[ { "title": "HOXC6/8/10/13 predict poor prognosis and associate with immune infiltrations in glioblastoma.", "journal": "International immunopharmacology", "date": "2021", "authors": "Yu M, Yu S, Zhou W, Yi B, Liu Y", "reference": { "type": "PubMed", "id": "34763232", "url": "https://pubmed.ncbi.nlm.nih.gov/34763232" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P31276-1", "protein_name": "Homeobox protein Hox-C13", "gene_name": "HOXC13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31273-1", "protein_name": "Homeobox protein Hox-C8", "gene_name": "HOXC8", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P31276", "url": "https://www.uniprot.org/uniprotkb/P31276" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.34763232", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "LncRNA HOXC-AS5 Affects the Proliferation, Invasion and Cell Cycle of Ameloblastoma Cells by Acting on the Target Gene HOXC13.", "journal": "Cellular and molecular biology (Noisy-le-Grand, France)", "date": "2022", "authors": "Li J, Zhang B, Wang B, Zhang X", "reference": { "type": "PubMed", "id": "36029503", "url": "https://pubmed.ncbi.nlm.nih.gov/36029503" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P31276-1", "protein_name": "Homeobox protein Hox-C13", "gene_name": "HOXC13", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P31276", "url": "https://www.uniprot.org/uniprotkb/P31276" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.36029503", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Variants Identified in the HOXC13 and HOXD13 Genes Suggest Association with Cervical Cancer in a Cohort of Mexican Women.", "journal": "Genes", "date": "2023-01-30", "authors": "Ju\u00e1rez-Rend\u00f3n Karina Janett, Castro-Garc\u00eda Manuel Alejandro, Prada-Ortega Diddier Giovanni, Rivera Gildardo, Ru\u00edz-Godoy Luz Mar\u00eda, Enr\u00edquez-C\u00e1rcamo Virginia Isabel, Reyes-Lopez Miguel Angel", "reference": { "type": "PubMed", "id": "36833285", "url": "https://pubmed.ncbi.nlm.nih.gov/36833285" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P31276-1", "protein_name": "Homeobox protein Hox-C13", "gene_name": "HOXC13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35453-1", "protein_name": "Homeobox protein Hox-D13", "gene_name": "HOXD13", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P31276", "url": "https://www.uniprot.org/uniprotkb/P31276" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.36833285", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Silencing HOXC13 exerts anti-prostate cancer effects by inducing DNA damage and activating cGAS/STING/IRF3 pathway.", "journal": "Journal of translational medicine", "date": "2023-12-06", "authors": "Li Maozhang, Bai Guangwei, Cen Yi, Xie Qitong, Chen Jiahong, Chen Jia, Chen Qingbiao, Zhong Weide, Zhou Xiaobo", "reference": { "type": "PubMed", "id": "38057852", "url": "https://pubmed.ncbi.nlm.nih.gov/38057852" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P31276-1", "protein_name": "Homeobox protein Hox-C13", "gene_name": "HOXC13", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P31276", "url": "https://www.uniprot.org/uniprotkb/P31276" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.38057852", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A novel EF-hand protein, CRACR2A, is a cytosolic Ca2+ sensor that stabilizes CRAC channels in T cells.", "journal": "Nature cell biology", "date": "2010", "authors": "Srikanth S, Jung HJ, Kim KD, Souda P, Whitelegge J, Gwack Y", "reference": { "type": "PubMed", "id": "20418871", "url": "https://pubmed.ncbi.nlm.nih.gov/20418871" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8N4Y2-1", "protein_name": "EF-hand calcium-binding domain-containing protein 4A", "gene_name": "CRACR2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BSW2-2", "protein_name": "EF-hand calcium-binding domain-containing protein 4B", "gene_name": "CRACR2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96SN7-1", "protein_name": "Protein orai-2", "gene_name": "ORAI2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13586-1", "protein_name": "Stromal interaction molecule 1", "gene_name": "STIM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRQ5-1", "protein_name": "Protein orai-3", "gene_name": "ORAI3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96D31-1", "protein_name": "Calcium release-activated calcium channel protein 1", "gene_name": "ORAI1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q8N4Y2", "url": "https://www.uniprot.org/uniprotkb/Q8N4Y2" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 97, "end_pos": 99, "sequence_org": "DAD", "sequence_mut": "AAA", "comment": "In EF2MUT; enhanced STIM1 clustering and elevated cytoplasmic Ca2+, thereby causing cell death in T-cells. Loss of calcium-binding. Can rescue JNK phosphorylation when expressed in CRACR2A-depleted T-cells. No effect on its localization to the Golgi membrane.", "evidence": [ { "database": "UniProtKB", "id": "Q9BSW2", "url": "https://www.uniprot.org/uniprotkb/Q9BSW2" }, { "database": "PubMed", "id": "20418871", "url": "https://pubmed.ncbi.nlm.nih.gov/20418871" }, { "database": "PubMed", "id": "31092558", "url": "https://pubmed.ncbi.nlm.nih.gov/31092558" }, { "database": "PubMed", "id": "27016526", "url": "https://pubmed.ncbi.nlm.nih.gov/27016526" } ], "uniprot_canonical_ac": "Q9BSW2-2" }, { "start_pos": 85, "end_pos": 87, "sequence_org": "KLK", "sequence_mut": "ALA", "comment": "Impairs interaction with CRACR2A/EFCAB4B.", "evidence": [ { "database": "UniProtKB", "id": "Q96D31", "url": "https://www.uniprot.org/uniprotkb/Q96D31" }, { "database": "PubMed", "id": "20418871", "url": "https://pubmed.ncbi.nlm.nih.gov/20418871" } ], "uniprot_canonical_ac": "Q96D31-1" } ], "record_id": "pubmed.20418871", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Retinal stimulates ATP hydrolysis by purified and reconstituted ABCR, the photoreceptor-specific ATP-binding cassette transporter responsible for Stargardt disease.", "journal": "The Journal of biological chemistry", "date": "1999", "authors": "Sun H, Molday RS, Nathans J", "reference": { "type": "PubMed", "id": "10075733", "url": "https://pubmed.ncbi.nlm.nih.gov/10075733" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q92781-1", "protein_name": "Retinol dehydrogenase 5", "gene_name": "RDH5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NYR8-1", "protein_name": "Retinol dehydrogenase 8", "gene_name": "RDH8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75452-1", "protein_name": "Retinol dehydrogenase 16", "gene_name": "RDH16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10745-1", "protein_name": "Retinol-binding protein 3", "gene_name": "RBP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02753-1", "protein_name": "Retinol-binding protein 4", "gene_name": "RBP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12271-1", "protein_name": "Retinaldehyde-binding protein 1", "gene_name": "RLBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "F1MWM0-1", "protein_name": "Retinal-specific phospholipid-transporting ATPase ABCA4", "gene_name": "ABCA4", "tax_name": "Bovine" }, { "uniprot_canonical_ac": "Q9BPW9-1", "protein_name": "Dehydrogenase/reductase SDR family member 9", "gene_name": "DHRS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95237-1", "protein_name": "Lecithin retinol acyltransferase", "gene_name": "LRAT", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08100-1", "protein_name": "Rhodopsin", "gene_name": "RHO", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09455-1", "protein_name": "Retinol-binding protein 1", "gene_name": "RBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BX79-1", "protein_name": "Receptor for retinol uptake STRA6", "gene_name": "STRA6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TC12-1", "protein_name": "Retinol dehydrogenase 11", "gene_name": "RDH11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IZV5-1", "protein_name": "Retinol dehydrogenase 10", "gene_name": "RDH10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16518-1", "protein_name": "Retinoid isomerohydrolase", "gene_name": "RPE65", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02766-1", "protein_name": "Transthyretin", "gene_name": "TTR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZWL3-1", "protein_name": "Cytochrome P450 4V2", "gene_name": "CYP4V2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14061-1", "protein_name": "17-beta-hydroxysteroid dehydrogenase type 1", "gene_name": "HSD17B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NEX9-1", "protein_name": "Short-chain dehydrogenase/reductase family 9C member 7", "gene_name": "SDR9C7", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14756-1", "protein_name": "17-beta-hydroxysteroid dehydrogenase type 6", "gene_name": "HSD17B6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13402-1", "protein_name": "Unconventional myosin-VIIa", "gene_name": "MYO7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96NR8-1", "protein_name": "Retinol dehydrogenase 12", "gene_name": "RDH12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78363-1", "protein_name": "Retinal-specific phospholipid-transporting ATPase ABCA4", "gene_name": "ABCA4", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q92781", "url": "https://www.uniprot.org/uniprotkb/Q92781" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.10075733", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 23 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Cloning and characterization of retinol dehydrogenase transcripts expressed in human epidermal keratinocytes.", "journal": "Molecular genetics and metabolism", "date": "1999", "authors": "Jurukovski V, Markova NG, Karaman-Jurukovska N, Randolph RK, Su J, Napoli JL, Simon M", "reference": { "type": "PubMed", "id": "10329026", "url": "https://pubmed.ncbi.nlm.nih.gov/10329026" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q92781-1", "protein_name": "Retinol dehydrogenase 5", "gene_name": "RDH5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NBN7-1", "protein_name": "Retinol dehydrogenase 13", "gene_name": "RDH13", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75452-1", "protein_name": "Retinol dehydrogenase 16", "gene_name": "RDH16", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N3Y7-1", "protein_name": "Epidermal retinol dehydrogenase 2", "gene_name": "SDR16C5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HBH5-1", "protein_name": "Retinol dehydrogenase 14", "gene_name": "RDH14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2A2-1", "protein_name": "2-aminomuconic semialdehyde dehydrogenase", "gene_name": "ALDH8A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42330-1", "protein_name": "Aldo-keto reductase family 1 member C3", "gene_name": "AKR1C3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75911-1", "protein_name": "Short-chain dehydrogenase/reductase 3", "gene_name": "DHRS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BPW9-1", "protein_name": "Dehydrogenase/reductase SDR family member 9", "gene_name": "DHRS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6V0L0-1", "protein_name": "Cytochrome P450 26C1", "gene_name": "CYP26C1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TC12-1", "protein_name": "Retinol dehydrogenase 11", "gene_name": "RDH11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IZV5-1", "protein_name": "Retinol dehydrogenase 10", "gene_name": "RDH10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NR63-1", "protein_name": "Cytochrome P450 26B1", "gene_name": "CYP26B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94788-1", "protein_name": "Retinal dehydrogenase 2", "gene_name": "ALDH1A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47895-1", "protein_name": "Retinaldehyde dehydrogenase 3", "gene_name": "ALDH1A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00326-1", "protein_name": "Alcohol dehydrogenase 1C", "gene_name": "ADH1C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07327-1", "protein_name": "Alcohol dehydrogenase 1A", "gene_name": "ADH1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43174-1", "protein_name": "Cytochrome P450 26A1", "gene_name": "CYP26A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29762-1", "protein_name": "Cellular retinoic acid-binding protein 1", "gene_name": "CRABP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTZ2-1", "protein_name": "Dehydrogenase/reductase SDR family member 4", "gene_name": "DHRS4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08319-1", "protein_name": "All-trans-retinol dehydrogenase [NAD(+)] ADH4", "gene_name": "ADH4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00352-1", "protein_name": "Aldehyde dehydrogenase 1A1", "gene_name": "ALDH1A1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q92781", "url": "https://www.uniprot.org/uniprotkb/Q92781" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.10329026", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 22 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Mutations in the gene encoding 11-cis retinol dehydrogenase cause delayed dark adaptation and fundus albipunctatus.", "journal": "Nature genetics", "date": "1999", "authors": "Yamamoto H, Simon A, Eriksson U, Harris E, Berson EL, Dryja TP", "reference": { "type": "PubMed", "id": "10369264", "url": "https://pubmed.ncbi.nlm.nih.gov/10369264" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q92781-1", "protein_name": "Retinol dehydrogenase 5", "gene_name": "RDH5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NBN7-1", "protein_name": "Retinol dehydrogenase 13", "gene_name": "RDH13", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75452-1", "protein_name": "Retinol dehydrogenase 16", "gene_name": "RDH16", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N3Y7-1", "protein_name": "Epidermal retinol dehydrogenase 2", "gene_name": "SDR16C5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HBH5-1", "protein_name": "Retinol dehydrogenase 14", "gene_name": "RDH14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12271-1", "protein_name": "Retinaldehyde-binding protein 1", "gene_name": "RLBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2A2-1", "protein_name": "2-aminomuconic semialdehyde dehydrogenase", "gene_name": "ALDH8A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42330-1", "protein_name": "Aldo-keto reductase family 1 member C3", "gene_name": "AKR1C3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75911-1", "protein_name": "Short-chain dehydrogenase/reductase 3", "gene_name": "DHRS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BPW9-1", "protein_name": "Dehydrogenase/reductase SDR family member 9", "gene_name": "DHRS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6V0L0-1", "protein_name": "Cytochrome P450 26C1", "gene_name": "CYP26C1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TC12-1", "protein_name": "Retinol dehydrogenase 11", "gene_name": "RDH11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IZV5-1", "protein_name": "Retinol dehydrogenase 10", "gene_name": "RDH10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NR63-1", "protein_name": "Cytochrome P450 26B1", "gene_name": "CYP26B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94788-1", "protein_name": "Retinal dehydrogenase 2", "gene_name": "ALDH1A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47895-1", "protein_name": "Retinaldehyde dehydrogenase 3", "gene_name": "ALDH1A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00326-1", "protein_name": "Alcohol dehydrogenase 1C", "gene_name": "ADH1C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07327-1", "protein_name": "Alcohol dehydrogenase 1A", "gene_name": "ADH1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43174-1", "protein_name": "Cytochrome P450 26A1", "gene_name": "CYP26A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29762-1", "protein_name": "Cellular retinoic acid-binding protein 1", "gene_name": "CRABP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTZ2-1", "protein_name": "Dehydrogenase/reductase SDR family member 4", "gene_name": "DHRS4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08319-1", "protein_name": "All-trans-retinol dehydrogenase [NAD(+)] ADH4", "gene_name": "ADH4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00352-1", "protein_name": "Aldehyde dehydrogenase 1A1", "gene_name": "ALDH1A1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q92781", "url": "https://www.uniprot.org/uniprotkb/Q92781" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.10369264", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 23 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Biochemical properties, tissue expression, and gene structure of a short chain dehydrogenase/ reductase able to catalyze cis-retinol oxidation.", "journal": "Journal of lipid research", "date": "1999-12", "authors": "Gamble M V, Shang E, Zott R P, Mertz J R, Wolgemuth D J, Blaner W S", "reference": { "type": "PubMed", "id": "10588954", "url": "https://pubmed.ncbi.nlm.nih.gov/10588954" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q92781-1", "protein_name": "Retinol dehydrogenase 5", "gene_name": "RDH5", "tax_name": "Human" }, { "uniprot_canonical_ac": "O55240-1", "protein_name": "Retinol dehydrogenase 5", "gene_name": "Rdh5", "tax_name": "Mouse" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q92781", "url": "https://www.uniprot.org/uniprotkb/Q92781" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.10588954", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "11-cis retinol dehydrogenase mutations as a major cause of the congenital night-blindness disorder known as fundus albipunctatus.", "journal": "Molecular vision", "date": "1999", "authors": "Gonzalez-Fernandez F, Kurz D, Bao Y, Newman S, Conway BP, Young JE, Han DP, Khani SC", "reference": { "type": "PubMed", "id": "10617778", "url": "https://pubmed.ncbi.nlm.nih.gov/10617778" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q92781-1", "protein_name": "Retinol dehydrogenase 5", "gene_name": "RDH5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NYR8-1", "protein_name": "Retinol dehydrogenase 8", "gene_name": "RDH8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75452-1", "protein_name": "Retinol dehydrogenase 16", "gene_name": "RDH16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10745-1", "protein_name": "Retinol-binding protein 3", "gene_name": "RBP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02753-1", "protein_name": "Retinol-binding protein 4", "gene_name": "RBP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12271-1", "protein_name": "Retinaldehyde-binding protein 1", "gene_name": "RLBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BPW9-1", "protein_name": "Dehydrogenase/reductase SDR family member 9", "gene_name": "DHRS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95237-1", "protein_name": "Lecithin retinol acyltransferase", "gene_name": "LRAT", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08100-1", "protein_name": "Rhodopsin", "gene_name": "RHO", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09455-1", "protein_name": "Retinol-binding protein 1", "gene_name": "RBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BX79-1", "protein_name": "Receptor for retinol uptake STRA6", "gene_name": "STRA6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TC12-1", "protein_name": "Retinol dehydrogenase 11", "gene_name": "RDH11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IZV5-1", "protein_name": "Retinol dehydrogenase 10", "gene_name": "RDH10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16518-1", "protein_name": "Retinoid isomerohydrolase", "gene_name": "RPE65", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02766-1", "protein_name": "Transthyretin", "gene_name": "TTR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZWL3-1", "protein_name": "Cytochrome P450 4V2", "gene_name": "CYP4V2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14061-1", "protein_name": "17-beta-hydroxysteroid dehydrogenase type 1", "gene_name": "HSD17B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NEX9-1", "protein_name": "Short-chain dehydrogenase/reductase family 9C member 7", "gene_name": "SDR9C7", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14756-1", "protein_name": "17-beta-hydroxysteroid dehydrogenase type 6", "gene_name": "HSD17B6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13402-1", "protein_name": "Unconventional myosin-VIIa", "gene_name": "MYO7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96NR8-1", "protein_name": "Retinol dehydrogenase 12", "gene_name": "RDH12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78363-1", "protein_name": "Retinal-specific phospholipid-transporting ATPase ABCA4", "gene_name": "ABCA4", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q92781", "url": "https://www.uniprot.org/uniprotkb/Q92781" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.10617778", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 22 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Identification and characterization of all-trans-retinol dehydrogenase from photoreceptor outer segments, the visual cycle enzyme that reduces all-trans-retinal to all-trans-retinol.", "journal": "The Journal of biological chemistry", "date": "2000", "authors": "Rattner A, Smallwood PM, Nathans J", "reference": { "type": "PubMed", "id": "10753906", "url": "https://pubmed.ncbi.nlm.nih.gov/10753906" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q92781-1", "protein_name": "Retinol dehydrogenase 5", "gene_name": "RDH5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NYR8-1", "protein_name": "Retinol dehydrogenase 8", "gene_name": "RDH8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75452-1", "protein_name": "Retinol dehydrogenase 16", "gene_name": "RDH16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10745-1", "protein_name": "Retinol-binding protein 3", "gene_name": "RBP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02753-1", "protein_name": "Retinol-binding protein 4", "gene_name": "RBP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12271-1", "protein_name": "Retinaldehyde-binding protein 1", "gene_name": "RLBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9N126-1", "protein_name": "Retinol dehydrogenase 8", "gene_name": "RDH8", "tax_name": "Bovine" }, { "uniprot_canonical_ac": "Q9BPW9-1", "protein_name": "Dehydrogenase/reductase SDR family member 9", "gene_name": "DHRS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95237-1", "protein_name": "Lecithin retinol acyltransferase", "gene_name": "LRAT", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08100-1", "protein_name": "Rhodopsin", "gene_name": "RHO", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09455-1", "protein_name": "Retinol-binding protein 1", "gene_name": "RBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BX79-1", "protein_name": "Receptor for retinol uptake STRA6", "gene_name": "STRA6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TC12-1", "protein_name": "Retinol dehydrogenase 11", "gene_name": "RDH11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IZV5-1", "protein_name": "Retinol dehydrogenase 10", "gene_name": "RDH10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16518-1", "protein_name": "Retinoid isomerohydrolase", "gene_name": "RPE65", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02766-1", "protein_name": "Transthyretin", "gene_name": "TTR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZWL3-1", "protein_name": "Cytochrome P450 4V2", "gene_name": "CYP4V2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14061-1", "protein_name": "17-beta-hydroxysteroid dehydrogenase type 1", "gene_name": "HSD17B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NEX9-1", "protein_name": "Short-chain dehydrogenase/reductase family 9C member 7", "gene_name": "SDR9C7", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14756-1", "protein_name": "17-beta-hydroxysteroid dehydrogenase type 6", "gene_name": "HSD17B6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13402-1", "protein_name": "Unconventional myosin-VIIa", "gene_name": "MYO7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96NR8-1", "protein_name": "Retinol dehydrogenase 12", "gene_name": "RDH12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78363-1", "protein_name": "Retinal-specific phospholipid-transporting ATPase ABCA4", "gene_name": "ABCA4", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q92781", "url": "https://www.uniprot.org/uniprotkb/Q92781" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.10753906", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 23 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Retinoid-binding proteins: mediators of retinoid action.", "journal": "The Biochemical journal", "date": "2000", "authors": "Noy N", "reference": { "type": "PubMed", "id": "10839978", "url": "https://pubmed.ncbi.nlm.nih.gov/10839978" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q92781-1", "protein_name": "Retinol dehydrogenase 5", "gene_name": "RDH5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NBN7-1", "protein_name": "Retinol dehydrogenase 13", "gene_name": "RDH13", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75452-1", "protein_name": "Retinol dehydrogenase 16", "gene_name": "RDH16", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N3Y7-1", "protein_name": "Epidermal retinol dehydrogenase 2", "gene_name": "SDR16C5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HBH5-1", "protein_name": "Retinol dehydrogenase 14", "gene_name": "RDH14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2A2-1", "protein_name": "2-aminomuconic semialdehyde dehydrogenase", "gene_name": "ALDH8A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42330-1", "protein_name": "Aldo-keto reductase family 1 member C3", "gene_name": "AKR1C3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75911-1", "protein_name": "Short-chain dehydrogenase/reductase 3", "gene_name": "DHRS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BPW9-1", "protein_name": "Dehydrogenase/reductase SDR family member 9", "gene_name": "DHRS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6V0L0-1", "protein_name": "Cytochrome P450 26C1", "gene_name": "CYP26C1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TC12-1", "protein_name": "Retinol dehydrogenase 11", "gene_name": "RDH11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IZV5-1", "protein_name": "Retinol dehydrogenase 10", "gene_name": "RDH10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NR63-1", "protein_name": "Cytochrome P450 26B1", "gene_name": "CYP26B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94788-1", "protein_name": "Retinal dehydrogenase 2", "gene_name": "ALDH1A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47895-1", "protein_name": "Retinaldehyde dehydrogenase 3", "gene_name": "ALDH1A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00326-1", "protein_name": "Alcohol dehydrogenase 1C", "gene_name": "ADH1C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07327-1", "protein_name": "Alcohol dehydrogenase 1A", "gene_name": "ADH1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43174-1", "protein_name": "Cytochrome P450 26A1", "gene_name": "CYP26A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29762-1", "protein_name": "Cellular retinoic acid-binding protein 1", "gene_name": "CRABP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTZ2-1", "protein_name": "Dehydrogenase/reductase SDR family member 4", "gene_name": "DHRS4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08319-1", "protein_name": "All-trans-retinol dehydrogenase [NAD(+)] ADH4", "gene_name": "ADH4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00352-1", "protein_name": "Aldehyde dehydrogenase 1A1", "gene_name": "ALDH1A1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q92781", "url": "https://www.uniprot.org/uniprotkb/Q92781" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.10839978", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 22 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "cDNA cloning and expression of a human aldehyde dehydrogenase (ALDH) active with 9-cis-retinal and identification of a rat ortholog, ALDH12.", "journal": "The Journal of biological chemistry", "date": "2000", "authors": "Lin M, Napoli JL", "reference": { "type": "PubMed", "id": "11007799", "url": "https://pubmed.ncbi.nlm.nih.gov/11007799" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q92781-1", "protein_name": "Retinol dehydrogenase 5", "gene_name": "RDH5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NBN7-1", "protein_name": "Retinol dehydrogenase 13", "gene_name": "RDH13", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75452-1", "protein_name": "Retinol dehydrogenase 16", "gene_name": "RDH16", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N3Y7-1", "protein_name": "Epidermal retinol dehydrogenase 2", "gene_name": "SDR16C5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HBH5-1", "protein_name": "Retinol dehydrogenase 14", "gene_name": "RDH14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2A2-1", "protein_name": "2-aminomuconic semialdehyde dehydrogenase", "gene_name": "ALDH8A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42330-1", "protein_name": "Aldo-keto reductase family 1 member C3", "gene_name": "AKR1C3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75911-1", "protein_name": "Short-chain dehydrogenase/reductase 3", "gene_name": "DHRS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BPW9-1", "protein_name": "Dehydrogenase/reductase SDR family member 9", "gene_name": "DHRS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6V0L0-1", "protein_name": "Cytochrome P450 26C1", "gene_name": "CYP26C1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TC12-1", "protein_name": "Retinol dehydrogenase 11", "gene_name": "RDH11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IZV5-1", "protein_name": "Retinol dehydrogenase 10", "gene_name": "RDH10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NR63-1", "protein_name": "Cytochrome P450 26B1", "gene_name": "CYP26B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94788-1", "protein_name": "Retinal dehydrogenase 2", "gene_name": "ALDH1A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47895-1", "protein_name": "Retinaldehyde dehydrogenase 3", "gene_name": "ALDH1A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00326-1", "protein_name": "Alcohol dehydrogenase 1C", "gene_name": "ADH1C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07327-1", "protein_name": "Alcohol dehydrogenase 1A", "gene_name": "ADH1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43174-1", "protein_name": "Cytochrome P450 26A1", "gene_name": "CYP26A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29762-1", "protein_name": "Cellular retinoic acid-binding protein 1", "gene_name": "CRABP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTZ2-1", "protein_name": "Dehydrogenase/reductase SDR family member 4", "gene_name": "DHRS4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08319-1", "protein_name": "All-trans-retinol dehydrogenase [NAD(+)] ADH4", "gene_name": "ADH4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00352-1", "protein_name": "Aldehyde dehydrogenase 1A1", "gene_name": "ALDH1A1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q92781", "url": "https://www.uniprot.org/uniprotkb/Q92781" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.11007799", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 22 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A high association with cone dystrophy in Fundus albipunctatus caused by mutations of the RDH5 gene.", "journal": "Investigative ophthalmology & visual science", "date": "2000", "authors": "Nakamura M, Hotta Y, Tanikawa A, Terasaki H, Miyake Y", "reference": { "type": "PubMed", "id": "11053295", "url": "https://pubmed.ncbi.nlm.nih.gov/11053295" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q92781-1", "protein_name": "Retinol dehydrogenase 5", "gene_name": "RDH5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12271-1", "protein_name": "Retinaldehyde-binding protein 1", "gene_name": "RLBP1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q92781", "url": "https://www.uniprot.org/uniprotkb/Q92781" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.11053295", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Mutations in the 11-cis retinol dehydrogenase gene in Japanese patients with Fundus albipunctatus.", "journal": "Investigative ophthalmology & visual science", "date": "2000", "authors": "Hirose E, Inoue Y, Morimura H, Okamoto N, Fukuda M, Yamamoto S, Fujikado T, Tano Y", "reference": { "type": "PubMed", "id": "11053296", "url": "https://pubmed.ncbi.nlm.nih.gov/11053296" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q92781-1", "protein_name": "Retinol dehydrogenase 5", "gene_name": "RDH5", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q92781", "url": "https://www.uniprot.org/uniprotkb/Q92781" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.11053296", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A novel compound heterozygous mutation in the RDH5 gene in a patient with fundus albipunctatus.", "journal": "American journal of ophthalmology", "date": "2000", "authors": "Kuroiwa S, Kikuchi T, Yoshimura N", "reference": { "type": "PubMed", "id": "11078852", "url": "https://pubmed.ncbi.nlm.nih.gov/11078852" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q92781-1", "protein_name": "Retinol dehydrogenase 5", "gene_name": "RDH5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12271-1", "protein_name": "Retinaldehyde-binding protein 1", "gene_name": "RLBP1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q92781", "url": "https://www.uniprot.org/uniprotkb/Q92781" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.11078852", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The C-terminal nucleotide binding domain of the human retinal ABCR protein is an adenosine triphosphatase.", "journal": "Biochemistry", "date": "2000", "authors": "Biswas EE, Biswas SB", "reference": { "type": "PubMed", "id": "11123914", "url": "https://pubmed.ncbi.nlm.nih.gov/11123914" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q92781-1", "protein_name": "Retinol dehydrogenase 5", "gene_name": "RDH5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NYR8-1", "protein_name": "Retinol dehydrogenase 8", "gene_name": "RDH8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75452-1", "protein_name": "Retinol dehydrogenase 16", "gene_name": "RDH16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10745-1", "protein_name": "Retinol-binding protein 3", "gene_name": "RBP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02753-1", "protein_name": "Retinol-binding protein 4", "gene_name": "RBP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12271-1", "protein_name": "Retinaldehyde-binding protein 1", "gene_name": "RLBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BPW9-1", "protein_name": "Dehydrogenase/reductase SDR family member 9", "gene_name": "DHRS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95237-1", "protein_name": "Lecithin retinol acyltransferase", "gene_name": "LRAT", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08100-1", "protein_name": "Rhodopsin", "gene_name": "RHO", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09455-1", "protein_name": "Retinol-binding protein 1", "gene_name": "RBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BX79-1", "protein_name": "Receptor for retinol uptake STRA6", "gene_name": "STRA6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TC12-1", "protein_name": "Retinol dehydrogenase 11", "gene_name": "RDH11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IZV5-1", "protein_name": "Retinol dehydrogenase 10", "gene_name": "RDH10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16518-1", "protein_name": "Retinoid isomerohydrolase", "gene_name": "RPE65", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02766-1", "protein_name": "Transthyretin", "gene_name": "TTR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZWL3-1", "protein_name": "Cytochrome P450 4V2", "gene_name": "CYP4V2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14061-1", "protein_name": "17-beta-hydroxysteroid dehydrogenase type 1", "gene_name": "HSD17B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NEX9-1", "protein_name": "Short-chain dehydrogenase/reductase family 9C member 7", "gene_name": "SDR9C7", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14756-1", "protein_name": "17-beta-hydroxysteroid dehydrogenase type 6", "gene_name": "HSD17B6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13402-1", "protein_name": "Unconventional myosin-VIIa", "gene_name": "MYO7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96NR8-1", "protein_name": "Retinol dehydrogenase 12", "gene_name": "RDH12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78363-1", "protein_name": "Retinal-specific phospholipid-transporting ATPase ABCA4", "gene_name": "ABCA4", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q92781", "url": "https://www.uniprot.org/uniprotkb/Q92781" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.11123914", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 22 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Rod and cone visual cycle consequences of a null mutation in the 11-cis-retinol dehydrogenase gene in man.", "journal": "Visual neuroscience", "date": "2000", "authors": "Cideciyan AV, Haeseleer F, Fariss RN, Aleman TS, Jang GF, Verlinde CLMJ, Marmor MF, Jacobson SG, Palczewski K", "reference": { "type": "PubMed", "id": "11153648", "url": "https://pubmed.ncbi.nlm.nih.gov/11153648" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q92781-1", "protein_name": "Retinol dehydrogenase 5", "gene_name": "RDH5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12271-1", "protein_name": "Retinaldehyde-binding protein 1", "gene_name": "RLBP1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q92781", "url": "https://www.uniprot.org/uniprotkb/Q92781" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.11153648", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Prostate short-chain dehydrogenase reductase 1 (PSDR1): a new member of the short-chain steroid dehydrogenase/reductase family highly expressed in normal and neoplastic prostate epithelium.", "journal": "Cancer research", "date": "2001", "authors": "Lin B, White JT, Ferguson C, Wang S, Vessella R, Bumgarner R, True LD, Hood L, Nelson PS", "reference": { "type": "PubMed", "id": "11245473", "url": "https://pubmed.ncbi.nlm.nih.gov/11245473" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q92781-1", "protein_name": "Retinol dehydrogenase 5", "gene_name": "RDH5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NBN7-1", "protein_name": "Retinol dehydrogenase 13", "gene_name": "RDH13", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75452-1", "protein_name": "Retinol dehydrogenase 16", "gene_name": "RDH16", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N3Y7-1", "protein_name": "Epidermal retinol dehydrogenase 2", "gene_name": "SDR16C5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HBH5-1", "protein_name": "Retinol dehydrogenase 14", "gene_name": "RDH14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2A2-1", "protein_name": "2-aminomuconic semialdehyde dehydrogenase", "gene_name": "ALDH8A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42330-1", "protein_name": "Aldo-keto reductase family 1 member C3", "gene_name": "AKR1C3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75911-1", "protein_name": "Short-chain dehydrogenase/reductase 3", "gene_name": "DHRS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BPW9-1", "protein_name": "Dehydrogenase/reductase SDR family member 9", "gene_name": "DHRS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6V0L0-1", "protein_name": "Cytochrome P450 26C1", "gene_name": "CYP26C1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TC12-1", "protein_name": "Retinol dehydrogenase 11", "gene_name": "RDH11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IZV5-1", "protein_name": "Retinol dehydrogenase 10", "gene_name": "RDH10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NR63-1", "protein_name": "Cytochrome P450 26B1", "gene_name": "CYP26B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94788-1", "protein_name": "Retinal dehydrogenase 2", "gene_name": "ALDH1A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47895-1", "protein_name": "Retinaldehyde dehydrogenase 3", "gene_name": "ALDH1A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00326-1", "protein_name": "Alcohol dehydrogenase 1C", "gene_name": "ADH1C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07327-1", "protein_name": "Alcohol dehydrogenase 1A", "gene_name": "ADH1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43174-1", "protein_name": "Cytochrome P450 26A1", "gene_name": "CYP26A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29762-1", "protein_name": "Cellular retinoic acid-binding protein 1", "gene_name": "CRABP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTZ2-1", "protein_name": "Dehydrogenase/reductase SDR family member 4", "gene_name": "DHRS4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08319-1", "protein_name": "All-trans-retinol dehydrogenase [NAD(+)] ADH4", "gene_name": "ADH4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00352-1", "protein_name": "Aldehyde dehydrogenase 1A1", "gene_name": "ALDH1A1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q92781", "url": "https://www.uniprot.org/uniprotkb/Q92781" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.11245473", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 22 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Null mutation in the human 11-cis retinol dehydrogenase gene associated with fundus albipunctatus.", "journal": "Ophthalmology", "date": "2001", "authors": "Driessen CA, Janssen BP, Winkens HJ, Kuhlmann LD, Van Vugt AH, Pinckers AJ, Deutman AF, Janssen JJ", "reference": { "type": "PubMed", "id": "11470705", "url": "https://pubmed.ncbi.nlm.nih.gov/11470705" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q92781-1", "protein_name": "Retinol dehydrogenase 5", "gene_name": "RDH5", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q92781", "url": "https://www.uniprot.org/uniprotkb/Q92781" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.11470705", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Biochemical defects in 11-cis-retinol dehydrogenase mutants associated with fundus albipunctatus.", "journal": "The Journal of biological chemistry", "date": "2001", "authors": "Liden M, Romert A, Tryggvason K, Persson B, Eriksson U", "reference": { "type": "PubMed", "id": "11675386", "url": "https://pubmed.ncbi.nlm.nih.gov/11675386" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q92781-1", "protein_name": "Retinol dehydrogenase 5", "gene_name": "RDH5", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q92781", "url": "https://www.uniprot.org/uniprotkb/Q92781" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.11675386", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Evidence that the human gene for prostate short-chain dehydrogenase/reductase (PSDR1) encodes a novel retinal reductase (RalR1).", "journal": "The Journal of biological chemistry", "date": "2002", "authors": "Kedishvili NY, Chumakova OV, Chetyrkin SV, Belyaeva OV, Lapshina EA, Lin DW, Matsumura M, Nelson PS", "reference": { "type": "PubMed", "id": "12036956", "url": "https://pubmed.ncbi.nlm.nih.gov/12036956" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q92781-1", "protein_name": "Retinol dehydrogenase 5", "gene_name": "RDH5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NYR8-1", "protein_name": "Retinol dehydrogenase 8", "gene_name": "RDH8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NBN7-1", "protein_name": "Retinol dehydrogenase 13", "gene_name": "RDH13", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75452-1", "protein_name": "Retinol dehydrogenase 16", "gene_name": "RDH16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10745-1", "protein_name": "Retinol-binding protein 3", "gene_name": "RBP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N3Y7-1", "protein_name": "Epidermal retinol dehydrogenase 2", "gene_name": "SDR16C5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02753-1", "protein_name": "Retinol-binding protein 4", "gene_name": "RBP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HBH5-1", "protein_name": "Retinol dehydrogenase 14", "gene_name": "RDH14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12271-1", "protein_name": "Retinaldehyde-binding protein 1", "gene_name": "RLBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2A2-1", "protein_name": "2-aminomuconic semialdehyde dehydrogenase", "gene_name": "ALDH8A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42330-1", "protein_name": "Aldo-keto reductase family 1 member C3", "gene_name": "AKR1C3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75911-1", "protein_name": "Short-chain dehydrogenase/reductase 3", "gene_name": "DHRS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BPW9-1", "protein_name": "Dehydrogenase/reductase SDR family member 9", "gene_name": "DHRS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95237-1", "protein_name": "Lecithin retinol acyltransferase", "gene_name": "LRAT", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6V0L0-1", "protein_name": "Cytochrome P450 26C1", "gene_name": "CYP26C1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08100-1", "protein_name": "Rhodopsin", "gene_name": "RHO", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09455-1", "protein_name": "Retinol-binding protein 1", "gene_name": "RBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BX79-1", "protein_name": "Receptor for retinol uptake STRA6", "gene_name": "STRA6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TC12-1", "protein_name": "Retinol dehydrogenase 11", "gene_name": "RDH11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IZV5-1", "protein_name": "Retinol dehydrogenase 10", "gene_name": "RDH10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16518-1", "protein_name": "Retinoid isomerohydrolase", "gene_name": "RPE65", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02766-1", "protein_name": "Transthyretin", "gene_name": "TTR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NR63-1", "protein_name": "Cytochrome P450 26B1", "gene_name": "CYP26B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94788-1", "protein_name": "Retinal dehydrogenase 2", "gene_name": "ALDH1A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47895-1", "protein_name": "Retinaldehyde dehydrogenase 3", "gene_name": "ALDH1A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00326-1", "protein_name": "Alcohol dehydrogenase 1C", "gene_name": "ADH1C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07327-1", "protein_name": "Alcohol dehydrogenase 1A", "gene_name": "ADH1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43174-1", "protein_name": "Cytochrome P450 26A1", "gene_name": "CYP26A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZWL3-1", "protein_name": "Cytochrome P450 4V2", "gene_name": "CYP4V2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14061-1", "protein_name": "17-beta-hydroxysteroid dehydrogenase type 1", "gene_name": "HSD17B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NEX9-1", "protein_name": "Short-chain dehydrogenase/reductase family 9C member 7", "gene_name": "SDR9C7", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14756-1", "protein_name": "17-beta-hydroxysteroid dehydrogenase type 6", "gene_name": "HSD17B6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13402-1", "protein_name": "Unconventional myosin-VIIa", "gene_name": "MYO7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29762-1", "protein_name": "Cellular retinoic acid-binding protein 1", "gene_name": "CRABP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96NR8-1", "protein_name": "Retinol dehydrogenase 12", "gene_name": "RDH12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTZ2-1", "protein_name": "Dehydrogenase/reductase SDR family member 4", "gene_name": "DHRS4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08319-1", "protein_name": "All-trans-retinol dehydrogenase [NAD(+)] ADH4", "gene_name": "ADH4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78363-1", "protein_name": "Retinal-specific phospholipid-transporting ATPase ABCA4", "gene_name": "ABCA4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00352-1", "protein_name": "Aldehyde dehydrogenase 1A1", "gene_name": "ALDH1A1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q92781", "url": "https://www.uniprot.org/uniprotkb/Q92781" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.12036956", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 39 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Rhodopsin with 11-cis-locked chromophore is capable of forming an active state photoproduct.", "journal": "The Journal of biological chemistry", "date": "2002", "authors": "Fan G, Siebert F, Sheves M, Vogel R", "reference": { "type": "PubMed", "id": "12177057", "url": "https://pubmed.ncbi.nlm.nih.gov/12177057" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q92781-1", "protein_name": "Retinol dehydrogenase 5", "gene_name": "RDH5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NYR8-1", "protein_name": "Retinol dehydrogenase 8", "gene_name": "RDH8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75452-1", "protein_name": "Retinol dehydrogenase 16", "gene_name": "RDH16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10745-1", "protein_name": "Retinol-binding protein 3", "gene_name": "RBP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02753-1", "protein_name": "Retinol-binding protein 4", "gene_name": "RBP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12271-1", "protein_name": "Retinaldehyde-binding protein 1", "gene_name": "RLBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75911-1", "protein_name": "Short-chain dehydrogenase/reductase 3", "gene_name": "DHRS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BPW9-1", "protein_name": "Dehydrogenase/reductase SDR family member 9", "gene_name": "DHRS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95237-1", "protein_name": "Lecithin retinol acyltransferase", "gene_name": "LRAT", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04000-1", "protein_name": "Long-wave-sensitive opsin 1", "gene_name": "OPN1LW", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04001-1", "protein_name": "Medium-wave-sensitive opsin 1", "gene_name": "OPN1MW2; OPN1MW", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08100-1", "protein_name": "Rhodopsin", "gene_name": "RHO", "tax_name": "Human" }, { "uniprot_canonical_ac": "P03999-1", "protein_name": "Short-wave-sensitive opsin 1", "gene_name": "OPN1SW", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09455-1", "protein_name": "Retinol-binding protein 1", "gene_name": "RBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BX79-1", "protein_name": "Receptor for retinol uptake STRA6", "gene_name": "STRA6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TC12-1", "protein_name": "Retinol dehydrogenase 11", "gene_name": "RDH11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IZV5-1", "protein_name": "Retinol dehydrogenase 10", "gene_name": "RDH10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16518-1", "protein_name": "Retinoid isomerohydrolase", "gene_name": "RPE65", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02766-1", "protein_name": "Transthyretin", "gene_name": "TTR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZWL3-1", "protein_name": "Cytochrome P450 4V2", "gene_name": "CYP4V2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14061-1", "protein_name": "17-beta-hydroxysteroid dehydrogenase type 1", "gene_name": "HSD17B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NEX9-1", "protein_name": "Short-chain dehydrogenase/reductase family 9C member 7", "gene_name": "SDR9C7", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14756-1", "protein_name": "17-beta-hydroxysteroid dehydrogenase type 6", "gene_name": "HSD17B6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13402-1", "protein_name": "Unconventional myosin-VIIa", "gene_name": "MYO7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96NR8-1", "protein_name": "Retinol dehydrogenase 12", "gene_name": "RDH12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6E213-1", "protein_name": "Acyl-CoA wax alcohol acyltransferase 2", "gene_name": "AWAT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78363-1", "protein_name": "Retinal-specific phospholipid-transporting ATPase ABCA4", "gene_name": "ABCA4", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q92781", "url": "https://www.uniprot.org/uniprotkb/Q92781" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.12177057", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 27 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Dual-substrate specificity short chain retinol dehydrogenases from the vertebrate retina.", "journal": "The Journal of biological chemistry", "date": "2002", "authors": "Haeseleer F, Jang GF, Imanishi Y, Driessen CAGG, Matsumura M, Nelson PS, Palczewski K", "reference": { "type": "PubMed", "id": "12226107", "url": "https://pubmed.ncbi.nlm.nih.gov/12226107" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q92781-1", "protein_name": "Retinol dehydrogenase 5", "gene_name": "RDH5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NBN7-1", "protein_name": "Retinol dehydrogenase 13", "gene_name": "RDH13", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75452-1", "protein_name": "Retinol dehydrogenase 16", "gene_name": "RDH16", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N3Y7-1", "protein_name": "Epidermal retinol dehydrogenase 2", "gene_name": "SDR16C5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HBH5-1", "protein_name": "Retinol dehydrogenase 14", "gene_name": "RDH14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2A2-1", "protein_name": "2-aminomuconic semialdehyde dehydrogenase", "gene_name": "ALDH8A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42330-1", "protein_name": "Aldo-keto reductase family 1 member C3", "gene_name": "AKR1C3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75911-1", "protein_name": "Short-chain dehydrogenase/reductase 3", "gene_name": "DHRS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BPW9-1", "protein_name": "Dehydrogenase/reductase SDR family member 9", "gene_name": "DHRS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6V0L0-1", "protein_name": "Cytochrome P450 26C1", "gene_name": "CYP26C1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8BYK4-1", "protein_name": "Retinol dehydrogenase 12", "gene_name": "Rdh12", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9ERI6-1", "protein_name": "Retinol dehydrogenase 14", "gene_name": "Rdh14", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8TC12-1", "protein_name": "Retinol dehydrogenase 11", "gene_name": "RDH11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IZV5-1", "protein_name": "Retinol dehydrogenase 10", "gene_name": "RDH10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NR63-1", "protein_name": "Cytochrome P450 26B1", "gene_name": "CYP26B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94788-1", "protein_name": "Retinal dehydrogenase 2", "gene_name": "ALDH1A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47895-1", "protein_name": "Retinaldehyde dehydrogenase 3", "gene_name": "ALDH1A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00326-1", "protein_name": "Alcohol dehydrogenase 1C", "gene_name": "ADH1C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07327-1", "protein_name": "Alcohol dehydrogenase 1A", "gene_name": "ADH1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43174-1", "protein_name": "Cytochrome P450 26A1", "gene_name": "CYP26A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29762-1", "protein_name": "Cellular retinoic acid-binding protein 1", "gene_name": "CRABP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96NR8-1", "protein_name": "Retinol dehydrogenase 12", "gene_name": "RDH12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTZ2-1", "protein_name": "Dehydrogenase/reductase SDR family member 4", "gene_name": "DHRS4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P59837-1", "protein_name": "Retinol dehydrogenase 12", "gene_name": "RDH12", "tax_name": "Bovine" }, { "uniprot_canonical_ac": "Q17QW3-1", "protein_name": "Retinol dehydrogenase 14", "gene_name": "RDH14", "tax_name": "Bovine" }, { "uniprot_canonical_ac": "P08319-1", "protein_name": "All-trans-retinol dehydrogenase [NAD(+)] ADH4", "gene_name": "ADH4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00352-1", "protein_name": "Aldehyde dehydrogenase 1A1", "gene_name": "ALDH1A1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q92781", "url": "https://www.uniprot.org/uniprotkb/Q92781" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.12226107", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 27 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Cloning and characterization of a novel all-trans retinol short-chain dehydrogenase/reductase from the RPE.", "journal": "Investigative ophthalmology & visual science", "date": "2002", "authors": "Wu BX, Chen Y, Chen Y, Fan J, Rohrer B, Crouch RK, Ma JX", "reference": { "type": "PubMed", "id": "12407145", "url": "https://pubmed.ncbi.nlm.nih.gov/12407145" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q92781-1", "protein_name": "Retinol dehydrogenase 5", "gene_name": "RDH5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NYR8-1", "protein_name": "Retinol dehydrogenase 8", "gene_name": "RDH8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75452-1", "protein_name": "Retinol dehydrogenase 16", "gene_name": "RDH16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10745-1", "protein_name": "Retinol-binding protein 3", "gene_name": "RBP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02753-1", "protein_name": "Retinol-binding protein 4", "gene_name": "RBP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12271-1", "protein_name": "Retinaldehyde-binding protein 1", "gene_name": "RLBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8VCH7-1", "protein_name": "Retinol dehydrogenase 10", "gene_name": "Rdh10", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9BPW9-1", "protein_name": "Dehydrogenase/reductase SDR family member 9", "gene_name": "DHRS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95237-1", "protein_name": "Lecithin retinol acyltransferase", "gene_name": "LRAT", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08100-1", "protein_name": "Rhodopsin", "gene_name": "RHO", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09455-1", "protein_name": "Retinol-binding protein 1", "gene_name": "RBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BX79-1", "protein_name": "Receptor for retinol uptake STRA6", "gene_name": "STRA6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TC12-1", "protein_name": "Retinol dehydrogenase 11", "gene_name": "RDH11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IZV5-1", "protein_name": "Retinol dehydrogenase 10", "gene_name": "RDH10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16518-1", "protein_name": "Retinoid isomerohydrolase", "gene_name": "RPE65", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02766-1", "protein_name": "Transthyretin", "gene_name": "TTR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZWL3-1", "protein_name": "Cytochrome P450 4V2", "gene_name": "CYP4V2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14061-1", "protein_name": "17-beta-hydroxysteroid dehydrogenase type 1", "gene_name": "HSD17B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NEX9-1", "protein_name": "Short-chain dehydrogenase/reductase family 9C member 7", "gene_name": "SDR9C7", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14756-1", "protein_name": "17-beta-hydroxysteroid dehydrogenase type 6", "gene_name": "HSD17B6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13402-1", "protein_name": "Unconventional myosin-VIIa", "gene_name": "MYO7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96NR8-1", "protein_name": "Retinol dehydrogenase 12", "gene_name": "RDH12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8HZT6-1", "protein_name": "Retinol dehydrogenase 10", "gene_name": "RDH10", "tax_name": "Bovine" }, { "uniprot_canonical_ac": "P78363-1", "protein_name": "Retinal-specific phospholipid-transporting ATPase ABCA4", "gene_name": "ABCA4", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q92781", "url": "https://www.uniprot.org/uniprotkb/Q92781" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.12407145", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 24 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Reduction of all-trans-retinal in the mouse liver peroxisome fraction by the short-chain dehydrogenase/reductase RRD: induction by the PPAR alpha ligand clofibrate.", "journal": "Biochemistry", "date": "2003", "authors": "Lei Z, Chen W, Zhang M, Napoli JL", "reference": { "type": "PubMed", "id": "12680773", "url": "https://pubmed.ncbi.nlm.nih.gov/12680773" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q92781-1", "protein_name": "Retinol dehydrogenase 5", "gene_name": "RDH5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NBN7-1", "protein_name": "Retinol dehydrogenase 13", "gene_name": "RDH13", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75452-1", "protein_name": "Retinol dehydrogenase 16", "gene_name": "RDH16", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N3Y7-1", "protein_name": "Epidermal retinol dehydrogenase 2", "gene_name": "SDR16C5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HBH5-1", "protein_name": "Retinol dehydrogenase 14", "gene_name": "RDH14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2A2-1", "protein_name": "2-aminomuconic semialdehyde dehydrogenase", "gene_name": "ALDH8A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42330-1", "protein_name": "Aldo-keto reductase family 1 member C3", "gene_name": "AKR1C3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75911-1", "protein_name": "Short-chain dehydrogenase/reductase 3", "gene_name": "DHRS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BPW9-1", "protein_name": "Dehydrogenase/reductase SDR family member 9", "gene_name": "DHRS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6V0L0-1", "protein_name": "Cytochrome P450 26C1", "gene_name": "CYP26C1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TC12-1", "protein_name": "Retinol dehydrogenase 11", "gene_name": "RDH11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IZV5-1", "protein_name": "Retinol dehydrogenase 10", "gene_name": "RDH10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NR63-1", "protein_name": "Cytochrome P450 26B1", "gene_name": "CYP26B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94788-1", "protein_name": "Retinal dehydrogenase 2", "gene_name": "ALDH1A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47895-1", "protein_name": "Retinaldehyde dehydrogenase 3", "gene_name": "ALDH1A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00326-1", "protein_name": "Alcohol dehydrogenase 1C", "gene_name": "ADH1C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07327-1", "protein_name": "Alcohol dehydrogenase 1A", "gene_name": "ADH1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43174-1", "protein_name": "Cytochrome P450 26A1", "gene_name": "CYP26A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29762-1", "protein_name": "Cellular retinoic acid-binding protein 1", "gene_name": "CRABP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTZ2-1", "protein_name": "Dehydrogenase/reductase SDR family member 4", "gene_name": "DHRS4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08319-1", "protein_name": "All-trans-retinol dehydrogenase [NAD(+)] ADH4", "gene_name": "ADH4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00352-1", "protein_name": "Aldehyde dehydrogenase 1A1", "gene_name": "ALDH1A1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q92781", "url": "https://www.uniprot.org/uniprotkb/Q92781" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.12680773", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 22 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Macular dystrophy in a Japanese family with fundus albipunctatus.", "journal": "American journal of ophthalmology", "date": "2003", "authors": "Hotta K, Nakamura M, Kondo M, Ito S, Terasaki H, Miyake Y, Hida T", "reference": { "type": "PubMed", "id": "12788147", "url": "https://pubmed.ncbi.nlm.nih.gov/12788147" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q92781-1", "protein_name": "Retinol dehydrogenase 5", "gene_name": "RDH5", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q92781", "url": "https://www.uniprot.org/uniprotkb/Q92781" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.12788147", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A novel RDH5 gene mutation in a patient with fundus albipunctatus presenting with macular atrophy and fading white dots.", "journal": "American journal of ophthalmology", "date": "2003", "authors": "Yamamoto H, Yakushijin K, Kusuhara S, Escano MF, Nagai A, Negi A", "reference": { "type": "PubMed", "id": "12967826", "url": "https://pubmed.ncbi.nlm.nih.gov/12967826" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q92781-1", "protein_name": "Retinol dehydrogenase 5", "gene_name": "RDH5", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q92781", "url": "https://www.uniprot.org/uniprotkb/Q92781" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.12967826", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A novel human cytochrome P450, CYP26C1, involved in metabolism of 9-cis and all-trans isomers of retinoic acid.", "journal": "The Journal of biological chemistry", "date": "2004", "authors": "Taimi M, Helvig C, Wisniewski J, Ramshaw H, White J, Amad M, Korczak B, Petkovich M", "reference": { "type": "PubMed", "id": "14532297", "url": "https://pubmed.ncbi.nlm.nih.gov/14532297" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q92781-1", "protein_name": "Retinol dehydrogenase 5", "gene_name": "RDH5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NBN7-1", "protein_name": "Retinol dehydrogenase 13", "gene_name": "RDH13", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75452-1", "protein_name": "Retinol dehydrogenase 16", "gene_name": "RDH16", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N3Y7-1", "protein_name": "Epidermal retinol dehydrogenase 2", "gene_name": "SDR16C5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HBH5-1", "protein_name": "Retinol dehydrogenase 14", "gene_name": "RDH14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2A2-1", "protein_name": "2-aminomuconic semialdehyde dehydrogenase", "gene_name": "ALDH8A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42330-1", "protein_name": "Aldo-keto reductase family 1 member C3", "gene_name": "AKR1C3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75911-1", "protein_name": "Short-chain dehydrogenase/reductase 3", "gene_name": "DHRS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BPW9-1", "protein_name": "Dehydrogenase/reductase SDR family member 9", "gene_name": "DHRS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6V0L0-1", "protein_name": "Cytochrome P450 26C1", "gene_name": "CYP26C1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07973-1", "protein_name": "1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial", "gene_name": "CYP24A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TC12-1", "protein_name": "Retinol dehydrogenase 11", "gene_name": "RDH11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IZV5-1", "protein_name": "Retinol dehydrogenase 10", "gene_name": "RDH10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6VVX0-1", "protein_name": "Vitamin D 25-hydroxylase", "gene_name": "CYP2R1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NR63-1", "protein_name": "Cytochrome P450 26B1", "gene_name": "CYP26B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15528-1", "protein_name": "25-hydroxyvitamin D-1 alpha hydroxylase, mitochondrial", "gene_name": "CYP27B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94788-1", "protein_name": "Retinal dehydrogenase 2", "gene_name": "ALDH1A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47895-1", "protein_name": "Retinaldehyde dehydrogenase 3", "gene_name": "ALDH1A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00326-1", "protein_name": "Alcohol dehydrogenase 1C", "gene_name": "ADH1C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07327-1", "protein_name": "Alcohol dehydrogenase 1A", "gene_name": "ADH1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43174-1", "protein_name": "Cytochrome P450 26A1", "gene_name": "CYP26A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29762-1", "protein_name": "Cellular retinoic acid-binding protein 1", "gene_name": "CRABP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTZ2-1", "protein_name": "Dehydrogenase/reductase SDR family member 4", "gene_name": "DHRS4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08319-1", "protein_name": "All-trans-retinol dehydrogenase [NAD(+)] ADH4", "gene_name": "ADH4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00352-1", "protein_name": "Aldehyde dehydrogenase 1A1", "gene_name": "ALDH1A1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q92781", "url": "https://www.uniprot.org/uniprotkb/Q92781" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.14532297", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 25 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Genomic organization and transcription of the human retinol dehydrogenase 10 (RDH10) gene.", "journal": "FEBS letters", "date": "2003", "authors": "Picozzi P, Marozzi A, Fornasari D, Benfante R, Barisani D, Meneveri R, Ginelli E", "reference": { "type": "PubMed", "id": "14596915", "url": "https://pubmed.ncbi.nlm.nih.gov/14596915" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q92781-1", "protein_name": "Retinol dehydrogenase 5", "gene_name": "RDH5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NBN7-1", "protein_name": "Retinol dehydrogenase 13", "gene_name": "RDH13", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75452-1", "protein_name": "Retinol dehydrogenase 16", "gene_name": "RDH16", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N3Y7-1", "protein_name": "Epidermal retinol dehydrogenase 2", "gene_name": "SDR16C5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HBH5-1", "protein_name": "Retinol dehydrogenase 14", "gene_name": "RDH14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2A2-1", "protein_name": "2-aminomuconic semialdehyde dehydrogenase", "gene_name": "ALDH8A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42330-1", "protein_name": "Aldo-keto reductase family 1 member C3", "gene_name": "AKR1C3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75911-1", "protein_name": "Short-chain dehydrogenase/reductase 3", "gene_name": "DHRS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BPW9-1", "protein_name": "Dehydrogenase/reductase SDR family member 9", "gene_name": "DHRS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6V0L0-1", "protein_name": "Cytochrome P450 26C1", "gene_name": "CYP26C1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TC12-1", "protein_name": "Retinol dehydrogenase 11", "gene_name": "RDH11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IZV5-1", "protein_name": "Retinol dehydrogenase 10", "gene_name": "RDH10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NR63-1", "protein_name": "Cytochrome P450 26B1", "gene_name": "CYP26B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94788-1", "protein_name": "Retinal dehydrogenase 2", "gene_name": "ALDH1A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47895-1", "protein_name": "Retinaldehyde dehydrogenase 3", "gene_name": "ALDH1A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00326-1", "protein_name": "Alcohol dehydrogenase 1C", "gene_name": "ADH1C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07327-1", "protein_name": "Alcohol dehydrogenase 1A", "gene_name": "ADH1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43174-1", "protein_name": "Cytochrome P450 26A1", "gene_name": "CYP26A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29762-1", "protein_name": "Cellular retinoic acid-binding protein 1", "gene_name": "CRABP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTZ2-1", "protein_name": "Dehydrogenase/reductase SDR family member 4", "gene_name": "DHRS4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08319-1", "protein_name": "All-trans-retinol dehydrogenase [NAD(+)] ADH4", "gene_name": "ADH4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00352-1", "protein_name": "Aldehyde dehydrogenase 1A1", "gene_name": "ALDH1A1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q92781", "url": "https://www.uniprot.org/uniprotkb/Q92781" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.14596915", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 22 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Retinosomes: new insights into intracellular managing of hydrophobic substances in lipid bodies.", "journal": "The Journal of cell biology", "date": "2004", "authors": "Imanishi Y, Gerke V, Palczewski K", "reference": { "type": "PubMed", "id": "15314061", "url": "https://pubmed.ncbi.nlm.nih.gov/15314061" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q92781-1", "protein_name": "Retinol dehydrogenase 5", "gene_name": "RDH5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NYR8-1", "protein_name": "Retinol dehydrogenase 8", "gene_name": "RDH8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75452-1", "protein_name": "Retinol dehydrogenase 16", "gene_name": "RDH16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10745-1", "protein_name": "Retinol-binding protein 3", "gene_name": "RBP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02753-1", "protein_name": "Retinol-binding protein 4", "gene_name": "RBP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12271-1", "protein_name": "Retinaldehyde-binding protein 1", "gene_name": "RLBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BPW9-1", "protein_name": "Dehydrogenase/reductase SDR family member 9", "gene_name": "DHRS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95237-1", "protein_name": "Lecithin retinol acyltransferase", "gene_name": "LRAT", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08100-1", "protein_name": "Rhodopsin", "gene_name": "RHO", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09455-1", "protein_name": "Retinol-binding protein 1", "gene_name": "RBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BX79-1", "protein_name": "Receptor for retinol uptake STRA6", "gene_name": "STRA6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TC12-1", "protein_name": "Retinol dehydrogenase 11", "gene_name": "RDH11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IZV5-1", "protein_name": "Retinol dehydrogenase 10", "gene_name": "RDH10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16518-1", "protein_name": "Retinoid isomerohydrolase", "gene_name": "RPE65", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02766-1", "protein_name": "Transthyretin", "gene_name": "TTR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZWL3-1", "protein_name": "Cytochrome P450 4V2", "gene_name": "CYP4V2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14061-1", "protein_name": "17-beta-hydroxysteroid dehydrogenase type 1", "gene_name": "HSD17B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NEX9-1", "protein_name": "Short-chain dehydrogenase/reductase family 9C member 7", "gene_name": "SDR9C7", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14756-1", "protein_name": "17-beta-hydroxysteroid dehydrogenase type 6", "gene_name": "HSD17B6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13402-1", "protein_name": "Unconventional myosin-VIIa", "gene_name": "MYO7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96NR8-1", "protein_name": "Retinol dehydrogenase 12", "gene_name": "RDH12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78363-1", "protein_name": "Retinal-specific phospholipid-transporting ATPase ABCA4", "gene_name": "ABCA4", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q92781", "url": "https://www.uniprot.org/uniprotkb/Q92781" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.15314061", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 22 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "N-retinylidene-phosphatidylethanolamine is the preferred retinoid substrate for the photoreceptor-specific ABC transporter ABCA4 (ABCR).", "journal": "The Journal of biological chemistry", "date": "2004", "authors": "Beharry S, Zhong M, Molday RS", "reference": { "type": "PubMed", "id": "15471866", "url": "https://pubmed.ncbi.nlm.nih.gov/15471866" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q92781-1", "protein_name": "Retinol dehydrogenase 5", "gene_name": "RDH5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NYR8-1", "protein_name": "Retinol dehydrogenase 8", "gene_name": "RDH8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75452-1", "protein_name": "Retinol dehydrogenase 16", "gene_name": "RDH16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10745-1", "protein_name": "Retinol-binding protein 3", "gene_name": "RBP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02753-1", "protein_name": "Retinol-binding protein 4", "gene_name": "RBP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12271-1", "protein_name": "Retinaldehyde-binding protein 1", "gene_name": "RLBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "F1MWM0-1", "protein_name": "Retinal-specific phospholipid-transporting ATPase ABCA4", "gene_name": "ABCA4", "tax_name": "Bovine" }, { "uniprot_canonical_ac": "Q9BPW9-1", "protein_name": "Dehydrogenase/reductase SDR family member 9", "gene_name": "DHRS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95237-1", "protein_name": "Lecithin retinol acyltransferase", "gene_name": "LRAT", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08100-1", "protein_name": "Rhodopsin", "gene_name": "RHO", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09455-1", "protein_name": "Retinol-binding protein 1", "gene_name": "RBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BX79-1", "protein_name": "Receptor for retinol uptake STRA6", "gene_name": "STRA6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TC12-1", "protein_name": "Retinol dehydrogenase 11", "gene_name": "RDH11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IZV5-1", "protein_name": "Retinol dehydrogenase 10", "gene_name": "RDH10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16518-1", "protein_name": "Retinoid isomerohydrolase", "gene_name": "RPE65", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02766-1", "protein_name": "Transthyretin", "gene_name": "TTR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZWL3-1", "protein_name": "Cytochrome P450 4V2", "gene_name": "CYP4V2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14061-1", "protein_name": "17-beta-hydroxysteroid dehydrogenase type 1", "gene_name": "HSD17B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NEX9-1", "protein_name": "Short-chain dehydrogenase/reductase family 9C member 7", "gene_name": "SDR9C7", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14756-1", "protein_name": "17-beta-hydroxysteroid dehydrogenase type 6", "gene_name": "HSD17B6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13402-1", "protein_name": "Unconventional myosin-VIIa", "gene_name": "MYO7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96NR8-1", "protein_name": "Retinol dehydrogenase 12", "gene_name": "RDH12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78363-1", "protein_name": "Retinal-specific phospholipid-transporting ATPase ABCA4", "gene_name": "ABCA4", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q92781", "url": "https://www.uniprot.org/uniprotkb/Q92781" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.15471866", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 23 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Biochemical properties of purified human retinol dehydrogenase 12 (RDH12): catalytic efficiency toward retinoids and C9 aldehydes and effects of cellular retinol-binding protein type I (CRBPI) and cellular retinaldehyde-binding protein (CRALBP) on the oxidation and reduction of retinoids.", "journal": "Biochemistry", "date": "2005", "authors": "Belyaeva OV, Korkina OV, Stetsenko AV, Kim T, Nelson PS, Kedishvili NY", "reference": { "type": "PubMed", "id": "15865448", "url": "https://pubmed.ncbi.nlm.nih.gov/15865448" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q92781-1", "protein_name": "Retinol dehydrogenase 5", "gene_name": "RDH5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NYR8-1", "protein_name": "Retinol dehydrogenase 8", "gene_name": "RDH8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75452-1", "protein_name": "Retinol dehydrogenase 16", "gene_name": "RDH16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10745-1", "protein_name": "Retinol-binding protein 3", "gene_name": "RBP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02753-1", "protein_name": "Retinol-binding protein 4", "gene_name": "RBP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12271-1", "protein_name": "Retinaldehyde-binding protein 1", "gene_name": "RLBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BPW9-1", "protein_name": "Dehydrogenase/reductase SDR family member 9", "gene_name": "DHRS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95237-1", "protein_name": "Lecithin retinol acyltransferase", "gene_name": "LRAT", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08100-1", "protein_name": "Rhodopsin", "gene_name": "RHO", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09455-1", "protein_name": "Retinol-binding protein 1", "gene_name": "RBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BX79-1", "protein_name": "Receptor for retinol uptake STRA6", "gene_name": "STRA6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TC12-1", "protein_name": "Retinol dehydrogenase 11", "gene_name": "RDH11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IZV5-1", "protein_name": "Retinol dehydrogenase 10", "gene_name": "RDH10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16518-1", "protein_name": "Retinoid isomerohydrolase", "gene_name": "RPE65", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02766-1", "protein_name": "Transthyretin", "gene_name": "TTR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZWL3-1", "protein_name": "Cytochrome P450 4V2", "gene_name": "CYP4V2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14061-1", "protein_name": "17-beta-hydroxysteroid dehydrogenase type 1", "gene_name": "HSD17B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NEX9-1", "protein_name": "Short-chain dehydrogenase/reductase family 9C member 7", "gene_name": "SDR9C7", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14756-1", "protein_name": "17-beta-hydroxysteroid dehydrogenase type 6", "gene_name": "HSD17B6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13402-1", "protein_name": "Unconventional myosin-VIIa", "gene_name": "MYO7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96NR8-1", "protein_name": "Retinol dehydrogenase 12", "gene_name": "RDH12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78363-1", "protein_name": "Retinal-specific phospholipid-transporting ATPase ABCA4", "gene_name": "ABCA4", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q92781", "url": "https://www.uniprot.org/uniprotkb/Q92781" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.15865448", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 22 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A membrane receptor for retinol binding protein mediates cellular uptake of vitamin A.", "journal": "Science (New York, N.Y.)", "date": "2007", "authors": "Kawaguchi R, Yu J, Honda J, Hu J, Whitelegge J, Ping P, Wiita P, Bok D, Sun H", "reference": { "type": "PubMed", "id": "17255476", "url": "https://pubmed.ncbi.nlm.nih.gov/17255476" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q92781-1", "protein_name": "Retinol dehydrogenase 5", "gene_name": "RDH5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NYR8-1", "protein_name": "Retinol dehydrogenase 8", "gene_name": "RDH8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75452-1", "protein_name": "Retinol dehydrogenase 16", "gene_name": "RDH16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10745-1", "protein_name": "Retinol-binding protein 3", "gene_name": "RBP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02753-1", "protein_name": "Retinol-binding protein 4", "gene_name": "RBP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12271-1", "protein_name": "Retinaldehyde-binding protein 1", "gene_name": "RLBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q0V8E7-1", "protein_name": "Receptor for retinol uptake STRA6", "gene_name": "STRA6", "tax_name": "Bovine" }, { "uniprot_canonical_ac": "Q9BPW9-1", "protein_name": "Dehydrogenase/reductase SDR family member 9", "gene_name": "DHRS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95237-1", "protein_name": "Lecithin retinol acyltransferase", "gene_name": "LRAT", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08100-1", "protein_name": "Rhodopsin", "gene_name": "RHO", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09455-1", "protein_name": "Retinol-binding protein 1", "gene_name": "RBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BX79-1", "protein_name": "Receptor for retinol uptake STRA6", "gene_name": "STRA6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TC12-1", "protein_name": "Retinol dehydrogenase 11", "gene_name": "RDH11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IZV5-1", "protein_name": "Retinol dehydrogenase 10", "gene_name": "RDH10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16518-1", "protein_name": "Retinoid isomerohydrolase", "gene_name": "RPE65", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02766-1", "protein_name": "Transthyretin", "gene_name": "TTR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZWL3-1", "protein_name": "Cytochrome P450 4V2", "gene_name": "CYP4V2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14061-1", "protein_name": "17-beta-hydroxysteroid dehydrogenase type 1", "gene_name": "HSD17B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NEX9-1", "protein_name": "Short-chain dehydrogenase/reductase family 9C member 7", "gene_name": "SDR9C7", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14756-1", "protein_name": "17-beta-hydroxysteroid dehydrogenase type 6", "gene_name": "HSD17B6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13402-1", "protein_name": "Unconventional myosin-VIIa", "gene_name": "MYO7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96NR8-1", "protein_name": "Retinol dehydrogenase 12", "gene_name": "RDH12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18902-1", "protein_name": "Retinol-binding protein 4", "gene_name": "RBP4", "tax_name": "Bovine" }, { "uniprot_canonical_ac": "P78363-1", "protein_name": "Retinal-specific phospholipid-transporting ATPase ABCA4", "gene_name": "ABCA4", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q92781", "url": "https://www.uniprot.org/uniprotkb/Q92781" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 256, "end_pos": 256, "sequence_org": "L", "sequence_mut": "H", "comment": "Not expressed at the cell surface; when associated with H-336.", "evidence": [ { "database": "UniProtKB", "id": "Q0V8E7", "url": "https://www.uniprot.org/uniprotkb/Q0V8E7" }, { "database": "PubMed", "id": "17255476", "url": "https://pubmed.ncbi.nlm.nih.gov/17255476" } ], "uniprot_canonical_ac": "Q0V8E7-1" }, { "start_pos": 297, "end_pos": 297, "sequence_org": "L", "sequence_mut": "R", "comment": "Not expressed at the cell surface.", "evidence": [ { "database": "UniProtKB", "id": "Q0V8E7", "url": "https://www.uniprot.org/uniprotkb/Q0V8E7" }, { "database": "PubMed", "id": "17255476", "url": "https://pubmed.ncbi.nlm.nih.gov/17255476" } ], "uniprot_canonical_ac": "Q0V8E7-1" }, { "start_pos": 310, "end_pos": 310, "sequence_org": "Q", "sequence_mut": "H", "comment": "Expressed at the cell surface but reduced RBP binding and vitamin A uptake activity; when associated with P-315.", "evidence": [ { "database": "UniProtKB", "id": "Q0V8E7", "url": "https://www.uniprot.org/uniprotkb/Q0V8E7" }, { "database": "PubMed", "id": "17255476", "url": "https://pubmed.ncbi.nlm.nih.gov/17255476" } ], "uniprot_canonical_ac": "Q0V8E7-1" }, { "start_pos": 315, "end_pos": 315, "sequence_org": "L", "sequence_mut": "P", "comment": "Expressed at the cell surface but reduced RBP binding and vitamin A uptake activity; when associated with H-310.", "evidence": [ { "database": "UniProtKB", "id": "Q0V8E7", "url": "https://www.uniprot.org/uniprotkb/Q0V8E7" }, { "database": "PubMed", "id": "17255476", "url": "https://pubmed.ncbi.nlm.nih.gov/17255476" } ], "uniprot_canonical_ac": "Q0V8E7-1" }, { "start_pos": 336, "end_pos": 336, "sequence_org": "Y", "sequence_mut": "H", "comment": "Not expressed at the cell surface; when associated with H-256.", "evidence": [ { "database": "UniProtKB", "id": "Q0V8E7", "url": "https://www.uniprot.org/uniprotkb/Q0V8E7" }, { "database": "PubMed", "id": "17255476", "url": "https://pubmed.ncbi.nlm.nih.gov/17255476" } ], "uniprot_canonical_ac": "Q0V8E7-1" } ], "record_id": "pubmed.17255476", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 24 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Human retinol dehydrogenase 13 (RDH13) is a mitochondrial short-chain dehydrogenase/reductase with a retinaldehyde reductase activity.", "journal": "The FEBS journal", "date": "2008", "authors": "Belyaeva OV, Korkina OV, Stetsenko AV, Kedishvili NY", "reference": { "type": "PubMed", "id": "18039331", "url": "https://pubmed.ncbi.nlm.nih.gov/18039331" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q92781-1", "protein_name": "Retinol dehydrogenase 5", "gene_name": "RDH5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NBN7-1", "protein_name": "Retinol dehydrogenase 13", "gene_name": "RDH13", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75452-1", "protein_name": "Retinol dehydrogenase 16", "gene_name": "RDH16", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N3Y7-1", "protein_name": "Epidermal retinol dehydrogenase 2", "gene_name": "SDR16C5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HBH5-1", "protein_name": "Retinol dehydrogenase 14", "gene_name": "RDH14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2A2-1", "protein_name": "2-aminomuconic semialdehyde dehydrogenase", "gene_name": "ALDH8A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42330-1", "protein_name": "Aldo-keto reductase family 1 member C3", "gene_name": "AKR1C3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75911-1", "protein_name": "Short-chain dehydrogenase/reductase 3", "gene_name": "DHRS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BPW9-1", "protein_name": "Dehydrogenase/reductase SDR family member 9", "gene_name": "DHRS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6V0L0-1", "protein_name": "Cytochrome P450 26C1", "gene_name": "CYP26C1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TC12-1", "protein_name": "Retinol dehydrogenase 11", "gene_name": "RDH11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IZV5-1", "protein_name": "Retinol dehydrogenase 10", "gene_name": "RDH10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NR63-1", "protein_name": "Cytochrome P450 26B1", "gene_name": "CYP26B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94788-1", "protein_name": "Retinal dehydrogenase 2", "gene_name": "ALDH1A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47895-1", "protein_name": "Retinaldehyde dehydrogenase 3", "gene_name": "ALDH1A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00326-1", "protein_name": "Alcohol dehydrogenase 1C", "gene_name": "ADH1C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07327-1", "protein_name": "Alcohol dehydrogenase 1A", "gene_name": "ADH1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43174-1", "protein_name": "Cytochrome P450 26A1", "gene_name": "CYP26A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29762-1", "protein_name": "Cellular retinoic acid-binding protein 1", "gene_name": "CRABP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTZ2-1", "protein_name": "Dehydrogenase/reductase SDR family member 4", "gene_name": "DHRS4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08319-1", "protein_name": "All-trans-retinol dehydrogenase [NAD(+)] ADH4", "gene_name": "ADH4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00352-1", "protein_name": "Aldehyde dehydrogenase 1A1", "gene_name": "ALDH1A1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q92781", "url": "https://www.uniprot.org/uniprotkb/Q92781" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.18039331", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 22 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Retinoic acid synthesis and signaling during early organogenesis.", "journal": "Cell", "date": "2008", "authors": "Duester G", "reference": { "type": "PubMed", "id": "18805086", "url": "https://pubmed.ncbi.nlm.nih.gov/18805086" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q92781-1", "protein_name": "Retinol dehydrogenase 5", "gene_name": "RDH5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NBN7-1", "protein_name": "Retinol dehydrogenase 13", "gene_name": "RDH13", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75452-1", "protein_name": "Retinol dehydrogenase 16", "gene_name": "RDH16", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N3Y7-1", "protein_name": "Epidermal retinol dehydrogenase 2", "gene_name": "SDR16C5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HBH5-1", "protein_name": "Retinol dehydrogenase 14", "gene_name": "RDH14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2A2-1", "protein_name": "2-aminomuconic semialdehyde dehydrogenase", "gene_name": "ALDH8A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42330-1", "protein_name": "Aldo-keto reductase family 1 member C3", "gene_name": "AKR1C3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75911-1", "protein_name": "Short-chain dehydrogenase/reductase 3", "gene_name": "DHRS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BPW9-1", "protein_name": "Dehydrogenase/reductase SDR family member 9", "gene_name": "DHRS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6V0L0-1", "protein_name": "Cytochrome P450 26C1", "gene_name": "CYP26C1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TC12-1", "protein_name": "Retinol dehydrogenase 11", "gene_name": "RDH11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IZV5-1", "protein_name": "Retinol dehydrogenase 10", "gene_name": "RDH10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NR63-1", "protein_name": "Cytochrome P450 26B1", "gene_name": "CYP26B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94788-1", "protein_name": "Retinal dehydrogenase 2", "gene_name": "ALDH1A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47895-1", "protein_name": "Retinaldehyde dehydrogenase 3", "gene_name": "ALDH1A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00326-1", "protein_name": "Alcohol dehydrogenase 1C", "gene_name": "ADH1C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07327-1", "protein_name": "Alcohol dehydrogenase 1A", "gene_name": "ADH1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43174-1", "protein_name": "Cytochrome P450 26A1", "gene_name": "CYP26A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29762-1", "protein_name": "Cellular retinoic acid-binding protein 1", "gene_name": "CRABP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTZ2-1", "protein_name": "Dehydrogenase/reductase SDR family member 4", "gene_name": "DHRS4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08319-1", "protein_name": "All-trans-retinol dehydrogenase [NAD(+)] ADH4", "gene_name": "ADH4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00352-1", "protein_name": "Aldehyde dehydrogenase 1A1", "gene_name": "ALDH1A1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q92781", "url": "https://www.uniprot.org/uniprotkb/Q92781" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.18805086", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 22 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Cloning and characterization of the human ADH4 gene.", "journal": "Gene", "date": "1991", "authors": "von Bahr-Lindstrom H, Jornvall H, Hoog JO", "reference": { "type": "PubMed", "id": "1889753", "url": "https://pubmed.ncbi.nlm.nih.gov/1889753" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q92781-1", "protein_name": "Retinol dehydrogenase 5", "gene_name": "RDH5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NBN7-1", "protein_name": "Retinol dehydrogenase 13", "gene_name": "RDH13", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75452-1", "protein_name": "Retinol dehydrogenase 16", "gene_name": "RDH16", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N3Y7-1", "protein_name": "Epidermal retinol dehydrogenase 2", "gene_name": "SDR16C5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HBH5-1", "protein_name": "Retinol dehydrogenase 14", "gene_name": "RDH14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2A2-1", "protein_name": "2-aminomuconic semialdehyde dehydrogenase", "gene_name": "ALDH8A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42330-1", "protein_name": "Aldo-keto reductase family 1 member C3", "gene_name": "AKR1C3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75911-1", "protein_name": "Short-chain dehydrogenase/reductase 3", "gene_name": "DHRS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BPW9-1", "protein_name": "Dehydrogenase/reductase SDR family member 9", "gene_name": "DHRS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6V0L0-1", "protein_name": "Cytochrome P450 26C1", "gene_name": "CYP26C1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TC12-1", "protein_name": "Retinol dehydrogenase 11", "gene_name": "RDH11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IZV5-1", "protein_name": "Retinol dehydrogenase 10", "gene_name": "RDH10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NR63-1", "protein_name": "Cytochrome P450 26B1", "gene_name": "CYP26B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94788-1", "protein_name": "Retinal dehydrogenase 2", "gene_name": "ALDH1A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47895-1", "protein_name": "Retinaldehyde dehydrogenase 3", "gene_name": "ALDH1A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00326-1", "protein_name": "Alcohol dehydrogenase 1C", "gene_name": "ADH1C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07327-1", "protein_name": "Alcohol dehydrogenase 1A", "gene_name": "ADH1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43174-1", "protein_name": "Cytochrome P450 26A1", "gene_name": "CYP26A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29762-1", "protein_name": "Cellular retinoic acid-binding protein 1", "gene_name": "CRABP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTZ2-1", "protein_name": "Dehydrogenase/reductase SDR family member 4", "gene_name": "DHRS4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08319-1", "protein_name": "All-trans-retinol dehydrogenase [NAD(+)] ADH4", "gene_name": "ADH4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00352-1", "protein_name": "Aldehyde dehydrogenase 1A1", "gene_name": "ALDH1A1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q92781", "url": "https://www.uniprot.org/uniprotkb/Q92781" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.1889753", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 22 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The SDR (short-chain dehydrogenase/reductase and related enzymes) nomenclature initiative.", "journal": "Chem. Biol. Interact.", "date": "2009", "authors": "Persson B, Kallberg Y, Bray JE, Bruford E, Dellaporta SL, Favia AD, Duarte RG, Jornvall H, Kavanagh KL, Kedishvili N, Kisiela M, Maser E, Mindnich R, Orchard S, Penning TM, Thornton JM, Adamski J, Oppermann U", "reference": { "type": "PubMed", "id": "19027726", "url": "https://pubmed.ncbi.nlm.nih.gov/19027726" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q92781-1", "protein_name": "Retinol dehydrogenase 5", "gene_name": "RDH5", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75452-1", "protein_name": "Retinol dehydrogenase 16", "gene_name": "RDH16", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13268-1", "protein_name": "Dehydrogenase/reductase SDR family member 2, mitochondrial", "gene_name": "DHRS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "A0PJE2-1", "protein_name": "Dehydrogenase/reductase SDR family member 12", "gene_name": "DHRS12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6UWP2-1", "protein_name": "Dehydrogenase/reductase SDR family member 11", "gene_name": "DHRS11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BPW9-1", "protein_name": "Dehydrogenase/reductase SDR family member 9", "gene_name": "DHRS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9ZW18-1", "protein_name": "Senescence-associated protein 13", "gene_name": "SAG13", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LHT0-1", "protein_name": "Tropinone reductase homolog At5g06060", "gene_name": "K16F4.2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q6UX07-1", "protein_name": "Dehydrogenase/reductase SDR family member 13", "gene_name": "DHRS13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9ZW03-1", "protein_name": "Tropinone reductase homolog At2g29150", "gene_name": "F16P2.47", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9ZW19-1", "protein_name": "Tropinone reductase homolog At2g29360", "gene_name": "SDR", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q42182-1", "protein_name": "Tropinone reductase homolog At2g29300", "gene_name": "F16P2.32; F16P2_32", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "A6NKP2-1", "protein_name": "Putative short-chain dehydrogenase/reductase family 42E member 2", "gene_name": "SDR42E2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y394-1", "protein_name": "Dehydrogenase/reductase SDR family member 7", "gene_name": "DHRS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96LJ7-1", "protein_name": "Dehydrogenase/reductase SDR family member 1", "gene_name": "DHRS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9ZW16-1", "protein_name": "Tropinone reductase homolog At2g29330", "gene_name": "TRI", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8RX32-1", "protein_name": "Tropinone reductase homolog At1g07450", "gene_name": "F22G5.20", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4IKM1-1", "protein_name": "Tropinone reductase homolog At2g29340", "gene_name": "F16P2.28", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P0DKI3-1", "protein_name": "Tropinone reductase homolog At1g07440", "gene_name": "F22G5.16; F22G5.20; F22G5.39; F22G5_39", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O49332-1", "protein_name": "Tropinone reductase homolog At2g30670", "gene_name": "T11J7.6", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P0CG22-1", "protein_name": "Putative dehydrogenase/reductase SDR family member 4-like 1", "gene_name": "DHRS4L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NEX9-1", "protein_name": "Short-chain dehydrogenase/reductase family 9C member 7", "gene_name": "SDR9C7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUS8-1", "protein_name": "Short-chain dehydrogenase/reductase family 42E member 1", "gene_name": "SDR42E1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NRG7-2", "protein_name": "Epimerase family protein SDR39U1", "gene_name": "SDR39U1", "tax_name": "Human" }, { "uniprot_canonical_ac": "A6NNS2-1", "protein_name": "Dehydrogenase/reductase SDR family member 7C", "gene_name": "DHRS7C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTZ2-1", "protein_name": "Dehydrogenase/reductase SDR family member 4", "gene_name": "DHRS4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6PKH6-1", "protein_name": "Dehydrogenase/reductase SDR family member 4-like 2", "gene_name": "DHRS4L2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6IAN0-1", "protein_name": "Peroxisomal reductase activating PPAR-gamma", "gene_name": "DHRS7B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9ZW15-1", "protein_name": "Tropinone reductase homolog At2g29320", "gene_name": "F16P2.30; F16P2_30", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9ZW14-1", "protein_name": "Tropinone reductase homolog At2g29310", "gene_name": "F16P2.31; F16P2_31", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9ZW04-1", "protein_name": "Tropinone reductase homolog At2g29170", "gene_name": "F16P2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9ZW12-1", "protein_name": "Tropinone reductase homolog At2g29260, chloroplastic", "gene_name": "F16P2.36", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9ZW13-1", "protein_name": "Tropinone reductase homolog At2g29290", "gene_name": "F16P2.33", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9ZW20-1", "protein_name": "Tropinone reductase homolog At2g29370", "gene_name": "F16P2.25", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q92781", "url": "https://www.uniprot.org/uniprotkb/Q92781" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.19027726", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 34 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Identification of a novel palmitylation site essential for membrane association and isomerohydrolase activity of RPE65.", "journal": "The Journal of biological chemistry", "date": "2009", "authors": "Takahashi Y, Moiseyev G, Ablonczy Z, Chen Y, Crouch RK, Ma JX", "reference": { "type": "PubMed", "id": "19049981", "url": "https://pubmed.ncbi.nlm.nih.gov/19049981" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q92781-1", "protein_name": "Retinol dehydrogenase 5", "gene_name": "RDH5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NYR8-1", "protein_name": "Retinol dehydrogenase 8", "gene_name": "RDH8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75452-1", "protein_name": "Retinol dehydrogenase 16", "gene_name": "RDH16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10745-1", "protein_name": "Retinol-binding protein 3", "gene_name": "RBP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02753-1", "protein_name": "Retinol-binding protein 4", "gene_name": "RBP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12271-1", "protein_name": "Retinaldehyde-binding protein 1", "gene_name": "RLBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q28175-1", "protein_name": "Retinoid isomerohydrolase", "gene_name": "RPE65", "tax_name": "Bovine" }, { "uniprot_canonical_ac": "Q9BPW9-1", "protein_name": "Dehydrogenase/reductase SDR family member 9", "gene_name": "DHRS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95237-1", "protein_name": "Lecithin retinol acyltransferase", "gene_name": "LRAT", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08100-1", "protein_name": "Rhodopsin", "gene_name": "RHO", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09455-1", "protein_name": "Retinol-binding protein 1", "gene_name": "RBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BX79-1", "protein_name": "Receptor for retinol uptake STRA6", "gene_name": "STRA6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TC12-1", "protein_name": "Retinol dehydrogenase 11", "gene_name": "RDH11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IZV5-1", "protein_name": "Retinol dehydrogenase 10", "gene_name": "RDH10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16518-1", "protein_name": "Retinoid isomerohydrolase", "gene_name": "RPE65", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02766-1", "protein_name": "Transthyretin", "gene_name": "TTR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZWL3-1", "protein_name": "Cytochrome P450 4V2", "gene_name": "CYP4V2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14061-1", "protein_name": "17-beta-hydroxysteroid dehydrogenase type 1", "gene_name": "HSD17B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NEX9-1", "protein_name": "Short-chain dehydrogenase/reductase family 9C member 7", "gene_name": "SDR9C7", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14756-1", "protein_name": "17-beta-hydroxysteroid dehydrogenase type 6", "gene_name": "HSD17B6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13402-1", "protein_name": "Unconventional myosin-VIIa", "gene_name": "MYO7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96NR8-1", "protein_name": "Retinol dehydrogenase 12", "gene_name": "RDH12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78363-1", "protein_name": "Retinal-specific phospholipid-transporting ATPase ABCA4", "gene_name": "ABCA4", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q92781", "url": "https://www.uniprot.org/uniprotkb/Q92781" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 106, "end_pos": 106, "sequence_org": "C", "sequence_mut": "A", "comment": "No loss of enzymatic activity. No effect on palmitoylation. No loss of membrane association.", "evidence": [ { "database": "UniProtKB", "id": "Q16518", "url": "https://www.uniprot.org/uniprotkb/Q16518" }, { "database": "PubMed", "id": "19049981", "url": "https://pubmed.ncbi.nlm.nih.gov/19049981" } ], "uniprot_canonical_ac": "Q16518-1" }, { "start_pos": 112, "end_pos": 112, "sequence_org": "C", "sequence_mut": "A", "comment": "Loss of enzymatic activity. No palmitoylation. Loss of membrane association.", "evidence": [ { "database": "UniProtKB", "id": "Q16518", "url": "https://www.uniprot.org/uniprotkb/Q16518" }, { "database": "PubMed", "id": "19049981", "url": "https://pubmed.ncbi.nlm.nih.gov/19049981" } ], "uniprot_canonical_ac": "Q16518-1" } ], "phosphorylation": [ { "start_pos": 101, "end_pos": 101, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q16518", "url": "https://www.uniprot.org/uniprotkb/Q16518" }, { "database": "PubMed", "id": "19049981", "url": "https://pubmed.ncbi.nlm.nih.gov/19049981" }, { "database": "iPTMnet", "id": "Q16518", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q16518" } ], "site_lbl": "Thr101", "uniprot_canonical_ac": "Q16518-1" }, { "start_pos": 105, "end_pos": 105, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q16518", "url": "https://www.uniprot.org/uniprotkb/Q16518" }, { "database": "PubMed", "id": "19049981", "url": "https://pubmed.ncbi.nlm.nih.gov/19049981" }, { "database": "iPTMnet", "id": "Q16518", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q16518" } ], "site_lbl": "Thr105", "uniprot_canonical_ac": "Q16518-1" }, { "start_pos": 117, "end_pos": 117, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q16518", "url": "https://www.uniprot.org/uniprotkb/Q16518" }, { "database": "PubMed", "id": "19049981", "url": "https://pubmed.ncbi.nlm.nih.gov/19049981" }, { "database": "iPTMnet", "id": "Q16518", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q16518" } ], "site_lbl": "Ser117", "uniprot_canonical_ac": "Q16518-1" } ], "record_id": "pubmed.19049981", "abstract": "", "glycosylation": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 23 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 3 }, { "field": "total_sites", "count": 3 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The first step in vision: femtosecond isomerization of rhodopsin.", "journal": "Science (New York, N.Y.)", "date": "1991", "authors": "Schoenlein RW, Peteanu LA, Mathies RA, Shank CV", "reference": { "type": "PubMed", "id": "1925597", "url": "https://pubmed.ncbi.nlm.nih.gov/1925597" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q92781-1", "protein_name": "Retinol dehydrogenase 5", "gene_name": "RDH5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NYR8-1", "protein_name": "Retinol dehydrogenase 8", "gene_name": "RDH8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75452-1", "protein_name": "Retinol dehydrogenase 16", "gene_name": "RDH16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10745-1", "protein_name": "Retinol-binding protein 3", "gene_name": "RBP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02753-1", "protein_name": "Retinol-binding protein 4", "gene_name": "RBP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12271-1", "protein_name": "Retinaldehyde-binding protein 1", "gene_name": "RLBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75911-1", "protein_name": "Short-chain dehydrogenase/reductase 3", "gene_name": "DHRS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BPW9-1", "protein_name": "Dehydrogenase/reductase SDR family member 9", "gene_name": "DHRS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95237-1", "protein_name": "Lecithin retinol acyltransferase", "gene_name": "LRAT", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04000-1", "protein_name": "Long-wave-sensitive opsin 1", "gene_name": "OPN1LW", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04001-1", "protein_name": "Medium-wave-sensitive opsin 1", "gene_name": "OPN1MW2; OPN1MW", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08100-1", "protein_name": "Rhodopsin", "gene_name": "RHO", "tax_name": "Human" }, { "uniprot_canonical_ac": "P03999-1", "protein_name": "Short-wave-sensitive opsin 1", "gene_name": "OPN1SW", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09455-1", "protein_name": "Retinol-binding protein 1", "gene_name": "RBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BX79-1", "protein_name": "Receptor for retinol uptake STRA6", "gene_name": "STRA6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TC12-1", "protein_name": "Retinol dehydrogenase 11", "gene_name": "RDH11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IZV5-1", "protein_name": "Retinol dehydrogenase 10", "gene_name": "RDH10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16518-1", "protein_name": "Retinoid isomerohydrolase", "gene_name": "RPE65", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02766-1", "protein_name": "Transthyretin", "gene_name": "TTR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZWL3-1", "protein_name": "Cytochrome P450 4V2", "gene_name": "CYP4V2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14061-1", "protein_name": "17-beta-hydroxysteroid dehydrogenase type 1", "gene_name": "HSD17B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NEX9-1", "protein_name": "Short-chain dehydrogenase/reductase family 9C member 7", "gene_name": "SDR9C7", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14756-1", "protein_name": "17-beta-hydroxysteroid dehydrogenase type 6", "gene_name": "HSD17B6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13402-1", "protein_name": "Unconventional myosin-VIIa", "gene_name": "MYO7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96NR8-1", "protein_name": "Retinol dehydrogenase 12", "gene_name": "RDH12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6E213-1", "protein_name": "Acyl-CoA wax alcohol acyltransferase 2", "gene_name": "AWAT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78363-1", "protein_name": "Retinal-specific phospholipid-transporting ATPase ABCA4", "gene_name": "ABCA4", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q92781", "url": "https://www.uniprot.org/uniprotkb/Q92781" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.1925597", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 27 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Phenotypic spectrum of STRA6 mutations: from Matthew-Wood syndrome to non-lethal anophthalmia.", "journal": "Human mutation", "date": "2009", "authors": "Chassaing N, Golzio C, Odent S, Lequeux L, Vigouroux A, Martinovic-Bouriel J, Tiziano FD, Masini L, Piro F, Maragliano G, Delezoide AL, Attie-Bitach T, Manouvrier-Hanu S, Etchevers HC, Calvas P", "reference": { "type": "PubMed", "id": "19309693", "url": "https://pubmed.ncbi.nlm.nih.gov/19309693" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q92781-1", "protein_name": "Retinol dehydrogenase 5", "gene_name": "RDH5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NYR8-1", "protein_name": "Retinol dehydrogenase 8", "gene_name": "RDH8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75452-1", "protein_name": "Retinol dehydrogenase 16", "gene_name": "RDH16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10745-1", "protein_name": "Retinol-binding protein 3", "gene_name": "RBP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02753-1", "protein_name": "Retinol-binding protein 4", "gene_name": "RBP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12271-1", "protein_name": "Retinaldehyde-binding protein 1", "gene_name": "RLBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BPW9-1", "protein_name": "Dehydrogenase/reductase SDR family member 9", "gene_name": "DHRS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95237-1", "protein_name": "Lecithin retinol acyltransferase", "gene_name": "LRAT", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08100-1", "protein_name": "Rhodopsin", "gene_name": "RHO", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09455-1", "protein_name": "Retinol-binding protein 1", "gene_name": "RBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BX79-1", "protein_name": "Receptor for retinol uptake STRA6", "gene_name": "STRA6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TC12-1", "protein_name": "Retinol dehydrogenase 11", "gene_name": "RDH11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IZV5-1", "protein_name": "Retinol dehydrogenase 10", "gene_name": "RDH10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16518-1", "protein_name": "Retinoid isomerohydrolase", "gene_name": "RPE65", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02766-1", "protein_name": "Transthyretin", "gene_name": "TTR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZWL3-1", "protein_name": "Cytochrome P450 4V2", "gene_name": "CYP4V2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14061-1", "protein_name": "17-beta-hydroxysteroid dehydrogenase type 1", "gene_name": "HSD17B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NEX9-1", "protein_name": "Short-chain dehydrogenase/reductase family 9C member 7", "gene_name": "SDR9C7", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14756-1", "protein_name": "17-beta-hydroxysteroid dehydrogenase type 6", "gene_name": "HSD17B6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13402-1", "protein_name": "Unconventional myosin-VIIa", "gene_name": "MYO7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96NR8-1", "protein_name": "Retinol dehydrogenase 12", "gene_name": "RDH12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78363-1", "protein_name": "Retinal-specific phospholipid-transporting ATPase ABCA4", "gene_name": "ABCA4", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q92781", "url": "https://www.uniprot.org/uniprotkb/Q92781" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.19309693", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 22 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Structure and activation of the visual pigment rhodopsin.", "journal": "Annual review of biophysics", "date": "2010", "authors": "Smith SO", "reference": { "type": "PubMed", "id": "20192770", "url": "https://pubmed.ncbi.nlm.nih.gov/20192770" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q92781-1", "protein_name": "Retinol dehydrogenase 5", "gene_name": "RDH5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NYR8-1", "protein_name": "Retinol dehydrogenase 8", "gene_name": "RDH8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75452-1", "protein_name": "Retinol dehydrogenase 16", "gene_name": "RDH16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10745-1", "protein_name": "Retinol-binding protein 3", "gene_name": "RBP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02753-1", "protein_name": "Retinol-binding protein 4", "gene_name": "RBP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12271-1", "protein_name": "Retinaldehyde-binding protein 1", "gene_name": "RLBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BPW9-1", "protein_name": "Dehydrogenase/reductase SDR family member 9", "gene_name": "DHRS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95237-1", "protein_name": "Lecithin retinol acyltransferase", "gene_name": "LRAT", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08100-1", "protein_name": "Rhodopsin", "gene_name": "RHO", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09455-1", "protein_name": "Retinol-binding protein 1", "gene_name": "RBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BX79-1", "protein_name": "Receptor for retinol uptake STRA6", "gene_name": "STRA6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TC12-1", "protein_name": "Retinol dehydrogenase 11", "gene_name": "RDH11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IZV5-1", "protein_name": "Retinol dehydrogenase 10", "gene_name": "RDH10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16518-1", "protein_name": "Retinoid isomerohydrolase", "gene_name": "RPE65", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02766-1", "protein_name": "Transthyretin", "gene_name": "TTR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZWL3-1", "protein_name": "Cytochrome P450 4V2", "gene_name": "CYP4V2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14061-1", "protein_name": "17-beta-hydroxysteroid dehydrogenase type 1", "gene_name": "HSD17B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NEX9-1", "protein_name": "Short-chain dehydrogenase/reductase family 9C member 7", "gene_name": "SDR9C7", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14756-1", "protein_name": "17-beta-hydroxysteroid dehydrogenase type 6", "gene_name": "HSD17B6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13402-1", "protein_name": "Unconventional myosin-VIIa", "gene_name": "MYO7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96NR8-1", "protein_name": "Retinol dehydrogenase 12", "gene_name": "RDH12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78363-1", "protein_name": "Retinal-specific phospholipid-transporting ATPase ABCA4", "gene_name": "ABCA4", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q92781", "url": "https://www.uniprot.org/uniprotkb/Q92781" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.20192770", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 22 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Retinol dehydrogenases (RDHs) in the visual cycle.", "journal": "Experimental eye research", "date": "2010", "authors": "Parker RO, Crouch RK", "reference": { "type": "PubMed", "id": "20801113", "url": "https://pubmed.ncbi.nlm.nih.gov/20801113" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q92781-1", "protein_name": "Retinol dehydrogenase 5", "gene_name": "RDH5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NBN7-1", "protein_name": "Retinol dehydrogenase 13", "gene_name": "RDH13", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75452-1", "protein_name": "Retinol dehydrogenase 16", "gene_name": "RDH16", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N3Y7-1", "protein_name": "Epidermal retinol dehydrogenase 2", "gene_name": "SDR16C5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HBH5-1", "protein_name": "Retinol dehydrogenase 14", "gene_name": "RDH14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2A2-1", "protein_name": "2-aminomuconic semialdehyde dehydrogenase", "gene_name": "ALDH8A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42330-1", "protein_name": "Aldo-keto reductase family 1 member C3", "gene_name": "AKR1C3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75911-1", "protein_name": "Short-chain dehydrogenase/reductase 3", "gene_name": "DHRS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BPW9-1", "protein_name": "Dehydrogenase/reductase SDR family member 9", "gene_name": "DHRS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6V0L0-1", "protein_name": "Cytochrome P450 26C1", "gene_name": "CYP26C1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TC12-1", "protein_name": "Retinol dehydrogenase 11", "gene_name": "RDH11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IZV5-1", "protein_name": "Retinol dehydrogenase 10", "gene_name": "RDH10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NR63-1", "protein_name": "Cytochrome P450 26B1", "gene_name": "CYP26B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94788-1", "protein_name": "Retinal dehydrogenase 2", "gene_name": "ALDH1A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47895-1", "protein_name": "Retinaldehyde dehydrogenase 3", "gene_name": "ALDH1A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00326-1", "protein_name": "Alcohol dehydrogenase 1C", "gene_name": "ADH1C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07327-1", "protein_name": "Alcohol dehydrogenase 1A", "gene_name": "ADH1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43174-1", "protein_name": "Cytochrome P450 26A1", "gene_name": "CYP26A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29762-1", "protein_name": "Cellular retinoic acid-binding protein 1", "gene_name": "CRABP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTZ2-1", "protein_name": "Dehydrogenase/reductase SDR family member 4", "gene_name": "DHRS4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08319-1", "protein_name": "All-trans-retinol dehydrogenase [NAD(+)] ADH4", "gene_name": "ADH4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00352-1", "protein_name": "Aldehyde dehydrogenase 1A1", "gene_name": "ALDH1A1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q92781", "url": "https://www.uniprot.org/uniprotkb/Q92781" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.20801113", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 22 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The Usher 1B protein, MYO7A, is required for normal localization and function of the visual retinoid cycle enzyme, RPE65.", "journal": "Human molecular genetics", "date": "2011", "authors": "Lopes VS, Gibbs D, Libby RT, Aleman TS, Welch DL, Lillo C, Jacobson SG, Radu RA, Steel KP, Williams DS", "reference": { "type": "PubMed", "id": "21493626", "url": "https://pubmed.ncbi.nlm.nih.gov/21493626" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q92781-1", "protein_name": "Retinol dehydrogenase 5", "gene_name": "RDH5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NYR8-1", "protein_name": "Retinol dehydrogenase 8", "gene_name": "RDH8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75452-1", "protein_name": "Retinol dehydrogenase 16", "gene_name": "RDH16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10745-1", "protein_name": "Retinol-binding protein 3", "gene_name": "RBP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02753-1", "protein_name": "Retinol-binding protein 4", "gene_name": "RBP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12271-1", "protein_name": "Retinaldehyde-binding protein 1", "gene_name": "RLBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BPW9-1", "protein_name": "Dehydrogenase/reductase SDR family member 9", "gene_name": "DHRS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95237-1", "protein_name": "Lecithin retinol acyltransferase", "gene_name": "LRAT", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08100-1", "protein_name": "Rhodopsin", "gene_name": "RHO", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09455-1", "protein_name": "Retinol-binding protein 1", "gene_name": "RBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BX79-1", "protein_name": "Receptor for retinol uptake STRA6", "gene_name": "STRA6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TC12-1", "protein_name": "Retinol dehydrogenase 11", "gene_name": "RDH11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IZV5-1", "protein_name": "Retinol dehydrogenase 10", "gene_name": "RDH10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16518-1", "protein_name": "Retinoid isomerohydrolase", "gene_name": "RPE65", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02766-1", "protein_name": "Transthyretin", "gene_name": "TTR", "tax_name": "Human" }, { "uniprot_canonical_ac": "P97479-1", "protein_name": "Unconventional myosin-VIIa", "gene_name": "Myo7a", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q6ZWL3-1", "protein_name": "Cytochrome P450 4V2", "gene_name": "CYP4V2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14061-1", "protein_name": "17-beta-hydroxysteroid dehydrogenase type 1", "gene_name": "HSD17B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NEX9-1", "protein_name": "Short-chain dehydrogenase/reductase family 9C member 7", "gene_name": "SDR9C7", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14756-1", "protein_name": "17-beta-hydroxysteroid dehydrogenase type 6", "gene_name": "HSD17B6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13402-1", "protein_name": "Unconventional myosin-VIIa", "gene_name": "MYO7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96NR8-1", "protein_name": "Retinol dehydrogenase 12", "gene_name": "RDH12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78363-1", "protein_name": "Retinal-specific phospholipid-transporting ATPase ABCA4", "gene_name": "ABCA4", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q92781", "url": "https://www.uniprot.org/uniprotkb/Q92781" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.21493626", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 23 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Cytochrome P450s in the regulation of cellular retinoic acid metabolism.", "journal": "Annual review of nutrition", "date": "2011", "authors": "Ross AC, Zolfaghari R", "reference": { "type": "PubMed", "id": "21529158", "url": "https://pubmed.ncbi.nlm.nih.gov/21529158" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q92781-1", "protein_name": "Retinol dehydrogenase 5", "gene_name": "RDH5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NBN7-1", "protein_name": "Retinol dehydrogenase 13", "gene_name": "RDH13", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75452-1", "protein_name": "Retinol dehydrogenase 16", "gene_name": "RDH16", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N3Y7-1", "protein_name": "Epidermal retinol dehydrogenase 2", "gene_name": "SDR16C5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HBH5-1", "protein_name": "Retinol dehydrogenase 14", "gene_name": "RDH14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2A2-1", "protein_name": "2-aminomuconic semialdehyde dehydrogenase", "gene_name": "ALDH8A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42330-1", "protein_name": "Aldo-keto reductase family 1 member C3", "gene_name": "AKR1C3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75911-1", "protein_name": "Short-chain dehydrogenase/reductase 3", "gene_name": "DHRS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BPW9-1", "protein_name": "Dehydrogenase/reductase SDR family member 9", "gene_name": "DHRS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6V0L0-1", "protein_name": "Cytochrome P450 26C1", "gene_name": "CYP26C1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TC12-1", "protein_name": "Retinol dehydrogenase 11", "gene_name": "RDH11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IZV5-1", "protein_name": "Retinol dehydrogenase 10", "gene_name": "RDH10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NR63-1", "protein_name": "Cytochrome P450 26B1", "gene_name": "CYP26B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94788-1", "protein_name": "Retinal dehydrogenase 2", "gene_name": "ALDH1A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47895-1", "protein_name": "Retinaldehyde dehydrogenase 3", "gene_name": "ALDH1A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00326-1", "protein_name": "Alcohol dehydrogenase 1C", "gene_name": "ADH1C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07327-1", "protein_name": "Alcohol dehydrogenase 1A", "gene_name": "ADH1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43174-1", "protein_name": "Cytochrome P450 26A1", "gene_name": "CYP26A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29762-1", "protein_name": "Cellular retinoic acid-binding protein 1", "gene_name": "CRABP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTZ2-1", "protein_name": "Dehydrogenase/reductase SDR family member 4", "gene_name": "DHRS4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08319-1", "protein_name": "All-trans-retinol dehydrogenase [NAD(+)] ADH4", "gene_name": "ADH4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00352-1", "protein_name": "Aldehyde dehydrogenase 1A1", "gene_name": "ALDH1A1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q92781", "url": "https://www.uniprot.org/uniprotkb/Q92781" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.21529158", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 22 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Physiological insights into all-trans-retinoic acid biosynthesis.", "journal": "Biochimica et biophysica acta", "date": "2012", "authors": "Napoli JL", "reference": { "type": "PubMed", "id": "21621639", "url": "https://pubmed.ncbi.nlm.nih.gov/21621639" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q92781-1", "protein_name": "Retinol dehydrogenase 5", "gene_name": "RDH5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NBN7-1", "protein_name": "Retinol dehydrogenase 13", "gene_name": "RDH13", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75452-1", "protein_name": "Retinol dehydrogenase 16", "gene_name": "RDH16", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N3Y7-1", "protein_name": "Epidermal retinol dehydrogenase 2", "gene_name": "SDR16C5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HBH5-1", "protein_name": "Retinol dehydrogenase 14", "gene_name": "RDH14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2A2-1", "protein_name": "2-aminomuconic semialdehyde dehydrogenase", "gene_name": "ALDH8A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42330-1", "protein_name": "Aldo-keto reductase family 1 member C3", "gene_name": "AKR1C3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75911-1", "protein_name": "Short-chain dehydrogenase/reductase 3", "gene_name": "DHRS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BPW9-1", "protein_name": "Dehydrogenase/reductase SDR family member 9", "gene_name": "DHRS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6V0L0-1", "protein_name": "Cytochrome P450 26C1", "gene_name": "CYP26C1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TC12-1", "protein_name": "Retinol dehydrogenase 11", "gene_name": "RDH11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IZV5-1", "protein_name": "Retinol dehydrogenase 10", "gene_name": "RDH10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NR63-1", "protein_name": "Cytochrome P450 26B1", "gene_name": "CYP26B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94788-1", "protein_name": "Retinal dehydrogenase 2", "gene_name": "ALDH1A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47895-1", "protein_name": "Retinaldehyde dehydrogenase 3", "gene_name": "ALDH1A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00326-1", "protein_name": "Alcohol dehydrogenase 1C", "gene_name": "ADH1C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07327-1", "protein_name": "Alcohol dehydrogenase 1A", "gene_name": "ADH1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43174-1", "protein_name": "Cytochrome P450 26A1", "gene_name": "CYP26A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29762-1", "protein_name": "Cellular retinoic acid-binding protein 1", "gene_name": "CRABP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTZ2-1", "protein_name": "Dehydrogenase/reductase SDR family member 4", "gene_name": "DHRS4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08319-1", "protein_name": "All-trans-retinol dehydrogenase [NAD(+)] ADH4", "gene_name": "ADH4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00352-1", "protein_name": "Aldehyde dehydrogenase 1A1", "gene_name": "ALDH1A1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q92781", "url": "https://www.uniprot.org/uniprotkb/Q92781" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.21621639", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 22 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Receptor-mediated cellular uptake mechanism that couples to intracellular storage.", "journal": "ACS chemical biology", "date": "2011", "authors": "Kawaguchi R, Yu J, Ter-Stepanian M, Zhong M, Cheng G, Yuan Q, Jin M, Travis GH, Ong D, Sun H", "reference": { "type": "PubMed", "id": "21774515", "url": "https://pubmed.ncbi.nlm.nih.gov/21774515" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q92781-1", "protein_name": "Retinol dehydrogenase 5", "gene_name": "RDH5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NYR8-1", "protein_name": "Retinol dehydrogenase 8", "gene_name": "RDH8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75452-1", "protein_name": "Retinol dehydrogenase 16", "gene_name": "RDH16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10745-1", "protein_name": "Retinol-binding protein 3", "gene_name": "RBP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02753-1", "protein_name": "Retinol-binding protein 4", "gene_name": "RBP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12271-1", "protein_name": "Retinaldehyde-binding protein 1", "gene_name": "RLBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BPW9-1", "protein_name": "Dehydrogenase/reductase SDR family member 9", "gene_name": "DHRS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95237-1", "protein_name": "Lecithin retinol acyltransferase", "gene_name": "LRAT", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08100-1", "protein_name": "Rhodopsin", "gene_name": "RHO", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09455-1", "protein_name": "Retinol-binding protein 1", "gene_name": "RBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BX79-1", "protein_name": "Receptor for retinol uptake STRA6", "gene_name": "STRA6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TC12-1", "protein_name": "Retinol dehydrogenase 11", "gene_name": "RDH11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IZV5-1", "protein_name": "Retinol dehydrogenase 10", "gene_name": "RDH10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16518-1", "protein_name": "Retinoid isomerohydrolase", "gene_name": "RPE65", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02766-1", "protein_name": "Transthyretin", "gene_name": "TTR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZWL3-1", "protein_name": "Cytochrome P450 4V2", "gene_name": "CYP4V2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14061-1", "protein_name": "17-beta-hydroxysteroid dehydrogenase type 1", "gene_name": "HSD17B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NEX9-1", "protein_name": "Short-chain dehydrogenase/reductase family 9C member 7", "gene_name": "SDR9C7", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14756-1", "protein_name": "17-beta-hydroxysteroid dehydrogenase type 6", "gene_name": "HSD17B6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13402-1", "protein_name": "Unconventional myosin-VIIa", "gene_name": "MYO7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96NR8-1", "protein_name": "Retinol dehydrogenase 12", "gene_name": "RDH12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78363-1", "protein_name": "Retinal-specific phospholipid-transporting ATPase ABCA4", "gene_name": "ABCA4", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q92781", "url": "https://www.uniprot.org/uniprotkb/Q92781" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.21774515", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 22 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Craniosynostosis and multiple skeletal anomalies in humans and zebrafish result from a defect in the localized degradation of retinoic acid.", "journal": "American journal of human genetics", "date": "2011", "authors": "Laue K, Pogoda HM, Daniel PB, van Haeringen A, Alanay Y, von Ameln S, Rachwalski M, Morgan T, Gray MJ, Breuning MH, Sawyer GM, Sutherland-Smith AJ, Nikkels PG, Kubisch C, Bloch W, Wollnik B, Hammerschmidt M, Robertson SP", "reference": { "type": "PubMed", "id": "22019272", "url": "https://pubmed.ncbi.nlm.nih.gov/22019272" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q92781-1", "protein_name": "Retinol dehydrogenase 5", "gene_name": "RDH5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NBN7-1", "protein_name": "Retinol dehydrogenase 13", "gene_name": "RDH13", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75452-1", "protein_name": "Retinol dehydrogenase 16", "gene_name": "RDH16", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N3Y7-1", "protein_name": "Epidermal retinol dehydrogenase 2", "gene_name": "SDR16C5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HBH5-1", "protein_name": "Retinol dehydrogenase 14", "gene_name": "RDH14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q811W2-1", "protein_name": "Cytochrome P450 26B1", "gene_name": "Cyp26b1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9H2A2-1", "protein_name": "2-aminomuconic semialdehyde dehydrogenase", "gene_name": "ALDH8A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42330-1", "protein_name": "Aldo-keto reductase family 1 member C3", "gene_name": "AKR1C3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75911-1", "protein_name": "Short-chain dehydrogenase/reductase 3", "gene_name": "DHRS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BPW9-1", "protein_name": "Dehydrogenase/reductase SDR family member 9", "gene_name": "DHRS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6EIG3-1", "protein_name": "Cytochrome P450 26B1", "gene_name": "cyp26b1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q6V0L0-1", "protein_name": "Cytochrome P450 26C1", "gene_name": "CYP26C1", "tax_name": "Human" }, { "uniprot_canonical_ac": "F1R6K1-1", "protein_name": "Phosphate-regulating neutral endopeptidase PHEX isoform 1", "gene_name": "phex", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q8TC12-1", "protein_name": "Retinol dehydrogenase 11", "gene_name": "RDH11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IZV5-1", "protein_name": "Retinol dehydrogenase 10", "gene_name": "RDH10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NR63-1", "protein_name": "Cytochrome P450 26B1", "gene_name": "CYP26B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94788-1", "protein_name": "Retinal dehydrogenase 2", "gene_name": "ALDH1A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47895-1", "protein_name": "Retinaldehyde dehydrogenase 3", "gene_name": "ALDH1A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00326-1", "protein_name": "Alcohol dehydrogenase 1C", "gene_name": "ADH1C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07327-1", "protein_name": "Alcohol dehydrogenase 1A", "gene_name": "ADH1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43174-1", "protein_name": "Cytochrome P450 26A1", "gene_name": "CYP26A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "F1Q528-1", "protein_name": "ANKH inorganic pyrophosphate transport regulator a", "gene_name": "ankha", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "P29762-1", "protein_name": "Cellular retinoic acid-binding protein 1", "gene_name": "CRABP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTZ2-1", "protein_name": "Dehydrogenase/reductase SDR family member 4", "gene_name": "DHRS4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08319-1", "protein_name": "All-trans-retinol dehydrogenase [NAD(+)] ADH4", "gene_name": "ADH4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00352-1", "protein_name": "Aldehyde dehydrogenase 1A1", "gene_name": "ALDH1A1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q92781", "url": "https://www.uniprot.org/uniprotkb/Q92781" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.22019272", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 26 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Cross talk between signaling and vitamin A transport by the retinol-binding protein receptor STRA6.", "journal": "Molecular and cellular biology", "date": "2012", "authors": "Berry DC, O'Byrne SM, Vreeland AC, Blaner WS, Noy N", "reference": { "type": "PubMed", "id": "22665496", "url": "https://pubmed.ncbi.nlm.nih.gov/22665496" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q92781-1", "protein_name": "Retinol dehydrogenase 5", "gene_name": "RDH5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NYR8-1", "protein_name": "Retinol dehydrogenase 8", "gene_name": "RDH8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75452-1", "protein_name": "Retinol dehydrogenase 16", "gene_name": "RDH16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10745-1", "protein_name": "Retinol-binding protein 3", "gene_name": "RBP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02753-1", "protein_name": "Retinol-binding protein 4", "gene_name": "RBP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12271-1", "protein_name": "Retinaldehyde-binding protein 1", "gene_name": "RLBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BPW9-1", "protein_name": "Dehydrogenase/reductase SDR family member 9", "gene_name": "DHRS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95237-1", "protein_name": "Lecithin retinol acyltransferase", "gene_name": "LRAT", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08100-1", "protein_name": "Rhodopsin", "gene_name": "RHO", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09455-1", "protein_name": "Retinol-binding protein 1", "gene_name": "RBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BX79-1", "protein_name": "Receptor for retinol uptake STRA6", "gene_name": "STRA6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q00915-1", "protein_name": "Retinol-binding protein 1", "gene_name": "Rbp1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8TC12-1", "protein_name": "Retinol dehydrogenase 11", "gene_name": "RDH11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IZV5-1", "protein_name": "Retinol dehydrogenase 10", "gene_name": "RDH10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16518-1", "protein_name": "Retinoid isomerohydrolase", "gene_name": "RPE65", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02766-1", "protein_name": "Transthyretin", "gene_name": "TTR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZWL3-1", "protein_name": "Cytochrome P450 4V2", "gene_name": "CYP4V2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14061-1", "protein_name": "17-beta-hydroxysteroid dehydrogenase type 1", "gene_name": "HSD17B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NEX9-1", "protein_name": "Short-chain dehydrogenase/reductase family 9C member 7", "gene_name": "SDR9C7", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14756-1", "protein_name": "17-beta-hydroxysteroid dehydrogenase type 6", "gene_name": "HSD17B6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13402-1", "protein_name": "Unconventional myosin-VIIa", "gene_name": "MYO7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96NR8-1", "protein_name": "Retinol dehydrogenase 12", "gene_name": "RDH12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78363-1", "protein_name": "Retinal-specific phospholipid-transporting ATPase ABCA4", "gene_name": "ABCA4", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q92781", "url": "https://www.uniprot.org/uniprotkb/Q92781" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 255, "end_pos": 255, "sequence_org": "L", "sequence_mut": "A", "comment": "Loss of interaction with RBP1.", "evidence": [ { "database": "UniProtKB", "id": "Q9BX79", "url": "https://www.uniprot.org/uniprotkb/Q9BX79" }, { "database": "PubMed", "id": "22665496", "url": "https://pubmed.ncbi.nlm.nih.gov/22665496" } ], "uniprot_canonical_ac": "Q9BX79-1" } ], "record_id": "pubmed.22665496", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 23 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Novel mutations in RDH5 cause fundus albipunctatus in two consanguineous Pakistani families.", "journal": "Molecular vision", "date": "2012", "authors": "Ajmal M, Khan MI, Neveling K, Khan YM, Ali SH, Ahmed W, Iqbal MS, Azam M, den Hollander AI, Collin RW, Qamar R, Cremers FP", "reference": { "type": "PubMed", "id": "22736946", "url": "https://pubmed.ncbi.nlm.nih.gov/22736946" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q92781-1", "protein_name": "Retinol dehydrogenase 5", "gene_name": "RDH5", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q92781", "url": "https://www.uniprot.org/uniprotkb/Q92781" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.22736946", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Characterization and comparative structural features of the gene for human interstitial retinol-binding protein.", "journal": "The Journal of biological chemistry", "date": "1990", "authors": "Fong SL, Fong WB, Morris TA, Kedzie KM, Bridges CD", "reference": { "type": "PubMed", "id": "2303470", "url": "https://pubmed.ncbi.nlm.nih.gov/2303470" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q92781-1", "protein_name": "Retinol dehydrogenase 5", "gene_name": "RDH5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NYR8-1", "protein_name": "Retinol dehydrogenase 8", "gene_name": "RDH8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75452-1", "protein_name": "Retinol dehydrogenase 16", "gene_name": "RDH16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10745-1", "protein_name": "Retinol-binding protein 3", "gene_name": "RBP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02753-1", "protein_name": "Retinol-binding protein 4", "gene_name": "RBP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12271-1", "protein_name": "Retinaldehyde-binding protein 1", "gene_name": "RLBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75911-1", "protein_name": "Short-chain dehydrogenase/reductase 3", "gene_name": "DHRS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BPW9-1", "protein_name": "Dehydrogenase/reductase SDR family member 9", "gene_name": "DHRS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95237-1", "protein_name": "Lecithin retinol acyltransferase", "gene_name": "LRAT", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04000-1", "protein_name": "Long-wave-sensitive opsin 1", "gene_name": "OPN1LW", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04001-1", "protein_name": "Medium-wave-sensitive opsin 1", "gene_name": "OPN1MW2; OPN1MW", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08100-1", "protein_name": "Rhodopsin", "gene_name": "RHO", "tax_name": "Human" }, { "uniprot_canonical_ac": "P03999-1", "protein_name": "Short-wave-sensitive opsin 1", "gene_name": "OPN1SW", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09455-1", "protein_name": "Retinol-binding protein 1", "gene_name": "RBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BX79-1", "protein_name": "Receptor for retinol uptake STRA6", "gene_name": "STRA6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TC12-1", "protein_name": "Retinol dehydrogenase 11", "gene_name": "RDH11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IZV5-1", "protein_name": "Retinol dehydrogenase 10", "gene_name": "RDH10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16518-1", "protein_name": "Retinoid isomerohydrolase", "gene_name": "RPE65", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02766-1", "protein_name": "Transthyretin", "gene_name": "TTR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZWL3-1", "protein_name": "Cytochrome P450 4V2", "gene_name": "CYP4V2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14061-1", "protein_name": "17-beta-hydroxysteroid dehydrogenase type 1", "gene_name": "HSD17B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NEX9-1", "protein_name": "Short-chain dehydrogenase/reductase family 9C member 7", "gene_name": "SDR9C7", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14756-1", "protein_name": "17-beta-hydroxysteroid dehydrogenase type 6", "gene_name": "HSD17B6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13402-1", "protein_name": "Unconventional myosin-VIIa", "gene_name": "MYO7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96NR8-1", "protein_name": "Retinol dehydrogenase 12", "gene_name": "RDH12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6E213-1", "protein_name": "Acyl-CoA wax alcohol acyltransferase 2", "gene_name": "AWAT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78363-1", "protein_name": "Retinal-specific phospholipid-transporting ATPase ABCA4", "gene_name": "ABCA4", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q92781", "url": "https://www.uniprot.org/uniprotkb/Q92781" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.2303470", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 27 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Retinoic acid biosynthesis catalyzed by retinal dehydrogenases relies on a rate-limiting conformational transition associated with substrate recognition.", "journal": "Chemico-biological interactions", "date": "2013", "authors": "Bchini R, Vasiliou V, Branlant G, Talfournier F, Rahuel-Clermont S", "reference": { "type": "PubMed", "id": "23220587", "url": "https://pubmed.ncbi.nlm.nih.gov/23220587" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q92781-1", "protein_name": "Retinol dehydrogenase 5", "gene_name": "RDH5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NBN7-1", "protein_name": "Retinol dehydrogenase 13", "gene_name": "RDH13", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75452-1", "protein_name": "Retinol dehydrogenase 16", "gene_name": "RDH16", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N3Y7-1", "protein_name": "Epidermal retinol dehydrogenase 2", "gene_name": "SDR16C5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HBH5-1", "protein_name": "Retinol dehydrogenase 14", "gene_name": "RDH14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2A2-1", "protein_name": "2-aminomuconic semialdehyde dehydrogenase", "gene_name": "ALDH8A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42330-1", "protein_name": "Aldo-keto reductase family 1 member C3", "gene_name": "AKR1C3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75911-1", "protein_name": "Short-chain dehydrogenase/reductase 3", "gene_name": "DHRS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BPW9-1", "protein_name": "Dehydrogenase/reductase SDR family member 9", "gene_name": "DHRS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6V0L0-1", "protein_name": "Cytochrome P450 26C1", "gene_name": "CYP26C1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TC12-1", "protein_name": "Retinol dehydrogenase 11", "gene_name": "RDH11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IZV5-1", "protein_name": "Retinol dehydrogenase 10", "gene_name": "RDH10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NR63-1", "protein_name": "Cytochrome P450 26B1", "gene_name": "CYP26B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94788-1", "protein_name": "Retinal dehydrogenase 2", "gene_name": "ALDH1A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47895-1", "protein_name": "Retinaldehyde dehydrogenase 3", "gene_name": "ALDH1A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00326-1", "protein_name": "Alcohol dehydrogenase 1C", "gene_name": "ADH1C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07327-1", "protein_name": "Alcohol dehydrogenase 1A", "gene_name": "ADH1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43174-1", "protein_name": "Cytochrome P450 26A1", "gene_name": "CYP26A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29762-1", "protein_name": "Cellular retinoic acid-binding protein 1", "gene_name": "CRABP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTZ2-1", "protein_name": "Dehydrogenase/reductase SDR family member 4", "gene_name": "DHRS4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08319-1", "protein_name": "All-trans-retinol dehydrogenase [NAD(+)] ADH4", "gene_name": "ADH4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00352-1", "protein_name": "Aldehyde dehydrogenase 1A1", "gene_name": "ALDH1A1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q92781", "url": "https://www.uniprot.org/uniprotkb/Q92781" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.23220587", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 22 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "exomeSuite: Whole exome sequence variant filtering tool for rapid identification of putative disease causing SNVs/indels.", "journal": "Genomics", "date": "2014", "authors": "Maranhao B, Biswas P, Duncan JL, Branham KE, Silva GA, Naeem MA, Khan SN, Riazuddin S, Hejtmancik JF, Heckenlively JR, Riazuddin SA, Lee PL, Ayyagari R", "reference": { "type": "PubMed", "id": "24603341", "url": "https://pubmed.ncbi.nlm.nih.gov/24603341" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q92781-1", "protein_name": "Retinol dehydrogenase 5", "gene_name": "RDH5", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q92781", "url": "https://www.uniprot.org/uniprotkb/Q92781" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.24603341", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Human interstitial retinoid-binding protein. Gene structure and primary structure.", "journal": "The Journal of biological chemistry", "date": "1989", "authors": "Liou GI, Ma DP, Yang YW, Geng L, Zhu C, Baehr W", "reference": { "type": "PubMed", "id": "2542268", "url": "https://pubmed.ncbi.nlm.nih.gov/2542268" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q92781-1", "protein_name": "Retinol dehydrogenase 5", "gene_name": "RDH5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NYR8-1", "protein_name": "Retinol dehydrogenase 8", "gene_name": "RDH8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75452-1", "protein_name": "Retinol dehydrogenase 16", "gene_name": "RDH16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10745-1", "protein_name": "Retinol-binding protein 3", "gene_name": "RBP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02753-1", "protein_name": "Retinol-binding protein 4", "gene_name": "RBP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12271-1", "protein_name": "Retinaldehyde-binding protein 1", "gene_name": "RLBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75911-1", "protein_name": "Short-chain dehydrogenase/reductase 3", "gene_name": "DHRS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BPW9-1", "protein_name": "Dehydrogenase/reductase SDR family member 9", "gene_name": "DHRS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95237-1", "protein_name": "Lecithin retinol acyltransferase", "gene_name": "LRAT", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04000-1", "protein_name": "Long-wave-sensitive opsin 1", "gene_name": "OPN1LW", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04001-1", "protein_name": "Medium-wave-sensitive opsin 1", "gene_name": "OPN1MW2; OPN1MW", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08100-1", "protein_name": "Rhodopsin", "gene_name": "RHO", "tax_name": "Human" }, { "uniprot_canonical_ac": "P03999-1", "protein_name": "Short-wave-sensitive opsin 1", "gene_name": "OPN1SW", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09455-1", "protein_name": "Retinol-binding protein 1", "gene_name": "RBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BX79-1", "protein_name": "Receptor for retinol uptake STRA6", "gene_name": "STRA6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TC12-1", "protein_name": "Retinol dehydrogenase 11", "gene_name": "RDH11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IZV5-1", "protein_name": "Retinol dehydrogenase 10", "gene_name": "RDH10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16518-1", "protein_name": "Retinoid isomerohydrolase", "gene_name": "RPE65", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02766-1", "protein_name": "Transthyretin", "gene_name": "TTR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZWL3-1", "protein_name": "Cytochrome P450 4V2", "gene_name": "CYP4V2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14061-1", "protein_name": "17-beta-hydroxysteroid dehydrogenase type 1", "gene_name": "HSD17B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NEX9-1", "protein_name": "Short-chain dehydrogenase/reductase family 9C member 7", "gene_name": "SDR9C7", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14756-1", "protein_name": "17-beta-hydroxysteroid dehydrogenase type 6", "gene_name": "HSD17B6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13402-1", "protein_name": "Unconventional myosin-VIIa", "gene_name": "MYO7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96NR8-1", "protein_name": "Retinol dehydrogenase 12", "gene_name": "RDH12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6E213-1", "protein_name": "Acyl-CoA wax alcohol acyltransferase 2", "gene_name": "AWAT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78363-1", "protein_name": "Retinal-specific phospholipid-transporting ATPase ABCA4", "gene_name": "ABCA4", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q92781", "url": "https://www.uniprot.org/uniprotkb/Q92781" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.2542268", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 27 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Fundus albipunctatus: review of the literature and report of a novel RDH5 gene mutation affecting the invariant tyrosine (p.Tyr175Phe).", "journal": "Journal of applied genetics", "date": "2015", "authors": "Skorczyk-Werner A, Pawlowski P, Michalczuk M, Warowicka A, Wawrocka A, Wicher K, Bakunowicz-Lazarczyk A, Krawczynski MR", "reference": { "type": "PubMed", "id": "25820994", "url": "https://pubmed.ncbi.nlm.nih.gov/25820994" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q92781-1", "protein_name": "Retinol dehydrogenase 5", "gene_name": "RDH5", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q92781", "url": "https://www.uniprot.org/uniprotkb/Q92781" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.25820994", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Homozygosity Mapping and Genetic Analysis of Autosomal Recessive Retinal Dystrophies in 144 Consanguineous Pakistani Families.", "journal": "Investigative ophthalmology & visual science", "date": "2017", "authors": "Li L, Chen Y, Jiao X, Jin C, Jiang D, Tanwar M, Ma Z, Huang L, Ma X, Sun W, Chen J, Ma Y, M'hamdi O, Govindarajan G, Cabrera PE, Li J, Gupta N, Naeem MA, Khan SN, Riazuddin S, Akram J, Ayyagari R, Sieving PA, Riazuddin SA, Hejtmancik JF", "reference": { "type": "PubMed", "id": "28418496", "url": "https://pubmed.ncbi.nlm.nih.gov/28418496" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q92781-1", "protein_name": "Retinol dehydrogenase 5", "gene_name": "RDH5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86VQ0-1", "protein_name": "Lebercilin", "gene_name": "LCA5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16518-1", "protein_name": "Retinoid isomerohydrolase", "gene_name": "RPE65", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q92781", "url": "https://www.uniprot.org/uniprotkb/Q92781" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.28418496", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Three human alcohol dehydrogenase subunits: cDNA structure and molecular and evolutionary divergence.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "1986", "authors": "Ikuta T, Szeto S, Yoshida A", "reference": { "type": "PubMed", "id": "2935875", "url": "https://pubmed.ncbi.nlm.nih.gov/2935875" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q92781-1", "protein_name": "Retinol dehydrogenase 5", "gene_name": "RDH5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NBN7-1", "protein_name": "Retinol dehydrogenase 13", "gene_name": "RDH13", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75452-1", "protein_name": "Retinol dehydrogenase 16", "gene_name": "RDH16", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N3Y7-1", "protein_name": "Epidermal retinol dehydrogenase 2", "gene_name": "SDR16C5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HBH5-1", "protein_name": "Retinol dehydrogenase 14", "gene_name": "RDH14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2A2-1", "protein_name": "2-aminomuconic semialdehyde dehydrogenase", "gene_name": "ALDH8A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42330-1", "protein_name": "Aldo-keto reductase family 1 member C3", "gene_name": "AKR1C3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75911-1", "protein_name": "Short-chain dehydrogenase/reductase 3", "gene_name": "DHRS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BPW9-1", "protein_name": "Dehydrogenase/reductase SDR family member 9", "gene_name": "DHRS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6V0L0-1", "protein_name": "Cytochrome P450 26C1", "gene_name": "CYP26C1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TC12-1", "protein_name": "Retinol dehydrogenase 11", "gene_name": "RDH11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IZV5-1", "protein_name": "Retinol dehydrogenase 10", "gene_name": "RDH10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NR63-1", "protein_name": "Cytochrome P450 26B1", "gene_name": "CYP26B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94788-1", "protein_name": "Retinal dehydrogenase 2", "gene_name": "ALDH1A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47895-1", "protein_name": "Retinaldehyde dehydrogenase 3", "gene_name": "ALDH1A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00325-1", "protein_name": "All-trans-retinol dehydrogenase [NAD(+)] ADH1B", "gene_name": "ADH1B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00326-1", "protein_name": "Alcohol dehydrogenase 1C", "gene_name": "ADH1C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07327-1", "protein_name": "Alcohol dehydrogenase 1A", "gene_name": "ADH1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43174-1", "protein_name": "Cytochrome P450 26A1", "gene_name": "CYP26A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29762-1", "protein_name": "Cellular retinoic acid-binding protein 1", "gene_name": "CRABP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTZ2-1", "protein_name": "Dehydrogenase/reductase SDR family member 4", "gene_name": "DHRS4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08319-1", "protein_name": "All-trans-retinol dehydrogenase [NAD(+)] ADH4", "gene_name": "ADH4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00352-1", "protein_name": "Aldehyde dehydrogenase 1A1", "gene_name": "ALDH1A1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q92781", "url": "https://www.uniprot.org/uniprotkb/Q92781" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.2935875", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 23 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Inhibition of dihydrotestosterone synthesis in prostate cancer by combined frontdoor and backdoor pathway blockade.", "journal": "Oncotarget", "date": "2018", "authors": "Fiandalo MV, Stocking JJ, Pop EA, Wilton JH, Mantione KM, Li Y, Attwood KM, Azabdaftari G, Wu Y, Watt DS, Wilson EM, Mohler JL", "reference": { "type": "PubMed", "id": "29541409", "url": "https://pubmed.ncbi.nlm.nih.gov/29541409" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q92781-1", "protein_name": "Retinol dehydrogenase 5", "gene_name": "RDH5", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75452-1", "protein_name": "Retinol dehydrogenase 16", "gene_name": "RDH16", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BPW9-1", "protein_name": "Dehydrogenase/reductase SDR family member 9", "gene_name": "DHRS9", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q92781", "url": "https://www.uniprot.org/uniprotkb/Q92781" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 175, "end_pos": 179, "sequence_org": "YCVSK", "sequence_mut": "FCVSR", "comment": "Decreases androsterone dehydrogenase activity.", "evidence": [ { "database": "UniProtKB", "id": "Q92781", "url": "https://www.uniprot.org/uniprotkb/Q92781" }, { "database": "PubMed", "id": "29541409", "url": "https://pubmed.ncbi.nlm.nih.gov/29541409" } ], "uniprot_canonical_ac": "Q92781-1" }, { "start_pos": 176, "end_pos": 176, "sequence_org": "Y", "sequence_mut": "F", "comment": "Decreases androsterone dehydrogenase activity; when associated with R-180.", "evidence": [ { "database": "UniProtKB", "id": "O75452", "url": "https://www.uniprot.org/uniprotkb/O75452" }, { "database": "PubMed", "id": "29541409", "url": "https://pubmed.ncbi.nlm.nih.gov/29541409" } ], "uniprot_canonical_ac": "O75452-1" }, { "start_pos": 180, "end_pos": 180, "sequence_org": "K", "sequence_mut": "R", "comment": "Decreases androsterone dehydrogenase activity; when associated with F-176.", "evidence": [ { "database": "UniProtKB", "id": "O75452", "url": "https://www.uniprot.org/uniprotkb/O75452" }, { "database": "PubMed", "id": "29541409", "url": "https://pubmed.ncbi.nlm.nih.gov/29541409" } ], "uniprot_canonical_ac": "O75452-1" }, { "start_pos": 176, "end_pos": 176, "sequence_org": "Y", "sequence_mut": "F", "comment": "Decreases androsterone dehydrogenase activity; when associated with R-180.", "evidence": [ { "database": "UniProtKB", "id": "Q9BPW9", "url": "https://www.uniprot.org/uniprotkb/Q9BPW9" }, { "database": "PubMed", "id": "29541409", "url": "https://pubmed.ncbi.nlm.nih.gov/29541409" } ], "uniprot_canonical_ac": "Q9BPW9-1" }, { "start_pos": 180, "end_pos": 180, "sequence_org": "K", "sequence_mut": "R", "comment": "Decreases androsterone dehydrogenase activity; when associated with F-176.", "evidence": [ { "database": "UniProtKB", "id": "Q9BPW9", "url": "https://www.uniprot.org/uniprotkb/Q9BPW9" }, { "database": "PubMed", "id": "29541409", "url": "https://pubmed.ncbi.nlm.nih.gov/29541409" } ], "uniprot_canonical_ac": "Q9BPW9-1" } ], "record_id": "pubmed.29541409", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "cDNA and protein structure for the alpha subunit of human liver alcohol dehydrogenase.", "journal": "Biochemistry", "date": "1986", "authors": "von Bahr-Lindstrom H, Hoog JO, Heden LO, Kaiser R, Fleetwood L, Larsson K, Lake M, Holmquist B, Holmgren A, Hempel J, et al.", "reference": { "type": "PubMed", "id": "3013304", "url": "https://pubmed.ncbi.nlm.nih.gov/3013304" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q92781-1", "protein_name": "Retinol dehydrogenase 5", "gene_name": "RDH5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NBN7-1", "protein_name": "Retinol dehydrogenase 13", "gene_name": "RDH13", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75452-1", "protein_name": "Retinol dehydrogenase 16", "gene_name": "RDH16", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N3Y7-1", "protein_name": "Epidermal retinol dehydrogenase 2", "gene_name": "SDR16C5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HBH5-1", "protein_name": "Retinol dehydrogenase 14", "gene_name": "RDH14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2A2-1", "protein_name": "2-aminomuconic semialdehyde dehydrogenase", "gene_name": "ALDH8A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42330-1", "protein_name": "Aldo-keto reductase family 1 member C3", "gene_name": "AKR1C3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75911-1", "protein_name": "Short-chain dehydrogenase/reductase 3", "gene_name": "DHRS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BPW9-1", "protein_name": "Dehydrogenase/reductase SDR family member 9", "gene_name": "DHRS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6V0L0-1", "protein_name": "Cytochrome P450 26C1", "gene_name": "CYP26C1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TC12-1", "protein_name": "Retinol dehydrogenase 11", "gene_name": "RDH11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IZV5-1", "protein_name": "Retinol dehydrogenase 10", "gene_name": "RDH10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NR63-1", "protein_name": "Cytochrome P450 26B1", "gene_name": "CYP26B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94788-1", "protein_name": "Retinal dehydrogenase 2", "gene_name": "ALDH1A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47895-1", "protein_name": "Retinaldehyde dehydrogenase 3", "gene_name": "ALDH1A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00326-1", "protein_name": "Alcohol dehydrogenase 1C", "gene_name": "ADH1C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07327-1", "protein_name": "Alcohol dehydrogenase 1A", "gene_name": "ADH1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43174-1", "protein_name": "Cytochrome P450 26A1", "gene_name": "CYP26A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29762-1", "protein_name": "Cellular retinoic acid-binding protein 1", "gene_name": "CRABP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTZ2-1", "protein_name": "Dehydrogenase/reductase SDR family member 4", "gene_name": "DHRS4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08319-1", "protein_name": "All-trans-retinol dehydrogenase [NAD(+)] ADH4", "gene_name": "ADH4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00352-1", "protein_name": "Aldehyde dehydrogenase 1A1", "gene_name": "ALDH1A1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q92781", "url": "https://www.uniprot.org/uniprotkb/Q92781" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.3013304", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 22 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Internal quadruplication in the structure of human interstitial retinol-binding protein deduced from its cloned cDNA.", "journal": "The Journal of biological chemistry", "date": "1988", "authors": "Fong SL, Bridges CD", "reference": { "type": "PubMed", "id": "3170584", "url": "https://pubmed.ncbi.nlm.nih.gov/3170584" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q92781-1", "protein_name": "Retinol dehydrogenase 5", "gene_name": "RDH5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NYR8-1", "protein_name": "Retinol dehydrogenase 8", "gene_name": "RDH8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75452-1", "protein_name": "Retinol dehydrogenase 16", "gene_name": "RDH16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10745-1", "protein_name": "Retinol-binding protein 3", "gene_name": "RBP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02753-1", "protein_name": "Retinol-binding protein 4", "gene_name": "RBP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12271-1", "protein_name": "Retinaldehyde-binding protein 1", "gene_name": "RLBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75911-1", "protein_name": "Short-chain dehydrogenase/reductase 3", "gene_name": "DHRS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BPW9-1", "protein_name": "Dehydrogenase/reductase SDR family member 9", "gene_name": "DHRS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95237-1", "protein_name": "Lecithin retinol acyltransferase", "gene_name": "LRAT", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04000-1", "protein_name": "Long-wave-sensitive opsin 1", "gene_name": "OPN1LW", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04001-1", "protein_name": "Medium-wave-sensitive opsin 1", "gene_name": "OPN1MW2; OPN1MW", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08100-1", "protein_name": "Rhodopsin", "gene_name": "RHO", "tax_name": "Human" }, { "uniprot_canonical_ac": "P03999-1", "protein_name": "Short-wave-sensitive opsin 1", "gene_name": "OPN1SW", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09455-1", "protein_name": "Retinol-binding protein 1", "gene_name": "RBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BX79-1", "protein_name": "Receptor for retinol uptake STRA6", "gene_name": "STRA6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TC12-1", "protein_name": "Retinol dehydrogenase 11", "gene_name": "RDH11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IZV5-1", "protein_name": "Retinol dehydrogenase 10", "gene_name": "RDH10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16518-1", "protein_name": "Retinoid isomerohydrolase", "gene_name": "RPE65", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02766-1", "protein_name": "Transthyretin", "gene_name": "TTR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZWL3-1", "protein_name": "Cytochrome P450 4V2", "gene_name": "CYP4V2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14061-1", "protein_name": "17-beta-hydroxysteroid dehydrogenase type 1", "gene_name": "HSD17B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NEX9-1", "protein_name": "Short-chain dehydrogenase/reductase family 9C member 7", "gene_name": "SDR9C7", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14756-1", "protein_name": "17-beta-hydroxysteroid dehydrogenase type 6", "gene_name": "HSD17B6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13402-1", "protein_name": "Unconventional myosin-VIIa", "gene_name": "MYO7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96NR8-1", "protein_name": "Retinol dehydrogenase 12", "gene_name": "RDH12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6E213-1", "protein_name": "Acyl-CoA wax alcohol acyltransferase 2", "gene_name": "AWAT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78363-1", "protein_name": "Retinal-specific phospholipid-transporting ATPase ABCA4", "gene_name": "ABCA4", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q92781", "url": "https://www.uniprot.org/uniprotkb/Q92781" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.3170584", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 27 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "RDH5-Related Fundus Albipunctatus in a Large Japanese Cohort.", "journal": "Investigative ophthalmology & visual science", "date": "2020", "authors": "Katagiri S, Hayashi T, Nakamura M, Mizobuchi K, Gekka T, Komori S, Ueno S, Terasaki H, Sakuramoto H, Kuniyoshi K, Kusaka S, Nagashima R, Kondo M, Fujinami K, Tsunoda K, Matsuura T, Kondo H, Yoshitake K, Iwata T, Nakano T", "reference": { "type": "PubMed", "id": "32232344", "url": "https://pubmed.ncbi.nlm.nih.gov/32232344" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q92781-1", "protein_name": "Retinol dehydrogenase 5", "gene_name": "RDH5", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q92781", "url": "https://www.uniprot.org/uniprotkb/Q92781" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.32232344", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Retinal dehydrogenase 5 (RHD5) attenuates metastasis via regulating HIPPO/YAP signaling pathway in Hepatocellular Carcinoma.", "journal": "International journal of medical sciences", "date": "2020", "authors": "Hu H, Xu L, Luo SJ, Xiang T, Chen Y, Cao ZR, Zhang YJ, Mo Z, Wang Y, Meng DF, Yu L, Lin LZ, Zhang SJ", "reference": { "type": "PubMed", "id": "32788868", "url": "https://pubmed.ncbi.nlm.nih.gov/32788868" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q92781-1", "protein_name": "Retinol dehydrogenase 5", "gene_name": "RDH5", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q92781", "url": "https://www.uniprot.org/uniprotkb/Q92781" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.32788868", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Shared Features in Retinal Disorders With Involvement of Retinal Pigment Epithelium.", "journal": "Investigative ophthalmology & visual science", "date": "2021", "authors": "Sparrow JR, Parmann R, Tsang SH, Allikmets R, Chang S, Jauregui R", "reference": { "type": "PubMed", "id": "34115091", "url": "https://pubmed.ncbi.nlm.nih.gov/34115091" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q92781-1", "protein_name": "Retinol dehydrogenase 5", "gene_name": "RDH5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12271-1", "protein_name": "Retinaldehyde-binding protein 1", "gene_name": "RLBP1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q92781", "url": "https://www.uniprot.org/uniprotkb/Q92781" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.34115091", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Novel variants in the RDH5 Gene in a Chinese Han family with fundus albipunctatus.", "journal": "BMC ophthalmology", "date": "2022", "authors": "Qian T, Gong Q, Shen H, Li C, Wang G, Xu X, Schrauwen I, Wang W", "reference": { "type": "PubMed", "id": "35148716", "url": "https://pubmed.ncbi.nlm.nih.gov/35148716" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q92781-1", "protein_name": "Retinol dehydrogenase 5", "gene_name": "RDH5", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q92781", "url": "https://www.uniprot.org/uniprotkb/Q92781" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.35148716", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The photosensitivities of visual pigments in the presence of hydroxylamine.", "journal": "Vision research", "date": "1968", "authors": "Dartnall HJ", "reference": { "type": "PubMed", "id": "5315589", "url": "https://pubmed.ncbi.nlm.nih.gov/5315589" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q92781-1", "protein_name": "Retinol dehydrogenase 5", "gene_name": "RDH5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NYR8-1", "protein_name": "Retinol dehydrogenase 8", "gene_name": "RDH8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75452-1", "protein_name": "Retinol dehydrogenase 16", "gene_name": "RDH16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10745-1", "protein_name": "Retinol-binding protein 3", "gene_name": "RBP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02753-1", "protein_name": "Retinol-binding protein 4", "gene_name": "RBP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12271-1", "protein_name": "Retinaldehyde-binding protein 1", "gene_name": "RLBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BPW9-1", "protein_name": "Dehydrogenase/reductase SDR family member 9", "gene_name": "DHRS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95237-1", "protein_name": "Lecithin retinol acyltransferase", "gene_name": "LRAT", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08100-1", "protein_name": "Rhodopsin", "gene_name": "RHO", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09455-1", "protein_name": "Retinol-binding protein 1", "gene_name": "RBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BX79-1", "protein_name": "Receptor for retinol uptake STRA6", "gene_name": "STRA6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TC12-1", "protein_name": "Retinol dehydrogenase 11", "gene_name": "RDH11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IZV5-1", "protein_name": "Retinol dehydrogenase 10", "gene_name": "RDH10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16518-1", "protein_name": "Retinoid isomerohydrolase", "gene_name": "RPE65", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02766-1", "protein_name": "Transthyretin", "gene_name": "TTR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZWL3-1", "protein_name": "Cytochrome P450 4V2", "gene_name": "CYP4V2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14061-1", "protein_name": "17-beta-hydroxysteroid dehydrogenase type 1", "gene_name": "HSD17B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NEX9-1", "protein_name": "Short-chain dehydrogenase/reductase family 9C member 7", "gene_name": "SDR9C7", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14756-1", "protein_name": "17-beta-hydroxysteroid dehydrogenase type 6", "gene_name": "HSD17B6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13402-1", "protein_name": "Unconventional myosin-VIIa", "gene_name": "MYO7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96NR8-1", "protein_name": "Retinol dehydrogenase 12", "gene_name": "RDH12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78363-1", "protein_name": "Retinal-specific phospholipid-transporting ATPase ABCA4", "gene_name": "ABCA4", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q92781", "url": "https://www.uniprot.org/uniprotkb/Q92781" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.5315589", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 22 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Complex formation between metarhodopsin II and GTP-binding protein in bovine photoreceptor membranes leads to a shift of the photoproduct equilibrium.", "journal": "FEBS letters", "date": "1982", "authors": "Emeis D, Kuhn H, Reichert J, Hofmann KP", "reference": { "type": "PubMed", "id": "6288450", "url": "https://pubmed.ncbi.nlm.nih.gov/6288450" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q92781-1", "protein_name": "Retinol dehydrogenase 5", "gene_name": "RDH5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NYR8-1", "protein_name": "Retinol dehydrogenase 8", "gene_name": "RDH8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75452-1", "protein_name": "Retinol dehydrogenase 16", "gene_name": "RDH16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10745-1", "protein_name": "Retinol-binding protein 3", "gene_name": "RBP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02753-1", "protein_name": "Retinol-binding protein 4", "gene_name": "RBP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12271-1", "protein_name": "Retinaldehyde-binding protein 1", "gene_name": "RLBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BPW9-1", "protein_name": "Dehydrogenase/reductase SDR family member 9", "gene_name": "DHRS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95237-1", "protein_name": "Lecithin retinol acyltransferase", "gene_name": "LRAT", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08100-1", "protein_name": "Rhodopsin", "gene_name": "RHO", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09455-1", "protein_name": "Retinol-binding protein 1", "gene_name": "RBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BX79-1", "protein_name": "Receptor for retinol uptake STRA6", "gene_name": "STRA6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TC12-1", "protein_name": "Retinol dehydrogenase 11", "gene_name": "RDH11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IZV5-1", "protein_name": "Retinol dehydrogenase 10", "gene_name": "RDH10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16518-1", "protein_name": "Retinoid isomerohydrolase", "gene_name": "RPE65", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02766-1", "protein_name": "Transthyretin", "gene_name": "TTR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZWL3-1", "protein_name": "Cytochrome P450 4V2", "gene_name": "CYP4V2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14061-1", "protein_name": "17-beta-hydroxysteroid dehydrogenase type 1", "gene_name": "HSD17B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NEX9-1", "protein_name": "Short-chain dehydrogenase/reductase family 9C member 7", "gene_name": "SDR9C7", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14756-1", "protein_name": "17-beta-hydroxysteroid dehydrogenase type 6", "gene_name": "HSD17B6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13402-1", "protein_name": "Unconventional myosin-VIIa", "gene_name": "MYO7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96NR8-1", "protein_name": "Retinol dehydrogenase 12", "gene_name": "RDH12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78363-1", "protein_name": "Retinal-specific phospholipid-transporting ATPase ABCA4", "gene_name": "ABCA4", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q92781", "url": "https://www.uniprot.org/uniprotkb/Q92781" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.6288450", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 22 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The structure of bovine rhodopsin.", "journal": "Biophysics of structure and mechanism", "date": "1983", "authors": "Hargrave PA, McDowell JH, Curtis DR, Wang JK, Juszczak E, Fong SL, Rao JK, Argos P", "reference": { "type": "PubMed", "id": "6342691", "url": "https://pubmed.ncbi.nlm.nih.gov/6342691" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q92781-1", "protein_name": "Retinol dehydrogenase 5", "gene_name": "RDH5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NYR8-1", "protein_name": "Retinol dehydrogenase 8", "gene_name": "RDH8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75452-1", "protein_name": "Retinol dehydrogenase 16", "gene_name": "RDH16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10745-1", "protein_name": "Retinol-binding protein 3", "gene_name": "RBP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02753-1", "protein_name": "Retinol-binding protein 4", "gene_name": "RBP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12271-1", "protein_name": "Retinaldehyde-binding protein 1", "gene_name": "RLBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BPW9-1", "protein_name": "Dehydrogenase/reductase SDR family member 9", "gene_name": "DHRS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95237-1", "protein_name": "Lecithin retinol acyltransferase", "gene_name": "LRAT", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08100-1", "protein_name": "Rhodopsin", "gene_name": "RHO", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09455-1", "protein_name": "Retinol-binding protein 1", "gene_name": "RBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BX79-1", "protein_name": "Receptor for retinol uptake STRA6", "gene_name": "STRA6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TC12-1", "protein_name": "Retinol dehydrogenase 11", "gene_name": "RDH11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IZV5-1", "protein_name": "Retinol dehydrogenase 10", "gene_name": "RDH10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16518-1", "protein_name": "Retinoid isomerohydrolase", "gene_name": "RPE65", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02766-1", "protein_name": "Transthyretin", "gene_name": "TTR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZWL3-1", "protein_name": "Cytochrome P450 4V2", "gene_name": "CYP4V2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14061-1", "protein_name": "17-beta-hydroxysteroid dehydrogenase type 1", "gene_name": "HSD17B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NEX9-1", "protein_name": "Short-chain dehydrogenase/reductase family 9C member 7", "gene_name": "SDR9C7", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14756-1", "protein_name": "17-beta-hydroxysteroid dehydrogenase type 6", "gene_name": "HSD17B6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13402-1", "protein_name": "Unconventional myosin-VIIa", "gene_name": "MYO7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96NR8-1", "protein_name": "Retinol dehydrogenase 12", "gene_name": "RDH12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78363-1", "protein_name": "Retinal-specific phospholipid-transporting ATPase ABCA4", "gene_name": "ABCA4", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q92781", "url": "https://www.uniprot.org/uniprotkb/Q92781" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.6342691", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 22 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The photocurrent, noise and spectral sensitivity of rods of the monkey Macaca fascicularis.", "journal": "The Journal of physiology", "date": "1984", "authors": "Baylor DA, Nunn BJ, Schnapf JL", "reference": { "type": "PubMed", "id": "6512705", "url": "https://pubmed.ncbi.nlm.nih.gov/6512705" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q92781-1", "protein_name": "Retinol dehydrogenase 5", "gene_name": "RDH5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NYR8-1", "protein_name": "Retinol dehydrogenase 8", "gene_name": "RDH8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75452-1", "protein_name": "Retinol dehydrogenase 16", "gene_name": "RDH16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10745-1", "protein_name": "Retinol-binding protein 3", "gene_name": "RBP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02753-1", "protein_name": "Retinol-binding protein 4", "gene_name": "RBP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12271-1", "protein_name": "Retinaldehyde-binding protein 1", "gene_name": "RLBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BPW9-1", "protein_name": "Dehydrogenase/reductase SDR family member 9", "gene_name": "DHRS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95237-1", "protein_name": "Lecithin retinol acyltransferase", "gene_name": "LRAT", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08100-1", "protein_name": "Rhodopsin", "gene_name": "RHO", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09455-1", "protein_name": "Retinol-binding protein 1", "gene_name": "RBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BX79-1", "protein_name": "Receptor for retinol uptake STRA6", "gene_name": "STRA6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TC12-1", "protein_name": "Retinol dehydrogenase 11", "gene_name": "RDH11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IZV5-1", "protein_name": "Retinol dehydrogenase 10", "gene_name": "RDH10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16518-1", "protein_name": "Retinoid isomerohydrolase", "gene_name": "RPE65", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02766-1", "protein_name": "Transthyretin", "gene_name": "TTR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZWL3-1", "protein_name": "Cytochrome P450 4V2", "gene_name": "CYP4V2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14061-1", "protein_name": "17-beta-hydroxysteroid dehydrogenase type 1", "gene_name": "HSD17B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NEX9-1", "protein_name": "Short-chain dehydrogenase/reductase family 9C member 7", "gene_name": "SDR9C7", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14756-1", "protein_name": "17-beta-hydroxysteroid dehydrogenase type 6", "gene_name": "HSD17B6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13402-1", "protein_name": "Unconventional myosin-VIIa", "gene_name": "MYO7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96NR8-1", "protein_name": "Retinol dehydrogenase 12", "gene_name": "RDH12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78363-1", "protein_name": "Retinal-specific phospholipid-transporting ATPase ABCA4", "gene_name": "ABCA4", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q92781", "url": "https://www.uniprot.org/uniprotkb/Q92781" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.6512705", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 22 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Isolation and nucleotide sequence of the gene encoding human rhodopsin.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "1984", "authors": "Nathans J, Hogness DS", "reference": { "type": "PubMed", "id": "6589631", "url": "https://pubmed.ncbi.nlm.nih.gov/6589631" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q92781-1", "protein_name": "Retinol dehydrogenase 5", "gene_name": "RDH5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NYR8-1", "protein_name": "Retinol dehydrogenase 8", "gene_name": "RDH8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75452-1", "protein_name": "Retinol dehydrogenase 16", "gene_name": "RDH16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10745-1", "protein_name": "Retinol-binding protein 3", "gene_name": "RBP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02753-1", "protein_name": "Retinol-binding protein 4", "gene_name": "RBP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12271-1", "protein_name": "Retinaldehyde-binding protein 1", "gene_name": "RLBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6U736-1", "protein_name": "Opsin-5", "gene_name": "OPN5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHM6-1", "protein_name": "Melanopsin", "gene_name": "OPN4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BPW9-1", "protein_name": "Dehydrogenase/reductase SDR family member 9", "gene_name": "DHRS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95237-1", "protein_name": "Lecithin retinol acyltransferase", "gene_name": "LRAT", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04000-1", "protein_name": "Long-wave-sensitive opsin 1", "gene_name": "OPN1LW", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04001-1", "protein_name": "Medium-wave-sensitive opsin 1", "gene_name": "OPN1MW2; OPN1MW", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08100-1", "protein_name": "Rhodopsin", "gene_name": "RHO", "tax_name": "Human" }, { "uniprot_canonical_ac": "P03999-1", "protein_name": "Short-wave-sensitive opsin 1", "gene_name": "OPN1SW", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H1Y3-1", "protein_name": "Opsin-3", "gene_name": "OPN3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09455-1", "protein_name": "Retinol-binding protein 1", "gene_name": "RBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BX79-1", "protein_name": "Receptor for retinol uptake STRA6", "gene_name": "STRA6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TC12-1", "protein_name": "Retinol dehydrogenase 11", "gene_name": "RDH11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IZV5-1", "protein_name": "Retinol dehydrogenase 10", "gene_name": "RDH10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16518-1", "protein_name": "Retinoid isomerohydrolase", "gene_name": "RPE65", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02766-1", "protein_name": "Transthyretin", "gene_name": "TTR", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47804-1", "protein_name": "RPE-retinal G protein-coupled receptor", "gene_name": "RGR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZWL3-1", "protein_name": "Cytochrome P450 4V2", "gene_name": "CYP4V2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14061-1", "protein_name": "17-beta-hydroxysteroid dehydrogenase type 1", "gene_name": "HSD17B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NEX9-1", "protein_name": "Short-chain dehydrogenase/reductase family 9C member 7", "gene_name": "SDR9C7", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14756-1", "protein_name": "17-beta-hydroxysteroid dehydrogenase type 6", "gene_name": "HSD17B6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13402-1", "protein_name": "Unconventional myosin-VIIa", "gene_name": "MYO7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14718-1", "protein_name": "Visual pigment-like receptor peropsin", "gene_name": "RRH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96NR8-1", "protein_name": "Retinol dehydrogenase 12", "gene_name": "RDH12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78363-1", "protein_name": "Retinal-specific phospholipid-transporting ATPase ABCA4", "gene_name": "ABCA4", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q92781", "url": "https://www.uniprot.org/uniprotkb/Q92781" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.6589631", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 30 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "[Visual rhodopsin. III. Complete amino acid sequence and topography in a membrane].", "journal": "Bioorganicheskaia khimiia", "date": "1983", "authors": "Ovchinnikov IuA, Abdulaev NG, Feigina MIu, Artamonov ID, Bogachuk AS", "reference": { "type": "PubMed", "id": "6679757", "url": "https://pubmed.ncbi.nlm.nih.gov/6679757" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q92781-1", "protein_name": "Retinol dehydrogenase 5", "gene_name": "RDH5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NYR8-1", "protein_name": "Retinol dehydrogenase 8", "gene_name": "RDH8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75452-1", "protein_name": "Retinol dehydrogenase 16", "gene_name": "RDH16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10745-1", "protein_name": "Retinol-binding protein 3", "gene_name": "RBP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02753-1", "protein_name": "Retinol-binding protein 4", "gene_name": "RBP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12271-1", "protein_name": "Retinaldehyde-binding protein 1", "gene_name": "RLBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BPW9-1", "protein_name": "Dehydrogenase/reductase SDR family member 9", "gene_name": "DHRS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95237-1", "protein_name": "Lecithin retinol acyltransferase", "gene_name": "LRAT", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08100-1", "protein_name": "Rhodopsin", "gene_name": "RHO", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09455-1", "protein_name": "Retinol-binding protein 1", "gene_name": "RBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BX79-1", "protein_name": "Receptor for retinol uptake STRA6", "gene_name": "STRA6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TC12-1", "protein_name": "Retinol dehydrogenase 11", "gene_name": "RDH11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IZV5-1", "protein_name": "Retinol dehydrogenase 10", "gene_name": "RDH10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16518-1", "protein_name": "Retinoid isomerohydrolase", "gene_name": "RPE65", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02766-1", "protein_name": "Transthyretin", "gene_name": "TTR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZWL3-1", "protein_name": "Cytochrome P450 4V2", "gene_name": "CYP4V2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14061-1", "protein_name": "17-beta-hydroxysteroid dehydrogenase type 1", "gene_name": "HSD17B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NEX9-1", "protein_name": "Short-chain dehydrogenase/reductase family 9C member 7", "gene_name": "SDR9C7", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14756-1", "protein_name": "17-beta-hydroxysteroid dehydrogenase type 6", "gene_name": "HSD17B6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13402-1", "protein_name": "Unconventional myosin-VIIa", "gene_name": "MYO7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96NR8-1", "protein_name": "Retinol dehydrogenase 12", "gene_name": "RDH12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78363-1", "protein_name": "Retinal-specific phospholipid-transporting ATPase ABCA4", "gene_name": "ABCA4", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q92781", "url": "https://www.uniprot.org/uniprotkb/Q92781" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.6679757", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 22 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Molecular cloning and structural analysis of the human gene encoding cellular retinaldehyde-binding protein.", "journal": "The Journal of biological chemistry", "date": "1994", "authors": "Intres R, Goldflam S, Cook JR, Crabb JW", "reference": { "type": "PubMed", "id": "7929238", "url": "https://pubmed.ncbi.nlm.nih.gov/7929238" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q92781-1", "protein_name": "Retinol dehydrogenase 5", "gene_name": "RDH5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NYR8-1", "protein_name": "Retinol dehydrogenase 8", "gene_name": "RDH8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75452-1", "protein_name": "Retinol dehydrogenase 16", "gene_name": "RDH16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10745-1", "protein_name": "Retinol-binding protein 3", "gene_name": "RBP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02753-1", "protein_name": "Retinol-binding protein 4", "gene_name": "RBP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12271-1", "protein_name": "Retinaldehyde-binding protein 1", "gene_name": "RLBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BPW9-1", "protein_name": "Dehydrogenase/reductase SDR family member 9", "gene_name": "DHRS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95237-1", "protein_name": "Lecithin retinol acyltransferase", "gene_name": "LRAT", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08100-1", "protein_name": "Rhodopsin", "gene_name": "RHO", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09455-1", "protein_name": "Retinol-binding protein 1", "gene_name": "RBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BX79-1", "protein_name": "Receptor for retinol uptake STRA6", "gene_name": "STRA6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TC12-1", "protein_name": "Retinol dehydrogenase 11", "gene_name": "RDH11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IZV5-1", "protein_name": "Retinol dehydrogenase 10", "gene_name": "RDH10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16518-1", "protein_name": "Retinoid isomerohydrolase", "gene_name": "RPE65", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02766-1", "protein_name": "Transthyretin", "gene_name": "TTR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZWL3-1", "protein_name": "Cytochrome P450 4V2", "gene_name": "CYP4V2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14061-1", "protein_name": "17-beta-hydroxysteroid dehydrogenase type 1", "gene_name": "HSD17B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NEX9-1", "protein_name": "Short-chain dehydrogenase/reductase family 9C member 7", "gene_name": "SDR9C7", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14756-1", "protein_name": "17-beta-hydroxysteroid dehydrogenase type 6", "gene_name": "HSD17B6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13402-1", "protein_name": "Unconventional myosin-VIIa", "gene_name": "MYO7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96NR8-1", "protein_name": "Retinol dehydrogenase 12", "gene_name": "RDH12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78363-1", "protein_name": "Retinal-specific phospholipid-transporting ATPase ABCA4", "gene_name": "ABCA4", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q92781", "url": "https://www.uniprot.org/uniprotkb/Q92781" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.7929238", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 22 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Localization of the retinal protonated Schiff base counterion in rhodopsin.", "journal": "Biophysical journal", "date": "1993", "authors": "Han M, DeDecker BS, Smith SO", "reference": { "type": "PubMed", "id": "8105993", "url": "https://pubmed.ncbi.nlm.nih.gov/8105993" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q92781-1", "protein_name": "Retinol dehydrogenase 5", "gene_name": "RDH5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NYR8-1", "protein_name": "Retinol dehydrogenase 8", "gene_name": "RDH8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75452-1", "protein_name": "Retinol dehydrogenase 16", "gene_name": "RDH16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10745-1", "protein_name": "Retinol-binding protein 3", "gene_name": "RBP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02753-1", "protein_name": "Retinol-binding protein 4", "gene_name": "RBP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12271-1", "protein_name": "Retinaldehyde-binding protein 1", "gene_name": "RLBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BPW9-1", "protein_name": "Dehydrogenase/reductase SDR family member 9", "gene_name": "DHRS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95237-1", "protein_name": "Lecithin retinol acyltransferase", "gene_name": "LRAT", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08100-1", "protein_name": "Rhodopsin", "gene_name": "RHO", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09455-1", "protein_name": "Retinol-binding protein 1", "gene_name": "RBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BX79-1", "protein_name": "Receptor for retinol uptake STRA6", "gene_name": "STRA6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TC12-1", "protein_name": "Retinol dehydrogenase 11", "gene_name": "RDH11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IZV5-1", "protein_name": "Retinol dehydrogenase 10", "gene_name": "RDH10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16518-1", "protein_name": "Retinoid isomerohydrolase", "gene_name": "RPE65", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02766-1", "protein_name": "Transthyretin", "gene_name": "TTR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZWL3-1", "protein_name": "Cytochrome P450 4V2", "gene_name": "CYP4V2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14061-1", "protein_name": "17-beta-hydroxysteroid dehydrogenase type 1", "gene_name": "HSD17B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NEX9-1", "protein_name": "Short-chain dehydrogenase/reductase family 9C member 7", "gene_name": "SDR9C7", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14756-1", "protein_name": "17-beta-hydroxysteroid dehydrogenase type 6", "gene_name": "HSD17B6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13402-1", "protein_name": "Unconventional myosin-VIIa", "gene_name": "MYO7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96NR8-1", "protein_name": "Retinol dehydrogenase 12", "gene_name": "RDH12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78363-1", "protein_name": "Retinal-specific phospholipid-transporting ATPase ABCA4", "gene_name": "ABCA4", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q92781", "url": "https://www.uniprot.org/uniprotkb/Q92781" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.8105993", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 22 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Biological role of human cytosolic aldehyde dehydrogenase 1: hormonal response, retinal oxidation and implication in testicular feminization.", "journal": "Advances in experimental medicine and biology", "date": "1993", "authors": "Yoshida A, Hsu LC, Yanagawa Y", "reference": { "type": "PubMed", "id": "8493914", "url": "https://pubmed.ncbi.nlm.nih.gov/8493914" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q92781-1", "protein_name": "Retinol dehydrogenase 5", "gene_name": "RDH5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NBN7-1", "protein_name": "Retinol dehydrogenase 13", "gene_name": "RDH13", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75452-1", "protein_name": "Retinol dehydrogenase 16", "gene_name": "RDH16", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N3Y7-1", "protein_name": "Epidermal retinol dehydrogenase 2", "gene_name": "SDR16C5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HBH5-1", "protein_name": "Retinol dehydrogenase 14", "gene_name": "RDH14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2A2-1", "protein_name": "2-aminomuconic semialdehyde dehydrogenase", "gene_name": "ALDH8A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42330-1", "protein_name": "Aldo-keto reductase family 1 member C3", "gene_name": "AKR1C3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75911-1", "protein_name": "Short-chain dehydrogenase/reductase 3", "gene_name": "DHRS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BPW9-1", "protein_name": "Dehydrogenase/reductase SDR family member 9", "gene_name": "DHRS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6V0L0-1", "protein_name": "Cytochrome P450 26C1", "gene_name": "CYP26C1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TC12-1", "protein_name": "Retinol dehydrogenase 11", "gene_name": "RDH11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IZV5-1", "protein_name": "Retinol dehydrogenase 10", "gene_name": "RDH10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NR63-1", "protein_name": "Cytochrome P450 26B1", "gene_name": "CYP26B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94788-1", "protein_name": "Retinal dehydrogenase 2", "gene_name": "ALDH1A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47895-1", "protein_name": "Retinaldehyde dehydrogenase 3", "gene_name": "ALDH1A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00326-1", "protein_name": "Alcohol dehydrogenase 1C", "gene_name": "ADH1C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07327-1", "protein_name": "Alcohol dehydrogenase 1A", "gene_name": "ADH1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43174-1", "protein_name": "Cytochrome P450 26A1", "gene_name": "CYP26A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29762-1", "protein_name": "Cellular retinoic acid-binding protein 1", "gene_name": "CRABP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTZ2-1", "protein_name": "Dehydrogenase/reductase SDR family member 4", "gene_name": "DHRS4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08319-1", "protein_name": "All-trans-retinol dehydrogenase [NAD(+)] ADH4", "gene_name": "ADH4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00352-1", "protein_name": "Aldehyde dehydrogenase 1A1", "gene_name": "ALDH1A1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q92781", "url": "https://www.uniprot.org/uniprotkb/Q92781" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.8493914", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 22 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Primary structure of human 11-cis retinol dehydrogenase and organization and chromosomal localization of the corresponding gene.", "journal": "Genomics", "date": "1996", "authors": "Simon A, Lagercrantz J, Bajalica-Lagercrantz S, Eriksson U", "reference": { "type": "PubMed", "id": "8884265", "url": "https://pubmed.ncbi.nlm.nih.gov/8884265" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q92781-1", "protein_name": "Retinol dehydrogenase 5", "gene_name": "RDH5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NYR8-1", "protein_name": "Retinol dehydrogenase 8", "gene_name": "RDH8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75452-1", "protein_name": "Retinol dehydrogenase 16", "gene_name": "RDH16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10745-1", "protein_name": "Retinol-binding protein 3", "gene_name": "RBP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02753-1", "protein_name": "Retinol-binding protein 4", "gene_name": "RBP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12271-1", "protein_name": "Retinaldehyde-binding protein 1", "gene_name": "RLBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BPW9-1", "protein_name": "Dehydrogenase/reductase SDR family member 9", "gene_name": "DHRS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95237-1", "protein_name": "Lecithin retinol acyltransferase", "gene_name": "LRAT", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08100-1", "protein_name": "Rhodopsin", "gene_name": "RHO", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09455-1", "protein_name": "Retinol-binding protein 1", "gene_name": "RBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BX79-1", "protein_name": "Receptor for retinol uptake STRA6", "gene_name": "STRA6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TC12-1", "protein_name": "Retinol dehydrogenase 11", "gene_name": "RDH11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IZV5-1", "protein_name": "Retinol dehydrogenase 10", "gene_name": "RDH10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16518-1", "protein_name": "Retinoid isomerohydrolase", "gene_name": "RPE65", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02766-1", "protein_name": "Transthyretin", "gene_name": "TTR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZWL3-1", "protein_name": "Cytochrome P450 4V2", "gene_name": "CYP4V2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14061-1", "protein_name": "17-beta-hydroxysteroid dehydrogenase type 1", "gene_name": "HSD17B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NEX9-1", "protein_name": "Short-chain dehydrogenase/reductase family 9C member 7", "gene_name": "SDR9C7", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14756-1", "protein_name": "17-beta-hydroxysteroid dehydrogenase type 6", "gene_name": "HSD17B6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13402-1", "protein_name": "Unconventional myosin-VIIa", "gene_name": "MYO7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96NR8-1", "protein_name": "Retinol dehydrogenase 12", "gene_name": "RDH12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78363-1", "protein_name": "Retinal-specific phospholipid-transporting ATPase ABCA4", "gene_name": "ABCA4", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q92781", "url": "https://www.uniprot.org/uniprotkb/Q92781" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.8884265", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 22 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Identification and characterization of a stereospecific human enzyme that catalyzes 9-cis-retinol oxidation. A possible role in 9-cis-retinoic acid formation.", "journal": "The Journal of biological chemistry", "date": "1997", "authors": "Mertz JR, Shang E, Piantedosi R, Wei S, Wolgemuth DJ, Blaner WS", "reference": { "type": "PubMed", "id": "9115228", "url": "https://pubmed.ncbi.nlm.nih.gov/9115228" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q92781-1", "protein_name": "Retinol dehydrogenase 5", "gene_name": "RDH5", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q92781", "url": "https://www.uniprot.org/uniprotkb/Q92781" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.9115228", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "X-ray structure of human class IV sigmasigma alcohol dehydrogenase. Structural basis for substrate specificity.", "journal": "The Journal of biological chemistry", "date": "1997", "authors": "Xie P, Parsons SH, Speckhard DC, Bosron WF, Hurley TD", "reference": { "type": "PubMed", "id": "9228021", "url": "https://pubmed.ncbi.nlm.nih.gov/9228021" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q92781-1", "protein_name": "Retinol dehydrogenase 5", "gene_name": "RDH5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NBN7-1", "protein_name": "Retinol dehydrogenase 13", "gene_name": "RDH13", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75452-1", "protein_name": "Retinol dehydrogenase 16", "gene_name": "RDH16", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N3Y7-1", "protein_name": "Epidermal retinol dehydrogenase 2", "gene_name": "SDR16C5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HBH5-1", "protein_name": "Retinol dehydrogenase 14", "gene_name": "RDH14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2A2-1", "protein_name": "2-aminomuconic semialdehyde dehydrogenase", "gene_name": "ALDH8A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42330-1", "protein_name": "Aldo-keto reductase family 1 member C3", "gene_name": "AKR1C3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75911-1", "protein_name": "Short-chain dehydrogenase/reductase 3", "gene_name": "DHRS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BPW9-1", "protein_name": "Dehydrogenase/reductase SDR family member 9", "gene_name": "DHRS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6V0L0-1", "protein_name": "Cytochrome P450 26C1", "gene_name": "CYP26C1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TC12-1", "protein_name": "Retinol dehydrogenase 11", "gene_name": "RDH11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IZV5-1", "protein_name": "Retinol dehydrogenase 10", "gene_name": "RDH10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NR63-1", "protein_name": "Cytochrome P450 26B1", "gene_name": "CYP26B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94788-1", "protein_name": "Retinal dehydrogenase 2", "gene_name": "ALDH1A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47895-1", "protein_name": "Retinaldehyde dehydrogenase 3", "gene_name": "ALDH1A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00326-1", "protein_name": "Alcohol dehydrogenase 1C", "gene_name": "ADH1C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07327-1", "protein_name": "Alcohol dehydrogenase 1A", "gene_name": "ADH1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43174-1", "protein_name": "Cytochrome P450 26A1", "gene_name": "CYP26A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29762-1", "protein_name": "Cellular retinoic acid-binding protein 1", "gene_name": "CRABP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTZ2-1", "protein_name": "Dehydrogenase/reductase SDR family member 4", "gene_name": "DHRS4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08319-1", "protein_name": "All-trans-retinol dehydrogenase [NAD(+)] ADH4", "gene_name": "ADH4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40394-1", "protein_name": "All-trans-retinol dehydrogenase [NAD(+)] ADH7", "gene_name": "ADH7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00352-1", "protein_name": "Aldehyde dehydrogenase 1A1", "gene_name": "ALDH1A1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q92781", "url": "https://www.uniprot.org/uniprotkb/Q92781" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.9228021", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 23 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Mapping of the rod photoreceptor ABC transporter (ABCR) to 1p21-p22.1 and identification of novel mutations in Stargardt's disease.", "journal": "Human genetics", "date": "1998", "authors": "Nasonkin I, Illing M, Koehler MR, Schmid M, Molday RS, Weber BH", "reference": { "type": "PubMed", "id": "9490294", "url": "https://pubmed.ncbi.nlm.nih.gov/9490294" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q92781-1", "protein_name": "Retinol dehydrogenase 5", "gene_name": "RDH5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NYR8-1", "protein_name": "Retinol dehydrogenase 8", "gene_name": "RDH8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75452-1", "protein_name": "Retinol dehydrogenase 16", "gene_name": "RDH16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10745-1", "protein_name": "Retinol-binding protein 3", "gene_name": "RBP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02753-1", "protein_name": "Retinol-binding protein 4", "gene_name": "RBP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12271-1", "protein_name": "Retinaldehyde-binding protein 1", "gene_name": "RLBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BPW9-1", "protein_name": "Dehydrogenase/reductase SDR family member 9", "gene_name": "DHRS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95237-1", "protein_name": "Lecithin retinol acyltransferase", "gene_name": "LRAT", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08100-1", "protein_name": "Rhodopsin", "gene_name": "RHO", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09455-1", "protein_name": "Retinol-binding protein 1", "gene_name": "RBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BX79-1", "protein_name": "Receptor for retinol uptake STRA6", "gene_name": "STRA6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TC12-1", "protein_name": "Retinol dehydrogenase 11", "gene_name": "RDH11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IZV5-1", "protein_name": "Retinol dehydrogenase 10", "gene_name": "RDH10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16518-1", "protein_name": "Retinoid isomerohydrolase", "gene_name": "RPE65", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02766-1", "protein_name": "Transthyretin", "gene_name": "TTR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZWL3-1", "protein_name": "Cytochrome P450 4V2", "gene_name": "CYP4V2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14061-1", "protein_name": "17-beta-hydroxysteroid dehydrogenase type 1", "gene_name": "HSD17B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NEX9-1", "protein_name": "Short-chain dehydrogenase/reductase family 9C member 7", "gene_name": "SDR9C7", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14756-1", "protein_name": "17-beta-hydroxysteroid dehydrogenase type 6", "gene_name": "HSD17B6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13402-1", "protein_name": "Unconventional myosin-VIIa", "gene_name": "MYO7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96NR8-1", "protein_name": "Retinol dehydrogenase 12", "gene_name": "RDH12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78363-1", "protein_name": "Retinal-specific phospholipid-transporting ATPase ABCA4", "gene_name": "ABCA4", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q92781", "url": "https://www.uniprot.org/uniprotkb/Q92781" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.9490294", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 22 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Structural and functional characterization of recombinant human cellular retinaldehyde-binding protein.", "journal": "Protein science : a publication of the Protein Society", "date": "1998", "authors": "Crabb JW, Carlson A, Chen Y, Goldflam S, Intres R, West KA, Hulmes JD, Kapron JT, Luck LA, Horwitz J, Bok D", "reference": { "type": "PubMed", "id": "9541407", "url": "https://pubmed.ncbi.nlm.nih.gov/9541407" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q92781-1", "protein_name": "Retinol dehydrogenase 5", "gene_name": "RDH5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NYR8-1", "protein_name": "Retinol dehydrogenase 8", "gene_name": "RDH8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75452-1", "protein_name": "Retinol dehydrogenase 16", "gene_name": "RDH16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10745-1", "protein_name": "Retinol-binding protein 3", "gene_name": "RBP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02753-1", "protein_name": "Retinol-binding protein 4", "gene_name": "RBP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12271-1", "protein_name": "Retinaldehyde-binding protein 1", "gene_name": "RLBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75911-1", "protein_name": "Short-chain dehydrogenase/reductase 3", "gene_name": "DHRS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BPW9-1", "protein_name": "Dehydrogenase/reductase SDR family member 9", "gene_name": "DHRS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95237-1", "protein_name": "Lecithin retinol acyltransferase", "gene_name": "LRAT", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04000-1", "protein_name": "Long-wave-sensitive opsin 1", "gene_name": "OPN1LW", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04001-1", "protein_name": "Medium-wave-sensitive opsin 1", "gene_name": "OPN1MW2; OPN1MW", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08100-1", "protein_name": "Rhodopsin", "gene_name": "RHO", "tax_name": "Human" }, { "uniprot_canonical_ac": "P03999-1", "protein_name": "Short-wave-sensitive opsin 1", "gene_name": "OPN1SW", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09455-1", "protein_name": "Retinol-binding protein 1", "gene_name": "RBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BX79-1", "protein_name": "Receptor for retinol uptake STRA6", "gene_name": "STRA6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TC12-1", "protein_name": "Retinol dehydrogenase 11", "gene_name": "RDH11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IZV5-1", "protein_name": "Retinol dehydrogenase 10", "gene_name": "RDH10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16518-1", "protein_name": "Retinoid isomerohydrolase", "gene_name": "RPE65", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02766-1", "protein_name": "Transthyretin", "gene_name": "TTR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZWL3-1", "protein_name": "Cytochrome P450 4V2", "gene_name": "CYP4V2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14061-1", "protein_name": "17-beta-hydroxysteroid dehydrogenase type 1", "gene_name": "HSD17B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NEX9-1", "protein_name": "Short-chain dehydrogenase/reductase family 9C member 7", "gene_name": "SDR9C7", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14756-1", "protein_name": "17-beta-hydroxysteroid dehydrogenase type 6", "gene_name": "HSD17B6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13402-1", "protein_name": "Unconventional myosin-VIIa", "gene_name": "MYO7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96NR8-1", "protein_name": "Retinol dehydrogenase 12", "gene_name": "RDH12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6E213-1", "protein_name": "Acyl-CoA wax alcohol acyltransferase 2", "gene_name": "AWAT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78363-1", "protein_name": "Retinal-specific phospholipid-transporting ATPase ABCA4", "gene_name": "ABCA4", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q92781", "url": "https://www.uniprot.org/uniprotkb/Q92781" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.9541407", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 27 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "cDNA cloning and characterization of a new human microsomal NAD+-dependent dehydrogenase that oxidizes all-trans-retinol and 3alpha-hydroxysteroids.", "journal": "The Journal of biological chemistry", "date": "1998", "authors": "Gough WH, VanOoteghem S, Sint T, Kedishvili NY", "reference": { "type": "PubMed", "id": "9677409", "url": "https://pubmed.ncbi.nlm.nih.gov/9677409" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q92781-1", "protein_name": "Retinol dehydrogenase 5", "gene_name": "RDH5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NBN7-1", "protein_name": "Retinol dehydrogenase 13", "gene_name": "RDH13", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75452-1", "protein_name": "Retinol dehydrogenase 16", "gene_name": "RDH16", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N3Y7-1", "protein_name": "Epidermal retinol dehydrogenase 2", "gene_name": "SDR16C5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HBH5-1", "protein_name": "Retinol dehydrogenase 14", "gene_name": "RDH14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2A2-1", "protein_name": "2-aminomuconic semialdehyde dehydrogenase", "gene_name": "ALDH8A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42330-1", "protein_name": "Aldo-keto reductase family 1 member C3", "gene_name": "AKR1C3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75911-1", "protein_name": "Short-chain dehydrogenase/reductase 3", "gene_name": "DHRS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BPW9-1", "protein_name": "Dehydrogenase/reductase SDR family member 9", "gene_name": "DHRS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6V0L0-1", "protein_name": "Cytochrome P450 26C1", "gene_name": "CYP26C1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TC12-1", "protein_name": "Retinol dehydrogenase 11", "gene_name": "RDH11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IZV5-1", "protein_name": "Retinol dehydrogenase 10", "gene_name": "RDH10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NR63-1", "protein_name": "Cytochrome P450 26B1", "gene_name": "CYP26B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94788-1", "protein_name": "Retinal dehydrogenase 2", "gene_name": "ALDH1A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47895-1", "protein_name": "Retinaldehyde dehydrogenase 3", "gene_name": "ALDH1A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00326-1", "protein_name": "Alcohol dehydrogenase 1C", "gene_name": "ADH1C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07327-1", "protein_name": "Alcohol dehydrogenase 1A", "gene_name": "ADH1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43174-1", "protein_name": "Cytochrome P450 26A1", "gene_name": "CYP26A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29762-1", "protein_name": "Cellular retinoic acid-binding protein 1", "gene_name": "CRABP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTZ2-1", "protein_name": "Dehydrogenase/reductase SDR family member 4", "gene_name": "DHRS4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08319-1", "protein_name": "All-trans-retinol dehydrogenase [NAD(+)] ADH4", "gene_name": "ADH4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00352-1", "protein_name": "Aldehyde dehydrogenase 1A1", "gene_name": "ALDH1A1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q92781", "url": "https://www.uniprot.org/uniprotkb/Q92781" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.9677409", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 22 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The human photoreceptor rim protein gene (ABCR): genomic structure and primer set information for mutation analysis.", "journal": "Human genetics", "date": "1998", "authors": "Azarian SM, Megarity CF, Weng J, Horvath DH, Travis GH", "reference": { "type": "PubMed", "id": "9703434", "url": "https://pubmed.ncbi.nlm.nih.gov/9703434" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q92781-1", "protein_name": "Retinol dehydrogenase 5", "gene_name": "RDH5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NYR8-1", "protein_name": "Retinol dehydrogenase 8", "gene_name": "RDH8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75452-1", "protein_name": "Retinol dehydrogenase 16", "gene_name": "RDH16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10745-1", "protein_name": "Retinol-binding protein 3", "gene_name": "RBP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02753-1", "protein_name": "Retinol-binding protein 4", "gene_name": "RBP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12271-1", "protein_name": "Retinaldehyde-binding protein 1", "gene_name": "RLBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BPW9-1", "protein_name": "Dehydrogenase/reductase SDR family member 9", "gene_name": "DHRS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95237-1", "protein_name": "Lecithin retinol acyltransferase", "gene_name": "LRAT", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08100-1", "protein_name": "Rhodopsin", "gene_name": "RHO", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09455-1", "protein_name": "Retinol-binding protein 1", "gene_name": "RBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BX79-1", "protein_name": "Receptor for retinol uptake STRA6", "gene_name": "STRA6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TC12-1", "protein_name": "Retinol dehydrogenase 11", "gene_name": "RDH11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IZV5-1", "protein_name": "Retinol dehydrogenase 10", "gene_name": "RDH10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16518-1", "protein_name": "Retinoid isomerohydrolase", "gene_name": "RPE65", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02766-1", "protein_name": "Transthyretin", "gene_name": "TTR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZWL3-1", "protein_name": "Cytochrome P450 4V2", "gene_name": "CYP4V2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14061-1", "protein_name": "17-beta-hydroxysteroid dehydrogenase type 1", "gene_name": "HSD17B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NEX9-1", "protein_name": "Short-chain dehydrogenase/reductase family 9C member 7", "gene_name": "SDR9C7", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14756-1", "protein_name": "17-beta-hydroxysteroid dehydrogenase type 6", "gene_name": "HSD17B6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13402-1", "protein_name": "Unconventional myosin-VIIa", "gene_name": "MYO7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96NR8-1", "protein_name": "Retinol dehydrogenase 12", "gene_name": "RDH12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78363-1", "protein_name": "Retinal-specific phospholipid-transporting ATPase ABCA4", "gene_name": "ABCA4", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q92781", "url": "https://www.uniprot.org/uniprotkb/Q92781" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.9703434", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 22 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Molecular characterization of a novel short-chain dehydrogenase/reductase that reduces all-trans-retinal.", "journal": "The Journal of biological chemistry", "date": "1998", "authors": "Haeseleer F, Huang J, Lebioda L, Saari JC, Palczewski K", "reference": { "type": "PubMed", "id": "9705317", "url": "https://pubmed.ncbi.nlm.nih.gov/9705317" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q92781-1", "protein_name": "Retinol dehydrogenase 5", "gene_name": "RDH5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NBN7-1", "protein_name": "Retinol dehydrogenase 13", "gene_name": "RDH13", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75452-1", "protein_name": "Retinol dehydrogenase 16", "gene_name": "RDH16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10745-1", "protein_name": "Retinol-binding protein 3", "gene_name": "RBP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N3Y7-1", "protein_name": "Epidermal retinol dehydrogenase 2", "gene_name": "SDR16C5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HBH5-1", "protein_name": "Retinol dehydrogenase 14", "gene_name": "RDH14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12271-1", "protein_name": "Retinaldehyde-binding protein 1", "gene_name": "RLBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2A2-1", "protein_name": "2-aminomuconic semialdehyde dehydrogenase", "gene_name": "ALDH8A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42330-1", "protein_name": "Aldo-keto reductase family 1 member C3", "gene_name": "AKR1C3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75911-1", "protein_name": "Short-chain dehydrogenase/reductase 3", "gene_name": "DHRS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BPW9-1", "protein_name": "Dehydrogenase/reductase SDR family member 9", "gene_name": "DHRS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6V0L0-1", "protein_name": "Cytochrome P450 26C1", "gene_name": "CYP26C1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04000-1", "protein_name": "Long-wave-sensitive opsin 1", "gene_name": "OPN1LW", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04001-1", "protein_name": "Medium-wave-sensitive opsin 1", "gene_name": "OPN1MW2; OPN1MW", "tax_name": "Human" }, { "uniprot_canonical_ac": "P03999-1", "protein_name": "Short-wave-sensitive opsin 1", "gene_name": "OPN1SW", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TC12-1", "protein_name": "Retinol dehydrogenase 11", "gene_name": "RDH11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IZV5-1", "protein_name": "Retinol dehydrogenase 10", "gene_name": "RDH10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NR63-1", "protein_name": "Cytochrome P450 26B1", "gene_name": "CYP26B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O77769-1", "protein_name": "Short-chain dehydrogenase/reductase 3", "gene_name": "DHRS3", "tax_name": "Bovine" }, { "uniprot_canonical_ac": "O94788-1", "protein_name": "Retinal dehydrogenase 2", "gene_name": "ALDH1A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47895-1", "protein_name": "Retinaldehyde dehydrogenase 3", "gene_name": "ALDH1A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00326-1", "protein_name": "Alcohol dehydrogenase 1C", "gene_name": "ADH1C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07327-1", "protein_name": "Alcohol dehydrogenase 1A", "gene_name": "ADH1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O88876-1", "protein_name": "Short-chain dehydrogenase/reductase 3", "gene_name": "Dhrs3", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "O43174-1", "protein_name": "Cytochrome P450 26A1", "gene_name": "CYP26A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29762-1", "protein_name": "Cellular retinoic acid-binding protein 1", "gene_name": "CRABP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6E213-1", "protein_name": "Acyl-CoA wax alcohol acyltransferase 2", "gene_name": "AWAT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTZ2-1", "protein_name": "Dehydrogenase/reductase SDR family member 4", "gene_name": "DHRS4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08319-1", "protein_name": "All-trans-retinol dehydrogenase [NAD(+)] ADH4", "gene_name": "ADH4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00352-1", "protein_name": "Aldehyde dehydrogenase 1A1", "gene_name": "ALDH1A1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q92781", "url": "https://www.uniprot.org/uniprotkb/Q92781" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.9705317", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 30 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Activity of human 11-cis-retinol dehydrogenase (Rdh5) with steroids and retinoids and expression of its mRNA in extra-ocular human tissue.", "journal": "The Biochemical journal", "date": "1999", "authors": "Wang J, Chai X, Eriksson U, Napoli JL", "reference": { "type": "PubMed", "id": "9931293", "url": "https://pubmed.ncbi.nlm.nih.gov/9931293" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q92781-1", "protein_name": "Retinol dehydrogenase 5", "gene_name": "RDH5", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q92781", "url": "https://www.uniprot.org/uniprotkb/Q92781" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.9931293", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Features of TAP-independent MHC class I ligands revealed by quantitative mass spectrometry.", "journal": "European journal of immunology", "date": "2008-06", "authors": "Weinzierl Andreas O, Rudolf Despina, Hillen Nina, Tenzer Stefan, van Endert Peter, Schild Hansj\u00f6rg, Rammensee Hans-Georg, Stevanovi\u0107 Stefan", "reference": { "type": "PubMed", "id": "18446792", "url": "https://pubmed.ncbi.nlm.nih.gov/18446792" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9UNZ5-1", "protein_name": "Leydig cell tumor 10 kDa protein homolog", "gene_name": "C19orf53", "tax_name": "Human" }, { "uniprot_canonical_ac": "O76021-1", "protein_name": "Ribosomal L1 domain-containing protein 1", "gene_name": "RSL1D1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3B4-1", "protein_name": "Splicing factor 3B subunit 6", "gene_name": "SF3B6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P56192-1", "protein_name": "Methionine--tRNA ligase, cytoplasmic", "gene_name": "MARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49591-1", "protein_name": "Serine--tRNA ligase, cytoplasmic", "gene_name": "SARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NRR5-1", "protein_name": "Ubiquilin-4", "gene_name": "UBQLN4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y618-1", "protein_name": "Nuclear receptor corepressor 2", "gene_name": "NCOR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62136-1", "protein_name": "Serine/threonine-protein phosphatase PP1-alpha catalytic subunit", "gene_name": "PPP1CA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32418-1", "protein_name": "Sodium/calcium exchanger 1", "gene_name": "SLC8A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9GZT8-1", "protein_name": "NIF3-like protein 1", "gene_name": "NIF3L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30533-1", "protein_name": "Alpha-2-macroglobulin receptor-associated protein", "gene_name": "LRPAP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15144-1", "protein_name": "Actin-related protein 2/3 complex subunit 2", "gene_name": "ARPC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68036-1", "protein_name": "Ubiquitin-conjugating enzyme E2 L3", "gene_name": "UBE2L3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96RQ9-1", "protein_name": "L-amino-acid oxidase", "gene_name": "IL4I1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42766-1", "protein_name": "Large ribosomal subunit protein uL29", "gene_name": "RPL35", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15233-1", "protein_name": "Non-POU domain-containing octamer-binding protein", "gene_name": "NONO", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y696-1", "protein_name": "Chloride intracellular channel protein 4", "gene_name": "CLIC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P28340-1", "protein_name": "DNA polymerase delta catalytic subunit", "gene_name": "POLD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14181-1", "protein_name": "DNA polymerase alpha subunit B", "gene_name": "POLA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23246-1", "protein_name": "Splicing factor, proline- and glutamine-rich", "gene_name": "SFPQ", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30511-1", "protein_name": "HLA class I histocompatibility antigen, alpha chain F", "gene_name": "HLA-F", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBW8-1", "protein_name": "COP9 signalosome complex subunit 7a", "gene_name": "COPS7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07686-1", "protein_name": "Beta-hexosaminidase subunit beta", "gene_name": "HEXB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62854-1", "protein_name": "Small ribosomal subunit protein eS26", "gene_name": "RPS26", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N138-1", "protein_name": "ORM1-like protein 3", "gene_name": "ORMDL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00291-1", "protein_name": "Huntingtin-interacting protein 1", "gene_name": "HIP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P2B7-1", "protein_name": "Cilia- and flagella-associated protein 97", "gene_name": "CFAP97", "tax_name": "Human" }, { "uniprot_canonical_ac": "P54368-1", "protein_name": "Ornithine decarboxylase antizyme 1", "gene_name": "OAZ1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00151-1", "protein_name": "PDZ and LIM domain protein 1", "gene_name": "PDLIM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UH65-1", "protein_name": "Switch-associated protein 70", "gene_name": "SWAP70", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H974-1", "protein_name": "Queuine tRNA-ribosyltransferase accessory subunit 2", "gene_name": "QTRT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9GZS1-2", "protein_name": "DNA-directed RNA polymerase I subunit RPA49", "gene_name": "POLR1E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55061-1", "protein_name": "Bax inhibitor 1", "gene_name": "TMBIM6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9ULW0-1", "protein_name": "Targeting protein for Xklp2", "gene_name": "TPX2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01082-1", "protein_name": "Spectrin beta chain, non-erythrocytic 1", "gene_name": "SPTBN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19397-1", "protein_name": "Leukocyte surface antigen CD53", "gene_name": "CD53", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20591-1", "protein_name": "Interferon-induced GTP-binding protein Mx1", "gene_name": "MX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99828-1", "protein_name": "Calcium and integrin-binding protein 1", "gene_name": "CIB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43143-1", "protein_name": "ATP-dependent RNA helicase DHX15", "gene_name": "DHX15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96AB3-1", "protein_name": "Isochorismatase domain-containing protein 2", "gene_name": "ISOC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31431-1", "protein_name": "Syndecan-4", "gene_name": "SDC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14693-1", "protein_name": "Phosphatidate phosphatase LPIN1", "gene_name": "LPIN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33241-1", "protein_name": "Lymphocyte-specific protein 1", "gene_name": "LSP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15205-1", "protein_name": "Ubiquitin D", "gene_name": "UBD", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49755-1", "protein_name": "Transmembrane emp24 domain-containing protein 10", "gene_name": "TMED10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24311-1", "protein_name": "Cytochrome c oxidase subunit 7B, mitochondrial", "gene_name": "COX7B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62750-1", "protein_name": "Large ribosomal subunit protein uL23", "gene_name": "RPL23A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43148-1", "protein_name": "mRNA cap guanine-N(7) methyltransferase", "gene_name": "RNMT", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15366-1", "protein_name": "Poly(rC)-binding protein 2", "gene_name": "PCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01374-1", "protein_name": "Lymphotoxin-alpha", "gene_name": "LTA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96HT8-1", "protein_name": "MORF4 family-associated protein 1-like 1", "gene_name": "MRFAP1L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14980-1", "protein_name": "Exportin-1", "gene_name": "XPO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P43307-1", "protein_name": "Translocon-associated protein subunit alpha", "gene_name": "SSR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00767-1", "protein_name": "Stearoyl-CoA desaturase", "gene_name": "SCD", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11142-1", "protein_name": "Heat shock cognate 71 kDa protein", "gene_name": "HSPA8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15372-1", "protein_name": "Eukaryotic translation initiation factor 3 subunit H", "gene_name": "EIF3H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25705-1", "protein_name": "ATP synthase F(1) complex subunit alpha, mitochondrial", "gene_name": "ATP5F1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13077-1", "protein_name": "TNF receptor-associated factor 1", "gene_name": "TRAF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y285-1", "protein_name": "Phenylalanine--tRNA ligase alpha subunit", "gene_name": "FARSA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96GD4-1", "protein_name": "Aurora kinase B", "gene_name": "AURKB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BVP2-1", "protein_name": "Guanine nucleotide-binding protein-like 3", "gene_name": "GNL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P37802-1", "protein_name": "Transgelin-2", "gene_name": "TAGLN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07948-1", "protein_name": "Tyrosine-protein kinase Lyn", "gene_name": "LYN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78543-1", "protein_name": "Protein BTG2", "gene_name": "BTG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30260-1", "protein_name": "Cell division cycle protein 27 homolog", "gene_name": "CDC27", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29400-1", "protein_name": "Collagen alpha-5(IV) chain", "gene_name": "COL4A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92520-1", "protein_name": "Protein FAM3C", "gene_name": "FAM3C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15021-1", "protein_name": "Condensin complex subunit 1", "gene_name": "NCAPD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y678-1", "protein_name": "Coatomer subunit gamma-1", "gene_name": "COPG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14786-1", "protein_name": "Neuropilin-1", "gene_name": "NRP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29597-1", "protein_name": "Non-receptor tyrosine-protein kinase TYK2", "gene_name": "TYK2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H977-1", "protein_name": "WD repeat-containing protein 54", "gene_name": "WDR54", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BQB6-1", "protein_name": "Vitamin K epoxide reductase complex subunit 1", "gene_name": "VKORC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14511-1", "protein_name": "Enhancer of filamentation 1", "gene_name": "NEDD9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92537-1", "protein_name": "Sushi domain-containing protein 6", "gene_name": "SUSD6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P43026-1", "protein_name": "Growth/differentiation factor 5", "gene_name": "GDF5", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14787-1", "protein_name": "Transportin-2", "gene_name": "TNPO2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y679-2", "protein_name": "Lipid droplet-regulating VLDL assembly factor AUP1", "gene_name": "AUP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10809-1", "protein_name": "60 kDa heat shock protein, mitochondrial", "gene_name": "HSPD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92769-1", "protein_name": "Histone deacetylase 2", "gene_name": "HDAC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRK5-1", "protein_name": "45 kDa calcium-binding protein", "gene_name": "SDF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6V7-1", "protein_name": "Probable ATP-dependent RNA helicase DDX49", "gene_name": "DDX49", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15306-1", "protein_name": "Interferon regulatory factor 4", "gene_name": "IRF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60231-1", "protein_name": "Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16", "gene_name": "DHX16", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14141-1", "protein_name": "Septin-6", "gene_name": "SEPTIN6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15459-1", "protein_name": "Splicing factor 3A subunit 1", "gene_name": "SF3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13164-1", "protein_name": "Interferon-induced transmembrane protein 1", "gene_name": "IFITM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33992-1", "protein_name": "DNA replication licensing factor MCM5", "gene_name": "MCM5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BYX4-1", "protein_name": "Interferon-induced helicase C domain-containing protein 1", "gene_name": "IFIH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55786-1", "protein_name": "Puromycin-sensitive aminopeptidase", "gene_name": "NPEPPS", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5Z9-1", "protein_name": "UbiA prenyltransferase domain-containing protein 1", "gene_name": "UBIAD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5BJD5-1", "protein_name": "Transmembrane protein 41B", "gene_name": "TMEM41B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BSN7-1", "protein_name": "Transmembrane protein 204", "gene_name": "TMEM204", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYM9-1", "protein_name": "E3 ubiquitin-protein ligase TRIM22", "gene_name": "TRIM22", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86UX7-1", "protein_name": "Fermitin family homolog 3", "gene_name": "FERMT3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15293-1", "protein_name": "Reticulocalbin-1", "gene_name": "RCN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30279-1", "protein_name": "G1/S-specific cyclin-D2", "gene_name": "CCND2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40259-1", "protein_name": "B-cell antigen receptor complex-associated protein beta chain", "gene_name": "CD79B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NV31-1", "protein_name": "U3 small nucleolar ribonucleoprotein protein IMP3", "gene_name": "IMP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y232-1", "protein_name": "Chromodomain Y-like protein", "gene_name": "CDYL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2X8-1", "protein_name": "Ubiquitin-conjugating enzyme E2 D4", "gene_name": "UBE2D4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96T88-1", "protein_name": "E3 ubiquitin-protein ligase UHRF1", "gene_name": "UHRF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BQ04-1", "protein_name": "RNA-binding protein 4B", "gene_name": "RBM4B", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43325-1", "protein_name": "LYR motif-containing protein 1", "gene_name": "LYRM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96CX6-1", "protein_name": "Leucine-rich repeat-containing protein 58", "gene_name": "LRRC58", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62328-1", "protein_name": "Thymosin beta-4", "gene_name": "TMSB4X", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z401-1", "protein_name": "C-myc promoter-binding protein", "gene_name": "DENND4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75367-2", "protein_name": "Core histone macro-H2A.1", "gene_name": "MACROH2A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14625-1", "protein_name": "Endoplasmin", "gene_name": "HSP90B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04818-1", "protein_name": "Thymidylate synthase", "gene_name": "TYMS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05067-1", "protein_name": "Amyloid-beta precursor protein", "gene_name": "APP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61289-1", "protein_name": "Proteasome activator complex subunit 3", "gene_name": "PSME3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99683-1", "protein_name": "Mitogen-activated protein kinase kinase kinase 5", "gene_name": "MAP3K5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63244-1", "protein_name": "Small ribosomal subunit protein RACK1", "gene_name": "RACK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99685-1", "protein_name": "Monoglyceride lipase", "gene_name": "MGLL", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9UNZ5", "url": "https://www.uniprot.org/uniprotkb/Q9UNZ5" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.18446792", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 115 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Characterization of the peptide binding specificity of the HLA class I alleles B*38:01 and B*39:06.", "journal": "Immunogenetics", "date": "2016-03", "authors": "Sidney John, Schloss Jennifer, Moore Carrie, Lindvall Mikaela, Wriston Amanda, Hunt Donald F, Shabanowitz Jeffrey, DiLorenzo Teresa P, Sette Alessandro", "reference": { "type": "PubMed", "id": "26754738", "url": "https://pubmed.ncbi.nlm.nih.gov/26754738" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9UNZ5-1", "protein_name": "Leydig cell tumor 10 kDa protein homolog", "gene_name": "C19orf53", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13043-1", "protein_name": "Serine/threonine-protein kinase 4", "gene_name": "STK4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P0P0-1", "protein_name": "E3 ubiquitin-protein ligase RNF181", "gene_name": "RNF181", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01082-1", "protein_name": "Spectrin beta chain, non-erythrocytic 1", "gene_name": "SPTBN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43242-1", "protein_name": "26S proteasome non-ATPase regulatory subunit 3", "gene_name": "PSMD3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95926-1", "protein_name": "Pre-mRNA-splicing factor SYF2", "gene_name": "SYF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96GW9-1", "protein_name": "Methionine--tRNA ligase, mitochondrial", "gene_name": "MARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96GN5-1", "protein_name": "Cell division cycle-associated 7-like protein", "gene_name": "CDCA7L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IUI8-1", "protein_name": "Cytokine receptor-like factor 3", "gene_name": "CRLF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPA8-1", "protein_name": "Transcription and mRNA export factor ENY2", "gene_name": "ENY2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9GZR7-1", "protein_name": "ATP-dependent RNA helicase DDX24", "gene_name": "DDX24", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NX02-1", "protein_name": "NACHT, LRR and PYD domains-containing protein 2", "gene_name": "NLRP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86Y39-1", "protein_name": "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 11", "gene_name": "NDUFA11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15155-1", "protein_name": "BOS complex subunit NOMO1", "gene_name": "NOMO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2TB10-1", "protein_name": "Zinc finger protein 800", "gene_name": "ZNF800", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96PU4-1", "protein_name": "E3 ubiquitin-protein ligase UHRF2", "gene_name": "UHRF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HAW4-1", "protein_name": "Claspin", "gene_name": "CLSPN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52306-1", "protein_name": "Rap1 GTPase-GDP dissociation stimulator 1", "gene_name": "RAP1GDS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22692-1", "protein_name": "Insulin-like growth factor-binding protein 4", "gene_name": "IGFBP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3F4-1", "protein_name": "Serine-threonine kinase receptor-associated protein", "gene_name": "STRAP", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9UNZ5", "url": "https://www.uniprot.org/uniprotkb/Q9UNZ5" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.26754738", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 20 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "DNAJA2 and Hero11 mediate similar conformational extension and aggregation suppression of TDP-43.", "journal": "RNA (New York, N.Y.)", "date": "2024-10-16", "authors": "Lam Andy Y W, Tsuboyama Kotaro, Tadakuma Hisashi, Tomari Yukihide", "reference": { "type": "PubMed", "id": "39117455", "url": "https://pubmed.ncbi.nlm.nih.gov/39117455" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9UNZ5-1", "protein_name": "Leydig cell tumor 10 kDa protein homolog", "gene_name": "C19orf53", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60884-1", "protein_name": "DnaJ homolog subfamily A member 2", "gene_name": "DNAJA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13148-1", "protein_name": "TAR DNA-binding protein 43", "gene_name": "TARDBP", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9UNZ5", "url": "https://www.uniprot.org/uniprotkb/Q9UNZ5" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.39117455", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The eukaryotic polypeptide chain releasing factor (eRF3/GSPT) carrying the translation termination signal to the 3'-Poly(A) tail of mRNA. Direct association of erf3/GSPT with polyadenylate-binding protein.", "journal": "The Journal of biological chemistry", "date": "1999", "authors": "Hoshino S, Imai M, Kobayashi T, Uchida N, Katada T", "reference": { "type": "PubMed", "id": "10358005", "url": "https://pubmed.ncbi.nlm.nih.gov/10358005" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P18621-1", "protein_name": "Large ribosomal subunit protein uL22", "gene_name": "RPL17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46776-1", "protein_name": "Large ribosomal subunit protein uL15", "gene_name": "RPL27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46782-1", "protein_name": "Small ribosomal subunit protein uS7", "gene_name": "RPS5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47914-1", "protein_name": "Large ribosomal subunit protein eL29", "gene_name": "RPL29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62244-1", "protein_name": "Small ribosomal subunit protein uS8", "gene_name": "RPS15A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22090-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 1", "gene_name": "RPS4Y1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P5R6-1", "protein_name": "Ribosomal protein eL22-like", "gene_name": "RPL22L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08708-1", "protein_name": "Small ribosomal subunit protein eS17", "gene_name": "RPS17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46783-1", "protein_name": "Small ribosomal subunit protein eS10", "gene_name": "RPS10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62917-1", "protein_name": "Large ribosomal subunit protein uL2", "gene_name": "RPL8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25398-1", "protein_name": "Small ribosomal subunit protein eS12", "gene_name": "RPS12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46781-1", "protein_name": "Small ribosomal subunit protein uS4", "gene_name": "RPS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62424-1", "protein_name": "Large ribosomal subunit protein eL8", "gene_name": "RPL7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62701-1", "protein_name": "Small ribosomal subunit protein eS4, X isoform", "gene_name": "RPS4X", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63220-1", "protein_name": "Small ribosomal subunit protein eS21", "gene_name": "RPS21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TD47-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 2", "gene_name": "RPS4Y2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UI30-1", "protein_name": "Multifunctional methyltransferase subunit TRM112-like protein", "gene_name": "TRMT112", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07020-1", "protein_name": "Large ribosomal subunit protein eL18", "gene_name": "RPL18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35268-1", "protein_name": "Large ribosomal subunit protein eL22", "gene_name": "RPL22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83881-1", "protein_name": "Large ribosomal subunit protein eL42", "gene_name": "RPL36A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61353-1", "protein_name": "Large ribosomal subunit protein eL27", "gene_name": "RPL27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNX3-1", "protein_name": "Ribosomal protein uL24-like", "gene_name": "RPL26L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02543-1", "protein_name": "Large ribosomal subunit protein eL20", "gene_name": "RPL18A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40429-1", "protein_name": "Large ribosomal subunit protein uL13", "gene_name": "RPL13A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63173-1", "protein_name": "Large ribosomal subunit protein eL38", "gene_name": "RPL38", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62910-1", "protein_name": "Large ribosomal subunit protein eL32", "gene_name": "RPL32", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39023-1", "protein_name": "Large ribosomal subunit protein uL3", "gene_name": "RPL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18077-1", "protein_name": "Large ribosomal subunit protein eL33", "gene_name": "RPL35A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61254-1", "protein_name": "Large ribosomal subunit protein uL24", "gene_name": "RPL26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84098-1", "protein_name": "Large ribosomal subunit protein eL19", "gene_name": "RPL19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62888-1", "protein_name": "Large ribosomal subunit protein eL30", "gene_name": "RPL30", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83731-1", "protein_name": "Large ribosomal subunit protein eL24", "gene_name": "RPL24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62899-1", "protein_name": "Large ribosomal subunit protein eL31", "gene_name": "RPL31", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62945-1", "protein_name": "Small ribosomal subunit protein eS32", "gene_name": "RPL41", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61927-1", "protein_name": "Large ribosomal subunit protein eL37", "gene_name": "RPL37", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42766-1", "protein_name": "Large ribosomal subunit protein uL29", "gene_name": "RPL35", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05387-1", "protein_name": "Large ribosomal subunit protein P2", "gene_name": "RPLP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92901-1", "protein_name": "Ribosomal protein uL3-like", "gene_name": "RPL3L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46778-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "RPL21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05386-1", "protein_name": "Large ribosomal subunit protein P1", "gene_name": "RPLP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49207-1", "protein_name": "Large ribosomal subunit protein eL34", "gene_name": "RPL34", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62891-1", "protein_name": "Large ribosomal subunit protein eL39", "gene_name": "RPL39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96L21-1", "protein_name": "Ribosomal protein uL16-like", "gene_name": "RPL10L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26373-1", "protein_name": "Large ribosomal subunit protein eL13", "gene_name": "RPL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYD1-1", "protein_name": "Eukaryotic peptide chain release factor GTP-binding subunit ERF3B", "gene_name": "GSPT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60866-1", "protein_name": "Small ribosomal subunit protein uS10", "gene_name": "RPS20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969Q0-1", "protein_name": "Ribosomal protein eL42-like", "gene_name": "RPL36AL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61247-1", "protein_name": "Small ribosomal subunit protein eS1", "gene_name": "RPS3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62854-1", "protein_name": "Small ribosomal subunit protein eS26", "gene_name": "RPS26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62851-1", "protein_name": "Small ribosomal subunit protein eS25", "gene_name": "RPS25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08865-1", "protein_name": "Small ribosomal subunit protein uS2", "gene_name": "RPSA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62847-1", "protein_name": "Small ribosomal subunit protein eS24", "gene_name": "RPS24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62861-1", "protein_name": "Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein", "gene_name": "FAU", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62241-1", "protein_name": "Small ribosomal subunit protein eS8", "gene_name": "RPS8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62277-1", "protein_name": "Small ribosomal subunit protein uS15", "gene_name": "RPS13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39019-1", "protein_name": "Small ribosomal subunit protein eS19", "gene_name": "RPS19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62269-1", "protein_name": "Small ribosomal subunit protein uS13", "gene_name": "RPS18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02878-1", "protein_name": "Large ribosomal subunit protein eL6", "gene_name": "RPL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62273-1", "protein_name": "Small ribosomal subunit protein uS14", "gene_name": "RPS29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42677-1", "protein_name": "Small ribosomal subunit protein eS27", "gene_name": "RPS27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EH5-1", "protein_name": "Ribosomal protein eL39-like 2", "gene_name": "RPL39L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62263-1", "protein_name": "Small ribosomal subunit protein uS11", "gene_name": "RPS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61513-1", "protein_name": "Large ribosomal subunit protein eL43", "gene_name": "RPL37A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18124-1", "protein_name": "Large ribosomal subunit protein uL30", "gene_name": "RPL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15880-1", "protein_name": "Small ribosomal subunit protein uS5", "gene_name": "RPS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62750-1", "protein_name": "Large ribosomal subunit protein uL23", "gene_name": "RPL23A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62280-1", "protein_name": "Small ribosomal subunit protein uS17", "gene_name": "RPS11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62249-1", "protein_name": "Small ribosomal subunit protein uS9", "gene_name": "RPS16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50914-1", "protein_name": "Large ribosomal subunit protein eL14", "gene_name": "RPL14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62906-1", "protein_name": "Large ribosomal subunit protein uL1", "gene_name": "RPL10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23396-1", "protein_name": "Small ribosomal subunit protein uS3", "gene_name": "RPS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62841-1", "protein_name": "Small ribosomal subunit protein uS19", "gene_name": "RPS15", "tax_name": "Human" }, { "uniprot_canonical_ac": "C0HME6-1", "protein_name": "RPL36 alternative reading frame protein", "gene_name": "RPL36", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62829-1", "protein_name": "Large ribosomal subunit protein uL14", "gene_name": "RPL23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32969-1", "protein_name": "Large ribosomal subunit protein uL6", "gene_name": "RPL9P7; RPL9P8; RPL9P9; RPL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30050-1", "protein_name": "Large ribosomal subunit protein uL11", "gene_name": "RPL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62266-1", "protein_name": "Small ribosomal subunit protein uS12", "gene_name": "RPS23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46777-1", "protein_name": "Large ribosomal subunit protein uL18", "gene_name": "RPL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62753-1", "protein_name": "Small ribosomal subunit protein eS6", "gene_name": "RPS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27635-1", "protein_name": "Large ribosomal subunit protein uL16", "gene_name": "RPL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62913-1", "protein_name": "Large ribosomal subunit protein uL5", "gene_name": "RPL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36578-1", "protein_name": "Large ribosomal subunit protein uL4", "gene_name": "RPL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05388-1", "protein_name": "Large ribosomal subunit protein uL10", "gene_name": "RPLP0", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46779-1", "protein_name": "Large ribosomal subunit protein eL28", "gene_name": "RPL28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62857-1", "protein_name": "Small ribosomal subunit protein eS28", "gene_name": "RPS28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15170-1", "protein_name": "Eukaryotic peptide chain release factor GTP-binding subunit ERF3A", "gene_name": "GSPT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62495-1", "protein_name": "Eukaryotic peptide chain release factor subunit 1", "gene_name": "ETF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5N5-1", "protein_name": "Methyltransferase HEMK2", "gene_name": "HEMK2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61313-1", "protein_name": "Large ribosomal subunit protein eL15", "gene_name": "RPL15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62081-1", "protein_name": "Small ribosomal subunit protein eS7", "gene_name": "RPS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71UM5-1", "protein_name": "Ribosomal protein eS27-like", "gene_name": "RPS27L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13798-1", "protein_name": "Acylamino-acid-releasing enzyme", "gene_name": "APEH", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P18621", "url": "https://www.uniprot.org/uniprotkb/P18621" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.10358005", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 94 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The HLA-A*6601 peptide motif: prediction by pocket structure and verification by peptide analysis.", "journal": "Immunogenetics", "date": "1999-06", "authors": "Seeger F H, Schirle M, Gatfield J, Arnold D, Keilholz W, Nickolaus P, Rammensee H G, Stevanovi\u0107 S", "reference": { "type": "PubMed", "id": "10380706", "url": "https://pubmed.ncbi.nlm.nih.gov/10380706" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P18621-1", "protein_name": "Large ribosomal subunit protein uL22", "gene_name": "RPL17", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07352-1", "protein_name": "mRNA decay activator protein ZFP36L1", "gene_name": "ZFP36L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61247-1", "protein_name": "Small ribosomal subunit protein eS1", "gene_name": "RPS3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49721-1", "protein_name": "Proteasome subunit beta type-2", "gene_name": "PSMB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23396-1", "protein_name": "Small ribosomal subunit protein uS3", "gene_name": "RPS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52292-1", "protein_name": "Importin subunit alpha-1", "gene_name": "KPNA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00403-1", "protein_name": "Cytochrome c oxidase subunit 2", "gene_name": "MT-CO2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78347-1", "protein_name": "General transcription factor II-I", "gene_name": "GTF2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5U8-1", "protein_name": "Mitochondrial pyruvate carrier 1", "gene_name": "MPC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30279-1", "protein_name": "G1/S-specific cyclin-D2", "gene_name": "CCND2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13639-1", "protein_name": "Elongation factor 2", "gene_name": "EEF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22626-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins A2/B1", "gene_name": "HNRNPA2B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62081-1", "protein_name": "Small ribosomal subunit protein eS7", "gene_name": "RPS7", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P18621", "url": "https://www.uniprot.org/uniprotkb/P18621" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.10380706", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 13 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Characterization of mSelB, a novel mammalian elongation factor for selenoprotein translation.", "journal": "The EMBO journal", "date": "2000", "authors": "Fagegaltier D, Hubert N, Yamada K, Mizutani T, Carbon P, Krol A", "reference": { "type": "PubMed", "id": "10970870", "url": "https://pubmed.ncbi.nlm.nih.gov/10970870" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P18621-1", "protein_name": "Large ribosomal subunit protein uL22", "gene_name": "RPL17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46776-1", "protein_name": "Large ribosomal subunit protein uL15", "gene_name": "RPL27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46782-1", "protein_name": "Small ribosomal subunit protein uS7", "gene_name": "RPS5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57772-1", "protein_name": "Selenocysteine-specific elongation factor", "gene_name": "EEFSEC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47914-1", "protein_name": "Large ribosomal subunit protein eL29", "gene_name": "RPL29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62244-1", "protein_name": "Small ribosomal subunit protein uS8", "gene_name": "RPS15A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22090-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 1", "gene_name": "RPS4Y1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P5R6-1", "protein_name": "Ribosomal protein eL22-like", "gene_name": "RPL22L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08708-1", "protein_name": "Small ribosomal subunit protein eS17", "gene_name": "RPS17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46783-1", "protein_name": "Small ribosomal subunit protein eS10", "gene_name": "RPS10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62917-1", "protein_name": "Large ribosomal subunit protein uL2", "gene_name": "RPL8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25398-1", "protein_name": "Small ribosomal subunit protein eS12", "gene_name": "RPS12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46781-1", "protein_name": "Small ribosomal subunit protein uS4", "gene_name": "RPS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62424-1", "protein_name": "Large ribosomal subunit protein eL8", "gene_name": "RPL7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62701-1", "protein_name": "Small ribosomal subunit protein eS4, X isoform", "gene_name": "RPS4X", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63220-1", "protein_name": "Small ribosomal subunit protein eS21", "gene_name": "RPS21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TD47-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 2", "gene_name": "RPS4Y2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49591-1", "protein_name": "Serine--tRNA ligase, cytoplasmic", "gene_name": "SARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07020-1", "protein_name": "Large ribosomal subunit protein eL18", "gene_name": "RPL18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35268-1", "protein_name": "Large ribosomal subunit protein eL22", "gene_name": "RPL22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83881-1", "protein_name": "Large ribosomal subunit protein eL42", "gene_name": "RPL36A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61353-1", "protein_name": "Large ribosomal subunit protein eL27", "gene_name": "RPL27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNX3-1", "protein_name": "Ribosomal protein uL24-like", "gene_name": "RPL26L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02543-1", "protein_name": "Large ribosomal subunit protein eL20", "gene_name": "RPL18A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40429-1", "protein_name": "Large ribosomal subunit protein uL13", "gene_name": "RPL13A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63173-1", "protein_name": "Large ribosomal subunit protein eL38", "gene_name": "RPL38", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62910-1", "protein_name": "Large ribosomal subunit protein eL32", "gene_name": "RPL32", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39023-1", "protein_name": "Large ribosomal subunit protein uL3", "gene_name": "RPL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18077-1", "protein_name": "Large ribosomal subunit protein eL33", "gene_name": "RPL35A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61254-1", "protein_name": "Large ribosomal subunit protein uL24", "gene_name": "RPL26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84098-1", "protein_name": "Large ribosomal subunit protein eL19", "gene_name": "RPL19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62888-1", "protein_name": "Large ribosomal subunit protein eL30", "gene_name": "RPL30", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83731-1", "protein_name": "Large ribosomal subunit protein eL24", "gene_name": "RPL24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62899-1", "protein_name": "Large ribosomal subunit protein eL31", "gene_name": "RPL31", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62945-1", "protein_name": "Small ribosomal subunit protein eS32", "gene_name": "RPL41", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61927-1", "protein_name": "Large ribosomal subunit protein eL37", "gene_name": "RPL37", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42766-1", "protein_name": "Large ribosomal subunit protein uL29", "gene_name": "RPL35", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05387-1", "protein_name": "Large ribosomal subunit protein P2", "gene_name": "RPLP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92901-1", "protein_name": "Ribosomal protein uL3-like", "gene_name": "RPL3L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46778-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "RPL21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05386-1", "protein_name": "Large ribosomal subunit protein P1", "gene_name": "RPLP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49207-1", "protein_name": "Large ribosomal subunit protein eL34", "gene_name": "RPL34", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62891-1", "protein_name": "Large ribosomal subunit protein eL39", "gene_name": "RPL39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96L21-1", "protein_name": "Ribosomal protein uL16-like", "gene_name": "RPL10L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26373-1", "protein_name": "Large ribosomal subunit protein eL13", "gene_name": "RPL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60866-1", "protein_name": "Small ribosomal subunit protein uS10", "gene_name": "RPS20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96T21-1", "protein_name": "Selenocysteine insertion sequence-binding protein 2", "gene_name": "SECISBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969Q0-1", "protein_name": "Ribosomal protein eL42-like", "gene_name": "RPL36AL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61247-1", "protein_name": "Small ribosomal subunit protein eS1", "gene_name": "RPS3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62854-1", "protein_name": "Small ribosomal subunit protein eS26", "gene_name": "RPS26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62851-1", "protein_name": "Small ribosomal subunit protein eS25", "gene_name": "RPS25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08865-1", "protein_name": "Small ribosomal subunit protein uS2", "gene_name": "RPSA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62847-1", "protein_name": "Small ribosomal subunit protein eS24", "gene_name": "RPS24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62861-1", "protein_name": "Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein", "gene_name": "FAU", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62241-1", "protein_name": "Small ribosomal subunit protein eS8", "gene_name": "RPS8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62277-1", "protein_name": "Small ribosomal subunit protein uS15", "gene_name": "RPS13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39019-1", "protein_name": "Small ribosomal subunit protein eS19", "gene_name": "RPS19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62269-1", "protein_name": "Small ribosomal subunit protein uS13", "gene_name": "RPS18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02878-1", "protein_name": "Large ribosomal subunit protein eL6", "gene_name": "RPL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62273-1", "protein_name": "Small ribosomal subunit protein uS14", "gene_name": "RPS29", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HD40-1", "protein_name": "O-phosphoseryl-tRNA(Sec) selenium transferase", "gene_name": "SEPSECS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42677-1", "protein_name": "Small ribosomal subunit protein eS27", "gene_name": "RPS27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EH5-1", "protein_name": "Ribosomal protein eL39-like 2", "gene_name": "RPL39L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62263-1", "protein_name": "Small ribosomal subunit protein uS11", "gene_name": "RPS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61513-1", "protein_name": "Large ribosomal subunit protein eL43", "gene_name": "RPL37A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18124-1", "protein_name": "Large ribosomal subunit protein uL30", "gene_name": "RPL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15880-1", "protein_name": "Small ribosomal subunit protein uS5", "gene_name": "RPS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62750-1", "protein_name": "Large ribosomal subunit protein uL23", "gene_name": "RPL23A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62280-1", "protein_name": "Small ribosomal subunit protein uS17", "gene_name": "RPS11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62249-1", "protein_name": "Small ribosomal subunit protein uS9", "gene_name": "RPS16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50914-1", "protein_name": "Large ribosomal subunit protein eL14", "gene_name": "RPL14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62906-1", "protein_name": "Large ribosomal subunit protein uL1", "gene_name": "RPL10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23396-1", "protein_name": "Small ribosomal subunit protein uS3", "gene_name": "RPS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62841-1", "protein_name": "Small ribosomal subunit protein uS19", "gene_name": "RPS15", "tax_name": "Human" }, { "uniprot_canonical_ac": "C0HME6-1", "protein_name": "RPL36 alternative reading frame protein", "gene_name": "RPL36", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62829-1", "protein_name": "Large ribosomal subunit protein uL14", "gene_name": "RPL23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32969-1", "protein_name": "Large ribosomal subunit protein uL6", "gene_name": "RPL9P7; RPL9P8; RPL9P9; RPL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30050-1", "protein_name": "Large ribosomal subunit protein uL11", "gene_name": "RPL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62266-1", "protein_name": "Small ribosomal subunit protein uS12", "gene_name": "RPS23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46777-1", "protein_name": "Large ribosomal subunit protein uL18", "gene_name": "RPL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62753-1", "protein_name": "Small ribosomal subunit protein eS6", "gene_name": "RPS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99611-1", "protein_name": "Selenide, water dikinase 2", "gene_name": "SEPHS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IV42-1", "protein_name": "L-seryl-tRNA(Sec) kinase", "gene_name": "PSTK", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27635-1", "protein_name": "Large ribosomal subunit protein uL16", "gene_name": "RPL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62913-1", "protein_name": "Large ribosomal subunit protein uL5", "gene_name": "RPL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36578-1", "protein_name": "Large ribosomal subunit protein uL4", "gene_name": "RPL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05388-1", "protein_name": "Large ribosomal subunit protein uL10", "gene_name": "RPLP0", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46779-1", "protein_name": "Large ribosomal subunit protein eL28", "gene_name": "RPL28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62857-1", "protein_name": "Small ribosomal subunit protein eS28", "gene_name": "RPS28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61313-1", "protein_name": "Large ribosomal subunit protein eL15", "gene_name": "RPL15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62081-1", "protein_name": "Small ribosomal subunit protein eS7", "gene_name": "RPS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71UM5-1", "protein_name": "Ribosomal protein eS27-like", "gene_name": "RPS27L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9JHW4-1", "protein_name": "Selenocysteine-specific elongation factor", "gene_name": "Eefsec", "tax_name": "Mouse" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P18621", "url": "https://www.uniprot.org/uniprotkb/P18621" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.10970870", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 95 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Amino acids control mammalian gene transcription: activating transcription factor 2 is essential for the amino acid responsiveness of the CHOP promoter.", "journal": "Molecular and cellular biology", "date": "2000", "authors": "Bruhat A, Jousse C, Carraro V, Reimold AM, Ferrara M, Fafournoux P", "reference": { "type": "PubMed", "id": "10982836", "url": "https://pubmed.ncbi.nlm.nih.gov/10982836" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P18621-1", "protein_name": "Large ribosomal subunit protein uL22", "gene_name": "RPL17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46776-1", "protein_name": "Large ribosomal subunit protein uL15", "gene_name": "RPL27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46782-1", "protein_name": "Small ribosomal subunit protein uS7", "gene_name": "RPS5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47914-1", "protein_name": "Large ribosomal subunit protein eL29", "gene_name": "RPL29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62244-1", "protein_name": "Small ribosomal subunit protein uS8", "gene_name": "RPS15A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22090-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 1", "gene_name": "RPS4Y1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P5R6-1", "protein_name": "Ribosomal protein eL22-like", "gene_name": "RPL22L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08708-1", "protein_name": "Small ribosomal subunit protein eS17", "gene_name": "RPS17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46783-1", "protein_name": "Small ribosomal subunit protein eS10", "gene_name": "RPS10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62917-1", "protein_name": "Large ribosomal subunit protein uL2", "gene_name": "RPL8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25398-1", "protein_name": "Small ribosomal subunit protein eS12", "gene_name": "RPS12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46781-1", "protein_name": "Small ribosomal subunit protein uS4", "gene_name": "RPS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62424-1", "protein_name": "Large ribosomal subunit protein eL8", "gene_name": "RPL7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62701-1", "protein_name": "Small ribosomal subunit protein eS4, X isoform", "gene_name": "RPS4X", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63220-1", "protein_name": "Small ribosomal subunit protein eS21", "gene_name": "RPS21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TD47-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 2", "gene_name": "RPS4Y2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96RU7-1", "protein_name": "Tribbles homolog 3", "gene_name": "TRIB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08243-1", "protein_name": "Asparagine synthetase [glutamine-hydrolyzing]", "gene_name": "ASNS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53567-1", "protein_name": "CCAAT/enhancer-binding protein gamma", "gene_name": "CEBPG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18847-1", "protein_name": "Cyclic AMP-dependent transcription factor ATF-3", "gene_name": "ATF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35638-1", "protein_name": "DNA damage-inducible transcript 3 protein", "gene_name": "DDIT3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15336-1", "protein_name": "Cyclic AMP-dependent transcription factor ATF-2", "gene_name": "ATF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18848-1", "protein_name": "Cyclic AMP-dependent transcription factor ATF-4", "gene_name": "ATF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07020-1", "protein_name": "Large ribosomal subunit protein eL18", "gene_name": "RPL18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35268-1", "protein_name": "Large ribosomal subunit protein eL22", "gene_name": "RPL22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83881-1", "protein_name": "Large ribosomal subunit protein eL42", "gene_name": "RPL36A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61353-1", "protein_name": "Large ribosomal subunit protein eL27", "gene_name": "RPL27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNX3-1", "protein_name": "Ribosomal protein uL24-like", "gene_name": "RPL26L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02543-1", "protein_name": "Large ribosomal subunit protein eL20", "gene_name": "RPL18A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40429-1", "protein_name": "Large ribosomal subunit protein uL13", "gene_name": "RPL13A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63173-1", "protein_name": "Large ribosomal subunit protein eL38", "gene_name": "RPL38", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62910-1", "protein_name": "Large ribosomal subunit protein eL32", "gene_name": "RPL32", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39023-1", "protein_name": "Large ribosomal subunit protein uL3", "gene_name": "RPL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18077-1", "protein_name": "Large ribosomal subunit protein eL33", "gene_name": "RPL35A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61254-1", "protein_name": "Large ribosomal subunit protein uL24", "gene_name": "RPL26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84098-1", "protein_name": "Large ribosomal subunit protein eL19", "gene_name": "RPL19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62888-1", "protein_name": "Large ribosomal subunit protein eL30", "gene_name": "RPL30", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83731-1", "protein_name": "Large ribosomal subunit protein eL24", "gene_name": "RPL24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62899-1", "protein_name": "Large ribosomal subunit protein eL31", "gene_name": "RPL31", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62945-1", "protein_name": "Small ribosomal subunit protein eS32", "gene_name": "RPL41", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61927-1", "protein_name": "Large ribosomal subunit protein eL37", "gene_name": "RPL37", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42766-1", "protein_name": "Large ribosomal subunit protein uL29", "gene_name": "RPL35", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05387-1", "protein_name": "Large ribosomal subunit protein P2", "gene_name": "RPLP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92901-1", "protein_name": "Ribosomal protein uL3-like", "gene_name": "RPL3L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46778-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "RPL21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05386-1", "protein_name": "Large ribosomal subunit protein P1", "gene_name": "RPLP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49207-1", "protein_name": "Large ribosomal subunit protein eL34", "gene_name": "RPL34", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62891-1", "protein_name": "Large ribosomal subunit protein eL39", "gene_name": "RPL39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96L21-1", "protein_name": "Ribosomal protein uL16-like", "gene_name": "RPL10L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26373-1", "protein_name": "Large ribosomal subunit protein eL13", "gene_name": "RPL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60866-1", "protein_name": "Small ribosomal subunit protein uS10", "gene_name": "RPS20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969Q0-1", "protein_name": "Ribosomal protein eL42-like", "gene_name": "RPL36AL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61247-1", "protein_name": "Small ribosomal subunit protein eS1", "gene_name": "RPS3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P2X3-1", "protein_name": "Protein IMPACT", "gene_name": "IMPACT", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62854-1", "protein_name": "Small ribosomal subunit protein eS26", "gene_name": "RPS26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62851-1", "protein_name": "Small ribosomal subunit protein eS25", "gene_name": "RPS25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08865-1", "protein_name": "Small ribosomal subunit protein uS2", "gene_name": "RPSA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62847-1", "protein_name": "Small ribosomal subunit protein eS24", "gene_name": "RPS24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62861-1", "protein_name": "Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein", "gene_name": "FAU", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62241-1", "protein_name": "Small ribosomal subunit protein eS8", "gene_name": "RPS8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUX1-1", "protein_name": "Glutathione-specific gamma-glutamylcyclotransferase 1", "gene_name": "CHAC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62277-1", "protein_name": "Small ribosomal subunit protein uS15", "gene_name": "RPS13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39019-1", "protein_name": "Small ribosomal subunit protein eS19", "gene_name": "RPS19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62269-1", "protein_name": "Small ribosomal subunit protein uS13", "gene_name": "RPS18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02878-1", "protein_name": "Large ribosomal subunit protein eL6", "gene_name": "RPL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62273-1", "protein_name": "Small ribosomal subunit protein uS14", "gene_name": "RPS29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17676-1", "protein_name": "CCAAT/enhancer-binding protein beta", "gene_name": "CEBPB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20042-1", "protein_name": "Eukaryotic translation initiation factor 2 subunit 2", "gene_name": "EIF2S2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2D1-1", "protein_name": "Cyclic AMP-dependent transcription factor ATF-5", "gene_name": "ATF5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42677-1", "protein_name": "Small ribosomal subunit protein eS27", "gene_name": "RPS27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EH5-1", "protein_name": "Ribosomal protein eL39-like 2", "gene_name": "RPL39L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62263-1", "protein_name": "Small ribosomal subunit protein uS11", "gene_name": "RPS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61513-1", "protein_name": "Large ribosomal subunit protein eL43", "gene_name": "RPL37A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18124-1", "protein_name": "Large ribosomal subunit protein uL30", "gene_name": "RPL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75807-1", "protein_name": "Protein phosphatase 1 regulatory subunit 15A", "gene_name": "PPP1R15A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15880-1", "protein_name": "Small ribosomal subunit protein uS5", "gene_name": "RPS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62750-1", "protein_name": "Large ribosomal subunit protein uL23", "gene_name": "RPL23A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62280-1", "protein_name": "Small ribosomal subunit protein uS17", "gene_name": "RPS11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62249-1", "protein_name": "Small ribosomal subunit protein uS9", "gene_name": "RPS16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50914-1", "protein_name": "Large ribosomal subunit protein eL14", "gene_name": "RPL14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62906-1", "protein_name": "Large ribosomal subunit protein uL1", "gene_name": "RPL10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23396-1", "protein_name": "Small ribosomal subunit protein uS3", "gene_name": "RPS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05198-1", "protein_name": "Eukaryotic translation initiation factor 2 subunit 1", "gene_name": "EIF2S1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62841-1", "protein_name": "Small ribosomal subunit protein uS19", "gene_name": "RPS15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92616-1", "protein_name": "Stalled ribosome sensor GCN1", "gene_name": "GCN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "C0HME6-1", "protein_name": "RPL36 alternative reading frame protein", "gene_name": "RPL36", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62829-1", "protein_name": "Large ribosomal subunit protein uL14", "gene_name": "RPL23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32969-1", "protein_name": "Large ribosomal subunit protein uL6", "gene_name": "RPL9P7; RPL9P8; RPL9P9; RPL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30050-1", "protein_name": "Large ribosomal subunit protein uL11", "gene_name": "RPL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62266-1", "protein_name": "Small ribosomal subunit protein uS12", "gene_name": "RPS23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46777-1", "protein_name": "Large ribosomal subunit protein uL18", "gene_name": "RPL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P2K8-1", "protein_name": "eIF-2-alpha kinase GCN2", "gene_name": "EIF2AK4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BQI3-1", "protein_name": "Eukaryotic translation initiation factor 2-alpha kinase 1", "gene_name": "EIF2AK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41091-1", "protein_name": "Eukaryotic translation initiation factor 2 subunit 3", "gene_name": "EIF2S3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62753-1", "protein_name": "Small ribosomal subunit protein eS6", "gene_name": "RPS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27635-1", "protein_name": "Large ribosomal subunit protein uL16", "gene_name": "RPL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62913-1", "protein_name": "Large ribosomal subunit protein uL5", "gene_name": "RPL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36578-1", "protein_name": "Large ribosomal subunit protein uL4", "gene_name": "RPL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05388-1", "protein_name": "Large ribosomal subunit protein uL10", "gene_name": "RPLP0", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46779-1", "protein_name": "Large ribosomal subunit protein eL28", "gene_name": "RPL28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62857-1", "protein_name": "Small ribosomal subunit protein eS28", "gene_name": "RPS28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61313-1", "protein_name": "Large ribosomal subunit protein eL15", "gene_name": "RPL15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62081-1", "protein_name": "Small ribosomal subunit protein eS7", "gene_name": "RPS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71UM5-1", "protein_name": "Ribosomal protein eS27-like", "gene_name": "RPS27L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13322-1", "protein_name": "Growth factor receptor-bound protein 10", "gene_name": "GRB10", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P18621", "url": "https://www.uniprot.org/uniprotkb/P18621" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.10982836", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 107 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Crystal structure of the CCAAT box/enhancer-binding protein beta activating transcription factor-4 basic leucine zipper heterodimer in the absence of DNA.", "journal": "The Journal of biological chemistry", "date": "2001", "authors": "Podust LM, Krezel AM, Kim Y", "reference": { "type": "PubMed", "id": "11018027", "url": "https://pubmed.ncbi.nlm.nih.gov/11018027" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P18621-1", "protein_name": "Large ribosomal subunit protein uL22", "gene_name": "RPL17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46776-1", "protein_name": "Large ribosomal subunit protein uL15", "gene_name": "RPL27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46782-1", "protein_name": "Small ribosomal subunit protein uS7", "gene_name": "RPS5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47914-1", "protein_name": "Large ribosomal subunit protein eL29", "gene_name": "RPL29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62244-1", "protein_name": "Small ribosomal subunit protein uS8", "gene_name": "RPS15A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22090-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 1", "gene_name": "RPS4Y1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P5R6-1", "protein_name": "Ribosomal protein eL22-like", "gene_name": "RPL22L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08708-1", "protein_name": "Small ribosomal subunit protein eS17", "gene_name": "RPS17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46783-1", "protein_name": "Small ribosomal subunit protein eS10", "gene_name": "RPS10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62917-1", "protein_name": "Large ribosomal subunit protein uL2", "gene_name": "RPL8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25398-1", "protein_name": "Small ribosomal subunit protein eS12", "gene_name": "RPS12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46781-1", "protein_name": "Small ribosomal subunit protein uS4", "gene_name": "RPS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62424-1", "protein_name": "Large ribosomal subunit protein eL8", "gene_name": "RPL7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62701-1", "protein_name": "Small ribosomal subunit protein eS4, X isoform", "gene_name": "RPS4X", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63220-1", "protein_name": "Small ribosomal subunit protein eS21", "gene_name": "RPS21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TD47-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 2", "gene_name": "RPS4Y2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96RU7-1", "protein_name": "Tribbles homolog 3", "gene_name": "TRIB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08243-1", "protein_name": "Asparagine synthetase [glutamine-hydrolyzing]", "gene_name": "ASNS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53567-1", "protein_name": "CCAAT/enhancer-binding protein gamma", "gene_name": "CEBPG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18847-1", "protein_name": "Cyclic AMP-dependent transcription factor ATF-3", "gene_name": "ATF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35638-1", "protein_name": "DNA damage-inducible transcript 3 protein", "gene_name": "DDIT3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15336-1", "protein_name": "Cyclic AMP-dependent transcription factor ATF-2", "gene_name": "ATF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18848-1", "protein_name": "Cyclic AMP-dependent transcription factor ATF-4", "gene_name": "ATF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07020-1", "protein_name": "Large ribosomal subunit protein eL18", "gene_name": "RPL18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35268-1", "protein_name": "Large ribosomal subunit protein eL22", "gene_name": "RPL22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83881-1", "protein_name": "Large ribosomal subunit protein eL42", "gene_name": "RPL36A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61353-1", "protein_name": "Large ribosomal subunit protein eL27", "gene_name": "RPL27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNX3-1", "protein_name": "Ribosomal protein uL24-like", "gene_name": "RPL26L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02543-1", "protein_name": "Large ribosomal subunit protein eL20", "gene_name": "RPL18A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40429-1", "protein_name": "Large ribosomal subunit protein uL13", "gene_name": "RPL13A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63173-1", "protein_name": "Large ribosomal subunit protein eL38", "gene_name": "RPL38", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62910-1", "protein_name": "Large ribosomal subunit protein eL32", "gene_name": "RPL32", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39023-1", "protein_name": "Large ribosomal subunit protein uL3", "gene_name": "RPL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18077-1", "protein_name": "Large ribosomal subunit protein eL33", "gene_name": "RPL35A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61254-1", "protein_name": "Large ribosomal subunit protein uL24", "gene_name": "RPL26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84098-1", "protein_name": "Large ribosomal subunit protein eL19", "gene_name": "RPL19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62888-1", "protein_name": "Large ribosomal subunit protein eL30", "gene_name": "RPL30", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83731-1", "protein_name": "Large ribosomal subunit protein eL24", "gene_name": "RPL24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62899-1", "protein_name": "Large ribosomal subunit protein eL31", "gene_name": "RPL31", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62945-1", "protein_name": "Small ribosomal subunit protein eS32", "gene_name": "RPL41", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61927-1", "protein_name": "Large ribosomal subunit protein eL37", "gene_name": "RPL37", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42766-1", "protein_name": "Large ribosomal subunit protein uL29", "gene_name": "RPL35", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05387-1", "protein_name": "Large ribosomal subunit protein P2", "gene_name": "RPLP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92901-1", "protein_name": "Ribosomal protein uL3-like", "gene_name": "RPL3L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46778-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "RPL21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05386-1", "protein_name": "Large ribosomal subunit protein P1", "gene_name": "RPLP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49207-1", "protein_name": "Large ribosomal subunit protein eL34", "gene_name": "RPL34", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62891-1", "protein_name": "Large ribosomal subunit protein eL39", "gene_name": "RPL39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96L21-1", "protein_name": "Ribosomal protein uL16-like", "gene_name": "RPL10L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26373-1", "protein_name": "Large ribosomal subunit protein eL13", "gene_name": "RPL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q06507-1", "protein_name": "Cyclic AMP-dependent transcription factor ATF-4", "gene_name": "Atf4", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P60866-1", "protein_name": "Small ribosomal subunit protein uS10", "gene_name": "RPS20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969Q0-1", "protein_name": "Ribosomal protein eL42-like", "gene_name": "RPL36AL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61247-1", "protein_name": "Small ribosomal subunit protein eS1", "gene_name": "RPS3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P2X3-1", "protein_name": "Protein IMPACT", "gene_name": "IMPACT", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62854-1", "protein_name": "Small ribosomal subunit protein eS26", "gene_name": "RPS26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62851-1", "protein_name": "Small ribosomal subunit protein eS25", "gene_name": "RPS25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08865-1", "protein_name": "Small ribosomal subunit protein uS2", "gene_name": "RPSA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62847-1", "protein_name": "Small ribosomal subunit protein eS24", "gene_name": "RPS24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62861-1", "protein_name": "Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein", "gene_name": "FAU", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62241-1", "protein_name": "Small ribosomal subunit protein eS8", "gene_name": "RPS8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62277-1", "protein_name": "Small ribosomal subunit protein uS15", "gene_name": "RPS13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39019-1", "protein_name": "Small ribosomal subunit protein eS19", "gene_name": "RPS19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62269-1", "protein_name": "Small ribosomal subunit protein uS13", "gene_name": "RPS18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02878-1", "protein_name": "Large ribosomal subunit protein eL6", "gene_name": "RPL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62273-1", "protein_name": "Small ribosomal subunit protein uS14", "gene_name": "RPS29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17676-1", "protein_name": "CCAAT/enhancer-binding protein beta", "gene_name": "CEBPB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20042-1", "protein_name": "Eukaryotic translation initiation factor 2 subunit 2", "gene_name": "EIF2S2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42677-1", "protein_name": "Small ribosomal subunit protein eS27", "gene_name": "RPS27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EH5-1", "protein_name": "Ribosomal protein eL39-like 2", "gene_name": "RPL39L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62263-1", "protein_name": "Small ribosomal subunit protein uS11", "gene_name": "RPS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61513-1", "protein_name": "Large ribosomal subunit protein eL43", "gene_name": "RPL37A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18124-1", "protein_name": "Large ribosomal subunit protein uL30", "gene_name": "RPL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P28033-1", "protein_name": "CCAAT/enhancer-binding protein beta", "gene_name": "Cebpb", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P15880-1", "protein_name": "Small ribosomal subunit protein uS5", "gene_name": "RPS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62750-1", "protein_name": "Large ribosomal subunit protein uL23", "gene_name": "RPL23A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62280-1", "protein_name": "Small ribosomal subunit protein uS17", "gene_name": "RPS11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62249-1", "protein_name": "Small ribosomal subunit protein uS9", "gene_name": "RPS16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50914-1", "protein_name": "Large ribosomal subunit protein eL14", "gene_name": "RPL14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62906-1", "protein_name": "Large ribosomal subunit protein uL1", "gene_name": "RPL10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23396-1", "protein_name": "Small ribosomal subunit protein uS3", "gene_name": "RPS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05198-1", "protein_name": "Eukaryotic translation initiation factor 2 subunit 1", "gene_name": "EIF2S1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62841-1", "protein_name": "Small ribosomal subunit protein uS19", "gene_name": "RPS15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92616-1", "protein_name": "Stalled ribosome sensor GCN1", "gene_name": "GCN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "C0HME6-1", "protein_name": "RPL36 alternative reading frame protein", "gene_name": "RPL36", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62829-1", "protein_name": "Large ribosomal subunit protein uL14", "gene_name": "RPL23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32969-1", "protein_name": "Large ribosomal subunit protein uL6", "gene_name": "RPL9P7; RPL9P8; RPL9P9; RPL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30050-1", "protein_name": "Large ribosomal subunit protein uL11", "gene_name": "RPL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62266-1", "protein_name": "Small ribosomal subunit protein uS12", "gene_name": "RPS23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46777-1", "protein_name": "Large ribosomal subunit protein uL18", "gene_name": "RPL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P2K8-1", "protein_name": "eIF-2-alpha kinase GCN2", "gene_name": "EIF2AK4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41091-1", "protein_name": "Eukaryotic translation initiation factor 2 subunit 3", "gene_name": "EIF2S3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62753-1", "protein_name": "Small ribosomal subunit protein eS6", "gene_name": "RPS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27635-1", "protein_name": "Large ribosomal subunit protein uL16", "gene_name": "RPL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62913-1", "protein_name": "Large ribosomal subunit protein uL5", "gene_name": "RPL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36578-1", "protein_name": "Large ribosomal subunit protein uL4", "gene_name": "RPL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05388-1", "protein_name": "Large ribosomal subunit protein uL10", "gene_name": "RPLP0", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46779-1", "protein_name": "Large ribosomal subunit protein eL28", "gene_name": "RPL28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62857-1", "protein_name": "Small ribosomal subunit protein eS28", "gene_name": "RPS28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61313-1", "protein_name": "Large ribosomal subunit protein eL15", "gene_name": "RPL15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62081-1", "protein_name": "Small ribosomal subunit protein eS7", "gene_name": "RPS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71UM5-1", "protein_name": "Ribosomal protein eS27-like", "gene_name": "RPS27L", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P18621", "url": "https://www.uniprot.org/uniprotkb/P18621" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.11018027", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 104 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Decoding apparatus for eukaryotic selenocysteine insertion.", "journal": "EMBO reports", "date": "2000", "authors": "Tujebajeva RM, Copeland PR, Xu XM, Carlson BA, Harney JW, Driscoll DM, Hatfield DL, Berry MJ", "reference": { "type": "PubMed", "id": "11265756", "url": "https://pubmed.ncbi.nlm.nih.gov/11265756" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P18621-1", "protein_name": "Large ribosomal subunit protein uL22", "gene_name": "RPL17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46776-1", "protein_name": "Large ribosomal subunit protein uL15", "gene_name": "RPL27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46782-1", "protein_name": "Small ribosomal subunit protein uS7", "gene_name": "RPS5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57772-1", "protein_name": "Selenocysteine-specific elongation factor", "gene_name": "EEFSEC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47914-1", "protein_name": "Large ribosomal subunit protein eL29", "gene_name": "RPL29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62244-1", "protein_name": "Small ribosomal subunit protein uS8", "gene_name": "RPS15A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22090-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 1", "gene_name": "RPS4Y1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P5R6-1", "protein_name": "Ribosomal protein eL22-like", "gene_name": "RPL22L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08708-1", "protein_name": "Small ribosomal subunit protein eS17", "gene_name": "RPS17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46783-1", "protein_name": "Small ribosomal subunit protein eS10", "gene_name": "RPS10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62917-1", "protein_name": "Large ribosomal subunit protein uL2", "gene_name": "RPL8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25398-1", "protein_name": "Small ribosomal subunit protein eS12", "gene_name": "RPS12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46781-1", "protein_name": "Small ribosomal subunit protein uS4", "gene_name": "RPS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62424-1", "protein_name": "Large ribosomal subunit protein eL8", "gene_name": "RPL7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62701-1", "protein_name": "Small ribosomal subunit protein eS4, X isoform", "gene_name": "RPS4X", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63220-1", "protein_name": "Small ribosomal subunit protein eS21", "gene_name": "RPS21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TD47-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 2", "gene_name": "RPS4Y2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49591-1", "protein_name": "Serine--tRNA ligase, cytoplasmic", "gene_name": "SARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07020-1", "protein_name": "Large ribosomal subunit protein eL18", "gene_name": "RPL18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35268-1", "protein_name": "Large ribosomal subunit protein eL22", "gene_name": "RPL22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83881-1", "protein_name": "Large ribosomal subunit protein eL42", "gene_name": "RPL36A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61353-1", "protein_name": "Large ribosomal subunit protein eL27", "gene_name": "RPL27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNX3-1", "protein_name": "Ribosomal protein uL24-like", "gene_name": "RPL26L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02543-1", "protein_name": "Large ribosomal subunit protein eL20", "gene_name": "RPL18A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40429-1", "protein_name": "Large ribosomal subunit protein uL13", "gene_name": "RPL13A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63173-1", "protein_name": "Large ribosomal subunit protein eL38", "gene_name": "RPL38", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62910-1", "protein_name": "Large ribosomal subunit protein eL32", "gene_name": "RPL32", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39023-1", "protein_name": "Large ribosomal subunit protein uL3", "gene_name": "RPL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18077-1", "protein_name": "Large ribosomal subunit protein eL33", "gene_name": "RPL35A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61254-1", "protein_name": "Large ribosomal subunit protein uL24", "gene_name": "RPL26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84098-1", "protein_name": "Large ribosomal subunit protein eL19", "gene_name": "RPL19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62888-1", "protein_name": "Large ribosomal subunit protein eL30", "gene_name": "RPL30", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83731-1", "protein_name": "Large ribosomal subunit protein eL24", "gene_name": "RPL24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62899-1", "protein_name": "Large ribosomal subunit protein eL31", "gene_name": "RPL31", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62945-1", "protein_name": "Small ribosomal subunit protein eS32", "gene_name": "RPL41", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61927-1", "protein_name": "Large ribosomal subunit protein eL37", "gene_name": "RPL37", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42766-1", "protein_name": "Large ribosomal subunit protein uL29", "gene_name": "RPL35", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05387-1", "protein_name": "Large ribosomal subunit protein P2", "gene_name": "RPLP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92901-1", "protein_name": "Ribosomal protein uL3-like", "gene_name": "RPL3L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46778-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "RPL21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05386-1", "protein_name": "Large ribosomal subunit protein P1", "gene_name": "RPLP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49207-1", "protein_name": "Large ribosomal subunit protein eL34", "gene_name": "RPL34", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62891-1", "protein_name": "Large ribosomal subunit protein eL39", "gene_name": "RPL39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96L21-1", "protein_name": "Ribosomal protein uL16-like", "gene_name": "RPL10L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26373-1", "protein_name": "Large ribosomal subunit protein eL13", "gene_name": "RPL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60866-1", "protein_name": "Small ribosomal subunit protein uS10", "gene_name": "RPS20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96T21-1", "protein_name": "Selenocysteine insertion sequence-binding protein 2", "gene_name": "SECISBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969Q0-1", "protein_name": "Ribosomal protein eL42-like", "gene_name": "RPL36AL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61247-1", "protein_name": "Small ribosomal subunit protein eS1", "gene_name": "RPS3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62854-1", "protein_name": "Small ribosomal subunit protein eS26", "gene_name": "RPS26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62851-1", "protein_name": "Small ribosomal subunit protein eS25", "gene_name": "RPS25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08865-1", "protein_name": "Small ribosomal subunit protein uS2", "gene_name": "RPSA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62847-1", "protein_name": "Small ribosomal subunit protein eS24", "gene_name": "RPS24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62861-1", "protein_name": "Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein", "gene_name": "FAU", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62241-1", "protein_name": "Small ribosomal subunit protein eS8", "gene_name": "RPS8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62277-1", "protein_name": "Small ribosomal subunit protein uS15", "gene_name": "RPS13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39019-1", "protein_name": "Small ribosomal subunit protein eS19", "gene_name": "RPS19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62269-1", "protein_name": "Small ribosomal subunit protein uS13", "gene_name": "RPS18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02878-1", "protein_name": "Large ribosomal subunit protein eL6", "gene_name": "RPL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62273-1", "protein_name": "Small ribosomal subunit protein uS14", "gene_name": "RPS29", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HD40-1", "protein_name": "O-phosphoseryl-tRNA(Sec) selenium transferase", "gene_name": "SEPSECS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42677-1", "protein_name": "Small ribosomal subunit protein eS27", "gene_name": "RPS27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EH5-1", "protein_name": "Ribosomal protein eL39-like 2", "gene_name": "RPL39L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62263-1", "protein_name": "Small ribosomal subunit protein uS11", "gene_name": "RPS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61513-1", "protein_name": "Large ribosomal subunit protein eL43", "gene_name": "RPL37A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18124-1", "protein_name": "Large ribosomal subunit protein uL30", "gene_name": "RPL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15880-1", "protein_name": "Small ribosomal subunit protein uS5", "gene_name": "RPS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62750-1", "protein_name": "Large ribosomal subunit protein uL23", "gene_name": "RPL23A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62280-1", "protein_name": "Small ribosomal subunit protein uS17", "gene_name": "RPS11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62249-1", "protein_name": "Small ribosomal subunit protein uS9", "gene_name": "RPS16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50914-1", "protein_name": "Large ribosomal subunit protein eL14", "gene_name": "RPL14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62906-1", "protein_name": "Large ribosomal subunit protein uL1", "gene_name": "RPL10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23396-1", "protein_name": "Small ribosomal subunit protein uS3", "gene_name": "RPS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62841-1", "protein_name": "Small ribosomal subunit protein uS19", "gene_name": "RPS15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q98SV1-1", "protein_name": "Selenoprotein Pa", "gene_name": "selenop; sepp1a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "C0HME6-1", "protein_name": "RPL36 alternative reading frame protein", "gene_name": "RPL36", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62829-1", "protein_name": "Large ribosomal subunit protein uL14", "gene_name": "RPL23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32969-1", "protein_name": "Large ribosomal subunit protein uL6", "gene_name": "RPL9P7; RPL9P8; RPL9P9; RPL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30050-1", "protein_name": "Large ribosomal subunit protein uL11", "gene_name": "RPL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62266-1", "protein_name": "Small ribosomal subunit protein uS12", "gene_name": "RPS23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46777-1", "protein_name": "Large ribosomal subunit protein uL18", "gene_name": "RPL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62753-1", "protein_name": "Small ribosomal subunit protein eS6", "gene_name": "RPS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99611-1", "protein_name": "Selenide, water dikinase 2", "gene_name": "SEPHS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IV42-1", "protein_name": "L-seryl-tRNA(Sec) kinase", "gene_name": "PSTK", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27635-1", "protein_name": "Large ribosomal subunit protein uL16", "gene_name": "RPL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62913-1", "protein_name": "Large ribosomal subunit protein uL5", "gene_name": "RPL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36578-1", "protein_name": "Large ribosomal subunit protein uL4", "gene_name": "RPL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05388-1", "protein_name": "Large ribosomal subunit protein uL10", "gene_name": "RPLP0", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46779-1", "protein_name": "Large ribosomal subunit protein eL28", "gene_name": "RPL28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62857-1", "protein_name": "Small ribosomal subunit protein eS28", "gene_name": "RPS28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61313-1", "protein_name": "Large ribosomal subunit protein eL15", "gene_name": "RPL15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62081-1", "protein_name": "Small ribosomal subunit protein eS7", "gene_name": "RPS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71UM5-1", "protein_name": "Ribosomal protein eS27-like", "gene_name": "RPS27L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9JHW4-1", "protein_name": "Selenocysteine-specific elongation factor", "gene_name": "Eefsec", "tax_name": "Mouse" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P18621", "url": "https://www.uniprot.org/uniprotkb/P18621" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.11265756", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 96 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Cloning of a novel phosphatidylinositol kinase-related kinase: characterization of the human SMG-1 RNA surveillance protein.", "journal": "The Journal of biological chemistry", "date": "2001", "authors": "Denning G, Jamieson L, Maquat LE, Thompson EA, Fields AP", "reference": { "type": "PubMed", "id": "11331269", "url": "https://pubmed.ncbi.nlm.nih.gov/11331269" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P18621-1", "protein_name": "Large ribosomal subunit protein uL22", "gene_name": "RPL17", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H1J1-1", "protein_name": "Regulator of nonsense transcripts 3A", "gene_name": "UPF3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46776-1", "protein_name": "Large ribosomal subunit protein uL15", "gene_name": "RPL27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46782-1", "protein_name": "Small ribosomal subunit protein uS7", "gene_name": "RPS5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47914-1", "protein_name": "Large ribosomal subunit protein eL29", "gene_name": "RPL29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62244-1", "protein_name": "Small ribosomal subunit protein uS8", "gene_name": "RPS15A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22090-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 1", "gene_name": "RPS4Y1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P5R6-1", "protein_name": "Ribosomal protein eL22-like", "gene_name": "RPL22L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08708-1", "protein_name": "Small ribosomal subunit protein eS17", "gene_name": "RPS17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46783-1", "protein_name": "Small ribosomal subunit protein eS10", "gene_name": "RPS10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62917-1", "protein_name": "Large ribosomal subunit protein uL2", "gene_name": "RPL8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25398-1", "protein_name": "Small ribosomal subunit protein eS12", "gene_name": "RPS12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46781-1", "protein_name": "Small ribosomal subunit protein uS4", "gene_name": "RPS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62424-1", "protein_name": "Large ribosomal subunit protein eL8", "gene_name": "RPL7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62701-1", "protein_name": "Small ribosomal subunit protein eS4, X isoform", "gene_name": "RPS4X", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63220-1", "protein_name": "Small ribosomal subunit protein eS21", "gene_name": "RPS21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TD47-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 2", "gene_name": "RPS4Y2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11940-1", "protein_name": "Polyadenylate-binding protein 1", "gene_name": "PABPC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07020-1", "protein_name": "Large ribosomal subunit protein eL18", "gene_name": "RPL18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35268-1", "protein_name": "Large ribosomal subunit protein eL22", "gene_name": "RPL22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83881-1", "protein_name": "Large ribosomal subunit protein eL42", "gene_name": "RPL36A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61353-1", "protein_name": "Large ribosomal subunit protein eL27", "gene_name": "RPL27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNX3-1", "protein_name": "Ribosomal protein uL24-like", "gene_name": "RPL26L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02543-1", "protein_name": "Large ribosomal subunit protein eL20", "gene_name": "RPL18A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40429-1", "protein_name": "Large ribosomal subunit protein uL13", "gene_name": "RPL13A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63173-1", "protein_name": "Large ribosomal subunit protein eL38", "gene_name": "RPL38", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62910-1", "protein_name": "Large ribosomal subunit protein eL32", "gene_name": "RPL32", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39023-1", "protein_name": "Large ribosomal subunit protein uL3", "gene_name": "RPL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18077-1", "protein_name": "Large ribosomal subunit protein eL33", "gene_name": "RPL35A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61254-1", "protein_name": "Large ribosomal subunit protein uL24", "gene_name": "RPL26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84098-1", "protein_name": "Large ribosomal subunit protein eL19", "gene_name": "RPL19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62888-1", "protein_name": "Large ribosomal subunit protein eL30", "gene_name": "RPL30", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83731-1", "protein_name": "Large ribosomal subunit protein eL24", "gene_name": "RPL24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62899-1", "protein_name": "Large ribosomal subunit protein eL31", "gene_name": "RPL31", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62945-1", "protein_name": "Small ribosomal subunit protein eS32", "gene_name": "RPL41", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61927-1", "protein_name": "Large ribosomal subunit protein eL37", "gene_name": "RPL37", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42766-1", "protein_name": "Large ribosomal subunit protein uL29", "gene_name": "RPL35", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05387-1", "protein_name": "Large ribosomal subunit protein P2", "gene_name": "RPLP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92901-1", "protein_name": "Ribosomal protein uL3-like", "gene_name": "RPL3L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46778-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "RPL21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05386-1", "protein_name": "Large ribosomal subunit protein P1", "gene_name": "RPLP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49207-1", "protein_name": "Large ribosomal subunit protein eL34", "gene_name": "RPL34", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62891-1", "protein_name": "Large ribosomal subunit protein eL39", "gene_name": "RPL39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96L21-1", "protein_name": "Ribosomal protein uL16-like", "gene_name": "RPL10L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26373-1", "protein_name": "Large ribosomal subunit protein eL13", "gene_name": "RPL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86US8-1", "protein_name": "Telomerase-binding protein EST1A", "gene_name": "SMG6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYD1-1", "protein_name": "Eukaryotic peptide chain release factor GTP-binding subunit ERF3B", "gene_name": "GSPT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60866-1", "protein_name": "Small ribosomal subunit protein uS10", "gene_name": "RPS20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969Q0-1", "protein_name": "Ribosomal protein eL42-like", "gene_name": "RPL36AL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61247-1", "protein_name": "Small ribosomal subunit protein eS1", "gene_name": "RPS3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62854-1", "protein_name": "Small ribosomal subunit protein eS26", "gene_name": "RPS26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62851-1", "protein_name": "Small ribosomal subunit protein eS25", "gene_name": "RPS25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08865-1", "protein_name": "Small ribosomal subunit protein uS2", "gene_name": "RPSA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62847-1", "protein_name": "Small ribosomal subunit protein eS24", "gene_name": "RPS24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62861-1", "protein_name": "Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein", "gene_name": "FAU", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62241-1", "protein_name": "Small ribosomal subunit protein eS8", "gene_name": "RPS8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62277-1", "protein_name": "Small ribosomal subunit protein uS15", "gene_name": "RPS13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39019-1", "protein_name": "Small ribosomal subunit protein eS19", "gene_name": "RPS19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92540-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG7", "gene_name": "SMG7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPR3-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG5", "gene_name": "SMG5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62269-1", "protein_name": "Small ribosomal subunit protein uS13", "gene_name": "RPS18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02878-1", "protein_name": "Large ribosomal subunit protein eL6", "gene_name": "RPL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62273-1", "protein_name": "Small ribosomal subunit protein uS14", "gene_name": "RPS29", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8ND04-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG8", "gene_name": "SMG8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPI6-1", "protein_name": "mRNA-decapping enzyme 1A", "gene_name": "DCP1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42677-1", "protein_name": "Small ribosomal subunit protein eS27", "gene_name": "RPS27", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38919-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "EIF4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61326-1", "protein_name": "Protein mago nashi homolog", "gene_name": "MAGOH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EH5-1", "protein_name": "Ribosomal protein eL39-like 2", "gene_name": "RPL39L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15287-1", "protein_name": "RNA-binding protein with serine-rich domain 1", "gene_name": "RNPS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0W8-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG9", "gene_name": "SMG9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62263-1", "protein_name": "Small ribosomal subunit protein uS11", "gene_name": "RPS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61513-1", "protein_name": "Large ribosomal subunit protein eL43", "gene_name": "RPL37A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18124-1", "protein_name": "Large ribosomal subunit protein uL30", "gene_name": "RPL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZI7-1", "protein_name": "Regulator of nonsense transcripts 3B", "gene_name": "UPF3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15880-1", "protein_name": "Small ribosomal subunit protein uS5", "gene_name": "RPS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62750-1", "protein_name": "Large ribosomal subunit protein uL23", "gene_name": "RPL23A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62280-1", "protein_name": "Small ribosomal subunit protein uS17", "gene_name": "RPS11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62249-1", "protein_name": "Small ribosomal subunit protein uS9", "gene_name": "RPS16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50914-1", "protein_name": "Large ribosomal subunit protein eL14", "gene_name": "RPL14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62906-1", "protein_name": "Large ribosomal subunit protein uL1", "gene_name": "RPL10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23396-1", "protein_name": "Small ribosomal subunit protein uS3", "gene_name": "RPS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63151-1", "protein_name": "Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform", "gene_name": "PPP2R2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A72-1", "protein_name": "Protein mago nashi homolog 2", "gene_name": "MAGOHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62841-1", "protein_name": "Small ribosomal subunit protein uS19", "gene_name": "RPS15", "tax_name": "Human" }, { "uniprot_canonical_ac": "C0HME6-1", "protein_name": "RPL36 alternative reading frame protein", "gene_name": "RPL36", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62829-1", "protein_name": "Large ribosomal subunit protein uL14", "gene_name": "RPL23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32969-1", "protein_name": "Large ribosomal subunit protein uL6", "gene_name": "RPL9P7; RPL9P8; RPL9P9; RPL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30050-1", "protein_name": "Large ribosomal subunit protein uL11", "gene_name": "RPL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q04637-1", "protein_name": "Eukaryotic translation initiation factor 4 gamma 1", "gene_name": "EIF4G1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62266-1", "protein_name": "Small ribosomal subunit protein uS12", "gene_name": "RPS23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46777-1", "protein_name": "Large ribosomal subunit protein uL18", "gene_name": "RPL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96Q15-1", "protein_name": "Serine/threonine-protein kinase SMG1", "gene_name": "SMG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62753-1", "protein_name": "Small ribosomal subunit protein eS6", "gene_name": "RPS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27635-1", "protein_name": "Large ribosomal subunit protein uL16", "gene_name": "RPL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62913-1", "protein_name": "Large ribosomal subunit protein uL5", "gene_name": "RPL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36578-1", "protein_name": "Large ribosomal subunit protein uL4", "gene_name": "RPL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HAU5-1", "protein_name": "Regulator of nonsense transcripts 2", "gene_name": "UPF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5S9-1", "protein_name": "RNA-binding protein 8A", "gene_name": "RBM8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15234-1", "protein_name": "Protein CASC3", "gene_name": "CASC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05388-1", "protein_name": "Large ribosomal subunit protein uL10", "gene_name": "RPLP0", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46779-1", "protein_name": "Large ribosomal subunit protein eL28", "gene_name": "RPL28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62857-1", "protein_name": "Small ribosomal subunit protein eS28", "gene_name": "RPS28", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPJ4-1", "protein_name": "Proline-rich nuclear receptor coactivator 2", "gene_name": "PNRC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15170-1", "protein_name": "Eukaryotic peptide chain release factor GTP-binding subunit ERF3A", "gene_name": "GSPT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62495-1", "protein_name": "Eukaryotic peptide chain release factor subunit 1", "gene_name": "ETF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61313-1", "protein_name": "Large ribosomal subunit protein eL15", "gene_name": "RPL15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62081-1", "protein_name": "Small ribosomal subunit protein eS7", "gene_name": "RPS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71UM5-1", "protein_name": "Ribosomal protein eS27-like", "gene_name": "RPS27L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30153-1", "protein_name": "Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform", "gene_name": "PPP2R1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67775-1", "protein_name": "Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform", "gene_name": "PPP2CA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92900-1", "protein_name": "Regulator of nonsense transcripts 1", "gene_name": "UPF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P18621", "url": "https://www.uniprot.org/uniprotkb/P18621" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 2335, "end_pos": 2335, "sequence_org": "D", "sequence_mut": "A", "comment": "Loss of function.", "evidence": [ { "database": "UniProtKB", "id": "Q96Q15", "url": "https://www.uniprot.org/uniprotkb/Q96Q15" }, { "database": "PubMed", "id": "11544179", "url": "https://pubmed.ncbi.nlm.nih.gov/11544179" }, { "database": "PubMed", "id": "15175154", "url": "https://pubmed.ncbi.nlm.nih.gov/15175154" }, { "database": "PubMed", "id": "11331269", "url": "https://pubmed.ncbi.nlm.nih.gov/11331269" } ], "uniprot_canonical_ac": "Q96Q15-1" } ], "record_id": "pubmed.11331269", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 116 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The exon-exon junction complex provides a binding platform for factors involved in mRNA export and nonsense-mediated mRNA decay.", "journal": "The EMBO journal", "date": "2001", "authors": "Le Hir H, Gatfield D, Izaurralde E, Moore MJ", "reference": { "type": "PubMed", "id": "11532962", "url": "https://pubmed.ncbi.nlm.nih.gov/11532962" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P18621-1", "protein_name": "Large ribosomal subunit protein uL22", "gene_name": "RPL17", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H1J1-1", "protein_name": "Regulator of nonsense transcripts 3A", "gene_name": "UPF3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46776-1", "protein_name": "Large ribosomal subunit protein uL15", "gene_name": "RPL27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46782-1", "protein_name": "Small ribosomal subunit protein uS7", "gene_name": "RPS5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47914-1", "protein_name": "Large ribosomal subunit protein eL29", "gene_name": "RPL29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62244-1", "protein_name": "Small ribosomal subunit protein uS8", "gene_name": "RPS15A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22090-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 1", "gene_name": "RPS4Y1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P5R6-1", "protein_name": "Ribosomal protein eL22-like", "gene_name": "RPL22L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08708-1", "protein_name": "Small ribosomal subunit protein eS17", "gene_name": "RPS17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46783-1", "protein_name": "Small ribosomal subunit protein eS10", "gene_name": "RPS10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62917-1", "protein_name": "Large ribosomal subunit protein uL2", "gene_name": "RPL8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25398-1", "protein_name": "Small ribosomal subunit protein eS12", "gene_name": "RPS12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46781-1", "protein_name": "Small ribosomal subunit protein uS4", "gene_name": "RPS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62424-1", "protein_name": "Large ribosomal subunit protein eL8", "gene_name": "RPL7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62701-1", "protein_name": "Small ribosomal subunit protein eS4, X isoform", "gene_name": "RPS4X", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63220-1", "protein_name": "Small ribosomal subunit protein eS21", "gene_name": "RPS21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TD47-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 2", "gene_name": "RPS4Y2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11940-1", "protein_name": "Polyadenylate-binding protein 1", "gene_name": "PABPC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07020-1", "protein_name": "Large ribosomal subunit protein eL18", "gene_name": "RPL18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35268-1", "protein_name": "Large ribosomal subunit protein eL22", "gene_name": "RPL22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83881-1", "protein_name": "Large ribosomal subunit protein eL42", "gene_name": "RPL36A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61353-1", "protein_name": "Large ribosomal subunit protein eL27", "gene_name": "RPL27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNX3-1", "protein_name": "Ribosomal protein uL24-like", "gene_name": "RPL26L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02543-1", "protein_name": "Large ribosomal subunit protein eL20", "gene_name": "RPL18A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40429-1", "protein_name": "Large ribosomal subunit protein uL13", "gene_name": "RPL13A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63173-1", "protein_name": "Large ribosomal subunit protein eL38", "gene_name": "RPL38", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62910-1", "protein_name": "Large ribosomal subunit protein eL32", "gene_name": "RPL32", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39023-1", "protein_name": "Large ribosomal subunit protein uL3", "gene_name": "RPL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18077-1", "protein_name": "Large ribosomal subunit protein eL33", "gene_name": "RPL35A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61254-1", "protein_name": "Large ribosomal subunit protein uL24", "gene_name": "RPL26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84098-1", "protein_name": "Large ribosomal subunit protein eL19", "gene_name": "RPL19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62888-1", "protein_name": "Large ribosomal subunit protein eL30", "gene_name": "RPL30", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83731-1", "protein_name": "Large ribosomal subunit protein eL24", "gene_name": "RPL24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62899-1", "protein_name": "Large ribosomal subunit protein eL31", "gene_name": "RPL31", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62945-1", "protein_name": "Small ribosomal subunit protein eS32", "gene_name": "RPL41", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61927-1", "protein_name": "Large ribosomal subunit protein eL37", "gene_name": "RPL37", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42766-1", "protein_name": "Large ribosomal subunit protein uL29", "gene_name": "RPL35", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05387-1", "protein_name": "Large ribosomal subunit protein P2", "gene_name": "RPLP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92901-1", "protein_name": "Ribosomal protein uL3-like", "gene_name": "RPL3L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46778-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "RPL21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05386-1", "protein_name": "Large ribosomal subunit protein P1", "gene_name": "RPLP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49207-1", "protein_name": "Large ribosomal subunit protein eL34", "gene_name": "RPL34", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62891-1", "protein_name": "Large ribosomal subunit protein eL39", "gene_name": "RPL39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96L21-1", "protein_name": "Ribosomal protein uL16-like", "gene_name": "RPL10L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26373-1", "protein_name": "Large ribosomal subunit protein eL13", "gene_name": "RPL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86US8-1", "protein_name": "Telomerase-binding protein EST1A", "gene_name": "SMG6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYD1-1", "protein_name": "Eukaryotic peptide chain release factor GTP-binding subunit ERF3B", "gene_name": "GSPT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60866-1", "protein_name": "Small ribosomal subunit protein uS10", "gene_name": "RPS20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969Q0-1", "protein_name": "Ribosomal protein eL42-like", "gene_name": "RPL36AL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61247-1", "protein_name": "Small ribosomal subunit protein eS1", "gene_name": "RPS3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62854-1", "protein_name": "Small ribosomal subunit protein eS26", "gene_name": "RPS26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62851-1", "protein_name": "Small ribosomal subunit protein eS25", "gene_name": "RPS25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08865-1", "protein_name": "Small ribosomal subunit protein uS2", "gene_name": "RPSA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62847-1", "protein_name": "Small ribosomal subunit protein eS24", "gene_name": "RPS24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62861-1", "protein_name": "Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein", "gene_name": "FAU", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62241-1", "protein_name": "Small ribosomal subunit protein eS8", "gene_name": "RPS8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62277-1", "protein_name": "Small ribosomal subunit protein uS15", "gene_name": "RPS13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39019-1", "protein_name": "Small ribosomal subunit protein eS19", "gene_name": "RPS19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92540-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG7", "gene_name": "SMG7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPR3-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG5", "gene_name": "SMG5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62269-1", "protein_name": "Small ribosomal subunit protein uS13", "gene_name": "RPS18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02878-1", "protein_name": "Large ribosomal subunit protein eL6", "gene_name": "RPL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62273-1", "protein_name": "Small ribosomal subunit protein uS14", "gene_name": "RPS29", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8ND04-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG8", "gene_name": "SMG8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPI6-1", "protein_name": "mRNA-decapping enzyme 1A", "gene_name": "DCP1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42677-1", "protein_name": "Small ribosomal subunit protein eS27", "gene_name": "RPS27", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38919-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "EIF4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61326-1", "protein_name": "Protein mago nashi homolog", "gene_name": "MAGOH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EH5-1", "protein_name": "Ribosomal protein eL39-like 2", "gene_name": "RPL39L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15287-1", "protein_name": "RNA-binding protein with serine-rich domain 1", "gene_name": "RNPS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0W8-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG9", "gene_name": "SMG9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62263-1", "protein_name": "Small ribosomal subunit protein uS11", "gene_name": "RPS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61513-1", "protein_name": "Large ribosomal subunit protein eL43", "gene_name": "RPL37A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18124-1", "protein_name": "Large ribosomal subunit protein uL30", "gene_name": "RPL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZI7-1", "protein_name": "Regulator of nonsense transcripts 3B", "gene_name": "UPF3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15880-1", "protein_name": "Small ribosomal subunit protein uS5", "gene_name": "RPS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62750-1", "protein_name": "Large ribosomal subunit protein uL23", "gene_name": "RPL23A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62280-1", "protein_name": "Small ribosomal subunit protein uS17", "gene_name": "RPS11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62249-1", "protein_name": "Small ribosomal subunit protein uS9", "gene_name": "RPS16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50914-1", "protein_name": "Large ribosomal subunit protein eL14", "gene_name": "RPL14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62906-1", "protein_name": "Large ribosomal subunit protein uL1", "gene_name": "RPL10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23396-1", "protein_name": "Small ribosomal subunit protein uS3", "gene_name": "RPS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63151-1", "protein_name": "Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform", "gene_name": "PPP2R2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A72-1", "protein_name": "Protein mago nashi homolog 2", "gene_name": "MAGOHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62841-1", "protein_name": "Small ribosomal subunit protein uS19", "gene_name": "RPS15", "tax_name": "Human" }, { "uniprot_canonical_ac": "C0HME6-1", "protein_name": "RPL36 alternative reading frame protein", "gene_name": "RPL36", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62829-1", "protein_name": "Large ribosomal subunit protein uL14", "gene_name": "RPL23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32969-1", "protein_name": "Large ribosomal subunit protein uL6", "gene_name": "RPL9P7; RPL9P8; RPL9P9; RPL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30050-1", "protein_name": "Large ribosomal subunit protein uL11", "gene_name": "RPL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q04637-1", "protein_name": "Eukaryotic translation initiation factor 4 gamma 1", "gene_name": "EIF4G1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62266-1", "protein_name": "Small ribosomal subunit protein uS12", "gene_name": "RPS23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46777-1", "protein_name": "Large ribosomal subunit protein uL18", "gene_name": "RPL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96Q15-1", "protein_name": "Serine/threonine-protein kinase SMG1", "gene_name": "SMG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62753-1", "protein_name": "Small ribosomal subunit protein eS6", "gene_name": "RPS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27635-1", "protein_name": "Large ribosomal subunit protein uL16", "gene_name": "RPL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62913-1", "protein_name": "Large ribosomal subunit protein uL5", "gene_name": "RPL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36578-1", "protein_name": "Large ribosomal subunit protein uL4", "gene_name": "RPL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HAU5-1", "protein_name": "Regulator of nonsense transcripts 2", "gene_name": "UPF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5S9-1", "protein_name": "RNA-binding protein 8A", "gene_name": "RBM8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15234-1", "protein_name": "Protein CASC3", "gene_name": "CASC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05388-1", "protein_name": "Large ribosomal subunit protein uL10", "gene_name": "RPLP0", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46779-1", "protein_name": "Large ribosomal subunit protein eL28", "gene_name": "RPL28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62857-1", "protein_name": "Small ribosomal subunit protein eS28", "gene_name": "RPS28", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPJ4-1", "protein_name": "Proline-rich nuclear receptor coactivator 2", "gene_name": "PNRC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15170-1", "protein_name": "Eukaryotic peptide chain release factor GTP-binding subunit ERF3A", "gene_name": "GSPT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62495-1", "protein_name": "Eukaryotic peptide chain release factor subunit 1", "gene_name": "ETF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61313-1", "protein_name": "Large ribosomal subunit protein eL15", "gene_name": "RPL15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62081-1", "protein_name": "Small ribosomal subunit protein eS7", "gene_name": "RPS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71UM5-1", "protein_name": "Ribosomal protein eS27-like", "gene_name": "RPS27L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30153-1", "protein_name": "Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform", "gene_name": "PPP2R1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67775-1", "protein_name": "Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform", "gene_name": "PPP2CA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92900-1", "protein_name": "Regulator of nonsense transcripts 1", "gene_name": "UPF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P18621", "url": "https://www.uniprot.org/uniprotkb/P18621" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.11532962", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 116 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Human SMG-1, a novel phosphatidylinositol 3-kinase-related protein kinase, associates with components of the mRNA surveillance complex and is involved in the regulation of nonsense-mediated mRNA decay.", "journal": "Genes & development", "date": "2001", "authors": "Yamashita A, Ohnishi T, Kashima I, Taya Y, Ohno S", "reference": { "type": "PubMed", "id": "11544179", "url": "https://pubmed.ncbi.nlm.nih.gov/11544179" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P18621-1", "protein_name": "Large ribosomal subunit protein uL22", "gene_name": "RPL17", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H1J1-1", "protein_name": "Regulator of nonsense transcripts 3A", "gene_name": "UPF3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46776-1", "protein_name": "Large ribosomal subunit protein uL15", "gene_name": "RPL27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46782-1", "protein_name": "Small ribosomal subunit protein uS7", "gene_name": "RPS5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47914-1", "protein_name": "Large ribosomal subunit protein eL29", "gene_name": "RPL29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62244-1", "protein_name": "Small ribosomal subunit protein uS8", "gene_name": "RPS15A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22090-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 1", "gene_name": "RPS4Y1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P5R6-1", "protein_name": "Ribosomal protein eL22-like", "gene_name": "RPL22L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08708-1", "protein_name": "Small ribosomal subunit protein eS17", "gene_name": "RPS17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46783-1", "protein_name": "Small ribosomal subunit protein eS10", "gene_name": "RPS10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62917-1", "protein_name": "Large ribosomal subunit protein uL2", "gene_name": "RPL8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25398-1", "protein_name": "Small ribosomal subunit protein eS12", "gene_name": "RPS12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46781-1", "protein_name": "Small ribosomal subunit protein uS4", "gene_name": "RPS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62424-1", "protein_name": "Large ribosomal subunit protein eL8", "gene_name": "RPL7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62701-1", "protein_name": "Small ribosomal subunit protein eS4, X isoform", "gene_name": "RPS4X", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63220-1", "protein_name": "Small ribosomal subunit protein eS21", "gene_name": "RPS21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TD47-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 2", "gene_name": "RPS4Y2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11940-1", "protein_name": "Polyadenylate-binding protein 1", "gene_name": "PABPC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07020-1", "protein_name": "Large ribosomal subunit protein eL18", "gene_name": "RPL18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35268-1", "protein_name": "Large ribosomal subunit protein eL22", "gene_name": "RPL22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83881-1", "protein_name": "Large ribosomal subunit protein eL42", "gene_name": "RPL36A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61353-1", "protein_name": "Large ribosomal subunit protein eL27", "gene_name": "RPL27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNX3-1", "protein_name": "Ribosomal protein uL24-like", "gene_name": "RPL26L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02543-1", "protein_name": "Large ribosomal subunit protein eL20", "gene_name": "RPL18A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40429-1", "protein_name": "Large ribosomal subunit protein uL13", "gene_name": "RPL13A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63173-1", "protein_name": "Large ribosomal subunit protein eL38", "gene_name": "RPL38", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62910-1", "protein_name": "Large ribosomal subunit protein eL32", "gene_name": "RPL32", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39023-1", "protein_name": "Large ribosomal subunit protein uL3", "gene_name": "RPL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18077-1", "protein_name": "Large ribosomal subunit protein eL33", "gene_name": "RPL35A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61254-1", "protein_name": "Large ribosomal subunit protein uL24", "gene_name": "RPL26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84098-1", "protein_name": "Large ribosomal subunit protein eL19", "gene_name": "RPL19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62888-1", "protein_name": "Large ribosomal subunit protein eL30", "gene_name": "RPL30", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83731-1", "protein_name": "Large ribosomal subunit protein eL24", "gene_name": "RPL24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62899-1", "protein_name": "Large ribosomal subunit protein eL31", "gene_name": "RPL31", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62945-1", "protein_name": "Small ribosomal subunit protein eS32", "gene_name": "RPL41", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61927-1", "protein_name": "Large ribosomal subunit protein eL37", "gene_name": "RPL37", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42766-1", "protein_name": "Large ribosomal subunit protein uL29", "gene_name": "RPL35", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05387-1", "protein_name": "Large ribosomal subunit protein P2", "gene_name": "RPLP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92901-1", "protein_name": "Ribosomal protein uL3-like", "gene_name": "RPL3L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46778-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "RPL21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05386-1", "protein_name": "Large ribosomal subunit protein P1", "gene_name": "RPLP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49207-1", "protein_name": "Large ribosomal subunit protein eL34", "gene_name": "RPL34", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62891-1", "protein_name": "Large ribosomal subunit protein eL39", "gene_name": "RPL39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96L21-1", "protein_name": "Ribosomal protein uL16-like", "gene_name": "RPL10L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26373-1", "protein_name": "Large ribosomal subunit protein eL13", "gene_name": "RPL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86US8-1", "protein_name": "Telomerase-binding protein EST1A", "gene_name": "SMG6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYD1-1", "protein_name": "Eukaryotic peptide chain release factor GTP-binding subunit ERF3B", "gene_name": "GSPT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60866-1", "protein_name": "Small ribosomal subunit protein uS10", "gene_name": "RPS20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969Q0-1", "protein_name": "Ribosomal protein eL42-like", "gene_name": "RPL36AL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61247-1", "protein_name": "Small ribosomal subunit protein eS1", "gene_name": "RPS3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62854-1", "protein_name": "Small ribosomal subunit protein eS26", "gene_name": "RPS26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62851-1", "protein_name": "Small ribosomal subunit protein eS25", "gene_name": "RPS25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08865-1", "protein_name": "Small ribosomal subunit protein uS2", "gene_name": "RPSA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62847-1", "protein_name": "Small ribosomal subunit protein eS24", "gene_name": "RPS24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62861-1", "protein_name": "Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein", "gene_name": "FAU", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62241-1", "protein_name": "Small ribosomal subunit protein eS8", "gene_name": "RPS8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62277-1", "protein_name": "Small ribosomal subunit protein uS15", "gene_name": "RPS13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39019-1", "protein_name": "Small ribosomal subunit protein eS19", "gene_name": "RPS19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92540-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG7", "gene_name": "SMG7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPR3-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG5", "gene_name": "SMG5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62269-1", "protein_name": "Small ribosomal subunit protein uS13", "gene_name": "RPS18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02878-1", "protein_name": "Large ribosomal subunit protein eL6", "gene_name": "RPL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62273-1", "protein_name": "Small ribosomal subunit protein uS14", "gene_name": "RPS29", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8ND04-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG8", "gene_name": "SMG8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPI6-1", "protein_name": "mRNA-decapping enzyme 1A", "gene_name": "DCP1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42677-1", "protein_name": "Small ribosomal subunit protein eS27", "gene_name": "RPS27", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38919-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "EIF4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61326-1", "protein_name": "Protein mago nashi homolog", "gene_name": "MAGOH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EH5-1", "protein_name": "Ribosomal protein eL39-like 2", "gene_name": "RPL39L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15287-1", "protein_name": "RNA-binding protein with serine-rich domain 1", "gene_name": "RNPS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0W8-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG9", "gene_name": "SMG9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62263-1", "protein_name": "Small ribosomal subunit protein uS11", "gene_name": "RPS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61513-1", "protein_name": "Large ribosomal subunit protein eL43", "gene_name": "RPL37A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18124-1", "protein_name": "Large ribosomal subunit protein uL30", "gene_name": "RPL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZI7-1", "protein_name": "Regulator of nonsense transcripts 3B", "gene_name": "UPF3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15880-1", "protein_name": "Small ribosomal subunit protein uS5", "gene_name": "RPS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62750-1", "protein_name": "Large ribosomal subunit protein uL23", "gene_name": "RPL23A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62280-1", "protein_name": "Small ribosomal subunit protein uS17", "gene_name": "RPS11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62249-1", "protein_name": "Small ribosomal subunit protein uS9", "gene_name": "RPS16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50914-1", "protein_name": "Large ribosomal subunit protein eL14", "gene_name": "RPL14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62906-1", "protein_name": "Large ribosomal subunit protein uL1", "gene_name": "RPL10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23396-1", "protein_name": "Small ribosomal subunit protein uS3", "gene_name": "RPS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63151-1", "protein_name": "Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform", "gene_name": "PPP2R2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A72-1", "protein_name": "Protein mago nashi homolog 2", "gene_name": "MAGOHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62841-1", "protein_name": "Small ribosomal subunit protein uS19", "gene_name": "RPS15", "tax_name": "Human" }, { "uniprot_canonical_ac": "C0HME6-1", "protein_name": "RPL36 alternative reading frame protein", "gene_name": "RPL36", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62829-1", "protein_name": "Large ribosomal subunit protein uL14", "gene_name": "RPL23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32969-1", "protein_name": "Large ribosomal subunit protein uL6", "gene_name": "RPL9P7; RPL9P8; RPL9P9; RPL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30050-1", "protein_name": "Large ribosomal subunit protein uL11", "gene_name": "RPL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q04637-1", "protein_name": "Eukaryotic translation initiation factor 4 gamma 1", "gene_name": "EIF4G1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62266-1", "protein_name": "Small ribosomal subunit protein uS12", "gene_name": "RPS23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46777-1", "protein_name": "Large ribosomal subunit protein uL18", "gene_name": "RPL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96Q15-1", "protein_name": "Serine/threonine-protein kinase SMG1", "gene_name": "SMG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62753-1", "protein_name": "Small ribosomal subunit protein eS6", "gene_name": "RPS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27635-1", "protein_name": "Large ribosomal subunit protein uL16", "gene_name": "RPL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62913-1", "protein_name": "Large ribosomal subunit protein uL5", "gene_name": "RPL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36578-1", "protein_name": "Large ribosomal subunit protein uL4", "gene_name": "RPL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HAU5-1", "protein_name": "Regulator of nonsense transcripts 2", "gene_name": "UPF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5S9-1", "protein_name": "RNA-binding protein 8A", "gene_name": "RBM8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15234-1", "protein_name": "Protein CASC3", "gene_name": "CASC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05388-1", "protein_name": "Large ribosomal subunit protein uL10", "gene_name": "RPLP0", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46779-1", "protein_name": "Large ribosomal subunit protein eL28", "gene_name": "RPL28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62857-1", "protein_name": "Small ribosomal subunit protein eS28", "gene_name": "RPS28", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPJ4-1", "protein_name": "Proline-rich nuclear receptor coactivator 2", "gene_name": "PNRC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15170-1", "protein_name": "Eukaryotic peptide chain release factor GTP-binding subunit ERF3A", "gene_name": "GSPT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62495-1", "protein_name": "Eukaryotic peptide chain release factor subunit 1", "gene_name": "ETF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61313-1", "protein_name": "Large ribosomal subunit protein eL15", "gene_name": "RPL15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62081-1", "protein_name": "Small ribosomal subunit protein eS7", "gene_name": "RPS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71UM5-1", "protein_name": "Ribosomal protein eS27-like", "gene_name": "RPS27L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30153-1", "protein_name": "Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform", "gene_name": "PPP2R1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67775-1", "protein_name": "Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform", "gene_name": "PPP2CA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92900-1", "protein_name": "Regulator of nonsense transcripts 1", "gene_name": "UPF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P18621", "url": "https://www.uniprot.org/uniprotkb/P18621" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 2335, "end_pos": 2335, "sequence_org": "D", "sequence_mut": "A", "comment": "Loss of function.", "evidence": [ { "database": "UniProtKB", "id": "Q96Q15", "url": "https://www.uniprot.org/uniprotkb/Q96Q15" }, { "database": "PubMed", "id": "11544179", "url": "https://pubmed.ncbi.nlm.nih.gov/11544179" }, { "database": "PubMed", "id": "15175154", "url": "https://pubmed.ncbi.nlm.nih.gov/15175154" }, { "database": "PubMed", "id": "11331269", "url": "https://pubmed.ncbi.nlm.nih.gov/11331269" } ], "uniprot_canonical_ac": "Q96Q15-1" }, { "start_pos": 1089, "end_pos": 1089, "sequence_org": "S", "sequence_mut": "A", "comment": "Impairs association with UPF2, SMG1 and SMG7 and impairs phosphorylation; when associated with A-1084, A-1107 and A-1127.", "evidence": [ { "database": "UniProtKB", "id": "Q92900", "url": "https://www.uniprot.org/uniprotkb/Q92900" }, { "database": "PubMed", "id": "11544179", "url": "https://pubmed.ncbi.nlm.nih.gov/11544179" }, { "database": "PubMed", "id": "16452507", "url": "https://pubmed.ncbi.nlm.nih.gov/16452507" } ], "uniprot_canonical_ac": "Q92900-1" }, { "start_pos": 1089, "end_pos": 1089, "sequence_org": "S", "sequence_mut": "A", "comment": "Still phosphorylated but with less efficiency.", "evidence": [ { "database": "UniProtKB", "id": "Q92900", "url": "https://www.uniprot.org/uniprotkb/Q92900" }, { "database": "PubMed", "id": "11544179", "url": "https://pubmed.ncbi.nlm.nih.gov/11544179" }, { "database": "PubMed", "id": "16452507", "url": "https://pubmed.ncbi.nlm.nih.gov/16452507" } ], "uniprot_canonical_ac": "Q92900-1" }, { "start_pos": 1107, "end_pos": 1107, "sequence_org": "S", "sequence_mut": "A", "comment": "Impairs association with UPF2, SMG1 and SMG7 and impairs phosphorylation; when associated with A-1084, A-1089 and A-1127.", "evidence": [ { "database": "UniProtKB", "id": "Q92900", "url": "https://www.uniprot.org/uniprotkb/Q92900" }, { "database": "PubMed", "id": "11544179", "url": "https://pubmed.ncbi.nlm.nih.gov/11544179" }, { "database": "PubMed", "id": "16452507", "url": "https://pubmed.ncbi.nlm.nih.gov/16452507" } ], "uniprot_canonical_ac": "Q92900-1" }, { "start_pos": 1107, "end_pos": 1107, "sequence_org": "S", "sequence_mut": "A", "comment": "Impairs phosphorylation.", "evidence": [ { "database": "UniProtKB", "id": "Q92900", "url": "https://www.uniprot.org/uniprotkb/Q92900" }, { "database": "PubMed", "id": "11544179", "url": "https://pubmed.ncbi.nlm.nih.gov/11544179" }, { "database": "PubMed", "id": "16452507", "url": "https://pubmed.ncbi.nlm.nih.gov/16452507" } ], "uniprot_canonical_ac": "Q92900-1" }, { "start_pos": 1108, "end_pos": 1108, "sequence_org": "Q", "sequence_mut": "N", "comment": "Impairs phosphorylation.", "evidence": [ { "database": "UniProtKB", "id": "Q92900", "url": "https://www.uniprot.org/uniprotkb/Q92900" }, { "database": "PubMed", "id": "11544179", "url": "https://pubmed.ncbi.nlm.nih.gov/11544179" } ], "uniprot_canonical_ac": "Q92900-1" } ], "phosphorylation": [ { "start_pos": 1089, "end_pos": 1089, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q92900", "url": "https://www.uniprot.org/uniprotkb/Q92900" }, { "database": "PubMed", "id": "16452507", "url": "https://pubmed.ncbi.nlm.nih.gov/16452507" }, { "database": "PubMed", "id": "11544179", "url": "https://pubmed.ncbi.nlm.nih.gov/11544179" }, { "database": "PRO", "id": "Q92900", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=Q92900" }, { "database": "iPTMnet", "id": "Q92900", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q92900" } ], "site_lbl": "Ser1089", "uniprot_canonical_ac": "Q92900-1" }, { "start_pos": 1107, "end_pos": 1107, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q92900", "url": "https://www.uniprot.org/uniprotkb/Q92900" }, { "database": "PubMed", "id": "23186163", "url": "https://pubmed.ncbi.nlm.nih.gov/23186163" }, { "database": "PubMed", "id": "19690332", "url": "https://pubmed.ncbi.nlm.nih.gov/19690332" }, { "database": "PubMed", "id": "16452507", "url": "https://pubmed.ncbi.nlm.nih.gov/16452507" }, { "database": "PubMed", "id": "18669648", "url": "https://pubmed.ncbi.nlm.nih.gov/18669648" }, { "database": "PubMed", "id": "11544179", "url": "https://pubmed.ncbi.nlm.nih.gov/11544179" }, { "database": "PubMed", "id": "20068231", "url": "https://pubmed.ncbi.nlm.nih.gov/20068231" }, { "database": "PubMed", "id": "17525332", "url": "https://pubmed.ncbi.nlm.nih.gov/17525332" }, { "database": "PubMed", "id": "21406692", "url": "https://pubmed.ncbi.nlm.nih.gov/21406692" }, { "database": "PRO", "id": "Q92900", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=Q92900" }, { "database": "iPTMnet", "id": "Q92900", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q92900" } ], "site_lbl": "Ser1107", "uniprot_canonical_ac": "Q92900-1" } ], "record_id": "pubmed.11544179", "abstract": "", "glycosylation": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 116 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Communication of the position of exon-exon junctions to the mRNA surveillance machinery by the protein RNPS1.", "journal": "Science (New York, N.Y.)", "date": "2001", "authors": "Lykke-Andersen J, Shu MD, Steitz JA", "reference": { "type": "PubMed", "id": "11546874", "url": "https://pubmed.ncbi.nlm.nih.gov/11546874" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P18621-1", "protein_name": "Large ribosomal subunit protein uL22", "gene_name": "RPL17", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H1J1-1", "protein_name": "Regulator of nonsense transcripts 3A", "gene_name": "UPF3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46776-1", "protein_name": "Large ribosomal subunit protein uL15", "gene_name": "RPL27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46782-1", "protein_name": "Small ribosomal subunit protein uS7", "gene_name": "RPS5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47914-1", "protein_name": "Large ribosomal subunit protein eL29", "gene_name": "RPL29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62244-1", "protein_name": "Small ribosomal subunit protein uS8", "gene_name": "RPS15A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22090-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 1", "gene_name": "RPS4Y1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P5R6-1", "protein_name": "Ribosomal protein eL22-like", "gene_name": "RPL22L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08708-1", "protein_name": "Small ribosomal subunit protein eS17", "gene_name": "RPS17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46783-1", "protein_name": "Small ribosomal subunit protein eS10", "gene_name": "RPS10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62917-1", "protein_name": "Large ribosomal subunit protein uL2", "gene_name": "RPL8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25398-1", "protein_name": "Small ribosomal subunit protein eS12", "gene_name": "RPS12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46781-1", "protein_name": "Small ribosomal subunit protein uS4", "gene_name": "RPS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62424-1", "protein_name": "Large ribosomal subunit protein eL8", "gene_name": "RPL7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62701-1", "protein_name": "Small ribosomal subunit protein eS4, X isoform", "gene_name": "RPS4X", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63220-1", "protein_name": "Small ribosomal subunit protein eS21", "gene_name": "RPS21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TD47-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 2", "gene_name": "RPS4Y2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11940-1", "protein_name": "Polyadenylate-binding protein 1", "gene_name": "PABPC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07020-1", "protein_name": "Large ribosomal subunit protein eL18", "gene_name": "RPL18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35268-1", "protein_name": "Large ribosomal subunit protein eL22", "gene_name": "RPL22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83881-1", "protein_name": "Large ribosomal subunit protein eL42", "gene_name": "RPL36A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61353-1", "protein_name": "Large ribosomal subunit protein eL27", "gene_name": "RPL27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNX3-1", "protein_name": "Ribosomal protein uL24-like", "gene_name": "RPL26L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02543-1", "protein_name": "Large ribosomal subunit protein eL20", "gene_name": "RPL18A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40429-1", "protein_name": "Large ribosomal subunit protein uL13", "gene_name": "RPL13A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63173-1", "protein_name": "Large ribosomal subunit protein eL38", "gene_name": "RPL38", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62910-1", "protein_name": "Large ribosomal subunit protein eL32", "gene_name": "RPL32", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39023-1", "protein_name": "Large ribosomal subunit protein uL3", "gene_name": "RPL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18077-1", "protein_name": "Large ribosomal subunit protein eL33", "gene_name": "RPL35A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61254-1", "protein_name": "Large ribosomal subunit protein uL24", "gene_name": "RPL26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84098-1", "protein_name": "Large ribosomal subunit protein eL19", "gene_name": "RPL19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62888-1", "protein_name": "Large ribosomal subunit protein eL30", "gene_name": "RPL30", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83731-1", "protein_name": "Large ribosomal subunit protein eL24", "gene_name": "RPL24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62899-1", "protein_name": "Large ribosomal subunit protein eL31", "gene_name": "RPL31", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62945-1", "protein_name": "Small ribosomal subunit protein eS32", "gene_name": "RPL41", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61927-1", "protein_name": "Large ribosomal subunit protein eL37", "gene_name": "RPL37", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42766-1", "protein_name": "Large ribosomal subunit protein uL29", "gene_name": "RPL35", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05387-1", "protein_name": "Large ribosomal subunit protein P2", "gene_name": "RPLP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92901-1", "protein_name": "Ribosomal protein uL3-like", "gene_name": "RPL3L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46778-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "RPL21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05386-1", "protein_name": "Large ribosomal subunit protein P1", "gene_name": "RPLP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49207-1", "protein_name": "Large ribosomal subunit protein eL34", "gene_name": "RPL34", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62891-1", "protein_name": "Large ribosomal subunit protein eL39", "gene_name": "RPL39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96L21-1", "protein_name": "Ribosomal protein uL16-like", "gene_name": "RPL10L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYB3-1", "protein_name": "Serine/arginine repetitive matrix protein 1", "gene_name": "SRRM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26373-1", "protein_name": "Large ribosomal subunit protein eL13", "gene_name": "RPL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86US8-1", "protein_name": "Telomerase-binding protein EST1A", "gene_name": "SMG6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYD1-1", "protein_name": "Eukaryotic peptide chain release factor GTP-binding subunit ERF3B", "gene_name": "GSPT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60866-1", "protein_name": "Small ribosomal subunit protein uS10", "gene_name": "RPS20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969Q0-1", "protein_name": "Ribosomal protein eL42-like", "gene_name": "RPL36AL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61247-1", "protein_name": "Small ribosomal subunit protein eS1", "gene_name": "RPS3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62854-1", "protein_name": "Small ribosomal subunit protein eS26", "gene_name": "RPS26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62851-1", "protein_name": "Small ribosomal subunit protein eS25", "gene_name": "RPS25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08865-1", "protein_name": "Small ribosomal subunit protein uS2", "gene_name": "RPSA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62847-1", "protein_name": "Small ribosomal subunit protein eS24", "gene_name": "RPS24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62861-1", "protein_name": "Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein", "gene_name": "FAU", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62241-1", "protein_name": "Small ribosomal subunit protein eS8", "gene_name": "RPS8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62277-1", "protein_name": "Small ribosomal subunit protein uS15", "gene_name": "RPS13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39019-1", "protein_name": "Small ribosomal subunit protein eS19", "gene_name": "RPS19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92540-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG7", "gene_name": "SMG7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPR3-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG5", "gene_name": "SMG5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62269-1", "protein_name": "Small ribosomal subunit protein uS13", "gene_name": "RPS18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02878-1", "protein_name": "Large ribosomal subunit protein eL6", "gene_name": "RPL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62273-1", "protein_name": "Small ribosomal subunit protein uS14", "gene_name": "RPS29", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8ND04-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG8", "gene_name": "SMG8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPI6-1", "protein_name": "mRNA-decapping enzyme 1A", "gene_name": "DCP1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBU9-1", "protein_name": "Nuclear RNA export factor 1", "gene_name": "NXF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42677-1", "protein_name": "Small ribosomal subunit protein eS27", "gene_name": "RPS27", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38919-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "EIF4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61326-1", "protein_name": "Protein mago nashi homolog", "gene_name": "MAGOH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EH5-1", "protein_name": "Ribosomal protein eL39-like 2", "gene_name": "RPL39L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15287-1", "protein_name": "RNA-binding protein with serine-rich domain 1", "gene_name": "RNPS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0W8-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG9", "gene_name": "SMG9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62263-1", "protein_name": "Small ribosomal subunit protein uS11", "gene_name": "RPS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61513-1", "protein_name": "Large ribosomal subunit protein eL43", "gene_name": "RPL37A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18124-1", "protein_name": "Large ribosomal subunit protein uL30", "gene_name": "RPL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZI7-1", "protein_name": "Regulator of nonsense transcripts 3B", "gene_name": "UPF3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15880-1", "protein_name": "Small ribosomal subunit protein uS5", "gene_name": "RPS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62750-1", "protein_name": "Large ribosomal subunit protein uL23", "gene_name": "RPL23A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62280-1", "protein_name": "Small ribosomal subunit protein uS17", "gene_name": "RPS11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62249-1", "protein_name": "Small ribosomal subunit protein uS9", "gene_name": "RPS16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50914-1", "protein_name": "Large ribosomal subunit protein eL14", "gene_name": "RPL14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62906-1", "protein_name": "Large ribosomal subunit protein uL1", "gene_name": "RPL10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23396-1", "protein_name": "Small ribosomal subunit protein uS3", "gene_name": "RPS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63151-1", "protein_name": "Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform", "gene_name": "PPP2R2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A72-1", "protein_name": "Protein mago nashi homolog 2", "gene_name": "MAGOHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62841-1", "protein_name": "Small ribosomal subunit protein uS19", "gene_name": "RPS15", "tax_name": "Human" }, { "uniprot_canonical_ac": "C0HME6-1", "protein_name": "RPL36 alternative reading frame protein", "gene_name": "RPL36", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62829-1", "protein_name": "Large ribosomal subunit protein uL14", "gene_name": "RPL23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32969-1", "protein_name": "Large ribosomal subunit protein uL6", "gene_name": "RPL9P7; RPL9P8; RPL9P9; RPL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30050-1", "protein_name": "Large ribosomal subunit protein uL11", "gene_name": "RPL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q04637-1", "protein_name": "Eukaryotic translation initiation factor 4 gamma 1", "gene_name": "EIF4G1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62266-1", "protein_name": "Small ribosomal subunit protein uS12", "gene_name": "RPS23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46777-1", "protein_name": "Large ribosomal subunit protein uL18", "gene_name": "RPL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96Q15-1", "protein_name": "Serine/threonine-protein kinase SMG1", "gene_name": "SMG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62753-1", "protein_name": "Small ribosomal subunit protein eS6", "gene_name": "RPS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27635-1", "protein_name": "Large ribosomal subunit protein uL16", "gene_name": "RPL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62913-1", "protein_name": "Large ribosomal subunit protein uL5", "gene_name": "RPL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36578-1", "protein_name": "Large ribosomal subunit protein uL4", "gene_name": "RPL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HAU5-1", "protein_name": "Regulator of nonsense transcripts 2", "gene_name": "UPF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5S9-1", "protein_name": "RNA-binding protein 8A", "gene_name": "RBM8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15234-1", "protein_name": "Protein CASC3", "gene_name": "CASC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05388-1", "protein_name": "Large ribosomal subunit protein uL10", "gene_name": "RPLP0", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46779-1", "protein_name": "Large ribosomal subunit protein eL28", "gene_name": "RPL28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62857-1", "protein_name": "Small ribosomal subunit protein eS28", "gene_name": "RPS28", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPJ4-1", "protein_name": "Proline-rich nuclear receptor coactivator 2", "gene_name": "PNRC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15170-1", "protein_name": "Eukaryotic peptide chain release factor GTP-binding subunit ERF3A", "gene_name": "GSPT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62495-1", "protein_name": "Eukaryotic peptide chain release factor subunit 1", "gene_name": "ETF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61313-1", "protein_name": "Large ribosomal subunit protein eL15", "gene_name": "RPL15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62081-1", "protein_name": "Small ribosomal subunit protein eS7", "gene_name": "RPS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71UM5-1", "protein_name": "Ribosomal protein eS27-like", "gene_name": "RPS27L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30153-1", "protein_name": "Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform", "gene_name": "PPP2R1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67775-1", "protein_name": "Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform", "gene_name": "PPP2CA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92900-1", "protein_name": "Regulator of nonsense transcripts 1", "gene_name": "UPF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P18621", "url": "https://www.uniprot.org/uniprotkb/P18621" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.11546874", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 118 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Evidence for a pioneer round of mRNA translation: mRNAs subject to nonsense-mediated decay in mammalian cells are bound by CBP80 and CBP20.", "journal": "Cell", "date": "2001", "authors": "Ishigaki Y, Li X, Serin G, Maquat LE", "reference": { "type": "PubMed", "id": "11551508", "url": "https://pubmed.ncbi.nlm.nih.gov/11551508" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P18621-1", "protein_name": "Large ribosomal subunit protein uL22", "gene_name": "RPL17", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H1J1-1", "protein_name": "Regulator of nonsense transcripts 3A", "gene_name": "UPF3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46776-1", "protein_name": "Large ribosomal subunit protein uL15", "gene_name": "RPL27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46782-1", "protein_name": "Small ribosomal subunit protein uS7", "gene_name": "RPS5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47914-1", "protein_name": "Large ribosomal subunit protein eL29", "gene_name": "RPL29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62244-1", "protein_name": "Small ribosomal subunit protein uS8", "gene_name": "RPS15A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22090-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 1", "gene_name": "RPS4Y1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P5R6-1", "protein_name": "Ribosomal protein eL22-like", "gene_name": "RPL22L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08708-1", "protein_name": "Small ribosomal subunit protein eS17", "gene_name": "RPS17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46783-1", "protein_name": "Small ribosomal subunit protein eS10", "gene_name": "RPS10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62917-1", "protein_name": "Large ribosomal subunit protein uL2", "gene_name": "RPL8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25398-1", "protein_name": "Small ribosomal subunit protein eS12", "gene_name": "RPS12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46781-1", "protein_name": "Small ribosomal subunit protein uS4", "gene_name": "RPS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62424-1", "protein_name": "Large ribosomal subunit protein eL8", "gene_name": "RPL7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62701-1", "protein_name": "Small ribosomal subunit protein eS4, X isoform", "gene_name": "RPS4X", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63220-1", "protein_name": "Small ribosomal subunit protein eS21", "gene_name": "RPS21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TD47-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 2", "gene_name": "RPS4Y2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11940-1", "protein_name": "Polyadenylate-binding protein 1", "gene_name": "PABPC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07020-1", "protein_name": "Large ribosomal subunit protein eL18", "gene_name": "RPL18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35268-1", "protein_name": "Large ribosomal subunit protein eL22", "gene_name": "RPL22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83881-1", "protein_name": "Large ribosomal subunit protein eL42", "gene_name": "RPL36A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61353-1", "protein_name": "Large ribosomal subunit protein eL27", "gene_name": "RPL27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNX3-1", "protein_name": "Ribosomal protein uL24-like", "gene_name": "RPL26L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02543-1", "protein_name": "Large ribosomal subunit protein eL20", "gene_name": "RPL18A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40429-1", "protein_name": "Large ribosomal subunit protein uL13", "gene_name": "RPL13A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63173-1", "protein_name": "Large ribosomal subunit protein eL38", "gene_name": "RPL38", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62910-1", "protein_name": "Large ribosomal subunit protein eL32", "gene_name": "RPL32", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39023-1", "protein_name": "Large ribosomal subunit protein uL3", "gene_name": "RPL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18077-1", "protein_name": "Large ribosomal subunit protein eL33", "gene_name": "RPL35A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61254-1", "protein_name": "Large ribosomal subunit protein uL24", "gene_name": "RPL26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84098-1", "protein_name": "Large ribosomal subunit protein eL19", "gene_name": "RPL19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62888-1", "protein_name": "Large ribosomal subunit protein eL30", "gene_name": "RPL30", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83731-1", "protein_name": "Large ribosomal subunit protein eL24", "gene_name": "RPL24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62899-1", "protein_name": "Large ribosomal subunit protein eL31", "gene_name": "RPL31", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62945-1", "protein_name": "Small ribosomal subunit protein eS32", "gene_name": "RPL41", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61927-1", "protein_name": "Large ribosomal subunit protein eL37", "gene_name": "RPL37", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42766-1", "protein_name": "Large ribosomal subunit protein uL29", "gene_name": "RPL35", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05387-1", "protein_name": "Large ribosomal subunit protein P2", "gene_name": "RPLP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92901-1", "protein_name": "Ribosomal protein uL3-like", "gene_name": "RPL3L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46778-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "RPL21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05386-1", "protein_name": "Large ribosomal subunit protein P1", "gene_name": "RPLP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49207-1", "protein_name": "Large ribosomal subunit protein eL34", "gene_name": "RPL34", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62891-1", "protein_name": "Large ribosomal subunit protein eL39", "gene_name": "RPL39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96L21-1", "protein_name": "Ribosomal protein uL16-like", "gene_name": "RPL10L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26373-1", "protein_name": "Large ribosomal subunit protein eL13", "gene_name": "RPL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86US8-1", "protein_name": "Telomerase-binding protein EST1A", "gene_name": "SMG6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYD1-1", "protein_name": "Eukaryotic peptide chain release factor GTP-binding subunit ERF3B", "gene_name": "GSPT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60866-1", "protein_name": "Small ribosomal subunit protein uS10", "gene_name": "RPS20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969Q0-1", "protein_name": "Ribosomal protein eL42-like", "gene_name": "RPL36AL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61247-1", "protein_name": "Small ribosomal subunit protein eS1", "gene_name": "RPS3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62854-1", "protein_name": "Small ribosomal subunit protein eS26", "gene_name": "RPS26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62851-1", "protein_name": "Small ribosomal subunit protein eS25", "gene_name": "RPS25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08865-1", "protein_name": "Small ribosomal subunit protein uS2", "gene_name": "RPSA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62847-1", "protein_name": "Small ribosomal subunit protein eS24", "gene_name": "RPS24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62861-1", "protein_name": "Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein", "gene_name": "FAU", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62241-1", "protein_name": "Small ribosomal subunit protein eS8", "gene_name": "RPS8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62277-1", "protein_name": "Small ribosomal subunit protein uS15", "gene_name": "RPS13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39019-1", "protein_name": "Small ribosomal subunit protein eS19", "gene_name": "RPS19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92540-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG7", "gene_name": "SMG7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPR3-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG5", "gene_name": "SMG5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62269-1", "protein_name": "Small ribosomal subunit protein uS13", "gene_name": "RPS18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02878-1", "protein_name": "Large ribosomal subunit protein eL6", "gene_name": "RPL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62273-1", "protein_name": "Small ribosomal subunit protein uS14", "gene_name": "RPS29", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8ND04-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG8", "gene_name": "SMG8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPI6-1", "protein_name": "mRNA-decapping enzyme 1A", "gene_name": "DCP1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42677-1", "protein_name": "Small ribosomal subunit protein eS27", "gene_name": "RPS27", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38919-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "EIF4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61326-1", "protein_name": "Protein mago nashi homolog", "gene_name": "MAGOH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EH5-1", "protein_name": "Ribosomal protein eL39-like 2", "gene_name": "RPL39L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15287-1", "protein_name": "RNA-binding protein with serine-rich domain 1", "gene_name": "RNPS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0W8-1", "protein_name": "Nonsense-mediated mRNA decay factor SMG9", "gene_name": "SMG9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62263-1", "protein_name": "Small ribosomal subunit protein uS11", "gene_name": "RPS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61513-1", "protein_name": "Large ribosomal subunit protein eL43", "gene_name": "RPL37A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18124-1", "protein_name": "Large ribosomal subunit protein uL30", "gene_name": "RPL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZI7-1", "protein_name": "Regulator of nonsense transcripts 3B", "gene_name": "UPF3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15880-1", "protein_name": "Small ribosomal subunit protein uS5", "gene_name": "RPS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62750-1", "protein_name": "Large ribosomal subunit protein uL23", "gene_name": "RPL23A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62280-1", "protein_name": "Small ribosomal subunit protein uS17", "gene_name": "RPS11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62249-1", "protein_name": "Small ribosomal subunit protein uS9", "gene_name": "RPS16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50914-1", "protein_name": "Large ribosomal subunit protein eL14", "gene_name": "RPL14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62906-1", "protein_name": "Large ribosomal subunit protein uL1", "gene_name": "RPL10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23396-1", "protein_name": "Small ribosomal subunit protein uS3", "gene_name": "RPS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63151-1", "protein_name": "Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform", "gene_name": "PPP2R2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A72-1", "protein_name": "Protein mago nashi homolog 2", "gene_name": "MAGOHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62841-1", "protein_name": "Small ribosomal subunit protein uS19", "gene_name": "RPS15", "tax_name": "Human" }, { "uniprot_canonical_ac": "C0HME6-1", "protein_name": "RPL36 alternative reading frame protein", "gene_name": "RPL36", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62829-1", "protein_name": "Large ribosomal subunit protein uL14", "gene_name": "RPL23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32969-1", "protein_name": "Large ribosomal subunit protein uL6", "gene_name": "RPL9P7; RPL9P8; RPL9P9; RPL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30050-1", "protein_name": "Large ribosomal subunit protein uL11", "gene_name": "RPL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q04637-1", "protein_name": "Eukaryotic translation initiation factor 4 gamma 1", "gene_name": "EIF4G1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62266-1", "protein_name": "Small ribosomal subunit protein uS12", "gene_name": "RPS23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46777-1", "protein_name": "Large ribosomal subunit protein uL18", "gene_name": "RPL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96Q15-1", "protein_name": "Serine/threonine-protein kinase SMG1", "gene_name": "SMG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62753-1", "protein_name": "Small ribosomal subunit protein eS6", "gene_name": "RPS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27635-1", "protein_name": "Large ribosomal subunit protein uL16", "gene_name": "RPL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62913-1", "protein_name": "Large ribosomal subunit protein uL5", "gene_name": "RPL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36578-1", "protein_name": "Large ribosomal subunit protein uL4", "gene_name": "RPL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HAU5-1", "protein_name": "Regulator of nonsense transcripts 2", "gene_name": "UPF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5S9-1", "protein_name": "RNA-binding protein 8A", "gene_name": "RBM8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15234-1", "protein_name": "Protein CASC3", "gene_name": "CASC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05388-1", "protein_name": "Large ribosomal subunit protein uL10", "gene_name": "RPLP0", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46779-1", "protein_name": "Large ribosomal subunit protein eL28", "gene_name": "RPL28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62857-1", "protein_name": "Small ribosomal subunit protein eS28", "gene_name": "RPS28", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPJ4-1", "protein_name": "Proline-rich nuclear receptor coactivator 2", "gene_name": "PNRC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15170-1", "protein_name": "Eukaryotic peptide chain release factor GTP-binding subunit ERF3A", "gene_name": "GSPT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62495-1", "protein_name": "Eukaryotic peptide chain release factor subunit 1", "gene_name": "ETF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61313-1", "protein_name": "Large ribosomal subunit protein eL15", "gene_name": "RPL15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62081-1", "protein_name": "Small ribosomal subunit protein eS7", "gene_name": "RPS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71UM5-1", "protein_name": "Ribosomal protein eS27-like", "gene_name": "RPS27L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30153-1", "protein_name": "Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform", "gene_name": "PPP2R1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67775-1", "protein_name": "Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform", "gene_name": "PPP2CA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92900-1", "protein_name": "Regulator of nonsense transcripts 1", "gene_name": "UPF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P18621", "url": "https://www.uniprot.org/uniprotkb/P18621" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.11551508", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 116 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "CCAAT/enhancer-binding protein-beta is a mediator of the nutrient-sensing response pathway that activates the human asparagine synthetase gene.", "journal": "The Journal of biological chemistry", "date": "2001", "authors": "Siu F, Chen C, Zhong C, Kilberg MS", "reference": { "type": "PubMed", "id": "11677247", "url": "https://pubmed.ncbi.nlm.nih.gov/11677247" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P18621-1", "protein_name": "Large ribosomal subunit protein uL22", "gene_name": "RPL17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46776-1", "protein_name": "Large ribosomal subunit protein uL15", "gene_name": "RPL27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46782-1", "protein_name": "Small ribosomal subunit protein uS7", "gene_name": "RPS5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47914-1", "protein_name": "Large ribosomal subunit protein eL29", "gene_name": "RPL29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62244-1", "protein_name": "Small ribosomal subunit protein uS8", "gene_name": "RPS15A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22090-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 1", "gene_name": "RPS4Y1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P5R6-1", "protein_name": "Ribosomal protein eL22-like", "gene_name": "RPL22L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08708-1", "protein_name": "Small ribosomal subunit protein eS17", "gene_name": "RPS17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46783-1", "protein_name": "Small ribosomal subunit protein eS10", "gene_name": "RPS10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62917-1", "protein_name": "Large ribosomal subunit protein uL2", "gene_name": "RPL8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25398-1", "protein_name": "Small ribosomal subunit protein eS12", "gene_name": "RPS12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46781-1", "protein_name": "Small ribosomal subunit protein uS4", "gene_name": "RPS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62424-1", "protein_name": "Large ribosomal subunit protein eL8", "gene_name": "RPL7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62701-1", "protein_name": "Small ribosomal subunit protein eS4, X isoform", "gene_name": "RPS4X", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63220-1", "protein_name": "Small ribosomal subunit protein eS21", "gene_name": "RPS21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TD47-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 2", "gene_name": "RPS4Y2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96RU7-1", "protein_name": "Tribbles homolog 3", "gene_name": "TRIB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08243-1", "protein_name": "Asparagine synthetase [glutamine-hydrolyzing]", "gene_name": "ASNS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53567-1", "protein_name": "CCAAT/enhancer-binding protein gamma", "gene_name": "CEBPG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18847-1", "protein_name": "Cyclic AMP-dependent transcription factor ATF-3", "gene_name": "ATF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35638-1", "protein_name": "DNA damage-inducible transcript 3 protein", "gene_name": "DDIT3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15336-1", "protein_name": "Cyclic AMP-dependent transcription factor ATF-2", "gene_name": "ATF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18848-1", "protein_name": "Cyclic AMP-dependent transcription factor ATF-4", "gene_name": "ATF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07020-1", "protein_name": "Large ribosomal subunit protein eL18", "gene_name": "RPL18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35268-1", "protein_name": "Large ribosomal subunit protein eL22", "gene_name": "RPL22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83881-1", "protein_name": "Large ribosomal subunit protein eL42", "gene_name": "RPL36A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61353-1", "protein_name": "Large ribosomal subunit protein eL27", "gene_name": "RPL27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNX3-1", "protein_name": "Ribosomal protein uL24-like", "gene_name": "RPL26L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02543-1", "protein_name": "Large ribosomal subunit protein eL20", "gene_name": "RPL18A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40429-1", "protein_name": "Large ribosomal subunit protein uL13", "gene_name": "RPL13A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63173-1", "protein_name": "Large ribosomal subunit protein eL38", "gene_name": "RPL38", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62910-1", "protein_name": "Large ribosomal subunit protein eL32", "gene_name": "RPL32", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39023-1", "protein_name": "Large ribosomal subunit protein uL3", "gene_name": "RPL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18077-1", "protein_name": "Large ribosomal subunit protein eL33", "gene_name": "RPL35A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61254-1", "protein_name": "Large ribosomal subunit protein uL24", "gene_name": "RPL26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84098-1", "protein_name": "Large ribosomal subunit protein eL19", "gene_name": "RPL19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62888-1", "protein_name": "Large ribosomal subunit protein eL30", "gene_name": "RPL30", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83731-1", "protein_name": "Large ribosomal subunit protein eL24", "gene_name": "RPL24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62899-1", "protein_name": "Large ribosomal subunit protein eL31", "gene_name": "RPL31", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62945-1", "protein_name": "Small ribosomal subunit protein eS32", "gene_name": "RPL41", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61927-1", "protein_name": "Large ribosomal subunit protein eL37", "gene_name": "RPL37", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42766-1", "protein_name": "Large ribosomal subunit protein uL29", "gene_name": "RPL35", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05387-1", "protein_name": "Large ribosomal subunit protein P2", "gene_name": "RPLP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92901-1", "protein_name": "Ribosomal protein uL3-like", "gene_name": "RPL3L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46778-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "RPL21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05386-1", "protein_name": "Large ribosomal subunit protein P1", "gene_name": "RPLP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49207-1", "protein_name": "Large ribosomal subunit protein eL34", "gene_name": "RPL34", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62891-1", "protein_name": "Large ribosomal subunit protein eL39", "gene_name": "RPL39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96L21-1", "protein_name": "Ribosomal protein uL16-like", "gene_name": "RPL10L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26373-1", "protein_name": "Large ribosomal subunit protein eL13", "gene_name": "RPL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60866-1", "protein_name": "Small ribosomal subunit protein uS10", "gene_name": "RPS20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969Q0-1", "protein_name": "Ribosomal protein eL42-like", "gene_name": "RPL36AL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61247-1", "protein_name": "Small ribosomal subunit protein eS1", "gene_name": "RPS3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P2X3-1", "protein_name": "Protein IMPACT", "gene_name": "IMPACT", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62854-1", "protein_name": "Small ribosomal subunit protein eS26", "gene_name": "RPS26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62851-1", "protein_name": "Small ribosomal subunit protein eS25", "gene_name": "RPS25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08865-1", "protein_name": "Small ribosomal subunit protein uS2", "gene_name": "RPSA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62847-1", "protein_name": "Small ribosomal subunit protein eS24", "gene_name": "RPS24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62861-1", "protein_name": "Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein", "gene_name": "FAU", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62241-1", "protein_name": "Small ribosomal subunit protein eS8", "gene_name": "RPS8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62277-1", "protein_name": "Small ribosomal subunit protein uS15", "gene_name": "RPS13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39019-1", "protein_name": "Small ribosomal subunit protein eS19", "gene_name": "RPS19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62269-1", "protein_name": "Small ribosomal subunit protein uS13", "gene_name": "RPS18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02878-1", "protein_name": "Large ribosomal subunit protein eL6", "gene_name": "RPL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62273-1", "protein_name": "Small ribosomal subunit protein uS14", "gene_name": "RPS29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17676-1", "protein_name": "CCAAT/enhancer-binding protein beta", "gene_name": "CEBPB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20042-1", "protein_name": "Eukaryotic translation initiation factor 2 subunit 2", "gene_name": "EIF2S2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42677-1", "protein_name": "Small ribosomal subunit protein eS27", "gene_name": "RPS27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EH5-1", "protein_name": "Ribosomal protein eL39-like 2", "gene_name": "RPL39L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62263-1", "protein_name": "Small ribosomal subunit protein uS11", "gene_name": "RPS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61513-1", "protein_name": "Large ribosomal subunit protein eL43", "gene_name": "RPL37A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18124-1", "protein_name": "Large ribosomal subunit protein uL30", "gene_name": "RPL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15880-1", "protein_name": "Small ribosomal subunit protein uS5", "gene_name": "RPS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62750-1", "protein_name": "Large ribosomal subunit protein uL23", "gene_name": "RPL23A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62280-1", "protein_name": "Small ribosomal subunit protein uS17", "gene_name": "RPS11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62249-1", "protein_name": "Small ribosomal subunit protein uS9", "gene_name": "RPS16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50914-1", "protein_name": "Large ribosomal subunit protein eL14", "gene_name": "RPL14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62906-1", "protein_name": "Large ribosomal subunit protein uL1", "gene_name": "RPL10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23396-1", "protein_name": "Small ribosomal subunit protein uS3", "gene_name": "RPS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05198-1", "protein_name": "Eukaryotic translation initiation factor 2 subunit 1", "gene_name": "EIF2S1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62841-1", "protein_name": "Small ribosomal subunit protein uS19", "gene_name": "RPS15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92616-1", "protein_name": "Stalled ribosome sensor GCN1", "gene_name": "GCN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "C0HME6-1", "protein_name": "RPL36 alternative reading frame protein", "gene_name": "RPL36", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62829-1", "protein_name": "Large ribosomal subunit protein uL14", "gene_name": "RPL23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32969-1", "protein_name": "Large ribosomal subunit protein uL6", "gene_name": "RPL9P7; RPL9P8; RPL9P9; RPL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30050-1", "protein_name": "Large ribosomal subunit protein uL11", "gene_name": "RPL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62266-1", "protein_name": "Small ribosomal subunit protein uS12", "gene_name": "RPS23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46777-1", "protein_name": "Large ribosomal subunit protein uL18", "gene_name": "RPL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P2K8-1", "protein_name": "eIF-2-alpha kinase GCN2", "gene_name": "EIF2AK4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41091-1", "protein_name": "Eukaryotic translation initiation factor 2 subunit 3", "gene_name": "EIF2S3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62753-1", "protein_name": "Small ribosomal subunit protein eS6", "gene_name": "RPS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27635-1", "protein_name": "Large ribosomal subunit protein uL16", "gene_name": "RPL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62913-1", "protein_name": "Large ribosomal subunit protein uL5", "gene_name": "RPL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36578-1", "protein_name": "Large ribosomal subunit protein uL4", "gene_name": "RPL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05388-1", "protein_name": "Large ribosomal subunit protein uL10", "gene_name": "RPLP0", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46779-1", "protein_name": "Large ribosomal subunit protein eL28", "gene_name": "RPL28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62857-1", "protein_name": "Small ribosomal subunit protein eS28", "gene_name": "RPS28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61313-1", "protein_name": "Large ribosomal subunit protein eL15", "gene_name": "RPL15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62081-1", "protein_name": "Small ribosomal subunit protein eS7", "gene_name": "RPS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71UM5-1", "protein_name": "Ribosomal protein eS27-like", "gene_name": "RPS27L", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P18621", "url": "https://www.uniprot.org/uniprotkb/P18621" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.11677247", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 102 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Inhibition of CHOP translation by a peptide encoded by an open reading frame localized in the chop 5'UTR.", "journal": "Nucleic acids research", "date": "2001", "authors": "Jousse C, Bruhat A, Carraro V, Urano F, Ferrara M, Ron D, Fafournoux P", "reference": { "type": "PubMed", "id": "11691921", "url": "https://pubmed.ncbi.nlm.nih.gov/11691921" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P18621-1", "protein_name": "Large ribosomal subunit protein uL22", "gene_name": "RPL17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46776-1", "protein_name": "Large ribosomal subunit protein uL15", "gene_name": "RPL27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46782-1", "protein_name": "Small ribosomal subunit protein uS7", "gene_name": "RPS5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47914-1", "protein_name": "Large ribosomal subunit protein eL29", "gene_name": "RPL29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62244-1", "protein_name": "Small ribosomal subunit protein uS8", "gene_name": "RPS15A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22090-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 1", "gene_name": "RPS4Y1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P5R6-1", "protein_name": "Ribosomal protein eL22-like", "gene_name": "RPL22L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08708-1", "protein_name": "Small ribosomal subunit protein eS17", "gene_name": "RPS17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46783-1", "protein_name": "Small ribosomal subunit protein eS10", "gene_name": "RPS10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62917-1", "protein_name": "Large ribosomal subunit protein uL2", "gene_name": "RPL8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25398-1", "protein_name": "Small ribosomal subunit protein eS12", "gene_name": "RPS12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46781-1", "protein_name": "Small ribosomal subunit protein uS4", "gene_name": "RPS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62424-1", "protein_name": "Large ribosomal subunit protein eL8", "gene_name": "RPL7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62701-1", "protein_name": "Small ribosomal subunit protein eS4, X isoform", "gene_name": "RPS4X", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63220-1", "protein_name": "Small ribosomal subunit protein eS21", "gene_name": "RPS21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TD47-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 2", "gene_name": "RPS4Y2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96RU7-1", "protein_name": "Tribbles homolog 3", "gene_name": "TRIB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08243-1", "protein_name": "Asparagine synthetase [glutamine-hydrolyzing]", "gene_name": "ASNS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53567-1", "protein_name": "CCAAT/enhancer-binding protein gamma", "gene_name": "CEBPG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18847-1", "protein_name": "Cyclic AMP-dependent transcription factor ATF-3", "gene_name": "ATF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35638-1", "protein_name": "DNA damage-inducible transcript 3 protein", "gene_name": "DDIT3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15336-1", "protein_name": "Cyclic AMP-dependent transcription factor ATF-2", "gene_name": "ATF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18848-1", "protein_name": "Cyclic AMP-dependent transcription factor ATF-4", "gene_name": "ATF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07020-1", "protein_name": "Large ribosomal subunit protein eL18", "gene_name": "RPL18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35268-1", "protein_name": "Large ribosomal subunit protein eL22", "gene_name": "RPL22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83881-1", "protein_name": "Large ribosomal subunit protein eL42", "gene_name": "RPL36A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61353-1", "protein_name": "Large ribosomal subunit protein eL27", "gene_name": "RPL27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNX3-1", "protein_name": "Ribosomal protein uL24-like", "gene_name": "RPL26L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02543-1", "protein_name": "Large ribosomal subunit protein eL20", "gene_name": "RPL18A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40429-1", "protein_name": "Large ribosomal subunit protein uL13", "gene_name": "RPL13A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63173-1", "protein_name": "Large ribosomal subunit protein eL38", "gene_name": "RPL38", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62910-1", "protein_name": "Large ribosomal subunit protein eL32", "gene_name": "RPL32", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39023-1", "protein_name": "Large ribosomal subunit protein uL3", "gene_name": "RPL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18077-1", "protein_name": "Large ribosomal subunit protein eL33", "gene_name": "RPL35A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61254-1", "protein_name": "Large ribosomal subunit protein uL24", "gene_name": "RPL26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84098-1", "protein_name": "Large ribosomal subunit protein eL19", "gene_name": "RPL19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62888-1", "protein_name": "Large ribosomal subunit protein eL30", "gene_name": "RPL30", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83731-1", "protein_name": "Large ribosomal subunit protein eL24", "gene_name": "RPL24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62899-1", "protein_name": "Large ribosomal subunit protein eL31", "gene_name": "RPL31", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62945-1", "protein_name": "Small ribosomal subunit protein eS32", "gene_name": "RPL41", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61927-1", "protein_name": "Large ribosomal subunit protein eL37", "gene_name": "RPL37", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42766-1", "protein_name": "Large ribosomal subunit protein uL29", "gene_name": "RPL35", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05387-1", "protein_name": "Large ribosomal subunit protein P2", "gene_name": "RPLP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92901-1", "protein_name": "Ribosomal protein uL3-like", "gene_name": "RPL3L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46778-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "RPL21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05386-1", "protein_name": "Large ribosomal subunit protein P1", "gene_name": "RPLP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49207-1", "protein_name": "Large ribosomal subunit protein eL34", "gene_name": "RPL34", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62891-1", "protein_name": "Large ribosomal subunit protein eL39", "gene_name": "RPL39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96L21-1", "protein_name": "Ribosomal protein uL16-like", "gene_name": "RPL10L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26373-1", "protein_name": "Large ribosomal subunit protein eL13", "gene_name": "RPL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60866-1", "protein_name": "Small ribosomal subunit protein uS10", "gene_name": "RPS20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969Q0-1", "protein_name": "Ribosomal protein eL42-like", "gene_name": "RPL36AL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61247-1", "protein_name": "Small ribosomal subunit protein eS1", "gene_name": "RPS3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P2X3-1", "protein_name": "Protein IMPACT", "gene_name": "IMPACT", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62854-1", "protein_name": "Small ribosomal subunit protein eS26", "gene_name": "RPS26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62851-1", "protein_name": "Small ribosomal subunit protein eS25", "gene_name": "RPS25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08865-1", "protein_name": "Small ribosomal subunit protein uS2", "gene_name": "RPSA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62847-1", "protein_name": "Small ribosomal subunit protein eS24", "gene_name": "RPS24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62861-1", "protein_name": "Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein", "gene_name": "FAU", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62241-1", "protein_name": "Small ribosomal subunit protein eS8", "gene_name": "RPS8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62277-1", "protein_name": "Small ribosomal subunit protein uS15", "gene_name": "RPS13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39019-1", "protein_name": "Small ribosomal subunit protein eS19", "gene_name": "RPS19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62269-1", "protein_name": "Small ribosomal subunit protein uS13", "gene_name": "RPS18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02878-1", "protein_name": "Large ribosomal subunit protein eL6", "gene_name": "RPL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62273-1", "protein_name": "Small ribosomal subunit protein uS14", "gene_name": "RPS29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17676-1", "protein_name": "CCAAT/enhancer-binding protein beta", "gene_name": "CEBPB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20042-1", "protein_name": "Eukaryotic translation initiation factor 2 subunit 2", "gene_name": "EIF2S2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42677-1", "protein_name": "Small ribosomal subunit protein eS27", "gene_name": "RPS27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EH5-1", "protein_name": "Ribosomal protein eL39-like 2", "gene_name": "RPL39L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62263-1", "protein_name": "Small ribosomal subunit protein uS11", "gene_name": "RPS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61513-1", "protein_name": "Large ribosomal subunit protein eL43", "gene_name": "RPL37A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18124-1", "protein_name": "Large ribosomal subunit protein uL30", "gene_name": "RPL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15880-1", "protein_name": "Small ribosomal subunit protein uS5", "gene_name": "RPS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62750-1", "protein_name": "Large ribosomal subunit protein uL23", "gene_name": "RPL23A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62280-1", "protein_name": "Small ribosomal subunit protein uS17", "gene_name": "RPS11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62249-1", "protein_name": "Small ribosomal subunit protein uS9", "gene_name": "RPS16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50914-1", "protein_name": "Large ribosomal subunit protein eL14", "gene_name": "RPL14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62906-1", "protein_name": "Large ribosomal subunit protein uL1", "gene_name": "RPL10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23396-1", "protein_name": "Small ribosomal subunit protein uS3", "gene_name": "RPS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05198-1", "protein_name": "Eukaryotic translation initiation factor 2 subunit 1", "gene_name": "EIF2S1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62841-1", "protein_name": "Small ribosomal subunit protein uS19", "gene_name": "RPS15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92616-1", "protein_name": "Stalled ribosome sensor GCN1", "gene_name": "GCN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "C0HME6-1", "protein_name": "RPL36 alternative reading frame protein", "gene_name": "RPL36", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62829-1", "protein_name": "Large ribosomal subunit protein uL14", "gene_name": "RPL23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32969-1", "protein_name": "Large ribosomal subunit protein uL6", "gene_name": "RPL9P7; RPL9P8; RPL9P9; RPL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30050-1", "protein_name": "Large ribosomal subunit protein uL11", "gene_name": "RPL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62266-1", "protein_name": "Small ribosomal subunit protein uS12", "gene_name": "RPS23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46777-1", "protein_name": "Large ribosomal subunit protein uL18", "gene_name": "RPL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P2K8-1", "protein_name": "eIF-2-alpha kinase GCN2", "gene_name": "EIF2AK4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41091-1", "protein_name": "Eukaryotic translation initiation factor 2 subunit 3", "gene_name": "EIF2S3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62753-1", "protein_name": "Small ribosomal subunit protein eS6", "gene_name": "RPS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27635-1", "protein_name": "Large ribosomal subunit protein uL16", "gene_name": "RPL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62913-1", "protein_name": "Large ribosomal subunit protein uL5", "gene_name": "RPL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36578-1", "protein_name": "Large ribosomal subunit protein uL4", "gene_name": "RPL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05388-1", "protein_name": "Large ribosomal subunit protein uL10", "gene_name": "RPLP0", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46779-1", "protein_name": "Large ribosomal subunit protein eL28", "gene_name": "RPL28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62857-1", "protein_name": "Small ribosomal subunit protein eS28", "gene_name": "RPS28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61313-1", "protein_name": "Large ribosomal subunit protein eL15", "gene_name": "RPL15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62081-1", "protein_name": "Small ribosomal subunit protein eS7", "gene_name": "RPS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71UM5-1", "protein_name": "Ribosomal protein eS27-like", "gene_name": "RPS27L", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P18621", "url": "https://www.uniprot.org/uniprotkb/P18621" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.11691921", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 102 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A novel influenza A virus mitochondrial protein that induces cell death.", "journal": "Nature medicine", "date": "2001", "authors": "Chen W, Calvo PA, Malide D, Gibbs J, Schubert U, Bacik I, Basta S, O'Neill R, Schickli J, Palese P, Henklein P, Bennink JR, Yewdell JW", "reference": { "type": "PubMed", "id": "11726970", "url": "https://pubmed.ncbi.nlm.nih.gov/11726970" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P18621-1", "protein_name": "Large ribosomal subunit protein uL22", "gene_name": "RPL17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46776-1", "protein_name": "Large ribosomal subunit protein uL15", "gene_name": "RPL27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46782-1", "protein_name": "Small ribosomal subunit protein uS7", "gene_name": "RPS5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47914-1", "protein_name": "Large ribosomal subunit protein eL29", "gene_name": "RPL29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62244-1", "protein_name": "Small ribosomal subunit protein uS8", "gene_name": "RPS15A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22090-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 1", "gene_name": "RPS4Y1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P5R6-1", "protein_name": "Ribosomal protein eL22-like", "gene_name": "RPL22L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08708-1", "protein_name": "Small ribosomal subunit protein eS17", "gene_name": "RPS17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46783-1", "protein_name": "Small ribosomal subunit protein eS10", "gene_name": "RPS10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62917-1", "protein_name": "Large ribosomal subunit protein uL2", "gene_name": "RPL8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25398-1", "protein_name": "Small ribosomal subunit protein eS12", "gene_name": "RPS12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46781-1", "protein_name": "Small ribosomal subunit protein uS4", "gene_name": "RPS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62424-1", "protein_name": "Large ribosomal subunit protein eL8", "gene_name": "RPL7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62701-1", "protein_name": "Small ribosomal subunit protein eS4, X isoform", "gene_name": "RPS4X", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63220-1", "protein_name": "Small ribosomal subunit protein eS21", "gene_name": "RPS21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TD47-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 2", "gene_name": "RPS4Y2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07020-1", "protein_name": "Large ribosomal subunit protein eL18", "gene_name": "RPL18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35268-1", "protein_name": "Large ribosomal subunit protein eL22", "gene_name": "RPL22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83881-1", "protein_name": "Large ribosomal subunit protein eL42", "gene_name": "RPL36A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61353-1", "protein_name": "Large ribosomal subunit protein eL27", "gene_name": "RPL27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNX3-1", "protein_name": "Ribosomal protein uL24-like", "gene_name": "RPL26L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02543-1", "protein_name": "Large ribosomal subunit protein eL20", "gene_name": "RPL18A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40429-1", "protein_name": "Large ribosomal subunit protein uL13", "gene_name": "RPL13A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63173-1", "protein_name": "Large ribosomal subunit protein eL38", "gene_name": "RPL38", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62910-1", "protein_name": "Large ribosomal subunit protein eL32", "gene_name": "RPL32", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39023-1", "protein_name": "Large ribosomal subunit protein uL3", "gene_name": "RPL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18077-1", "protein_name": "Large ribosomal subunit protein eL33", "gene_name": "RPL35A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61254-1", "protein_name": "Large ribosomal subunit protein uL24", "gene_name": "RPL26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84098-1", "protein_name": "Large ribosomal subunit protein eL19", "gene_name": "RPL19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62888-1", "protein_name": "Large ribosomal subunit protein eL30", "gene_name": "RPL30", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83731-1", "protein_name": "Large ribosomal subunit protein eL24", "gene_name": "RPL24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62899-1", "protein_name": "Large ribosomal subunit protein eL31", "gene_name": "RPL31", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62945-1", "protein_name": "Small ribosomal subunit protein eS32", "gene_name": "RPL41", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61927-1", "protein_name": "Large ribosomal subunit protein eL37", "gene_name": "RPL37", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42766-1", "protein_name": "Large ribosomal subunit protein uL29", "gene_name": "RPL35", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05387-1", "protein_name": "Large ribosomal subunit protein P2", "gene_name": "RPLP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92901-1", "protein_name": "Ribosomal protein uL3-like", "gene_name": "RPL3L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46778-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "RPL21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05386-1", "protein_name": "Large ribosomal subunit protein P1", "gene_name": "RPLP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49207-1", "protein_name": "Large ribosomal subunit protein eL34", "gene_name": "RPL34", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62891-1", "protein_name": "Large ribosomal subunit protein eL39", "gene_name": "RPL39", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96L21-1", "protein_name": "Ribosomal protein uL16-like", "gene_name": "RPL10L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26373-1", "protein_name": "Large ribosomal subunit protein eL13", "gene_name": "RPL13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60866-1", "protein_name": "Small ribosomal subunit protein uS10", "gene_name": "RPS20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969Q0-1", "protein_name": "Ribosomal protein eL42-like", "gene_name": "RPL36AL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61247-1", "protein_name": "Small ribosomal subunit protein eS1", "gene_name": "RPS3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62854-1", "protein_name": "Small ribosomal subunit protein eS26", "gene_name": "RPS26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62851-1", "protein_name": "Small ribosomal subunit protein eS25", "gene_name": "RPS25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08865-1", "protein_name": "Small ribosomal subunit protein uS2", "gene_name": "RPSA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62847-1", "protein_name": "Small ribosomal subunit protein eS24", "gene_name": "RPS24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62861-1", "protein_name": "Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein", "gene_name": "FAU", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62241-1", "protein_name": "Small ribosomal subunit protein eS8", "gene_name": "RPS8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62277-1", "protein_name": "Small ribosomal subunit protein uS15", "gene_name": "RPS13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39019-1", "protein_name": "Small ribosomal subunit protein eS19", "gene_name": "RPS19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62269-1", "protein_name": "Small ribosomal subunit protein uS13", "gene_name": "RPS18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02878-1", "protein_name": "Large ribosomal subunit protein eL6", "gene_name": "RPL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62273-1", "protein_name": "Small ribosomal subunit protein uS14", "gene_name": "RPS29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42677-1", "protein_name": "Small ribosomal subunit protein eS27", "gene_name": "RPS27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EH5-1", "protein_name": "Ribosomal protein eL39-like 2", "gene_name": "RPL39L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62263-1", "protein_name": "Small ribosomal subunit protein uS11", "gene_name": "RPS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61513-1", "protein_name": "Large ribosomal subunit protein eL43", "gene_name": "RPL37A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18124-1", "protein_name": "Large ribosomal subunit protein uL30", "gene_name": "RPL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12849-1", "protein_name": "G-rich sequence factor 1", "gene_name": "GRSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15880-1", "protein_name": "Small ribosomal subunit protein uS5", "gene_name": "RPS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62750-1", "protein_name": "Large ribosomal subunit protein uL23", "gene_name": "RPL23A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62280-1", "protein_name": "Small ribosomal subunit protein uS17", "gene_name": "RPS11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62249-1", "protein_name": "Small ribosomal subunit protein uS9", "gene_name": "RPS16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50914-1", "protein_name": "Large ribosomal subunit protein eL14", "gene_name": "RPL14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62906-1", "protein_name": "Large ribosomal subunit protein uL1", "gene_name": "RPL10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23396-1", "protein_name": "Small ribosomal subunit protein uS3", "gene_name": "RPS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62841-1", "protein_name": "Small ribosomal subunit protein uS19", "gene_name": "RPS15", "tax_name": "Human" }, { "uniprot_canonical_ac": "C0HME6-1", "protein_name": "RPL36 alternative reading frame protein", "gene_name": "RPL36", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62829-1", "protein_name": "Large ribosomal subunit protein uL14", "gene_name": "RPL23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32969-1", "protein_name": "Large ribosomal subunit protein uL6", "gene_name": "RPL9P7; RPL9P8; RPL9P9; RPL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30050-1", "protein_name": "Large ribosomal subunit protein uL11", "gene_name": "RPL12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62266-1", "protein_name": "Small ribosomal subunit protein uS12", "gene_name": "RPS23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46777-1", "protein_name": "Large ribosomal subunit protein uL18", "gene_name": "RPL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62753-1", "protein_name": "Small ribosomal subunit protein eS6", "gene_name": "RPS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27635-1", "protein_name": "Large ribosomal subunit protein uL16", "gene_name": "RPL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62913-1", "protein_name": "Large ribosomal subunit protein uL5", "gene_name": "RPL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36578-1", "protein_name": "Large ribosomal subunit protein uL4", "gene_name": "RPL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05388-1", "protein_name": "Large ribosomal subunit protein uL10", "gene_name": "RPLP0", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46779-1", "protein_name": "Large ribosomal subunit protein eL28", "gene_name": "RPL28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62857-1", "protein_name": "Small ribosomal subunit protein eS28", "gene_name": "RPS28", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13217-1", "protein_name": "DnaJ homolog subfamily C member 3", "gene_name": "DNAJC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61313-1", "protein_name": "Large ribosomal subunit protein eL15", "gene_name": "RPL15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62081-1", "protein_name": "Small ribosomal subunit protein eS7", "gene_name": "RPS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71UM5-1", "protein_name": "Ribosomal protein eS27-like", "gene_name": "RPS27L", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P18621", "url": "https://www.uniprot.org/uniprotkb/P18621" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.11726970", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 90 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The human ribosomal protein genes: sequencing and comparative analysis of 73 genes.", "journal": "Genome Res.", "date": "2002", "authors": "Yoshihama Maki, Uechi Tamayo, Asakawa Shuichi, Kawasaki Kazuhiko, Kato Seishi, Higa Sayomi, Maeda Noriko, Minoshima Shinsei, Tanaka Tatsuo, Shimizu Nobuyoshi, Kenmochi Naoya", "reference": { "type": "PubMed", "id": "11875025", "url": "https://pubmed.ncbi.nlm.nih.gov/11875025" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P18621-1", "protein_name": "Large ribosomal subunit protein uL22", "gene_name": "RPL17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46782-1", "protein_name": "Small ribosomal subunit protein uS7", "gene_name": "RPS5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62917-1", "protein_name": "Large ribosomal subunit protein uL2", "gene_name": "RPL8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25398-1", "protein_name": "Small ribosomal subunit protein eS12", "gene_name": "RPS12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46781-1", "protein_name": "Small ribosomal subunit protein uS4", "gene_name": "RPS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63220-1", "protein_name": "Small ribosomal subunit protein eS21", "gene_name": "RPS21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07020-1", "protein_name": "Large ribosomal subunit protein eL18", "gene_name": "RPL18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61353-1", "protein_name": "Large ribosomal subunit protein eL27", "gene_name": "RPL27", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62910-1", "protein_name": "Large ribosomal subunit protein eL32", "gene_name": "RPL32", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61254-1", "protein_name": "Large ribosomal subunit protein uL24", "gene_name": "RPL26", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62888-1", "protein_name": "Large ribosomal subunit protein eL30", "gene_name": "RPL30", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83731-1", "protein_name": "Large ribosomal subunit protein eL24", "gene_name": "RPL24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62899-1", "protein_name": "Large ribosomal subunit protein eL31", "gene_name": "RPL31", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61927-1", "protein_name": "Large ribosomal subunit protein eL37", "gene_name": "RPL37", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05387-1", "protein_name": "Large ribosomal subunit protein P2", "gene_name": "RPLP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46778-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "RPL21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05386-1", "protein_name": "Large ribosomal subunit protein P1", "gene_name": "RPLP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49207-1", "protein_name": "Large ribosomal subunit protein eL34", "gene_name": "RPL34", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62891-1", "protein_name": "Large ribosomal subunit protein eL39", "gene_name": "RPL39", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60866-1", "protein_name": "Small ribosomal subunit protein uS10", "gene_name": "RPS20", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62851-1", "protein_name": "Small ribosomal subunit protein eS25", "gene_name": "RPS25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62273-1", "protein_name": "Small ribosomal subunit protein uS14", "gene_name": "RPS29", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42677-1", "protein_name": "Small ribosomal subunit protein eS27", "gene_name": "RPS27", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62249-1", "protein_name": "Small ribosomal subunit protein uS9", "gene_name": "RPS16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50914-1", "protein_name": "Large ribosomal subunit protein eL14", "gene_name": "RPL14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23396-1", "protein_name": "Small ribosomal subunit protein uS3", "gene_name": "RPS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "C0HME6-1", "protein_name": "RPL36 alternative reading frame protein", "gene_name": "RPL36", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62829-1", "protein_name": "Large ribosomal subunit protein uL14", "gene_name": "RPL23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36578-1", "protein_name": "Large ribosomal subunit protein uL4", "gene_name": "RPL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62857-1", "protein_name": "Small ribosomal subunit protein eS28", "gene_name": "RPS28", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P18621", "url": "https://www.uniprot.org/uniprotkb/P18621" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.11875025", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 31 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] } ]