein_name": "Small ribosomal subunit protein eS17", "gene_name": "RPS17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46783-1", "protein_name": "Small ribosomal subunit protein eS10", "gene_name": "RPS10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62917-1", "protein_name": "Large ribosomal subunit protein uL2", "gene_name": "RPL8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25398-1", "protein_name": "Small ribosomal subunit protein eS12", "gene_name": "RPS12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46781-1", "protein_name": "Small ribosomal subunit protein uS4", "gene_name": "RPS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62424-1", "protein_name": "Large ribosomal subunit protein eL8", "gene_name": "RPL7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62701-1", "protein_name": "Small ribosomal subunit protein eS4, X isoform", "gene_name": "RPS4X", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63220-1", "protein_name": "Small ribosomal subunit protein eS21", "gene_name": "RPS21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TD47-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 2", "gene_name": "RPS4Y2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96RU7-1", "protein_name": "Tribbles homolog 3", "gene_name": "TRIB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08243-1", "protein_name": "Asparagine synthetase [glutamine-hydrolyzing]", "gene_name": "ASNS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53567-1", "protein_name": "CCAAT/enhancer-binding protein gamma", "gene_name": "CEBPG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18847-1", "protein_name": "Cyclic AMP-dependent transcription factor ATF-3", "gene_name": "ATF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35638-1", "protein_name": "DNA damage-inducible transcript 3 protein", "gene_name": "DDIT3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15336-1", "protein_name": "Cyclic AMP-dependent transcription factor ATF-2", "gene_name": "ATF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18848-1", "protein_name": "Cyclic AMP-dependent transcription factor ATF-4", "gene_name": "ATF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07020-1", "protein_name": "Large ribosomal subunit protein eL18", "gene_name": "RPL18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35268-1", "protein_name": "Large ribosomal subunit protein eL22", "gene_name": "RPL22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83881-1", "protein_name": "Large ribosomal subunit protein eL42", "gene_name": "RPL36A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61353-1", "protein_name": "Large ribosomal subunit protein eL27", "gene_name": "RPL27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNX3-1", "protein_name": "Ribosomal protein uL24-like", "gene_name": "RPL26L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02543-1", "protein_name": "Large ribosomal subunit protein eL20", "gene_name": "RPL18A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40429-1", "protein_name": "Large ribosomal subunit protein uL13", "gene_name": "RPL13A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63173-1", "protein_name": "Large ribosomal subunit protein eL38", "gene_name": "RPL38", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62910-1", "protein_name": "Large ribosomal subunit protein eL32", "gene_name": "RPL32", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39023-1", "protein_name": "Large ribosomal subunit protein uL3", "gene_name": "RPL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18077-1", "protein_name": "Large ribosomal subunit protein eL33", "gene_name": "RPL35A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61254-1", "protein_name": "Large ribosomal subunit protein uL24", "gene_name": "RPL26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84098-1", "protein_name": "Large ribosomal subunit protein eL19", "gene_name": "RPL19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62888-1", "protein_name": "Large ribosomal subunit protein eL30", "gene_name": "RPL30", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83731-1", "protein_name": "Large ribosomal subunit protein eL24", "gene_name": "RPL24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62899-1", "protein_name": "Large ribosomal subunit protein eL31", "gene_name": "RPL31", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62945-1", "protein_name": "Small ribosomal subunit protein eS32", "gene_name": "RPL41", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61927-1", "protein_name": "Large ribosomal subunit protein eL37", "gene_name": "RPL37", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42766-1", "protein_name": "Large ribosomal subunit protein uL29", "gene_name": "RPL35", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05387-1", "protein_name": "Large ribosomal subunit protein P2", "gene_name": "RPLP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92901-1", "protein_name": "Ribosomal protein uL3-like", "gene_name": "RPL3L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46778-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "RPL21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05386-1", "protein_name": "Large ribosomal subunit protein P1", "gene_name": "RPLP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49207-1", "protein_name": "Large ribosomal subunit protein eL34", "gene_name": "RPL34", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62891-1", "protein_name": "Large ribosomal subunit protein eL39", "gene_name": "RPL39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96L21-1", "protein_name": "Ribosomal protein uL16-like", "gene_name": "RPL10L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26373-1", "protein_name": "Large ribosomal subunit protein eL13", "gene_name": "RPL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60866-1", "protein_name": "Small ribosomal subunit protein uS10", "gene_name": "RPS20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969Q0-1", "protein_name": "Ribosomal protein eL42-like", "gene_name": "RPL36AL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61247-1", "protein_name": "Small ribosomal subunit protein eS1", "gene_name": "RPS3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P2X3-1", "protein_name": "Protein IMPACT", "gene_name": "IMPACT", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62854-1", "protein_name": "Small ribosomal subunit protein eS26", "gene_name": "RPS26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62851-1", "protein_name": "Small ribosomal subunit protein eS25", "gene_name": "RPS25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08865-1", "protein_name": "Small ribosomal subunit protein uS2", "gene_name": "RPSA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62847-1", "protein_name": "Small ribosomal subunit protein eS24", "gene_name": "RPS24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62861-1", "protein_name": "Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein", "gene_name": "FAU", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62241-1", "protein_name": "Small ribosomal subunit protein eS8", "gene_name": "RPS8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62277-1", "protein_name": "Small ribosomal subunit protein uS15", "gene_name": "RPS13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39019-1", "protein_name": "Small ribosomal subunit protein eS19", "gene_name": "RPS19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62269-1", "protein_name": "Small ribosomal subunit protein uS13", "gene_name": "RPS18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02878-1", "protein_name": "Large ribosomal subunit protein eL6", "gene_name": "RPL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62273-1", "protein_name": "Small ribosomal subunit protein uS14", "gene_name": "RPS29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17676-1", "protein_name": "CCAAT/enhancer-binding protein beta", "gene_name": "CEBPB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20042-1", "protein_name": "Eukaryotic translation initiation factor 2 subunit 2", "gene_name": "EIF2S2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42677-1", "protein_name": "Small ribosomal subunit protein eS27", "gene_name": "RPS27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EH5-1", "protein_name": "Ribosomal protein eL39-like 2", "gene_name": "RPL39L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62263-1", "protein_name": "Small ribosomal subunit protein uS11", "gene_name": "RPS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61513-1", "protein_name": "Large ribosomal subunit protein eL43", "gene_name": "RPL37A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18124-1", "protein_name": "Large ribosomal subunit protein uL30", "gene_name": "RPL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15880-1", "protein_name": "Small ribosomal subunit protein uS5", "gene_name": "RPS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62750-1", "protein_name": "Large ribosomal subunit protein uL23", "gene_name": "RPL23A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62280-1", "protein_name": "Small ribosomal subunit protein uS17", "gene_name": "RPS11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62249-1", "protein_name": "Small ribosomal subunit protein uS9", "gene_name": "RPS16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50914-1", "protein_name": "Large ribosomal subunit protein eL14", "gene_name": "RPL14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62906-1", "protein_name": "Large ribosomal subunit protein uL1", "gene_name": "RPL10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23396-1", "protein_name": "Small ribosomal subunit protein uS3", "gene_name": "RPS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05198-1", "protein_name": "Eukaryotic translation initiation factor 2 subunit 1", "gene_name": "EIF2S1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62841-1", "protein_name": "Small ribosomal subunit protein uS19", "gene_name": "RPS15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92616-1", "protein_name": "Stalled ribosome sensor GCN1", "gene_name": "GCN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "C0HME6-1", "protein_name": "RPL36 alternative reading frame protein", "gene_name": "RPL36", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62829-1", "protein_name": "Large ribosomal subunit protein uL14", "gene_name": "RPL23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32969-1", "protein_name": "Large ribosomal subunit protein uL6", "gene_name": "RPL9P7; RPL9P8; RPL9P9; RPL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30050-1", "protein_name": "Large ribosomal subunit protein uL11", "gene_name": "RPL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62266-1", "protein_name": "Small ribosomal subunit protein uS12", "gene_name": "RPS23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46777-1", "protein_name": "Large ribosomal subunit protein uL18", "gene_name": "RPL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P2K8-1", "protein_name": "eIF-2-alpha kinase GCN2", "gene_name": "EIF2AK4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41091-1", "protein_name": "Eukaryotic translation initiation factor 2 subunit 3", "gene_name": "EIF2S3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62753-1", "protein_name": "Small ribosomal subunit protein eS6", "gene_name": "RPS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27635-1", "protein_name": "Large ribosomal subunit protein uL16", "gene_name": "RPL10", "tax_name": "Human" }, { 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"protein_name": "Large ribosomal subunit protein uL10", "gene_name": "RPLP0", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG47-1", "protein_name": "Polyubiquitin-B", "gene_name": "UBB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46779-1", "protein_name": "Large ribosomal subunit protein eL28", "gene_name": "RPL28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62857-1", "protein_name": "Small ribosomal subunit protein eS28", "gene_name": "RPS28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61313-1", "protein_name": "Large ribosomal subunit protein eL15", "gene_name": "RPL15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62081-1", "protein_name": "Small ribosomal subunit protein eS7", "gene_name": "RPS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71UM5-1", "protein_name": "Ribosomal protein 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"protein_name": "Large ribosomal subunit protein eL29", "gene_name": "RPL29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62917-1", "protein_name": "Large ribosomal subunit protein uL2", "gene_name": "RPL8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62424-1", "protein_name": "Large ribosomal subunit protein eL8", "gene_name": "RPL7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96D46-1", "protein_name": "60S ribosomal export protein NMD3", "gene_name": "NMD3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07020-1", "protein_name": "Large ribosomal subunit protein eL18", "gene_name": "RPL18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35268-1", "protein_name": "Large ribosomal subunit protein eL22", "gene_name": "RPL22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83881-1", "protein_name": "Large ribosomal subunit protein eL42", "gene_name": "RPL36A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61353-1", "protein_name": "Large ribosomal subunit protein eL27", "gene_name": "RPL27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02543-1", "protein_name": "Large ribosomal subunit protein eL20", "gene_name": "RPL18A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40429-1", "protein_name": "Large ribosomal subunit protein uL13", "gene_name": "RPL13A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63173-1", "protein_name": "Large ribosomal subunit protein eL38", "gene_name": "RPL38", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62910-1", "protein_name": "Large ribosomal subunit protein eL32", "gene_name": "RPL32", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39023-1", "protein_name": "Large ribosomal subunit protein uL3", "gene_name": "RPL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18077-1", "protein_name": "Large ribosomal subunit protein eL33", "gene_name": "RPL35A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61254-1", "protein_name": "Large ribosomal subunit protein uL24", "gene_name": "RPL26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84098-1", "protein_name": "Large ribosomal subunit protein eL19", "gene_name": "RPL19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62888-1", "protein_name": "Large ribosomal subunit protein eL30", "gene_name": "RPL30", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83731-1", "protein_name": "Large ribosomal subunit protein eL24", "gene_name": "RPL24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62899-1", "protein_name": "Large ribosomal subunit protein eL31", "gene_name": "RPL31", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61927-1", "protein_name": "Large ribosomal subunit protein eL37", "gene_name": "RPL37", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42766-1", "protein_name": "Large ribosomal subunit protein uL29", "gene_name": "RPL35", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46778-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "RPL21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49207-1", "protein_name": "Large ribosomal subunit protein eL34", "gene_name": "RPL34", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62891-1", "protein_name": "Large ribosomal subunit protein eL39", "gene_name": "RPL39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96L21-1", "protein_name": "Ribosomal protein uL16-like", "gene_name": "RPL10L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26373-1", "protein_name": "Large ribosomal subunit protein eL13", "gene_name": "RPL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02878-1", "protein_name": "Large ribosomal subunit protein eL6", "gene_name": "RPL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHA3-1", "protein_name": "Probable ribosome biogenesis protein RLP24", "gene_name": "RSL24D1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969S3-1", "protein_name": "Cytoplasmic 60S subunit biogenesis factor ZNF622", "gene_name": "ZNF622", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EY4-1", "protein_name": "Translation machinery-associated protein 16", "gene_name": "TMA16", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00488-1", "protein_name": "Zinc finger protein 593", "gene_name": "ZNF593", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61513-1", "protein_name": "Large ribosomal subunit protein eL43", "gene_name": "RPL37A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18124-1", "protein_name": "Large ribosomal subunit protein uL30", "gene_name": "RPL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13823-1", "protein_name": "Nucleolar GTP-binding protein 2", "gene_name": "GNL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62750-1", "protein_name": "Large ribosomal subunit protein uL23", "gene_name": "RPL23A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50914-1", "protein_name": "Large ribosomal subunit protein eL14", "gene_name": "RPL14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62906-1", "protein_name": "Large ribosomal subunit protein uL1", "gene_name": "RPL10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZE4-1", "protein_name": "GTP-binding protein 4", "gene_name": "GTPBP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "C0HME6-1", "protein_name": "RPL36 alternative reading frame protein", "gene_name": "RPL36", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62829-1", "protein_name": "Large ribosomal subunit protein uL14", "gene_name": "RPL23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32969-1", "protein_name": "Large ribosomal subunit protein uL6", "gene_name": "RPL9P7; RPL9P8; RPL9P9; RPL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P56537-1", "protein_name": "Eukaryotic translation initiation factor 6", "gene_name": "EIF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46777-1", "protein_name": "Large ribosomal subunit protein uL18", "gene_name": "RPL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62913-1", "protein_name": "Large ribosomal subunit protein uL5", "gene_name": "RPL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36578-1", "protein_name": "Large ribosomal subunit protein uL4", "gene_name": "RPL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46779-1", "protein_name": "Large ribosomal subunit protein eL28", "gene_name": "RPL28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61313-1", "protein_name": "Large ribosomal subunit protein eL15", "gene_name": "RPL15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRT6-1", "protein_name": "Protein LLP homolog", "gene_name": "LLPH", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P18621", "url": "https://www.uniprot.org/uniprotkb/P18621" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.32669547", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 51 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A distinct mammalian disome collision interface harbors K63-linked polyubiquitination of uS10 to trigger hRQT-mediated subunit dissociation.", "journal": "Nature communications", "date": "2022-10-27", "authors": "Narita Momoko, Denk Timo, Matsuo Yoshitaka, Sugiyama Takato, Kikuguchi Chisato, Ito Sota, Sato Nichika, Suzuki Toru, Hashimoto Satoshi, Machov\u00e1 Iva, Tesina Petr, Beckmann Roland, Inada Toshifumi", "reference": { "type": "PubMed", "id": "36302773", "url": "https://pubmed.ncbi.nlm.nih.gov/36302773" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P18621-1", "protein_name": "Large ribosomal subunit protein uL22", "gene_name": "RPL17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46776-1", "protein_name": "Large ribosomal subunit protein uL15", "gene_name": "RPL27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46782-1", "protein_name": "Small ribosomal subunit protein uS7", "gene_name": "RPS5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47914-1", "protein_name": "Large ribosomal subunit protein eL29", "gene_name": "RPL29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62244-1", "protein_name": "Small ribosomal subunit protein uS8", "gene_name": "RPS15A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22090-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 1", "gene_name": "RPS4Y1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P5R6-1", "protein_name": "Ribosomal protein eL22-like", "gene_name": "RPL22L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08708-1", "protein_name": "Small ribosomal subunit protein eS17", "gene_name": "RPS17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46783-1", "protein_name": "Small ribosomal subunit protein eS10", "gene_name": "RPS10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62917-1", "protein_name": "Large ribosomal subunit protein uL2", "gene_name": "RPL8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25398-1", "protein_name": "Small ribosomal subunit protein eS12", "gene_name": "RPS12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46781-1", "protein_name": "Small ribosomal subunit protein uS4", "gene_name": "RPS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62424-1", "protein_name": "Large ribosomal subunit protein eL8", "gene_name": "RPL7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62701-1", "protein_name": "Small ribosomal subunit protein eS4, X isoform", "gene_name": "RPS4X", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63220-1", "protein_name": "Small ribosomal subunit protein eS21", "gene_name": "RPS21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TD47-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 2", "gene_name": "RPS4Y2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H1I8-1", "protein_name": "Activating signal cointegrator 1 complex subunit 2", "gene_name": "ASCC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07020-1", "protein_name": "Large ribosomal subunit protein eL18", "gene_name": "RPL18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35268-1", "protein_name": "Large ribosomal subunit protein eL22", "gene_name": "RPL22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83881-1", "protein_name": "Large ribosomal subunit protein eL42", "gene_name": "RPL36A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61353-1", "protein_name": "Large ribosomal subunit protein eL27", "gene_name": "RPL27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNX3-1", "protein_name": "Ribosomal protein uL24-like", "gene_name": "RPL26L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02543-1", "protein_name": "Large ribosomal subunit protein eL20", "gene_name": "RPL18A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40429-1", "protein_name": "Large ribosomal subunit protein uL13", "gene_name": "RPL13A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63173-1", "protein_name": "Large ribosomal subunit protein eL38", "gene_name": "RPL38", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62910-1", "protein_name": "Large ribosomal subunit protein eL32", "gene_name": "RPL32", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39023-1", "protein_name": "Large ribosomal subunit protein uL3", "gene_name": "RPL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18077-1", "protein_name": "Large ribosomal subunit protein eL33", "gene_name": "RPL35A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61254-1", "protein_name": "Large ribosomal subunit protein uL24", "gene_name": "RPL26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84098-1", "protein_name": "Large ribosomal subunit protein eL19", "gene_name": "RPL19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62888-1", "protein_name": "Large ribosomal subunit protein eL30", "gene_name": "RPL30", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83731-1", "protein_name": "Large ribosomal subunit protein eL24", "gene_name": "RPL24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62899-1", "protein_name": "Large ribosomal subunit protein eL31", "gene_name": "RPL31", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62945-1", "protein_name": "Small ribosomal subunit protein eS32", "gene_name": "RPL41", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61927-1", "protein_name": "Large ribosomal subunit protein eL37", "gene_name": "RPL37", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42766-1", "protein_name": "Large ribosomal subunit protein uL29", "gene_name": "RPL35", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05387-1", "protein_name": "Large ribosomal subunit protein P2", "gene_name": "RPLP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92901-1", "protein_name": "Ribosomal protein uL3-like", "gene_name": "RPL3L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46778-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "RPL21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05386-1", "protein_name": "Large ribosomal subunit protein P1", "gene_name": "RPLP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49207-1", "protein_name": "Large ribosomal subunit protein eL34", "gene_name": "RPL34", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62891-1", "protein_name": "Large ribosomal subunit protein eL39", "gene_name": "RPL39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96L21-1", "protein_name": "Ribosomal protein uL16-like", "gene_name": "RPL10L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26373-1", "protein_name": "Large ribosomal subunit protein eL13", "gene_name": "RPL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60866-1", "protein_name": "Small ribosomal subunit protein uS10", "gene_name": "RPS20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969Q0-1", "protein_name": "Ribosomal protein eL42-like", "gene_name": "RPL36AL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61247-1", "protein_name": "Small ribosomal subunit protein eS1", "gene_name": "RPS3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62854-1", "protein_name": "Small ribosomal subunit protein eS26", "gene_name": "RPS26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62851-1", "protein_name": "Small ribosomal subunit protein eS25", "gene_name": "RPS25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08865-1", "protein_name": "Small ribosomal subunit protein uS2", "gene_name": "RPSA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62847-1", "protein_name": "Small ribosomal subunit protein eS24", "gene_name": "RPS24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62861-1", "protein_name": "Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein", "gene_name": "FAU", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62241-1", "protein_name": "Small ribosomal subunit protein eS8", "gene_name": "RPS8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62277-1", "protein_name": "Small ribosomal subunit protein uS15", "gene_name": "RPS13", "tax_name": "Human" }, { 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"protein_name": "Large ribosomal subunit protein eL13", "gene_name": "RPL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60866-1", "protein_name": "Small ribosomal subunit protein uS10", "gene_name": "RPS20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969Q0-1", "protein_name": "Ribosomal protein eL42-like", "gene_name": "RPL36AL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61247-1", "protein_name": "Small ribosomal subunit protein eS1", "gene_name": "RPS3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62854-1", "protein_name": "Small ribosomal subunit protein eS26", "gene_name": "RPS26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62851-1", "protein_name": "Small ribosomal subunit protein eS25", "gene_name": "RPS25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08865-1", "protein_name": "Small ribosomal subunit protein uS2", "gene_name": "RPSA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62847-1", "protein_name": "Small ribosomal subunit protein eS24", "gene_name": "RPS24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62861-1", "protein_name": "Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein", "gene_name": "FAU", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62241-1", "protein_name": "Small ribosomal subunit protein eS8", "gene_name": "RPS8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62277-1", "protein_name": "Small ribosomal subunit protein uS15", "gene_name": "RPS13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39019-1", "protein_name": "Small ribosomal subunit protein eS19", "gene_name": "RPS19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62269-1", "protein_name": "Small ribosomal subunit protein uS13", "gene_name": "RPS18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02878-1", "protein_name": "Large ribosomal subunit protein eL6", "gene_name": "RPL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62273-1", "protein_name": "Small ribosomal subunit protein uS14", "gene_name": "RPS29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42677-1", "protein_name": "Small ribosomal subunit protein eS27", "gene_name": "RPS27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EH5-1", "protein_name": "Ribosomal protein eL39-like 2", "gene_name": "RPL39L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62263-1", "protein_name": "Small ribosomal subunit protein uS11", "gene_name": "RPS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61513-1", "protein_name": "Large ribosomal subunit protein eL43", "gene_name": "RPL37A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18124-1", "protein_name": "Large ribosomal subunit protein uL30", "gene_name": "RPL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15880-1", "protein_name": "Small ribosomal subunit protein uS5", "gene_name": "RPS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62750-1", "protein_name": "Large ribosomal subunit protein uL23", "gene_name": "RPL23A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62280-1", "protein_name": "Small ribosomal subunit protein uS17", "gene_name": "RPS11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62249-1", "protein_name": "Small ribosomal subunit protein uS9", "gene_name": "RPS16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50914-1", "protein_name": "Large ribosomal subunit protein eL14", "gene_name": "RPL14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62906-1", "protein_name": "Large ribosomal subunit protein uL1", "gene_name": "RPL10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23396-1", "protein_name": "Small ribosomal subunit protein uS3", "gene_name": "RPS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68104-1", "protein_name": "Elongation factor 1-alpha 1", "gene_name": "EEF1A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62841-1", "protein_name": "Small ribosomal subunit protein uS19", "gene_name": "RPS15", "tax_name": "Human" }, { "uniprot_canonical_ac": "C0HME6-1", "protein_name": "RPL36 alternative reading frame protein", "gene_name": "RPL36", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62829-1", "protein_name": "Large ribosomal subunit protein uL14", "gene_name": "RPL23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32969-1", "protein_name": "Large ribosomal subunit protein uL6", "gene_name": "RPL9P7; RPL9P8; RPL9P9; RPL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30050-1", "protein_name": "Large ribosomal subunit protein uL11", "gene_name": "RPL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62266-1", "protein_name": "Small ribosomal subunit protein uS12", "gene_name": "RPS23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46777-1", "protein_name": "Large ribosomal subunit protein uL18", "gene_name": "RPL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62753-1", "protein_name": "Small ribosomal subunit protein eS6", "gene_name": "RPS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27635-1", "protein_name": "Large ribosomal subunit protein uL16", "gene_name": "RPL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62913-1", "protein_name": "Large ribosomal subunit protein uL5", "gene_name": "RPL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36578-1", "protein_name": "Large ribosomal subunit protein uL4", "gene_name": "RPL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05388-1", "protein_name": "Large ribosomal subunit protein uL10", "gene_name": "RPLP0", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46779-1", "protein_name": "Large ribosomal subunit protein eL28", "gene_name": "RPL28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62857-1", "protein_name": "Small ribosomal subunit protein eS28", "gene_name": "RPS28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13639-1", "protein_name": "Elongation factor 2", "gene_name": "EEF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61313-1", "protein_name": "Large ribosomal subunit protein eL15", "gene_name": "RPL15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62081-1", "protein_name": "Small ribosomal subunit protein eS7", "gene_name": "RPS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71UM5-1", "protein_name": "Ribosomal protein eS27-like", "gene_name": "RPS27L", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P18621", "url": "https://www.uniprot.org/uniprotkb/P18621" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.6568109", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 90 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A highly conserved eukaryotic protein family possessing properties of polypeptide chain release factor.", "journal": "Nature", "date": "1994", "authors": "Frolova L, Le Goff X, Rasmussen HH, Cheperegin S, Drugeon G, Kress M, Arman I, Haenni AL, Celis JE, Philippe M, et al.", "reference": { "type": "PubMed", "id": "7990965", "url": "https://pubmed.ncbi.nlm.nih.gov/7990965" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P18621-1", "protein_name": "Large ribosomal subunit protein uL22", "gene_name": "RPL17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46776-1", "protein_name": "Large ribosomal subunit protein uL15", "gene_name": "RPL27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46782-1", "protein_name": "Small ribosomal subunit protein uS7", "gene_name": "RPS5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47914-1", "protein_name": "Large ribosomal subunit protein eL29", "gene_name": "RPL29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62244-1", "protein_name": "Small ribosomal subunit protein uS8", "gene_name": "RPS15A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22090-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 1", "gene_name": "RPS4Y1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P5R6-1", "protein_name": "Ribosomal protein eL22-like", "gene_name": "RPL22L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08708-1", "protein_name": "Small ribosomal subunit protein eS17", "gene_name": "RPS17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46783-1", "protein_name": "Small ribosomal subunit protein eS10", "gene_name": "RPS10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62917-1", "protein_name": "Large ribosomal subunit protein uL2", "gene_name": "RPL8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25398-1", "protein_name": "Small ribosomal subunit protein eS12", "gene_name": "RPS12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46781-1", "protein_name": "Small ribosomal subunit protein uS4", "gene_name": "RPS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62424-1", "protein_name": "Large ribosomal subunit protein eL8", "gene_name": "RPL7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62701-1", "protein_name": "Small ribosomal subunit protein eS4, X isoform", "gene_name": "RPS4X", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63220-1", "protein_name": "Small ribosomal subunit protein eS21", "gene_name": "RPS21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TD47-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 2", "gene_name": "RPS4Y2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UI30-1", "protein_name": "Multifunctional methyltransferase subunit TRM112-like protein", "gene_name": "TRMT112", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07020-1", "protein_name": "Large ribosomal subunit protein eL18", "gene_name": "RPL18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35268-1", "protein_name": "Large ribosomal subunit protein eL22", "gene_name": "RPL22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83881-1", "protein_name": "Large ribosomal subunit protein eL42", "gene_name": "RPL36A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61353-1", "protein_name": "Large ribosomal subunit protein eL27", "gene_name": "RPL27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNX3-1", "protein_name": "Ribosomal protein uL24-like", "gene_name": "RPL26L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02543-1", "protein_name": "Large ribosomal subunit protein eL20", "gene_name": "RPL18A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40429-1", "protein_name": "Large ribosomal subunit protein uL13", "gene_name": "RPL13A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63173-1", "protein_name": "Large ribosomal subunit protein eL38", "gene_name": "RPL38", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62910-1", "protein_name": "Large ribosomal subunit protein eL32", "gene_name": "RPL32", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39023-1", "protein_name": "Large ribosomal subunit protein uL3", "gene_name": "RPL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18077-1", "protein_name": "Large ribosomal subunit protein eL33", "gene_name": "RPL35A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61254-1", "protein_name": "Large ribosomal subunit protein uL24", "gene_name": "RPL26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84098-1", "protein_name": "Large ribosomal subunit protein eL19", "gene_name": "RPL19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62888-1", "protein_name": "Large ribosomal subunit protein eL30", "gene_name": "RPL30", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83731-1", "protein_name": "Large ribosomal subunit protein eL24", "gene_name": "RPL24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62899-1", "protein_name": "Large ribosomal subunit protein eL31", "gene_name": "RPL31", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62945-1", "protein_name": "Small ribosomal subunit protein eS32", "gene_name": "RPL41", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61927-1", "protein_name": "Large ribosomal subunit protein eL37", "gene_name": "RPL37", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42766-1", "protein_name": "Large ribosomal subunit protein uL29", "gene_name": "RPL35", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05387-1", "protein_name": "Large ribosomal subunit protein P2", "gene_name": "RPLP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92901-1", "protein_name": "Ribosomal protein uL3-like", "gene_name": "RPL3L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46778-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "RPL21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05386-1", "protein_name": "Large ribosomal subunit protein P1", "gene_name": "RPLP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49207-1", "protein_name": "Large ribosomal subunit protein eL34", "gene_name": "RPL34", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62891-1", "protein_name": "Large ribosomal subunit protein eL39", "gene_name": "RPL39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96L21-1", "protein_name": "Ribosomal protein uL16-like", "gene_name": "RPL10L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26373-1", "protein_name": "Large ribosomal subunit protein eL13", "gene_name": "RPL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYD1-1", "protein_name": "Eukaryotic peptide chain release factor GTP-binding subunit ERF3B", "gene_name": "GSPT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60866-1", "protein_name": "Small ribosomal subunit protein uS10", "gene_name": "RPS20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969Q0-1", "protein_name": "Ribosomal protein eL42-like", "gene_name": "RPL36AL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61247-1", "protein_name": "Small ribosomal subunit protein eS1", "gene_name": "RPS3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62854-1", "protein_name": "Small ribosomal subunit protein eS26", "gene_name": "RPS26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62851-1", "protein_name": "Small ribosomal subunit protein eS25", "gene_name": "RPS25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08865-1", "protein_name": "Small ribosomal subunit protein uS2", "gene_name": "RPSA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62847-1", "protein_name": "Small ribosomal subunit protein eS24", "gene_name": "RPS24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62861-1", "protein_name": "Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein", "gene_name": "FAU", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62241-1", "protein_name": "Small ribosomal subunit protein eS8", "gene_name": "RPS8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62277-1", "protein_name": "Small ribosomal subunit protein uS15", "gene_name": "RPS13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39019-1", "protein_name": "Small ribosomal subunit protein eS19", "gene_name": "RPS19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62269-1", "protein_name": "Small ribosomal subunit protein uS13", "gene_name": "RPS18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02878-1", "protein_name": "Large ribosomal subunit protein eL6", "gene_name": "RPL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62273-1", "protein_name": "Small ribosomal subunit protein uS14", "gene_name": "RPS29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42677-1", "protein_name": "Small ribosomal subunit protein eS27", "gene_name": "RPS27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EH5-1", "protein_name": "Ribosomal protein eL39-like 2", "gene_name": "RPL39L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62263-1", "protein_name": "Small ribosomal subunit protein uS11", "gene_name": "RPS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61513-1", "protein_name": "Large ribosomal subunit protein eL43", "gene_name": "RPL37A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18124-1", "protein_name": "Large ribosomal subunit protein uL30", "gene_name": "RPL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15880-1", "protein_name": "Small ribosomal subunit protein uS5", "gene_name": "RPS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62750-1", "protein_name": "Large ribosomal subunit protein uL23", "gene_name": "RPL23A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62280-1", "protein_name": "Small ribosomal subunit protein uS17", "gene_name": "RPS11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62249-1", "protein_name": "Small ribosomal subunit protein uS9", "gene_name": "RPS16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50914-1", "protein_name": "Large ribosomal subunit protein eL14", "gene_name": "RPL14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62906-1", "protein_name": "Large ribosomal subunit protein uL1", "gene_name": "RPL10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23396-1", "protein_name": "Small ribosomal subunit protein uS3", "gene_name": "RPS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62841-1", "protein_name": "Small ribosomal subunit protein uS19", "gene_name": "RPS15", "tax_name": "Human" }, { "uniprot_canonical_ac": "C0HME6-1", "protein_name": "RPL36 alternative reading frame protein", "gene_name": "RPL36", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62829-1", "protein_name": "Large ribosomal subunit protein uL14", "gene_name": "RPL23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32969-1", "protein_name": "Large ribosomal subunit protein uL6", "gene_name": "RPL9P7; RPL9P8; RPL9P9; RPL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30050-1", "protein_name": "Large ribosomal subunit protein uL11", "gene_name": "RPL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62266-1", "protein_name": "Small ribosomal subunit protein uS12", "gene_name": "RPS23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46777-1", "protein_name": "Large ribosomal subunit protein uL18", "gene_name": "RPL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62753-1", "protein_name": "Small ribosomal subunit protein eS6", "gene_name": "RPS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27635-1", "protein_name": "Large ribosomal subunit protein uL16", "gene_name": "RPL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62913-1", "protein_name": "Large ribosomal subunit protein uL5", "gene_name": "RPL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36578-1", "protein_name": "Large ribosomal subunit protein uL4", "gene_name": "RPL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05388-1", "protein_name": "Large ribosomal subunit protein uL10", "gene_name": "RPLP0", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46779-1", "protein_name": "Large ribosomal subunit protein eL28", "gene_name": "RPL28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62857-1", "protein_name": "Small ribosomal subunit protein eS28", "gene_name": "RPS28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15170-1", "protein_name": "Eukaryotic peptide chain release factor GTP-binding subunit ERF3A", "gene_name": "GSPT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62495-1", "protein_name": "Eukaryotic peptide chain release factor subunit 1", "gene_name": "ETF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5N5-1", "protein_name": "Methyltransferase HEMK2", "gene_name": "HEMK2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61313-1", "protein_name": "Large ribosomal subunit protein eL15", "gene_name": "RPL15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62081-1", "protein_name": "Small ribosomal subunit protein eS7", "gene_name": "RPS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71UM5-1", "protein_name": "Ribosomal protein eS27-like", "gene_name": "RPS27L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13798-1", "protein_name": "Acylamino-acid-releasing enzyme", "gene_name": "APEH", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P18621", "url": "https://www.uniprot.org/uniprotkb/P18621" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.7990965", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 94 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Regulation of the C/EBP-related gene gadd153 by glucose deprivation.", "journal": "Molecular and cellular biology", "date": "1993", "authors": "Carlson SG, Fawcett TW, Bartlett JD, Bernier M, Holbrook NJ", "reference": { "type": "PubMed", "id": "8336711", "url": "https://pubmed.ncbi.nlm.nih.gov/8336711" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P18621-1", "protein_name": "Large ribosomal subunit protein uL22", "gene_name": "RPL17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46776-1", "protein_name": "Large ribosomal subunit protein uL15", "gene_name": "RPL27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46782-1", "protein_name": "Small ribosomal subunit protein uS7", "gene_name": "RPS5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47914-1", "protein_name": "Large ribosomal subunit protein eL29", "gene_name": "RPL29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62244-1", "protein_name": "Small ribosomal subunit protein uS8", "gene_name": "RPS15A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22090-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 1", "gene_name": "RPS4Y1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P5R6-1", "protein_name": "Ribosomal protein eL22-like", "gene_name": "RPL22L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08708-1", "protein_name": "Small ribosomal subunit protein eS17", "gene_name": "RPS17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46783-1", "protein_name": "Small ribosomal subunit protein eS10", "gene_name": "RPS10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62917-1", "protein_name": "Large ribosomal subunit protein uL2", "gene_name": "RPL8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25398-1", "protein_name": "Small ribosomal subunit protein eS12", "gene_name": "RPS12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46781-1", "protein_name": "Small ribosomal subunit protein uS4", "gene_name": "RPS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62424-1", "protein_name": "Large ribosomal subunit protein eL8", "gene_name": "RPL7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62701-1", "protein_name": "Small ribosomal subunit protein eS4, X isoform", "gene_name": "RPS4X", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63220-1", "protein_name": "Small ribosomal subunit protein eS21", "gene_name": "RPS21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TD47-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 2", "gene_name": "RPS4Y2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96RU7-1", "protein_name": "Tribbles homolog 3", "gene_name": "TRIB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08243-1", "protein_name": "Asparagine synthetase [glutamine-hydrolyzing]", "gene_name": "ASNS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53567-1", "protein_name": "CCAAT/enhancer-binding protein gamma", "gene_name": "CEBPG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18847-1", "protein_name": "Cyclic AMP-dependent transcription factor ATF-3", "gene_name": "ATF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35638-1", "protein_name": "DNA damage-inducible transcript 3 protein", "gene_name": "DDIT3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15336-1", "protein_name": "Cyclic AMP-dependent transcription factor ATF-2", "gene_name": "ATF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18848-1", "protein_name": "Cyclic AMP-dependent transcription factor ATF-4", "gene_name": "ATF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07020-1", "protein_name": "Large ribosomal subunit protein eL18", "gene_name": "RPL18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35268-1", "protein_name": "Large ribosomal subunit protein eL22", "gene_name": "RPL22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83881-1", "protein_name": "Large ribosomal subunit protein eL42", "gene_name": "RPL36A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61353-1", "protein_name": "Large ribosomal subunit protein eL27", "gene_name": "RPL27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNX3-1", "protein_name": "Ribosomal protein uL24-like", "gene_name": "RPL26L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02543-1", "protein_name": "Large ribosomal subunit protein eL20", "gene_name": "RPL18A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40429-1", "protein_name": "Large ribosomal subunit protein uL13", "gene_name": "RPL13A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63173-1", "protein_name": "Large ribosomal subunit protein eL38", "gene_name": "RPL38", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62910-1", "protein_name": "Large ribosomal subunit protein eL32", "gene_name": "RPL32", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39023-1", "protein_name": "Large ribosomal subunit protein uL3", "gene_name": "RPL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18077-1", "protein_name": "Large ribosomal subunit protein eL33", "gene_name": "RPL35A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61254-1", "protein_name": "Large ribosomal subunit protein uL24", "gene_name": "RPL26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84098-1", "protein_name": "Large ribosomal subunit protein eL19", "gene_name": "RPL19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62888-1", "protein_name": "Large ribosomal subunit protein eL30", "gene_name": "RPL30", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83731-1", "protein_name": "Large ribosomal subunit protein eL24", "gene_name": "RPL24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62899-1", "protein_name": "Large ribosomal subunit protein eL31", "gene_name": "RPL31", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62945-1", "protein_name": "Small ribosomal subunit protein eS32", "gene_name": "RPL41", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61927-1", "protein_name": "Large ribosomal subunit protein eL37", "gene_name": "RPL37", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42766-1", "protein_name": "Large ribosomal subunit protein uL29", "gene_name": "RPL35", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05387-1", "protein_name": "Large ribosomal subunit protein P2", "gene_name": "RPLP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92901-1", "protein_name": "Ribosomal protein uL3-like", "gene_name": "RPL3L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46778-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "RPL21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05386-1", "protein_name": "Large ribosomal subunit protein P1", "gene_name": "RPLP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49207-1", "protein_name": "Large ribosomal subunit protein eL34", "gene_name": "RPL34", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62891-1", "protein_name": "Large ribosomal subunit protein eL39", "gene_name": "RPL39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96L21-1", "protein_name": "Ribosomal protein uL16-like", "gene_name": "RPL10L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26373-1", "protein_name": "Large ribosomal subunit protein eL13", "gene_name": "RPL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60866-1", "protein_name": "Small ribosomal subunit protein uS10", "gene_name": "RPS20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969Q0-1", "protein_name": "Ribosomal protein eL42-like", "gene_name": "RPL36AL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61247-1", "protein_name": "Small ribosomal subunit protein eS1", "gene_name": "RPS3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P2X3-1", "protein_name": "Protein IMPACT", "gene_name": "IMPACT", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62854-1", "protein_name": "Small ribosomal subunit protein eS26", "gene_name": "RPS26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62851-1", "protein_name": "Small ribosomal subunit protein eS25", "gene_name": "RPS25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08865-1", "protein_name": "Small ribosomal subunit protein uS2", "gene_name": "RPSA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62847-1", "protein_name": "Small ribosomal subunit protein eS24", "gene_name": "RPS24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62861-1", "protein_name": "Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein", "gene_name": "FAU", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62241-1", "protein_name": "Small ribosomal subunit protein eS8", "gene_name": "RPS8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62277-1", "protein_name": "Small ribosomal subunit protein uS15", "gene_name": "RPS13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39019-1", "protein_name": "Small ribosomal subunit protein eS19", "gene_name": "RPS19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62269-1", "protein_name": "Small ribosomal subunit protein uS13", "gene_name": "RPS18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02878-1", "protein_name": "Large ribosomal subunit protein eL6", "gene_name": "RPL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62273-1", "protein_name": "Small ribosomal subunit protein uS14", "gene_name": "RPS29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17676-1", "protein_name": "CCAAT/enhancer-binding protein beta", "gene_name": "CEBPB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20042-1", "protein_name": "Eukaryotic translation initiation factor 2 subunit 2", "gene_name": "EIF2S2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42677-1", "protein_name": "Small ribosomal subunit protein eS27", "gene_name": "RPS27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EH5-1", "protein_name": "Ribosomal protein eL39-like 2", "gene_name": "RPL39L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62263-1", "protein_name": "Small ribosomal subunit protein uS11", "gene_name": "RPS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61513-1", "protein_name": "Large ribosomal subunit protein eL43", "gene_name": "RPL37A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18124-1", "protein_name": "Large ribosomal subunit protein uL30", "gene_name": "RPL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15880-1", "protein_name": "Small ribosomal subunit protein uS5", "gene_name": "RPS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62750-1", "protein_name": "Large ribosomal subunit protein uL23", "gene_name": "RPL23A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62280-1", "protein_name": "Small ribosomal subunit protein uS17", "gene_name": "RPS11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62249-1", "protein_name": "Small ribosomal subunit protein uS9", "gene_name": "RPS16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50914-1", "protein_name": "Large ribosomal subunit protein eL14", "gene_name": "RPL14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62906-1", "protein_name": "Large ribosomal subunit protein uL1", "gene_name": "RPL10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23396-1", "protein_name": "Small ribosomal subunit protein uS3", "gene_name": "RPS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05198-1", "protein_name": "Eukaryotic translation initiation factor 2 subunit 1", "gene_name": "EIF2S1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62841-1", "protein_name": "Small ribosomal subunit protein uS19", "gene_name": "RPS15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92616-1", "protein_name": "Stalled ribosome sensor GCN1", "gene_name": "GCN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "C0HME6-1", "protein_name": "RPL36 alternative reading frame protein", "gene_name": "RPL36", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62829-1", "protein_name": "Large ribosomal subunit protein uL14", "gene_name": "RPL23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32969-1", "protein_name": "Large ribosomal subunit protein uL6", "gene_name": "RPL9P7; RPL9P8; RPL9P9; RPL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30050-1", "protein_name": "Large ribosomal subunit protein uL11", "gene_name": "RPL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62266-1", "protein_name": "Small ribosomal subunit protein uS12", "gene_name": "RPS23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46777-1", "protein_name": "Large ribosomal subunit protein uL18", "gene_name": "RPL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P2K8-1", "protein_name": "eIF-2-alpha kinase GCN2", "gene_name": "EIF2AK4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41091-1", "protein_name": "Eukaryotic translation initiation factor 2 subunit 3", "gene_name": "EIF2S3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62753-1", "protein_name": "Small ribosomal subunit protein eS6", "gene_name": "RPS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27635-1", "protein_name": "Large ribosomal subunit protein uL16", "gene_name": "RPL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62913-1", "protein_name": "Large ribosomal subunit protein uL5", "gene_name": "RPL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36578-1", "protein_name": "Large ribosomal subunit protein uL4", "gene_name": "RPL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05388-1", "protein_name": "Large ribosomal subunit protein uL10", "gene_name": "RPLP0", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46779-1", "protein_name": "Large ribosomal subunit protein eL28", "gene_name": "RPL28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62857-1", "protein_name": "Small ribosomal subunit protein eS28", "gene_name": "RPS28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61313-1", "protein_name": "Large ribosomal subunit protein eL15", "gene_name": "RPL15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62081-1", "protein_name": "Small ribosomal subunit protein eS7", "gene_name": "RPS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71UM5-1", "protein_name": "Ribosomal protein eS27-like", "gene_name": "RPS27L", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P18621", "url": "https://www.uniprot.org/uniprotkb/P18621" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.8336711", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 102 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "GTP binding to elongation factor eEF-2 unmasks a tryptophan residue required for biological activity.", "journal": "The Journal of biological chemistry", "date": "1993", "authors": "Guillot D, Penin F, Di Pietro A, Sontag B, Lavergne JP, Reboud JP", "reference": { "type": "PubMed", "id": "8407925", "url": "https://pubmed.ncbi.nlm.nih.gov/8407925" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P18621-1", "protein_name": "Large ribosomal subunit protein uL22", "gene_name": "RPL17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46776-1", "protein_name": "Large ribosomal subunit protein uL15", "gene_name": "RPL27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46782-1", "protein_name": "Small ribosomal subunit protein uS7", "gene_name": "RPS5", "tax_name": "Human" 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"protein_name": "Large ribosomal subunit protein uL13", "gene_name": "RPL13A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63173-1", "protein_name": "Large ribosomal subunit protein eL38", "gene_name": "RPL38", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62910-1", "protein_name": "Large ribosomal subunit protein eL32", "gene_name": "RPL32", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39023-1", "protein_name": "Large ribosomal subunit protein uL3", "gene_name": "RPL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18077-1", "protein_name": "Large ribosomal subunit protein eL33", "gene_name": "RPL35A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61254-1", "protein_name": "Large ribosomal subunit protein uL24", "gene_name": "RPL26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84098-1", "protein_name": "Large ribosomal subunit protein eL19", "gene_name": "RPL19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62888-1", "protein_name": "Large 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"Human" }, { "uniprot_canonical_ac": "Q96T21-1", "protein_name": "Selenocysteine insertion sequence-binding protein 2", "gene_name": "SECISBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969Q0-1", "protein_name": "Ribosomal protein eL42-like", "gene_name": "RPL36AL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61247-1", "protein_name": "Small ribosomal subunit protein eS1", "gene_name": "RPS3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62854-1", "protein_name": "Small ribosomal subunit protein eS26", "gene_name": "RPS26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62851-1", "protein_name": "Small ribosomal subunit protein eS25", "gene_name": "RPS25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08865-1", "protein_name": "Small ribosomal subunit protein uS2", "gene_name": "RPSA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62847-1", "protein_name": "Small ribosomal subunit protein eS24", "gene_name": "RPS24", "tax_name": "Human" }, { 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"uniprot_canonical_ac": "Q9HD40-1", "protein_name": "O-phosphoseryl-tRNA(Sec) selenium transferase", "gene_name": "SEPSECS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42677-1", "protein_name": "Small ribosomal subunit protein eS27", "gene_name": "RPS27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EH5-1", "protein_name": "Ribosomal protein eL39-like 2", "gene_name": "RPL39L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62263-1", "protein_name": "Small ribosomal subunit protein uS11", "gene_name": "RPS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61513-1", "protein_name": "Large ribosomal subunit protein eL43", "gene_name": "RPL37A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18124-1", "protein_name": "Large ribosomal subunit protein uL30", "gene_name": "RPL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15880-1", "protein_name": "Small ribosomal subunit protein uS5", "gene_name": "RPS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62750-1", "protein_name": "Large ribosomal subunit protein uL23", "gene_name": "RPL23A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62280-1", "protein_name": "Small ribosomal subunit protein uS17", "gene_name": "RPS11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62249-1", "protein_name": "Small ribosomal subunit protein uS9", "gene_name": "RPS16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50914-1", "protein_name": "Large ribosomal subunit protein eL14", "gene_name": "RPL14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62906-1", "protein_name": "Large ribosomal subunit protein uL1", "gene_name": "RPL10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23396-1", "protein_name": "Small ribosomal subunit protein uS3", "gene_name": "RPS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62841-1", "protein_name": "Small ribosomal subunit protein uS19", "gene_name": "RPS15", "tax_name": "Human" }, { "uniprot_canonical_ac": "C0HME6-1", "protein_name": "RPL36 alternative reading frame protein", "gene_name": "RPL36", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62829-1", "protein_name": "Large ribosomal subunit protein uL14", "gene_name": "RPL23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32969-1", "protein_name": "Large ribosomal subunit protein uL6", "gene_name": "RPL9P7; RPL9P8; RPL9P9; RPL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30050-1", "protein_name": "Large ribosomal subunit protein uL11", "gene_name": "RPL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62266-1", "protein_name": "Small ribosomal subunit protein uS12", "gene_name": "RPS23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46777-1", "protein_name": "Large ribosomal subunit protein uL18", "gene_name": "RPL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62753-1", "protein_name": "Small ribosomal subunit protein eS6", "gene_name": "RPS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99611-1", "protein_name": "Selenide, water dikinase 2", "gene_name": "SEPHS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IV42-1", "protein_name": "L-seryl-tRNA(Sec) kinase", "gene_name": "PSTK", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27635-1", "protein_name": "Large ribosomal subunit protein uL16", "gene_name": "RPL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62913-1", "protein_name": "Large ribosomal subunit protein uL5", "gene_name": "RPL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36578-1", "protein_name": "Large ribosomal subunit protein uL4", "gene_name": "RPL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05388-1", "protein_name": "Large ribosomal subunit protein uL10", "gene_name": "RPLP0", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46779-1", "protein_name": "Large ribosomal subunit protein eL28", "gene_name": "RPL28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62857-1", "protein_name": "Small ribosomal subunit protein eS28", "gene_name": "RPS28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61313-1", "protein_name": "Large ribosomal subunit protein eL15", "gene_name": "RPL15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62081-1", "protein_name": "Small ribosomal subunit protein eS7", "gene_name": "RPS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71UM5-1", "protein_name": "Ribosomal protein eS27-like", "gene_name": "RPS27L", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P18621", "url": "https://www.uniprot.org/uniprotkb/P18621" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.8890909", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 94 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } 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"date": "1997", "authors": "Bruhat A, Jousse C, Wang XZ, Ron D, Ferrara M, Fafournoux P", "reference": { "type": "PubMed", "id": "9211906", "url": "https://pubmed.ncbi.nlm.nih.gov/9211906" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P18621-1", "protein_name": "Large ribosomal subunit protein uL22", "gene_name": "RPL17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46776-1", "protein_name": "Large ribosomal subunit protein uL15", "gene_name": "RPL27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46782-1", "protein_name": "Small ribosomal subunit protein uS7", "gene_name": "RPS5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47914-1", "protein_name": "Large ribosomal subunit protein eL29", "gene_name": "RPL29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62244-1", "protein_name": "Small ribosomal subunit protein uS8", "gene_name": "RPS15A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22090-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 1", "gene_name": "RPS4Y1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P5R6-1", "protein_name": "Ribosomal protein eL22-like", "gene_name": "RPL22L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08708-1", "protein_name": "Small ribosomal subunit protein eS17", "gene_name": "RPS17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46783-1", "protein_name": "Small ribosomal subunit protein eS10", "gene_name": "RPS10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62917-1", "protein_name": "Large ribosomal subunit protein uL2", "gene_name": "RPL8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25398-1", "protein_name": "Small ribosomal subunit protein eS12", "gene_name": "RPS12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46781-1", "protein_name": "Small ribosomal subunit protein uS4", "gene_name": "RPS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62424-1", "protein_name": "Large ribosomal subunit protein eL8", "gene_name": "RPL7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62701-1", "protein_name": "Small ribosomal subunit protein eS4, X isoform", "gene_name": "RPS4X", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63220-1", "protein_name": "Small ribosomal subunit protein eS21", "gene_name": "RPS21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TD47-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 2", "gene_name": "RPS4Y2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96RU7-1", "protein_name": "Tribbles homolog 3", "gene_name": "TRIB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08243-1", "protein_name": "Asparagine synthetase [glutamine-hydrolyzing]", "gene_name": "ASNS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53567-1", "protein_name": "CCAAT/enhancer-binding protein gamma", "gene_name": "CEBPG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18847-1", "protein_name": "Cyclic AMP-dependent transcription factor ATF-3", "gene_name": "ATF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35638-1", "protein_name": "DNA damage-inducible transcript 3 protein", "gene_name": "DDIT3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15336-1", "protein_name": "Cyclic AMP-dependent transcription factor ATF-2", "gene_name": "ATF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18848-1", "protein_name": "Cyclic AMP-dependent transcription factor ATF-4", "gene_name": "ATF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07020-1", "protein_name": "Large ribosomal subunit protein eL18", "gene_name": "RPL18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35268-1", "protein_name": "Large ribosomal subunit protein eL22", "gene_name": "RPL22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83881-1", "protein_name": "Large ribosomal subunit protein eL42", "gene_name": "RPL36A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61353-1", "protein_name": "Large ribosomal subunit protein eL27", "gene_name": "RPL27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNX3-1", "protein_name": "Ribosomal protein uL24-like", "gene_name": "RPL26L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02543-1", "protein_name": "Large ribosomal subunit protein eL20", "gene_name": "RPL18A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40429-1", "protein_name": "Large ribosomal subunit protein uL13", "gene_name": "RPL13A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63173-1", "protein_name": "Large ribosomal subunit protein eL38", "gene_name": "RPL38", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62910-1", "protein_name": "Large ribosomal subunit protein eL32", "gene_name": "RPL32", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39023-1", "protein_name": "Large ribosomal subunit protein uL3", "gene_name": "RPL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18077-1", "protein_name": "Large ribosomal subunit protein eL33", "gene_name": "RPL35A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61254-1", "protein_name": "Large ribosomal subunit protein uL24", "gene_name": "RPL26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84098-1", "protein_name": "Large ribosomal subunit protein eL19", "gene_name": "RPL19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62888-1", "protein_name": "Large ribosomal subunit protein eL30", "gene_name": "RPL30", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83731-1", "protein_name": "Large ribosomal subunit protein eL24", "gene_name": "RPL24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62899-1", "protein_name": "Large ribosomal subunit protein eL31", "gene_name": "RPL31", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62945-1", "protein_name": "Small ribosomal subunit protein eS32", "gene_name": "RPL41", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61927-1", "protein_name": "Large ribosomal subunit protein eL37", "gene_name": "RPL37", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42766-1", "protein_name": "Large ribosomal subunit protein uL29", "gene_name": "RPL35", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05387-1", "protein_name": "Large ribosomal subunit protein P2", "gene_name": "RPLP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92901-1", "protein_name": "Ribosomal protein uL3-like", "gene_name": "RPL3L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46778-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "RPL21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05386-1", "protein_name": "Large ribosomal subunit protein P1", "gene_name": "RPLP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49207-1", "protein_name": "Large ribosomal subunit protein eL34", "gene_name": "RPL34", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62891-1", "protein_name": "Large ribosomal subunit protein eL39", "gene_name": "RPL39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96L21-1", "protein_name": "Ribosomal protein uL16-like", "gene_name": "RPL10L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26373-1", "protein_name": "Large ribosomal subunit protein eL13", "gene_name": "RPL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60866-1", "protein_name": "Small ribosomal subunit protein uS10", "gene_name": "RPS20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969Q0-1", "protein_name": "Ribosomal protein eL42-like", "gene_name": "RPL36AL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61247-1", "protein_name": "Small ribosomal subunit protein eS1", "gene_name": "RPS3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P2X3-1", "protein_name": "Protein IMPACT", "gene_name": "IMPACT", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62854-1", "protein_name": "Small ribosomal subunit protein eS26", "gene_name": "RPS26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62851-1", "protein_name": "Small ribosomal subunit protein eS25", "gene_name": "RPS25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08865-1", "protein_name": "Small ribosomal subunit protein uS2", "gene_name": "RPSA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62847-1", "protein_name": "Small ribosomal subunit protein eS24", "gene_name": "RPS24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62861-1", "protein_name": "Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein", "gene_name": "FAU", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62241-1", "protein_name": "Small ribosomal subunit protein eS8", "gene_name": "RPS8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62277-1", "protein_name": "Small ribosomal subunit protein uS15", "gene_name": "RPS13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39019-1", "protein_name": "Small ribosomal subunit protein eS19", "gene_name": "RPS19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62269-1", "protein_name": "Small ribosomal subunit protein uS13", "gene_name": "RPS18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02878-1", "protein_name": "Large ribosomal subunit protein eL6", "gene_name": "RPL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62273-1", "protein_name": "Small ribosomal subunit protein uS14", "gene_name": "RPS29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17676-1", "protein_name": "CCAAT/enhancer-binding protein beta", "gene_name": "CEBPB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20042-1", "protein_name": "Eukaryotic translation initiation factor 2 subunit 2", "gene_name": "EIF2S2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42677-1", "protein_name": "Small ribosomal subunit protein eS27", "gene_name": "RPS27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EH5-1", "protein_name": "Ribosomal protein eL39-like 2", "gene_name": "RPL39L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62263-1", "protein_name": "Small ribosomal subunit protein uS11", "gene_name": "RPS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61513-1", "protein_name": "Large ribosomal subunit protein eL43", "gene_name": "RPL37A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18124-1", "protein_name": "Large ribosomal subunit protein uL30", "gene_name": "RPL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15880-1", "protein_name": "Small ribosomal subunit protein uS5", "gene_name": "RPS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62750-1", "protein_name": "Large ribosomal subunit protein uL23", "gene_name": "RPL23A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62280-1", "protein_name": "Small ribosomal subunit protein uS17", "gene_name": "RPS11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62249-1", "protein_name": "Small ribosomal subunit protein uS9", "gene_name": "RPS16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50914-1", "protein_name": "Large ribosomal subunit protein eL14", "gene_name": "RPL14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62906-1", "protein_name": "Large ribosomal subunit protein uL1", "gene_name": "RPL10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23396-1", "protein_name": "Small ribosomal subunit protein uS3", "gene_name": "RPS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05198-1", "protein_name": "Eukaryotic translation initiation factor 2 subunit 1", "gene_name": "EIF2S1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62841-1", "protein_name": "Small ribosomal subunit protein uS19", "gene_name": "RPS15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92616-1", "protein_name": "Stalled ribosome sensor GCN1", "gene_name": "GCN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "C0HME6-1", "protein_name": "RPL36 alternative reading frame protein", "gene_name": "RPL36", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62829-1", "protein_name": "Large ribosomal subunit protein uL14", "gene_name": "RPL23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32969-1", "protein_name": "Large ribosomal subunit protein uL6", "gene_name": "RPL9P7; RPL9P8; RPL9P9; RPL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30050-1", "protein_name": "Large ribosomal subunit protein uL11", "gene_name": "RPL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62266-1", "protein_name": "Small ribosomal subunit protein uS12", "gene_name": "RPS23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46777-1", "protein_name": "Large ribosomal subunit protein uL18", "gene_name": "RPL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P2K8-1", "protein_name": "eIF-2-alpha kinase GCN2", "gene_name": "EIF2AK4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41091-1", "protein_name": "Eukaryotic translation initiation factor 2 subunit 3", "gene_name": "EIF2S3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62753-1", "protein_name": "Small ribosomal subunit protein eS6", "gene_name": "RPS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27635-1", "protein_name": "Large ribosomal subunit protein uL16", "gene_name": "RPL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62913-1", "protein_name": "Large ribosomal subunit protein uL5", "gene_name": "RPL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36578-1", "protein_name": "Large ribosomal subunit protein uL4", "gene_name": "RPL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05388-1", "protein_name": "Large ribosomal subunit protein uL10", "gene_name": "RPLP0", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46779-1", "protein_name": "Large ribosomal subunit protein eL28", "gene_name": "RPL28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62857-1", "protein_name": "Small ribosomal subunit protein eS28", "gene_name": "RPS28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61313-1", "protein_name": "Large ribosomal subunit protein eL15", "gene_name": "RPL15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62081-1", "protein_name": "Small ribosomal subunit protein eS7", "gene_name": "RPS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71UM5-1", "protein_name": "Ribosomal protein eS27-like", "gene_name": "RPS27L", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P18621", "url": "https://www.uniprot.org/uniprotkb/P18621" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.9211906", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 102 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Genomic organization, cDNA sequence, bacterial expression, and purification of human seryl-tRNA synthase.", "journal": "European journal of biochemistry", "date": "1997", "authors": "Vincent C, Tarbouriech N, Hartlein M", "reference": { "type": "PubMed", "id": "9431993", "url": "https://pubmed.ncbi.nlm.nih.gov/9431993" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P18621-1", "protein_name": "Large ribosomal subunit protein uL22", "gene_name": "RPL17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46776-1", "protein_name": "Large ribosomal subunit protein uL15", "gene_name": "RPL27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46782-1", "protein_name": "Small ribosomal subunit protein uS7", "gene_name": "RPS5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57772-1", "protein_name": "Selenocysteine-specific elongation factor", "gene_name": "EEFSEC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47914-1", "protein_name": "Large ribosomal subunit protein eL29", "gene_name": "RPL29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62244-1", "protein_name": "Small ribosomal subunit protein uS8", "gene_name": "RPS15A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22090-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 1", "gene_name": "RPS4Y1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P5R6-1", "protein_name": "Ribosomal protein eL22-like", "gene_name": "RPL22L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08708-1", "protein_name": "Small ribosomal subunit protein eS17", "gene_name": "RPS17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46783-1", "protein_name": "Small ribosomal subunit protein eS10", "gene_name": "RPS10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62917-1", "protein_name": "Large ribosomal subunit protein uL2", "gene_name": "RPL8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25398-1", "protein_name": "Small ribosomal subunit protein eS12", "gene_name": "RPS12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46781-1", "protein_name": "Small ribosomal subunit protein uS4", "gene_name": "RPS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62424-1", "protein_name": "Large ribosomal subunit protein eL8", "gene_name": "RPL7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62701-1", "protein_name": "Small ribosomal subunit protein eS4, X isoform", "gene_name": "RPS4X", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63220-1", "protein_name": "Small ribosomal subunit protein eS21", "gene_name": "RPS21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TD47-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 2", "gene_name": "RPS4Y2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P56192-1", "protein_name": "Methionine--tRNA ligase, cytoplasmic", "gene_name": "MARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12081-1", "protein_name": "Histidine--tRNA ligase, cytoplasmic", "gene_name": "HARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P54136-1", "protein_name": "Arginine--tRNA ligase, cytoplasmic", "gene_name": "RARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49591-1", "protein_name": "Serine--tRNA ligase, cytoplasmic", "gene_name": "SARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07020-1", "protein_name": "Large ribosomal subunit protein eL18", "gene_name": "RPL18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35268-1", "protein_name": "Large ribosomal subunit protein eL22", "gene_name": "RPL22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83881-1", "protein_name": "Large ribosomal subunit protein eL42", "gene_name": "RPL36A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61353-1", "protein_name": "Large ribosomal subunit protein eL27", "gene_name": "RPL27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNX3-1", "protein_name": "Ribosomal protein uL24-like", "gene_name": "RPL26L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02543-1", "protein_name": "Large ribosomal subunit protein eL20", "gene_name": "RPL18A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40429-1", "protein_name": "Large ribosomal subunit protein uL13", "gene_name": "RPL13A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63173-1", "protein_name": "Large ribosomal subunit protein eL38", "gene_name": "RPL38", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62910-1", "protein_name": "Large ribosomal subunit protein eL32", "gene_name": "RPL32", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39023-1", "protein_name": "Large ribosomal subunit protein uL3", "gene_name": "RPL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18077-1", "protein_name": "Large ribosomal subunit protein eL33", "gene_name": "RPL35A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61254-1", "protein_name": "Large ribosomal subunit protein uL24", "gene_name": "RPL26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84098-1", "protein_name": "Large ribosomal subunit protein eL19", "gene_name": "RPL19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62888-1", "protein_name": "Large ribosomal subunit protein eL30", "gene_name": "RPL30", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83731-1", "protein_name": "Large ribosomal subunit protein eL24", "gene_name": "RPL24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62899-1", "protein_name": "Large ribosomal subunit protein eL31", "gene_name": "RPL31", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62945-1", "protein_name": "Small ribosomal subunit protein eS32", "gene_name": "RPL41", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61927-1", "protein_name": "Large ribosomal subunit protein eL37", "gene_name": "RPL37", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42766-1", "protein_name": "Large ribosomal subunit protein uL29", "gene_name": "RPL35", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05387-1", "protein_name": "Large ribosomal subunit protein P2", "gene_name": "RPLP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92901-1", "protein_name": "Ribosomal protein uL3-like", "gene_name": "RPL3L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46778-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "RPL21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05386-1", "protein_name": "Large ribosomal subunit protein P1", "gene_name": "RPLP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49207-1", "protein_name": "Large ribosomal subunit protein eL34", "gene_name": "RPL34", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62891-1", "protein_name": "Large ribosomal subunit protein eL39", "gene_name": "RPL39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96L21-1", "protein_name": "Ribosomal protein uL16-like", "gene_name": "RPL10L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26373-1", "protein_name": "Large ribosomal subunit protein eL13", "gene_name": "RPL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41250-1", "protein_name": "Glycine--tRNA ligase", "gene_name": "GARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60866-1", "protein_name": "Small ribosomal subunit protein uS10", "gene_name": "RPS20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96T21-1", "protein_name": "Selenocysteine insertion sequence-binding protein 2", "gene_name": "SECISBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969Q0-1", "protein_name": "Ribosomal protein eL42-like", "gene_name": "RPL36AL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61247-1", "protein_name": "Small ribosomal subunit protein eS1", "gene_name": "RPS3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62854-1", "protein_name": "Small ribosomal subunit protein eS26", "gene_name": "RPS26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62851-1", "protein_name": "Small ribosomal subunit protein eS25", "gene_name": "RPS25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08865-1", "protein_name": "Small ribosomal subunit protein uS2", "gene_name": "RPSA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62847-1", "protein_name": "Small ribosomal subunit protein eS24", "gene_name": "RPS24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62861-1", "protein_name": "Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein", "gene_name": "FAU", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62241-1", "protein_name": "Small ribosomal subunit protein eS8", "gene_name": "RPS8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P54577-1", "protein_name": "Tyrosine--tRNA ligase, cytoplasmic", "gene_name": "YARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62277-1", "protein_name": "Small ribosomal subunit protein uS15", "gene_name": "RPS13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39019-1", "protein_name": "Small ribosomal subunit protein eS19", "gene_name": "RPS19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P2J5-1", "protein_name": "Leucine--tRNA ligase, cytoplasmic", "gene_name": "LARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62269-1", "protein_name": "Small ribosomal subunit protein uS13", "gene_name": "RPS18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41252-1", "protein_name": "Isoleucine--tRNA ligase, cytoplasmic", "gene_name": "IARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49588-1", "protein_name": "Alanine--tRNA ligase, cytoplasmic", "gene_name": "AARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02878-1", "protein_name": "Large ribosomal subunit protein eL6", "gene_name": "RPL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62273-1", "protein_name": "Small ribosomal subunit protein uS14", "gene_name": "RPS29", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HD40-1", "protein_name": "O-phosphoseryl-tRNA(Sec) selenium transferase", "gene_name": "SEPSECS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42677-1", "protein_name": "Small ribosomal subunit protein eS27", "gene_name": "RPS27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EH5-1", "protein_name": "Ribosomal protein eL39-like 2", "gene_name": "RPL39L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62263-1", "protein_name": "Small ribosomal subunit protein uS11", "gene_name": "RPS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61513-1", "protein_name": "Large ribosomal subunit protein eL43", "gene_name": "RPL37A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18124-1", "protein_name": "Large ribosomal subunit protein uL30", "gene_name": "RPL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15181-1", "protein_name": "Inorganic pyrophosphatase", "gene_name": "PPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15880-1", "protein_name": "Small ribosomal subunit protein uS5", "gene_name": "RPS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62750-1", "protein_name": "Large ribosomal subunit protein uL23", "gene_name": "RPL23A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62280-1", "protein_name": "Small ribosomal subunit protein uS17", "gene_name": "RPS11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62249-1", "protein_name": "Small ribosomal subunit protein uS9", "gene_name": "RPS16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50914-1", "protein_name": "Large ribosomal subunit protein eL14", "gene_name": "RPL14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62906-1", "protein_name": "Large ribosomal subunit protein uL1", "gene_name": "RPL10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12904-1", "protein_name": "Aminoacyl tRNA synthase complex-interacting multifunctional protein 1", "gene_name": "AIMP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13155-1", "protein_name": "Aminoacyl tRNA synthase complex-interacting multifunctional protein 2", "gene_name": "AIMP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23396-1", "protein_name": "Small ribosomal subunit protein uS3", "gene_name": "RPS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y285-1", "protein_name": "Phenylalanine--tRNA ligase alpha subunit", "gene_name": "FARSA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47897-1", "protein_name": "Glutamine--tRNA ligase", "gene_name": "QARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14868-1", "protein_name": "Aspartate--tRNA ligase, cytoplasmic", "gene_name": "DARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15046-1", "protein_name": "Lysine--tRNA ligase", "gene_name": "KARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62841-1", "protein_name": "Small ribosomal subunit protein uS19", "gene_name": "RPS15", "tax_name": "Human" }, { "uniprot_canonical_ac": "C0HME6-1", "protein_name": "RPL36 alternative reading frame protein", "gene_name": "RPL36", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62829-1", "protein_name": "Large ribosomal subunit protein uL14", "gene_name": "RPL23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23381-1", "protein_name": "Tryptophan--tRNA ligase, cytoplasmic", "gene_name": "WARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43324-1", "protein_name": "Eukaryotic translation elongation factor 1 epsilon-1", "gene_name": "EEF1E1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26640-1", "protein_name": "Valine--tRNA ligase", "gene_name": "VARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32969-1", "protein_name": "Large ribosomal subunit protein uL6", "gene_name": "RPL9P7; RPL9P8; RPL9P9; RPL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30050-1", "protein_name": "Large ribosomal subunit protein uL11", "gene_name": "RPL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62266-1", "protein_name": "Small ribosomal subunit protein uS12", "gene_name": "RPS23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46777-1", "protein_name": "Large ribosomal subunit protein uL18", "gene_name": "RPL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62753-1", "protein_name": "Small ribosomal subunit protein eS6", "gene_name": "RPS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99611-1", "protein_name": "Selenide, water dikinase 2", "gene_name": "SEPHS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IV42-1", "protein_name": "L-seryl-tRNA(Sec) kinase", "gene_name": "PSTK", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27635-1", "protein_name": "Large ribosomal subunit protein uL16", "gene_name": "RPL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07814-1", "protein_name": "Bifunctional glutamate/proline--tRNA ligase", "gene_name": "EPRS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62913-1", "protein_name": "Large ribosomal subunit protein uL5", "gene_name": "RPL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36578-1", "protein_name": "Large ribosomal subunit protein uL4", "gene_name": "RPL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43776-1", "protein_name": "Asparagine--tRNA ligase, cytoplasmic", "gene_name": "NARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49589-1", "protein_name": "Cysteine--tRNA ligase, cytoplasmic", "gene_name": "CARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NSD9-1", "protein_name": "Phenylalanine--tRNA ligase beta subunit", "gene_name": "FARSB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05388-1", "protein_name": "Large ribosomal subunit protein uL10", "gene_name": "RPLP0", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46779-1", "protein_name": "Large ribosomal subunit protein eL28", "gene_name": "RPL28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62857-1", "protein_name": "Small ribosomal subunit protein eS28", "gene_name": "RPS28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26639-1", "protein_name": "Threonine--tRNA ligase 1, cytoplasmic", "gene_name": "TARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61313-1", "protein_name": "Large ribosomal subunit protein eL15", "gene_name": "RPL15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62081-1", "protein_name": "Small ribosomal subunit protein eS7", "gene_name": "RPS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71UM5-1", "protein_name": "Ribosomal protein eS27-like", "gene_name": "RPS27L", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P18621", "url": "https://www.uniprot.org/uniprotkb/P18621" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.9431993", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 117 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A map of 75 human ribosomal protein genes.", "journal": "Genome Res.", "date": "1998", "authors": "Kenmochi N, Kawaguchi T, Rozen S, Davis E, Goodman N, Hudson TJ, Tanaka T, Page DC", "reference": { "type": "PubMed", "id": "9582194", "url": "https://pubmed.ncbi.nlm.nih.gov/9582194" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P18621-1", "protein_name": "Large ribosomal subunit protein uL22", "gene_name": "RPL17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46776-1", "protein_name": "Large ribosomal subunit protein uL15", "gene_name": "RPL27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46782-1", "protein_name": "Small ribosomal subunit protein uS7", "gene_name": "RPS5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62244-1", "protein_name": "Small ribosomal subunit protein uS8", "gene_name": "RPS15A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46783-1", "protein_name": "Small ribosomal subunit protein eS10", "gene_name": "RPS10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62917-1", "protein_name": "Large ribosomal subunit protein uL2", "gene_name": "RPL8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25398-1", "protein_name": "Small ribosomal subunit protein eS12", "gene_name": "RPS12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46781-1", "protein_name": "Small ribosomal subunit protein uS4", "gene_name": "RPS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63220-1", "protein_name": "Small ribosomal subunit protein eS21", "gene_name": "RPS21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63173-1", "protein_name": "Large ribosomal subunit protein eL38", "gene_name": "RPL38", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39023-1", "protein_name": "Large ribosomal subunit protein uL3", "gene_name": "RPL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83731-1", "protein_name": "Large ribosomal subunit protein eL24", "gene_name": "RPL24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61927-1", "protein_name": "Large ribosomal subunit protein eL37", "gene_name": "RPL37", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46778-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "RPL21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49207-1", "protein_name": "Large ribosomal subunit protein eL34", "gene_name": "RPL34", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60866-1", "protein_name": "Small ribosomal subunit protein uS10", "gene_name": "RPS20", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61247-1", "protein_name": "Small ribosomal subunit protein eS1", "gene_name": "RPS3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08865-1", "protein_name": "Small ribosomal subunit protein uS2", "gene_name": "RPSA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39019-1", "protein_name": "Small ribosomal subunit protein eS19", "gene_name": "RPS19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62273-1", "protein_name": "Small ribosomal subunit protein uS14", "gene_name": "RPS29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42677-1", "protein_name": "Small ribosomal subunit protein eS27", "gene_name": "RPS27", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62280-1", "protein_name": "Small ribosomal subunit protein uS17", "gene_name": "RPS11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32969-1", "protein_name": "Large ribosomal subunit protein uL6", "gene_name": "RPL9P7; RPL9P8; RPL9P9; RPL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62266-1", "protein_name": "Small ribosomal subunit protein uS12", "gene_name": "RPS23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27635-1", "protein_name": "Large ribosomal subunit protein uL16", "gene_name": "RPL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62913-1", "protein_name": "Large ribosomal subunit protein uL5", "gene_name": "RPL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05388-1", "protein_name": "Large ribosomal subunit protein uL10", "gene_name": "RPLP0", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62857-1", "protein_name": "Small ribosomal subunit protein eS28", "gene_name": "RPS28", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P18621", "url": "https://www.uniprot.org/uniprotkb/P18621" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.9582194", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 29 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] } ]