[ { "title": "E3 ligase TRIM65 alleviates intestinal ischemia/reperfusion injury through inhibition of TOX4-mediated apoptosis.", "journal": "Cell death & disease", "date": "2024-01-11", "authors": "Huang Yingjie, Chen Tao, Jiang Ming, Xiong Chenlu, Mei Chao, Nie Jinping, Zhang Qi, Zhu Qing, Huang Xuan, Zhang Xuekang, Li Yong", "reference": { "type": "PubMed", "id": "38212319", "url": "https://pubmed.ncbi.nlm.nih.gov/38212319" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8BU11-1", "protein_name": "TOX high mobility group box family member 4", "gene_name": "Tox4", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8BFW4-1", "protein_name": "E3 ubiquitin-protein ligase TRIM65", "gene_name": "Trim65", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q8BU11", "url": "https://www.uniprot.org/uniprotkb/Q8BU11" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.38212319", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Generation of mice with a conditional and reporter allele for Tmem100.", "journal": "Genesis", "date": "2010", "authors": "Moon EH, Kim MJ, Ko KS, Kim YS, Seo J, Oh SP, Lee YJ", "reference": { "type": "PubMed", "id": "20848592", "url": "https://pubmed.ncbi.nlm.nih.gov/20848592" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9CQG9-1", "protein_name": "Transmembrane protein 100", "gene_name": "Tmem100", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q9CQG9", "url": "https://www.uniprot.org/uniprotkb/Q9CQG9" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.20848592", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Tmem100, an ALK1 receptor signaling-dependent gene essential for arterial endothelium differentiation and vascular morphogenesis.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2012-07-24", "authors": "Somekawa Satoshi, Imagawa Keiichi, Hayashi Hisaki, Sakabe Masahide, Ioka Tomoko, Sato Genki E, Inada Ken, Iwamoto Takaaki, Mori Toshio, Uemura Shiro, Nakagawa Osamu, Saito Yoshihiko", "reference": { "type": "PubMed", "id": "22783020", "url": "https://pubmed.ncbi.nlm.nih.gov/22783020" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9CQG9-1", "protein_name": "Transmembrane protein 100", "gene_name": "Tmem100", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9NV29-1", "protein_name": "Transmembrane protein 100", "gene_name": "TMEM100", "tax_name": "Human" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q9CQG9", "url": "https://www.uniprot.org/uniprotkb/Q9CQG9" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.22783020", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Distribution of TMEM100 in the mouse and human gastrointestinal tract--a novel marker of enteric nerves.", "journal": "Neuroscience", "date": "2013", "authors": "Eisenman ST, Gibbons SJ, Singh RD, Bernard CE, Wu J, Sarr MG, Kendrick ML, Larson DW, Dozois EJ, Shen KR, Farrugia G", "reference": { "type": "PubMed", "id": "23485812", "url": "https://pubmed.ncbi.nlm.nih.gov/23485812" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9CQG9-1", "protein_name": "Transmembrane protein 100", "gene_name": "Tmem100", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9NV29-1", "protein_name": "Transmembrane protein 100", "gene_name": "TMEM100", "tax_name": "Human" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q9CQG9", "url": "https://www.uniprot.org/uniprotkb/Q9CQG9" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.23485812", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Tmem100 Is a Regulator of TRPA1-TRPV1 Complex and Contributes to Persistent Pain.", "journal": "Neuron", "date": "2015", "authors": "Weng HJ, Patel KN, Jeske NA, Bierbower SM, Zou W, Tiwari V, Zheng Q, Tang Z, Mo GC, Wang Y, Geng Y, Zhang J, Guan Y, Akopian AN, Dong X", "reference": { "type": "PubMed", "id": "25640077", "url": "https://pubmed.ncbi.nlm.nih.gov/25640077" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9CQG9-1", "protein_name": "Transmembrane protein 100", "gene_name": "Tmem100", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q704Y3-1", "protein_name": "Transient receptor potential cation channel subfamily V member 1", "gene_name": "Trpv1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8BLA8-1", "protein_name": "Transient receptor potential cation channel subfamily A member 1", "gene_name": "Trpa1", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q9CQG9", "url": "https://www.uniprot.org/uniprotkb/Q9CQG9" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "mutagenesis": [ { "start_pos": 117, "end_pos": 119, "sequence_org": "KRR", "sequence_mut": "QQQ", "comment": "Abolishes interaction with TRPA1. Increases interaction with TRPV1. Enhances interaction between TRPA1 and TRPV1.", "evidence": [ { "database": "UniProtKB", "id": "Q9CQG9", "url": "https://www.uniprot.org/uniprotkb/Q9CQG9" }, { "database": "PubMed", "id": "25640077", "url": "https://pubmed.ncbi.nlm.nih.gov/25640077" } ], "uniprot_canonical_ac": "Q9CQG9-1" } ], "record_id": "pubmed.25640077", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The TopoVIB-Like protein family is required for meiotic DNA double-strand break formation.", "journal": "Science (New York, N.Y.)", "date": "2016", "authors": "Robert T, Nore A, Brun C, Maffre C, Crimi B, Bourbon HM, de Massy B", "reference": { "type": "PubMed", "id": "26917764", "url": "https://pubmed.ncbi.nlm.nih.gov/26917764" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "J3QMY9-1", "protein_name": "Type 2 DNA topoisomerase 6 subunit B-like", "gene_name": "Top6bl", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9VS36-1", "protein_name": "Meiotic recombination protein P22", "gene_name": "mei-P22", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9WTK8-1", "protein_name": "Meiotic recombination protein SPO11", "gene_name": "Spo11", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8N6T0-6", "protein_name": "Type 2 DNA topoisomerase 6 subunit B-like", "gene_name": "TOP6BL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02721-1", "protein_name": "Meiotic recombination protein REC102", "gene_name": "REC102", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q5Q0E6-1", "protein_name": "Type 2 DNA topoisomerase 6 subunit B-like", "gene_name": "MTOPVIB", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "J3QMY9", "url": "https://www.uniprot.org/uniprotkb/J3QMY9" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.26917764", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "TOPOVIBL-REC114 interaction regulates meiotic DNA double-strand breaks.", "journal": "Nature communications", "date": "2022-11-17", "authors": "Nore Alexandre, Juarez-Martinez Ariadna B, Cl\u00e9ment Julie, Brun Christine, Diagouraga Boubou, Laroussi Hamida, Grey Corinne, Bourbon Henri Marc, Kadlec Jan, Robert Thomas, de Massy Bernard", "reference": { "type": "PubMed", "id": "36396648", "url": "https://pubmed.ncbi.nlm.nih.gov/36396648" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "J3QMY9-1", "protein_name": "Type 2 DNA topoisomerase 6 subunit B-like", "gene_name": "Top6bl", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9CWH4-1", "protein_name": "Meiotic recombination protein REC114", "gene_name": "Rec114", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "J3QMY9", "url": "https://www.uniprot.org/uniprotkb/J3QMY9" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "mutagenesis": [ { "start_pos": 562, "end_pos": 562, "sequence_org": "W", "sequence_mut": "A", "comment": "Abolished interaction with REC114; knocking mice are subfertile due to defects in programmed meiotic DNA double-strand break formation.", "evidence": [ { "database": "UniProtKB", "id": "J3QMY9", "url": "https://www.uniprot.org/uniprotkb/J3QMY9" }, { "database": "PubMed", "id": "36396648", "url": "https://pubmed.ncbi.nlm.nih.gov/36396648" } ], "uniprot_canonical_ac": "J3QMY9-1" } ], "record_id": "pubmed.36396648", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A TOP6BL mutation abolishes meiotic DNA double-strand break formation and causes human infertility.", "journal": "Science bulletin", "date": "2020-12-30", "authors": "Jiao Yuying, Fan Suixing, Jabeen Nazish, Zhang Huan, Khan Ranjha, Murtaza Ghulam, Jiang Hanwei, Ali Asim, Li Yang, Bao Jianqiang, Zhang Beibei, Xu Jianze, Xu Bo, Hussain Hafiz Muhammad Jafar, Zaman Qumar, Khan Ihsan, Bukhari Ihtisham, Iqbal Furhan, Yousaf Ayesha, Dil Sobia, Khan Manan, Ahmad Niaz, Ma Hui, Jiang Xiaohua, Zhang Yuanwei, Shi Qinghua", "reference": { "type": "PubMed", "id": "36732965", "url": "https://pubmed.ncbi.nlm.nih.gov/36732965" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "J3QMY9-1", "protein_name": "Type 2 DNA topoisomerase 6 subunit B-like", "gene_name": "Top6bl", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8N6T0-6", "protein_name": "Type 2 DNA topoisomerase 6 subunit B-like", "gene_name": "TOP6BL", "tax_name": "Human" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "J3QMY9", "url": "https://www.uniprot.org/uniprotkb/J3QMY9" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "mutagenesis": [ { "start_pos": 162, "end_pos": 579, "sequence_org": "EPTLRLDNGVTLVVGFQRYVSKPKLNWSEAHCSRIHPVLGHPAPLFIPDAKADTGLLGELTLTPAAALCPSPKGFSSQLCRISSVSIFLYGPLGLPLLSSDQDQPSTAVFRDTSYFIDWKKYNLFMVPNLDLNLDTQSVLPDVNYKAESPEGNQSQNMNAQGPALLLFLFVDFQSDVPVQQAKIWGLHTLLTAHLSAILSESRSTVQQSIQSAVDQVWQLYHHDAKTQQRLQASLSVAVNSIMSVLTGSTRSSFRKTCLQALEAADTQEFGVKLHRIFYDITQHQFLKHCSCDTEQHLTPEKNISAQNTKDQHKNIAQEFPEESIGQAENKRPKRGSPNHGREESRVLGSARDRSPPKSATRDRELTEVSLTARGSQTQAAHGRAQAAEAASPAGGLEDLWLQEVSNLSEWLNPGHRS", "sequence_mut": "", "comment": "Knockin mice display spermatogenic failure characterized by non-obstructive azoospermia due to defects in programmed meiotic DNA double-strand break formation, leading to meiotic arrest prior to pachytene stage of prophase I.", "evidence": [ { "database": "UniProtKB", "id": "J3QMY9", "url": "https://www.uniprot.org/uniprotkb/J3QMY9" }, { "database": "PubMed", "id": "36732965", "url": "https://pubmed.ncbi.nlm.nih.gov/36732965" } ], "uniprot_canonical_ac": "J3QMY9-1" } ], "record_id": "pubmed.36732965", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The TOPOVIBL meiotic DSB formation protein: new insights from its biochemical and structural characterization.", "journal": "Nucleic acids research", "date": "2024-08-27", "authors": "Diagouraga Boubou, Tambones Izabella, Carivenc Coralie, Bechara Ch\u00e9rine, Nadal Marc, de Massy Bernard, le Maire Albane, Robert Thomas", "reference": { "type": "PubMed", "id": "38966985", "url": "https://pubmed.ncbi.nlm.nih.gov/38966985" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "J3QMY9-1", "protein_name": "Type 2 DNA topoisomerase 6 subunit B-like", "gene_name": "Top6bl", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "J3QMY9", "url": "https://www.uniprot.org/uniprotkb/J3QMY9" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.38966985", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Reconstitution of SPO11-dependent double-strand break formation.", "journal": "Nature", "date": "2025-03", "authors": "Zheng Zhi, Zheng Lyuqin, Arter Meret, Liu Kaixian, Yamada Shintaro, Ontoso David, Kim Soonjoung, Keeney Scott", "reference": { "type": "PubMed", "id": "39972129", "url": "https://pubmed.ncbi.nlm.nih.gov/39972129" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "J3QMY9-1", "protein_name": "Type 2 DNA topoisomerase 6 subunit B-like", "gene_name": "Top6bl", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9WTK8-1", "protein_name": "Meiotic recombination protein SPO11", "gene_name": "Spo11", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "J3QMY9", "url": "https://www.uniprot.org/uniprotkb/J3QMY9" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "mutagenesis": [ { "start_pos": 138, "end_pos": 138, "sequence_org": "Y", "sequence_mut": "F", "comment": "Abolished DNA endonuclease activity.", "evidence": [ { "database": "UniProtKB", "id": "Q9WTK8", "url": "https://www.uniprot.org/uniprotkb/Q9WTK8" }, { "database": "PubMed", "id": "39972125", "url": "https://pubmed.ncbi.nlm.nih.gov/39972125" }, { "database": "PubMed", "id": "39972129", "url": "https://pubmed.ncbi.nlm.nih.gov/39972129" } ], "uniprot_canonical_ac": "Q9WTK8-1" }, { "start_pos": 224, "end_pos": 224, "sequence_org": "E", "sequence_mut": "A", "comment": "Abolished DNA endonuclease activity without affecting ability to bind DNA.", "evidence": [ { "database": "UniProtKB", "id": "Q9WTK8", "url": "https://www.uniprot.org/uniprotkb/Q9WTK8" }, { "database": "PubMed", "id": "39972129", "url": "https://pubmed.ncbi.nlm.nih.gov/39972129" } ], "uniprot_canonical_ac": "Q9WTK8-1" } ], "record_id": "pubmed.39972129", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "SPO11 dimers are sufficient to catalyse DNA double-strand breaks in vitro.", "journal": "Nature", "date": "2025-03", "authors": "Oger C\u00e9dric, Claeys Bouuaert Corentin", "reference": { "type": "PubMed", "id": "39972130", "url": "https://pubmed.ncbi.nlm.nih.gov/39972130" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "J3QMY9-1", "protein_name": "Type 2 DNA topoisomerase 6 subunit B-like", "gene_name": "Top6bl", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9WTK8-1", "protein_name": "Meiotic recombination protein SPO11", "gene_name": "Spo11", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "J3QMY9", "url": "https://www.uniprot.org/uniprotkb/J3QMY9" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "mutagenesis": [ { "start_pos": 137, "end_pos": 138, "sequence_org": "YY", "sequence_mut": "FF", "comment": "Abolished DNA endonuclease activity.", "evidence": [ { "database": "UniProtKB", "id": "Q9WTK8", "url": "https://www.uniprot.org/uniprotkb/Q9WTK8" }, { "database": "PubMed", "id": "39972130", "url": "https://pubmed.ncbi.nlm.nih.gov/39972130" } ], "uniprot_canonical_ac": "Q9WTK8-1" } ], "record_id": "pubmed.39972130", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "TIPE3 is the transfer protein of lipid second messengers that promote cancer.", "journal": "Cancer cell", "date": "2014", "authors": "Fayngerts SA, Wu J, Oxley CL, Liu X, Vourekas A, Cathopoulis T, Wang Z, Cui J, Liu S, Sun H, Lemmon MA, Zhang L, Shi Y, Chen YH", "reference": { "type": "PubMed", "id": "25242044", "url": "https://pubmed.ncbi.nlm.nih.gov/25242044" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q3TBL6-1", "protein_name": "Tumor necrosis factor alpha-induced protein 8-like protein 3", "gene_name": "Tnfaip8l3", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q5GJ75-1", "protein_name": "Tumor necrosis factor alpha-induced protein 8-like protein 3", "gene_name": "TNFAIP8L3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P589-1", "protein_name": "Tumor necrosis factor alpha-induced protein 8-like protein 2", "gene_name": "TNFAIP8L2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WVP5-1", "protein_name": "Tumor necrosis factor alpha-induced protein 8-like protein 1", "gene_name": "TNFAIP8L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95379-1", "protein_name": "Tumor necrosis factor alpha-induced protein 8", "gene_name": "TNFAIP8", "tax_name": "Human" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q3TBL6", "url": "https://www.uniprot.org/uniprotkb/Q3TBL6" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "mutagenesis": [ { "start_pos": 109, "end_pos": 109, "sequence_org": "R", "sequence_mut": "Q", "comment": "Reduces binding to phosphoinositide; when associated with Gln-93.", "evidence": [ { "database": "UniProtKB", "id": "Q3TBL6", "url": "https://www.uniprot.org/uniprotkb/Q3TBL6" }, { "database": "PubMed", "id": "25242044", "url": "https://pubmed.ncbi.nlm.nih.gov/25242044" } ], "uniprot_canonical_ac": "Q3TBL6-1" }, { "start_pos": 33, "end_pos": 33, "sequence_org": "K", "sequence_mut": "Q", "comment": "Reduces binding to phosphoinositide; when associated with Gln-34; Gln-38 and Gln-42.", "evidence": [ { "database": "UniProtKB", "id": "Q3TBL6", "url": "https://www.uniprot.org/uniprotkb/Q3TBL6" }, { "database": "PubMed", "id": "25242044", "url": "https://pubmed.ncbi.nlm.nih.gov/25242044" } ], "uniprot_canonical_ac": "Q3TBL6-1" }, { "start_pos": 34, "end_pos": 34, "sequence_org": "K", "sequence_mut": "Q", "comment": "Reduces binding to phosphoinositide; when associated with Gln-33; Gln-38 and Gln-42.", "evidence": [ { "database": "UniProtKB", "id": "Q3TBL6", "url": "https://www.uniprot.org/uniprotkb/Q3TBL6" }, { "database": "PubMed", "id": "25242044", "url": "https://pubmed.ncbi.nlm.nih.gov/25242044" } ], "uniprot_canonical_ac": "Q3TBL6-1" }, { "start_pos": 38, "end_pos": 38, "sequence_org": "K", "sequence_mut": "Q", "comment": "Reduces binding to phosphoinositide; when associated with Gln-33; Gln-34 and Gln-42.", "evidence": [ { "database": "UniProtKB", "id": "Q3TBL6", "url": "https://www.uniprot.org/uniprotkb/Q3TBL6" }, { "database": "PubMed", "id": "25242044", "url": "https://pubmed.ncbi.nlm.nih.gov/25242044" } ], "uniprot_canonical_ac": "Q3TBL6-1" }, { "start_pos": 42, "end_pos": 42, "sequence_org": "K", "sequence_mut": "Q", "comment": "Reduces binding to phosphoinositide; when associated with Gln-33; Gln-34 and Gln-38.", "evidence": [ { "database": "UniProtKB", "id": "Q3TBL6", "url": "https://www.uniprot.org/uniprotkb/Q3TBL6" }, { "database": "PubMed", "id": "25242044", "url": "https://pubmed.ncbi.nlm.nih.gov/25242044" } ], "uniprot_canonical_ac": "Q3TBL6-1" }, { "start_pos": 60, "end_pos": 60, "sequence_org": "L", "sequence_mut": "W", "comment": "Reduces binding to phosphoinositide.", "evidence": [ { "database": "UniProtKB", "id": "Q3TBL6", "url": "https://www.uniprot.org/uniprotkb/Q3TBL6" }, { "database": "PubMed", "id": "25242044", "url": "https://pubmed.ncbi.nlm.nih.gov/25242044" } ], "uniprot_canonical_ac": "Q3TBL6-1" }, { "start_pos": 93, "end_pos": 93, "sequence_org": "R", "sequence_mut": "Q", "comment": "Reduces binding to phosphoinositide; when associated with Gln-109.", "evidence": [ { "database": "UniProtKB", "id": "Q3TBL6", "url": "https://www.uniprot.org/uniprotkb/Q3TBL6" }, { "database": "PubMed", "id": "25242044", "url": "https://pubmed.ncbi.nlm.nih.gov/25242044" } ], "uniprot_canonical_ac": "Q3TBL6-1" } ], "record_id": "pubmed.25242044", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Identical expression profiling of human and murine TIPE3 protein reveals links to its functions.", "journal": "J. Histochem. Cytochem.", "date": "2015", "authors": "Cui J, Hao C, Zhang W, Shao J, Zhang N, Zhang G, Liu S", "reference": { "type": "PubMed", "id": "25479791", "url": "https://pubmed.ncbi.nlm.nih.gov/25479791" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q3TBL6-1", "protein_name": "Tumor necrosis factor alpha-induced protein 8-like protein 3", "gene_name": "Tnfaip8l3", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q5GJ75-1", "protein_name": "Tumor necrosis factor alpha-induced protein 8-like protein 3", "gene_name": "TNFAIP8L3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P589-1", "protein_name": "Tumor necrosis factor alpha-induced protein 8-like protein 2", "gene_name": "TNFAIP8L2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WVP5-1", "protein_name": "Tumor necrosis factor alpha-induced protein 8-like protein 1", "gene_name": "TNFAIP8L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95379-1", "protein_name": "Tumor necrosis factor alpha-induced protein 8", "gene_name": "TNFAIP8", "tax_name": "Human" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q3TBL6", "url": "https://www.uniprot.org/uniprotkb/Q3TBL6" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.25479791", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Samp1 is a component of TAN lines and is required for nuclear movement.", "journal": "Journal of cell science", "date": "2012", "authors": "Borrego-Pinto J, Jegou T, Osorio DS, Aurade F, Gorjanacz M, Koch B, Mattaj IW, Gomes ER", "reference": { "type": "PubMed", "id": "22349700", "url": "https://pubmed.ncbi.nlm.nih.gov/22349700" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A2A8U2-1", "protein_name": "Transmembrane protein 201", "gene_name": "Tmem201", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8BJS4-1", "protein_name": "SUN domain-containing protein 2", "gene_name": "Sun2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P48678-1", "protein_name": "Prelamin-A/C", "gene_name": "Lmna", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "A2A8U2", "url": "https://www.uniprot.org/uniprotkb/A2A8U2" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.22349700", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Impaired motor function in senescence-accelerated mouse prone 1 (SAMP1).", "journal": "Brain research", "date": "2013", "authors": "Aoyama Y, Kim TY, Yoshimoto T, Niimi K, Takahashi E, Itakura C", "reference": { "type": "PubMed", "id": "23583482", "url": "https://pubmed.ncbi.nlm.nih.gov/23583482" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A2A8U2-1", "protein_name": "Transmembrane protein 201", "gene_name": "Tmem201", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "A2A8U2", "url": "https://www.uniprot.org/uniprotkb/A2A8U2" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.23583482", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "[Morphological changes of neurons and neuroglial cells in the brain of senescence-accelerated prone 1 (SAMP1) mice].", "journal": "Arkhiv patologii", "date": "2014", "authors": "Khudoerkov RM, Sal'kov VN, Sal'nikova OV, Sobolev VB", "reference": { "type": "PubMed", "id": "25051721", "url": "https://pubmed.ncbi.nlm.nih.gov/25051721" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A2A8U2-1", "protein_name": "Transmembrane protein 201", "gene_name": "Tmem201", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "A2A8U2", "url": "https://www.uniprot.org/uniprotkb/A2A8U2" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.25051721", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A novel model of colitis-associated cancer in SAMP1/YitFc mice with Crohn's disease-like ileitis.", "journal": "PloS one", "date": "2017", "authors": "Menghini P, Di Martino L, Lopetuso LR, Corridoni D, Webster JC, Xin W, Arseneau KO, Lam M, Pizarro TT, Cominelli F", "reference": { "type": "PubMed", "id": "28301579", "url": "https://pubmed.ncbi.nlm.nih.gov/28301579" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A2A8U2-1", "protein_name": "Transmembrane protein 201", "gene_name": "Tmem201", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "A2A8U2", "url": "https://www.uniprot.org/uniprotkb/A2A8U2" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.28301579", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Cytoplasmic transfer of heritable elements other than mtDNA from SAMP1 mice into mouse tumor cells suppresses their ability to form tumors in C57BL6 mice.", "journal": "Biochemical and biophysical research communications", "date": "2017", "authors": "Shimizu A, Tani H, Takibuchi G, Ishikawa K, Sakurazawa R, Inoue T, Hashimoto T, Nakada K, Takenaga K, Hayashi JI", "reference": { "type": "PubMed", "id": "28893537", "url": "https://pubmed.ncbi.nlm.nih.gov/28893537" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A2A8U2-1", "protein_name": "Transmembrane protein 201", "gene_name": "Tmem201", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "A2A8U2", "url": "https://www.uniprot.org/uniprotkb/A2A8U2" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.28893537", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Choline Acetyltransferase Induces the Functional Regeneration of the Salivary Gland in Aging SAMP1/Kl -/- Mice.", "journal": "International journal of molecular sciences", "date": "2021", "authors": "Toan NK, Tai NC, Kim SA, Ahn SG", "reference": { "type": "PubMed", "id": "33401680", "url": "https://pubmed.ncbi.nlm.nih.gov/33401680" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A2A8U2-1", "protein_name": "Transmembrane protein 201", "gene_name": "Tmem201", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "A2A8U2", "url": "https://www.uniprot.org/uniprotkb/A2A8U2" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.33401680", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Inner nuclear membrane protein TMEM201 maintains endothelial cell migration and angiogenesis by interacting with the LINC complex.", "journal": "Journal of molecular cell biology", "date": "2022", "authors": "Zhang Y, Kong Y, Guo H, Liu Y, Zang Y, Li J", "reference": { "type": "PubMed", "id": "35311970", "url": "https://pubmed.ncbi.nlm.nih.gov/35311970" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A2A8U2-1", "protein_name": "Transmembrane protein 201", "gene_name": "Tmem201", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "A4IG66-1", "protein_name": "Transmembrane protein 201", "gene_name": "tmem201", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5SNT2-1", "protein_name": "Transmembrane protein 201", "gene_name": "TMEM201", "tax_name": "Human" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "A2A8U2", "url": "https://www.uniprot.org/uniprotkb/A2A8U2" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.35311970", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Transplantation of bone marrow cells from miR150 knockout mice improves senescence-associated humoral immune dysfunction and arterial stiffness.", "journal": "Metabolism: clinical and experimental", "date": "2022", "authors": "Fan J, Wang S, Lu X, Sun Z", "reference": { "type": "PubMed", "id": "35792174", "url": "https://pubmed.ncbi.nlm.nih.gov/35792174" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A2A8U2-1", "protein_name": "Transmembrane protein 201", "gene_name": "Tmem201", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "A2A8U2", "url": "https://www.uniprot.org/uniprotkb/A2A8U2" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.35792174", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Tubulin polyglutamylation stimulates spastin-mediated microtubule severing.", "journal": "The Journal of cell biology", "date": "2010", "authors": "Lacroix B, van Dijk J, Gold ND, Guizetti J, Aldrian-Herrada G, Rogowski K, Gerlich DW, Janke C", "reference": { "type": "PubMed", "id": "20530212", "url": "https://pubmed.ncbi.nlm.nih.gov/20530212" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A4Q9E8-1", "protein_name": "Tubulin polyglutamylase TTLL6", "gene_name": "Ttll6", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9QYY8-1", "protein_name": "Spastin", "gene_name": "Spast", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9UBP0-1", "protein_name": "Spastin", "gene_name": "SPAST", "tax_name": "Human" }, { "uniprot_canonical_ac": "A4Q9F4-1", "protein_name": "Tubulin polyglutamylase TTLL11", "gene_name": "Ttll11", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q80UG8-1", "protein_name": "Tubulin monoglutamylase TTLL4", "gene_name": "Ttll4", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "A4Q9E8", "url": "https://www.uniprot.org/uniprotkb/A4Q9E8" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "mutagenesis": [ { "start_pos": 360, "end_pos": 360, "sequence_org": "S", "sequence_mut": "C", "comment": "Decreased microtubule severing activity.", "evidence": [ { "database": "UniProtKB", "id": "Q9QYY8", "url": "https://www.uniprot.org/uniprotkb/Q9QYY8" }, { "database": "PubMed", "id": "20530212", "url": "https://pubmed.ncbi.nlm.nih.gov/20530212" } ], "uniprot_canonical_ac": "Q9QYY8-1" }, { "start_pos": 553, "end_pos": 553, "sequence_org": "D", "sequence_mut": "A", "comment": "Decreased microtubule severing activity.", "evidence": [ { "database": "UniProtKB", "id": "Q9QYY8", "url": "https://www.uniprot.org/uniprotkb/Q9QYY8" }, { "database": "PubMed", "id": "20530212", "url": "https://pubmed.ncbi.nlm.nih.gov/20530212" } ], "uniprot_canonical_ac": "Q9QYY8-1" } ], "record_id": "pubmed.20530212", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "CEP41 is mutated in Joubert syndrome and is required for tubulin glutamylation at the cilium.", "journal": "Nature genetics", "date": "2012", "authors": "Lee JE, Silhavy JL, Zaki MS, Schroth J, Bielas SL, Marsh SE, Olvera J, Brancati F, Iannicelli M, Ikegami K, Schlossman AM, Merriman B, Attie-Bitach T, Logan CV, Glass IA, Cluckey A, Louie CM, Lee JH, Raynes HR, Rapin I, Castroviejo IP, Setou M, Barbot C, Boltshauser E, Nelson SF, Hildebrandt F, Johnson CA, Doherty DA, Valente EM, Gleeson JG", "reference": { "type": "PubMed", "id": "22246503", "url": "https://pubmed.ncbi.nlm.nih.gov/22246503" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A4Q9E8-1", "protein_name": "Tubulin polyglutamylase TTLL6", "gene_name": "Ttll6", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q6GQN0-1", "protein_name": "Centrosomal protein of 41 kDa", "gene_name": "cep41", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A8CVX7-1", "protein_name": "Tubulin polyglutamylase ttll6", "gene_name": "ttll6", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q9BYV8-1", "protein_name": "Centrosomal protein of 41 kDa", "gene_name": "CEP41", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P2K1-4", "protein_name": "Coiled-coil and C2 domain-containing protein 2A", "gene_name": "CC2D2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N841-1", "protein_name": "Tubulin polyglutamylase TTLL6", "gene_name": "TTLL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99NF3-1", "protein_name": "Centrosomal protein of 41 kDa", "gene_name": "Cep41", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "A4Q9E8", "url": "https://www.uniprot.org/uniprotkb/A4Q9E8" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "snv": [ { "evidence": [ { "id": "rs368178632", "database": "dbSNP", "url": "https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=rs368178632" }, { "id": "rs368178632", "database": "1000Genomes", "url": "https://www.ensembl.org/homo_sapiens/Variation/Explore?v=rs368178632" }, { "id": "rs368178632", "database": "ExAC", "url": "https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=rs368178632" }, { "id": "rs368178632", "database": "TOPMed", "url": "https://www.ncbi.nlm.nih.gov/snp/rs368178632#frequency_tab" }, { "id": "rs368178632", "database": "gnomAD", "url": "http://gnomad.broadinstitute.org/awesome?query=rs368178632" }, { "id": "22246503", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/22246503" }, { "id": "rs200882016", "database": "dbSNP", "url": "https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=rs200882016" }, { "id": "rs200882016", "database": "ExAC", "url": "https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=rs200882016" }, { "id": "rs200882016", "database": "TOPMed", "url": "https://www.ncbi.nlm.nih.gov/snp/rs200882016#frequency_tab" }, { "id": "rs200882016", "database": "gnomAD", "url": "http://gnomad.broadinstitute.org/awesome?query=rs200882016" } ], "glycoeffect": [ "n-glyco-sequon-gain" ], "start_pos": 36, "end_pos": 36, "sequence_org": "M", "sequence_mut": "T", "comment": "Germline mutation passed 1 filters: n-glyco-sequon-gain (NSM->NST).", "chr_id": "7", "chr_pos": "130416957", "ref_nt": "G", "alt_nt": "null", "minor_allelic_frequency": "", "site_lbl": "M36", "keywords": [ "ebi", "germline", "disease" ], "disease": [ { "disease_id": "DOID:0110984", "recommended_name": { "id": "DOID:0110984", "resource": "Disease Ontology", "url": "https://disease-ontology.org/term/DOID:0110984", "name": "Joubert syndrome 15", "description": "A Joubert syndrome characterized by ataxia, hypotonia, delayed psychomotor development, and variable mental retardation that has_material_basis_in homozygous mutation in the CEP41 gene on chromosome 7q32." }, "synonyms": [ { "id": "DOID:0110984", "resource": "Disease Ontology", "url": "https://disease-ontology.org/term/DOID:0110984", "name": "JBTS15", "description": "" }, { "id": "MONDO:0013763", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0013763", "name": "Joubert syndrome 15", "description": "Any Joubert syndrome in which the cause of the disease is a mutation in the CEP41 gene." }, { "id": "MONDO:0013763", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0013763", "name": "CEP41 Joubert syndrome", "description": "" }, { "id": "MONDO:0013763", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0013763", "name": "JBTS15", "description": "" }, { "id": "MONDO:0013763", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0013763", "name": "Joubert syndrome 15", "description": "" }, { "id": "MONDO:0013763", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0013763", "name": "Joubert syndrome caused by mutation in CEP41", "description": "" }, { "id": "MONDO:0013763", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0013763", "name": "Joubert syndrome type 15", "description": "" }, { "id": "MIM:614464", "resource": "MIM", "url": "https://www.omim.org/entry/614464", "name": "Joubert syndrome 15", "description": "Joubert syndrome 15" } ], "unlinked_id_list": [], "evidence": [ { "id": "614464", "database": "MIM", "url": "https://www.omim.org/entry/614464" }, { "id": "0110984", "database": "AGR", "url": "https://www.alliancegenome.org/disease/DOID:0110984" } ] } ], "filter_code": "000000000000100000000.00000000000000.000000000001000000.00001.10.000.100", "uniprot_canonical_ac": "Q9BYV8-1" } ], "record_id": "pubmed.22246503", "abstract": "", "glycosylation": [], "mutagenesis": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Tubulin glycylases and glutamylases have distinct functions in stabilization and motility of ependymal cilia.", "journal": "The Journal of cell biology", "date": "2013", "authors": "Bosch Grau M, Gonzalez Curto G, Rocha C, Magiera MM, Marques Sousa P, Giordano T, Spassky N, Janke C", "reference": { "type": "PubMed", "id": "23897886", "url": "https://pubmed.ncbi.nlm.nih.gov/23897886" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A4Q9E8-1", "protein_name": "Tubulin polyglutamylase TTLL6", "gene_name": "Ttll6", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "A4Q9E5-1", "protein_name": "Tubulin monoglycylase TTLL3", "gene_name": "Ttll3", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "A4Q9F1-1", "protein_name": "Protein monoglycylase TTLL8", "gene_name": "Ttll8", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "A4Q9F4-1", "protein_name": "Tubulin polyglutamylase TTLL11", "gene_name": "Ttll11", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "A4Q9F6-1", "protein_name": "Tubulin polyglutamylase TTLL13", "gene_name": "Ttll13", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P68368-1", "protein_name": "Tubulin alpha-4A chain", "gene_name": "Tuba4a", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P05213-1", "protein_name": "Tubulin alpha-1B chain", "gene_name": "Tuba1b", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P68373-1", "protein_name": "Tubulin alpha-1C chain", "gene_name": "Tuba1c", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P99024-1", "protein_name": "Tubulin beta-5 chain", "gene_name": "Tubb5", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P05214-1", "protein_name": "Tubulin alpha-3 chain", "gene_name": "Tuba3a; Tuba3b", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P68369-1", "protein_name": "Tubulin alpha-1A chain", "gene_name": "Tuba1a", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9ERD7-1", "protein_name": "Tubulin beta-3 chain", "gene_name": "Tubb3", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "A2APC3-1", "protein_name": "Probable tubulin polyglutamylase TTLL9", "gene_name": "Ttll9", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q91V51-1", "protein_name": "Polyglutamylase complex subunit TTLL1", "gene_name": "Ttll1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q7TMM9-1", "protein_name": "Tubulin beta-2A chain", "gene_name": "Tubb2a", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q922F4-1", "protein_name": "Tubulin beta-6 chain", "gene_name": "Tubb6", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9D6F9-1", "protein_name": "Tubulin beta-4A chain", "gene_name": "Tubb4a", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9JJZ2-1", "protein_name": "Tubulin alpha-8 chain", "gene_name": "Tuba8", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "A2AQ07-1", "protein_name": "Tubulin beta-1 chain", "gene_name": "Tubb1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P68372-1", "protein_name": "Tubulin beta-4B chain", "gene_name": "Tubb4b", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9CWF2-1", "protein_name": "Tubulin beta-2B chain", "gene_name": "Tubb2b", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q80UG8-1", "protein_name": "Tubulin monoglutamylase TTLL4", "gene_name": "Ttll4", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "A4Q9E8", "url": "https://www.uniprot.org/uniprotkb/A4Q9E8" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.23897886", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 22 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Glutamylation of the DNA sensor cGAS regulates its binding and synthase activity in antiviral immunity.", "journal": "Nature immunology", "date": "2016", "authors": "Xia P, Ye B, Wang S, Zhu X, Du Y, Xiong Z, Tian Y, Fan Z", "reference": { "type": "PubMed", "id": "26829768", "url": "https://pubmed.ncbi.nlm.nih.gov/26829768" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A4Q9E8-1", "protein_name": "Tubulin polyglutamylase TTLL6", "gene_name": "Ttll6", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8C6L5-1", "protein_name": "Cyclic GMP-AMP synthase", "gene_name": "Cgas", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q09M02-1", "protein_name": "Cytosolic carboxypeptidase-like protein 5", "gene_name": "Agbl5", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q09LZ8-1", "protein_name": "Cytosolic carboxypeptidase 6", "gene_name": "Agbl4", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q80UG8-1", "protein_name": "Tubulin monoglutamylase TTLL4", "gene_name": "Ttll4", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "A4Q9E8", "url": "https://www.uniprot.org/uniprotkb/A4Q9E8" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "mutagenesis": [ { "start_pos": 272, "end_pos": 272, "sequence_org": "E", "sequence_mut": "A", "comment": "Increased DNA-binding activity.", "evidence": [ { "database": "UniProtKB", "id": "Q8C6L5", "url": "https://www.uniprot.org/uniprotkb/Q8C6L5" }, { "database": "PubMed", "id": "26829768", "url": "https://pubmed.ncbi.nlm.nih.gov/26829768" } ], "uniprot_canonical_ac": "Q8C6L5-1" }, { "start_pos": 302, "end_pos": 302, "sequence_org": "E", "sequence_mut": "A", "comment": "Increased nucleotidyltransferase activity.", "evidence": [ { "database": "UniProtKB", "id": "Q8C6L5", "url": "https://www.uniprot.org/uniprotkb/Q8C6L5" }, { "database": "PubMed", "id": "26829768", "url": "https://pubmed.ncbi.nlm.nih.gov/26829768" } ], "uniprot_canonical_ac": "Q8C6L5-1" }, { "start_pos": 252, "end_pos": 252, "sequence_org": "H", "sequence_mut": "S", "comment": "Abolishes deglutamylase activity; when associated with Q-255.", "evidence": [ { "database": "UniProtKB", "id": "Q09M02", "url": "https://www.uniprot.org/uniprotkb/Q09M02" }, { "database": "PubMed", "id": "26829768", "url": "https://pubmed.ncbi.nlm.nih.gov/26829768" }, { "database": "PubMed", "id": "21074048", "url": "https://pubmed.ncbi.nlm.nih.gov/21074048" } ], "uniprot_canonical_ac": "Q09M02-1" }, { "start_pos": 255, "end_pos": 255, "sequence_org": "E", "sequence_mut": "Q", "comment": "Abolishes deglutamylase activity; when associated with S-252.", "evidence": [ { "database": "UniProtKB", "id": "Q09M02", "url": "https://www.uniprot.org/uniprotkb/Q09M02" }, { "database": "PubMed", "id": "21074048", "url": "https://pubmed.ncbi.nlm.nih.gov/21074048" }, { "database": "PubMed", "id": "26829768", "url": "https://pubmed.ncbi.nlm.nih.gov/26829768" } ], "uniprot_canonical_ac": "Q09M02-1" }, { "start_pos": 230, "end_pos": 230, "sequence_org": "H", "sequence_mut": "S", "comment": "Abolishes deglutamylase activity; when associated with Q-233.", "evidence": [ { "database": "UniProtKB", "id": "Q09LZ8", "url": "https://www.uniprot.org/uniprotkb/Q09LZ8" }, { "database": "PubMed", "id": "26829768", "url": "https://pubmed.ncbi.nlm.nih.gov/26829768" }, { "database": "PubMed", "id": "21074048", "url": "https://pubmed.ncbi.nlm.nih.gov/21074048" } ], "uniprot_canonical_ac": "Q09LZ8-1" }, { "start_pos": 233, "end_pos": 233, "sequence_org": "E", "sequence_mut": "Q", "comment": "Abolishes deglutamylase activity; when associated with S-230.", "evidence": [ { "database": "UniProtKB", "id": "Q09LZ8", "url": "https://www.uniprot.org/uniprotkb/Q09LZ8" }, { "database": "PubMed", "id": "21074048", "url": "https://pubmed.ncbi.nlm.nih.gov/21074048" }, { "database": "PubMed", "id": "26829768", "url": "https://pubmed.ncbi.nlm.nih.gov/26829768" } ], "uniprot_canonical_ac": "Q09LZ8-1" } ], "record_id": "pubmed.26829768", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Isolation and characterization of a novel plasma membrane protein, osteoblast induction factor (obif), associated with osteoblast differentiation.", "journal": "BMC developmental biology", "date": "2009", "authors": "Kanamoto T, Mizuhashi K, Terada K, Minami T, Yoshikawa H, Furukawa T", "reference": { "type": "PubMed", "id": "20025746", "url": "https://pubmed.ncbi.nlm.nih.gov/20025746" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8R138-1", "protein_name": "Transmembrane protein 119", "gene_name": "Tmem119", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q4V9L6-1", "protein_name": "Transmembrane protein 119", "gene_name": "TMEM119", "tax_name": "Human" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q8R138", "url": "https://www.uniprot.org/uniprotkb/Q8R138" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.20025746", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Parathyroid hormone-responsive Smad3-related factor, Tmem119, promotes osteoblast differentiation and interacts with the bone morphogenetic protein-Runx2 pathway.", "journal": "The Journal of biological chemistry", "date": "2011", "authors": "Hisa I, Inoue Y, Hendy GN, Canaff L, Kitazawa R, Kitazawa S, Komori T, Sugimoto T, Seino S, Kaji H", "reference": { "type": "PubMed", "id": "21239498", "url": "https://pubmed.ncbi.nlm.nih.gov/21239498" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8R138-1", "protein_name": "Transmembrane protein 119", "gene_name": "Tmem119", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q08775-1", "protein_name": "Runt-related transcription factor 2", "gene_name": "Runx2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P97454-1", "protein_name": "SMAD family member 5", "gene_name": "Smad5", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P70340-1", "protein_name": "SMAD family member 1", "gene_name": "Smad1", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q8R138", "url": "https://www.uniprot.org/uniprotkb/Q8R138" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.21239498", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "OBIF, an osteoblast induction factor, plays an essential role in bone formation in association with osteoblastogenesis.", "journal": "Development, growth & differentiation", "date": "2012", "authors": "Mizuhashi K, Kanamoto T, Ito M, Moriishi T, Muranishi Y, Omori Y, Terada K, Komori T, Furukawa T", "reference": { "type": "PubMed", "id": "22416756", "url": "https://pubmed.ncbi.nlm.nih.gov/22416756" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8R138-1", "protein_name": "Transmembrane protein 119", "gene_name": "Tmem119", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q8R138", "url": "https://www.uniprot.org/uniprotkb/Q8R138" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.22416756", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Interaction of Tmem119 and the bone morphogenetic protein pathway in the commitment of myoblastic into osteoblastic cells.", "journal": "Bone", "date": "2012-07", "authors": "Tanaka Ken-ichiro, Inoue Yoshifumi, Hendy Geoffrey N, Canaff Lucie, Katagiri Takenobu, Kitazawa Riko, Komori Toshihisa, Sugimoto Toshitsugu, Seino Susumu, Kaji Hiroshi", "reference": { "type": "PubMed", "id": "22579779", "url": "https://pubmed.ncbi.nlm.nih.gov/22579779" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8R138-1", "protein_name": "Transmembrane protein 119", "gene_name": "Tmem119", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q8R138", "url": "https://www.uniprot.org/uniprotkb/Q8R138" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.22579779", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Involvement of the osteoinductive factors, Tmem119 and BMP-2, and the ER stress response PERK-eIF2alpha-ATF4 pathway in the commitment of myoblastic into osteoblastic cells.", "journal": "Calcified tissue international", "date": "2014", "authors": "Tanaka K, Kaji H, Yamaguchi T, Kanazawa I, Canaff L, Hendy GN, Sugimoto T", "reference": { "type": "PubMed", "id": "24362451", "url": "https://pubmed.ncbi.nlm.nih.gov/24362451" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8R138-1", "protein_name": "Transmembrane protein 119", "gene_name": "Tmem119", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P12643-1", "protein_name": "Bone morphogenetic protein 2", "gene_name": "BMP2", "tax_name": "Human" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q8R138", "url": "https://www.uniprot.org/uniprotkb/Q8R138" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.24362451", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Obif, a Transmembrane Protein, Is Required for Bone Mineralization and Spermatogenesis in Mice.", "journal": "PloS one", "date": "2015", "authors": "Mizuhashi K, Chaya T, Kanamoto T, Omori Y, Furukawa T", "reference": { "type": "PubMed", "id": "26207632", "url": "https://pubmed.ncbi.nlm.nih.gov/26207632" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8R138-1", "protein_name": "Transmembrane protein 119", "gene_name": "Tmem119", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P08174-1", "protein_name": "Complement decay-accelerating factor", "gene_name": "CD55", "tax_name": "Human" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q8R138", "url": "https://www.uniprot.org/uniprotkb/Q8R138" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "S", "relation": "attached", "comment": "O-linked (Xyl...) (chondroitin sulfate) serine", "icn3d_view": {}, "start_pos": 36, "start_aa": "Ser", "end_pos": 36, "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser36", "evidence": [ { "id": "Q8R138", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8R138#ptm_processing" }, { "id": "26207632", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/26207632" } ], "filter_code": "000000000000000100000.00000000001000.00.01100", "uniprot_canonical_ac": "Q8R138-1" } ], "mutagenesis": [ { "start_pos": 36, "end_pos": 36, "sequence_org": "S", "sequence_mut": "A", "comment": "Loss of glycosylation. No effect on osteoblast mineralization. Loss of glycosylation; when associated with A-43; A-54; A-60 and A-67.", "evidence": [ { "database": "UniProtKB", "id": "Q8R138", "url": "https://www.uniprot.org/uniprotkb/Q8R138" }, { "database": "PubMed", "id": "26207632", "url": "https://pubmed.ncbi.nlm.nih.gov/26207632" } ], "uniprot_canonical_ac": "Q8R138-1" }, { "start_pos": 43, "end_pos": 43, "sequence_org": "S", "sequence_mut": "A", "comment": "No loss of glycosylation. Loss of glycosylation; when associated with A-36; A-54; A-60 and A-67.", "evidence": [ { "database": "UniProtKB", "id": "Q8R138", "url": "https://www.uniprot.org/uniprotkb/Q8R138" }, { "database": "PubMed", "id": "26207632", "url": "https://pubmed.ncbi.nlm.nih.gov/26207632" } ], "uniprot_canonical_ac": "Q8R138-1" }, { "start_pos": 54, "end_pos": 54, "sequence_org": "T", "sequence_mut": "A", "comment": "No loss of glycosylation. Loss of glycosylation; when associated with A-36; A-43; A-60 and A-67.", "evidence": [ { "database": "UniProtKB", "id": "Q8R138", "url": "https://www.uniprot.org/uniprotkb/Q8R138" }, { "database": "PubMed", "id": "26207632", "url": "https://pubmed.ncbi.nlm.nih.gov/26207632" } ], "uniprot_canonical_ac": "Q8R138-1" }, { "start_pos": 60, "end_pos": 60, "sequence_org": "T", "sequence_mut": "A", "comment": "No loss of glycosylation. Loss of glycosylation; when associated with A-36; A-43; A-54 and A-67.", "evidence": [ { "database": "UniProtKB", "id": "Q8R138", "url": "https://www.uniprot.org/uniprotkb/Q8R138" }, { "database": "PubMed", "id": "26207632", "url": "https://pubmed.ncbi.nlm.nih.gov/26207632" } ], "uniprot_canonical_ac": "Q8R138-1" }, { "start_pos": 67, "end_pos": 67, "sequence_org": "T", "sequence_mut": "A", "comment": "No loss of glycosylation. Loss of glycosylation; when associated with A-36; A-43; A-54 and A-60.", "evidence": [ { "database": "UniProtKB", "id": "Q8R138", "url": "https://www.uniprot.org/uniprotkb/Q8R138" }, { "database": "PubMed", "id": "26207632", "url": "https://pubmed.ncbi.nlm.nih.gov/26207632" } ], "uniprot_canonical_ac": "Q8R138-1" } ], "record_id": "pubmed.26207632", "abstract": "", "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl", "filter_code", "uniprot_canonical_ac" ] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl", "filter_code", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Penumbra encodes a novel tetraspanin that is highly expressed in erythroid progenitors and promotes effective erythropoiesis.", "journal": "Blood", "date": "2007", "authors": "Heikens MJ, Cao TM, Morita C, Dehart SL, Tsai S", "reference": { "type": "PubMed", "id": "17158226", "url": "https://pubmed.ncbi.nlm.nih.gov/17158226" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8R3S2-1", "protein_name": "Tetraspanin-33", "gene_name": "Tspan33", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q86UF1-1", "protein_name": "Tetraspanin-33", "gene_name": "TSPAN33", "tax_name": "Human" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q8R3S2", "url": "https://www.uniprot.org/uniprotkb/Q8R3S2" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.17158226", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The TspanC8 subgroup of tetraspanins interacts with A disintegrin and metalloprotease 10 (ADAM10) and regulates its maturation and cell surface expression.", "journal": "J. Biol. Chem.", "date": "2012", "authors": "Haining Elizabeth J, Yang Jing, Bailey Rebecca L, Khan Kabir, Collier Richard, Tsai Schickwann, Watson Steve P, Frampton Jon, Garcia Paloma, Tomlinson Michael G", "reference": { "type": "PubMed", "id": "23035126", "url": "https://pubmed.ncbi.nlm.nih.gov/23035126" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8R3S2-1", "protein_name": "Tetraspanin-33", "gene_name": "Tspan33", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q10741-1", "protein_name": "Disintegrin and metalloproteinase domain-containing protein 10", "gene_name": "ADAM10", "tax_name": "Bovine" }, { "uniprot_canonical_ac": "Q9D7W4-1", "protein_name": "Tetraspanin-17", "gene_name": "Tspan17", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "O35598-1", "protein_name": "Disintegrin and metalloproteinase domain-containing protein 10", "gene_name": "Adam10", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q17QJ5-1", "protein_name": "Tetraspanin-5", "gene_name": "TSPAN5", "tax_name": "Bovine" }, { "uniprot_canonical_ac": "Q8VCF5-1", "protein_name": "Tetraspanin-10", "gene_name": "Tspan10", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q3SYV5-1", "protein_name": "Tetraspanin-33", "gene_name": "TSPAN33", "tax_name": "Bovine" }, { "uniprot_canonical_ac": "Q58DN3-1", "protein_name": "Tetraspanin-17", "gene_name": "TSPAN17", "tax_name": "Bovine" }, { "uniprot_canonical_ac": "F7BWT7-1", "protein_name": "Tetraspanin-15", "gene_name": "Tspan15", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P62080-1", "protein_name": "Tetraspanin-5", "gene_name": "Tspan5", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q1JQA4-1", "protein_name": "Tetraspanin-15", "gene_name": "TSPAN15", "tax_name": "Bovine" }, { "uniprot_canonical_ac": "Q8NG11-1", "protein_name": "Tetraspanin-14", "gene_name": "TSPAN14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8QZY6-1", "protein_name": "Tetraspanin-14", "gene_name": "Tspan14", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q8R3S2", "url": "https://www.uniprot.org/uniprotkb/Q8R3S2" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.23035126", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 13 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The Tetraspanin TSPAN33 Controls TLR-Triggered Macrophage Activation through Modulation of NOTCH Signaling.", "journal": "Journal of immunology (Baltimore, Md. : 1950)", "date": "2016", "authors": "Ruiz-Garcia A, Lopez-Lopez S, Garcia-Ramirez JJ, Baladron V, Ruiz-Hidalgo MJ, Lopez-Sanz L, Ballesteros A, Laborda J, Monsalve EM, Diaz-Guerra MJ", "reference": { "type": "PubMed", "id": "27574297", "url": "https://pubmed.ncbi.nlm.nih.gov/27574297" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8R3S2-1", "protein_name": "Tetraspanin-33", "gene_name": "Tspan33", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q8R3S2", "url": "https://www.uniprot.org/uniprotkb/Q8R3S2" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.27574297", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The thrombospondin-4 gene.", "journal": "Mamm. Genome", "date": "1999", "authors": "Newton G, Weremowicz S, Morton C C, Jenkins N A, Gilbert D J, Copeland N G, Lawler J", "reference": { "type": "PubMed", "id": "10501972", "url": "https://pubmed.ncbi.nlm.nih.gov/10501972" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9Z1T2-1", "protein_name": "Thrombospondin-4", "gene_name": "Thbs4", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q9Z1T2", "url": "https://www.uniprot.org/uniprotkb/Q9Z1T2" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.10501972", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Thrombospondin-4 regulates vascular inflammation and atherogenesis.", "journal": "Circulation research", "date": "2010-11-26", "authors": "Frolova Ella G, Pluskota Elzbieta, Krukovets Irene, Burke Tim, Drumm Carla, Smith Jonathan D, Blech Lauren, Febbraio Maria, Bornstein Paul, Plow Edward F, Stenina Olga I", "reference": { "type": "PubMed", "id": "20884877", "url": "https://pubmed.ncbi.nlm.nih.gov/20884877" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9Z1T2-1", "protein_name": "Thrombospondin-4", "gene_name": "Thbs4", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q9Z1T2", "url": "https://www.uniprot.org/uniprotkb/Q9Z1T2" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.20884877", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Thrombospondin-4 is required for stretch-mediated contractility augmentation in cardiac muscle.", "journal": "Circulation research", "date": "2011-12-09", "authors": "Cingolani Oscar H, Kirk Jonathan A, Seo Kinya, Koitabashi Norimichi, Lee Dong-Ik, Ramirez-Correa Genaro, Bedja Djahida, Barth Andreas S, Moens An L, Kass David A", "reference": { "type": "PubMed", "id": "22034490", "url": "https://pubmed.ncbi.nlm.nih.gov/22034490" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9Z1T2-1", "protein_name": "Thrombospondin-4", "gene_name": "Thbs4", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q9Z1T2", "url": "https://www.uniprot.org/uniprotkb/Q9Z1T2" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.22034490", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Thrombospondin-4 regulates fibrosis and remodeling of the myocardium in response to pressure overload.", "journal": "FASEB journal : official publication of the Federation of American Societies for Experimental Biology", "date": "2012-06", "authors": "Frolova Ella G, Sopko Nikolai, Blech Lauren, Popovic Zoran B, Li Jianbo, Vasanji Amit, Drumm Carla, Krukovets Irene, Jain Mukesh K, Penn Marc S, Plow Edward F, Stenina Olga I", "reference": { "type": "PubMed", "id": "22362893", "url": "https://pubmed.ncbi.nlm.nih.gov/22362893" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9Z1T2-1", "protein_name": "Thrombospondin-4", "gene_name": "Thbs4", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q9Z1T2", "url": "https://www.uniprot.org/uniprotkb/Q9Z1T2" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.22362893", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A thrombospondin-dependent pathway for a protective ER stress response.", "journal": "Cell", "date": "2012-06-08", "authors": "Lynch Jeffrey M, Maillet Marjorie, Vanhoutte Davy, Schloemer Aryn, Sargent Michelle A, Blair N Scott, Lynch Kaari A, Okada Tetsuya, Aronow Bruce J, Osinska Hanna, Prywes Ron, Lorenz John N, Mori Kazutoshi, Lawler Jack, Robbins Jeffrey, Molkentin Jeffery D", "reference": { "type": "PubMed", "id": "22682248", "url": "https://pubmed.ncbi.nlm.nih.gov/22682248" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9Z1T2-1", "protein_name": "Thrombospondin-4", "gene_name": "Thbs4", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "G3V909-1", "protein_name": "Cyclic AMP-dependent transcription factor ATF-6 alpha", "gene_name": "Atf6", "tax_name": "Rat" }, { "uniprot_canonical_ac": "P35441-1", "protein_name": "Thrombospondin-1", "gene_name": "Thbs1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P35443-1", "protein_name": "Thrombospondin-4", "gene_name": "THBS4", "tax_name": "Human" }, { "uniprot_canonical_ac": "F6VAN0-1", "protein_name": "Cyclic AMP-dependent transcription factor ATF-6 alpha", "gene_name": "Atf6", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P18850-1", "protein_name": "Cyclic AMP-dependent transcription factor ATF-6 alpha", "gene_name": "ATF6", "tax_name": "Human" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q9Z1T2", "url": "https://www.uniprot.org/uniprotkb/Q9Z1T2" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.22682248", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Thrombospondin-4 contributes to spinal sensitization and neuropathic pain states.", "journal": "The Journal of neuroscience : the official journal of the Society for Neuroscience", "date": "2012-06-27", "authors": "Kim Doo-Sik, Li Kang-Wu, Boroujerdi Amin, Peter Yu Yanhui, Zhou Chun-Yi, Deng Ping, Park John, Zhang Xia, Lee Joshua, Corpe Michael, Sharp Kelli, Steward Oswald, Eroglu Cagla, Barres Ben, Zaucke Frank, Xu Zao C, Luo Z David", "reference": { "type": "PubMed", "id": "22745497", "url": "https://pubmed.ncbi.nlm.nih.gov/22745497" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9Z1T2-1", "protein_name": "Thrombospondin-4", "gene_name": "Thbs4", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P49744-1", "protein_name": "Thrombospondin-4", "gene_name": "Thbs4", "tax_name": "Rat" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q9Z1T2", "url": "https://www.uniprot.org/uniprotkb/Q9Z1T2" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.22745497", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Protective astrogenesis from the SVZ niche after injury is controlled by Notch modulator Thbs4.", "journal": "Nature", "date": "2013-05-16", "authors": "Benner Eric J, Luciano Dominic, Jo Rebecca, Abdi Khadar, Paez-Gonzalez Patricia, Sheng Huaxin, Warner David S, Liu Chunlei, Eroglu Cagla, Kuo Chay T", "reference": { "type": "PubMed", "id": "23615612", "url": "https://pubmed.ncbi.nlm.nih.gov/23615612" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9Z1T2-1", "protein_name": "Thrombospondin-4", "gene_name": "Thbs4", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q01705-1", "protein_name": "Neurogenic locus notch homolog protein 1", "gene_name": "Notch1", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q9Z1T2", "url": "https://www.uniprot.org/uniprotkb/Q9Z1T2" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.23615612", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Histone methyltransferase MLL4 protects against pressure overload-induced heart failure via a THBS4-mediated protection in ER stress.", "journal": "Pharmacological research", "date": "2024-07", "authors": "Meng Xiang-Min, Pang Qiu-Yu, Zhou Zhen-Fang, Yuan Jing-Han, You Lu, Feng Qi-Pu, Zhu Bing-Mei", "reference": { "type": "PubMed", "id": "38876442", "url": "https://pubmed.ncbi.nlm.nih.gov/38876442" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9Z1T2-1", "protein_name": "Thrombospondin-4", "gene_name": "Thbs4", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "A0A0G2K1E3-1", "protein_name": "Histone-lysine N-methyltransferase 2B", "gene_name": "Kmt2b", "tax_name": "Rat" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q9Z1T2", "url": "https://www.uniprot.org/uniprotkb/Q9Z1T2" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.38876442", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Thrombospondin-4 deletion does not exacerbate muscular dystrophy in \u03b2-sarcoglycan-deficient and laminin \u03b12 chain-deficient mice.", "journal": "Scientific reports", "date": "2024-06-26", "authors": "Zar\u00e9n Paula, Gawlik Kinga I", "reference": { "type": "PubMed", "id": "38926599", "url": "https://pubmed.ncbi.nlm.nih.gov/38926599" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9Z1T2-1", "protein_name": "Thrombospondin-4", "gene_name": "Thbs4", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q9Z1T2", "url": "https://www.uniprot.org/uniprotkb/Q9Z1T2" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.38926599", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Cloning of a negative transcription factor that binds to the upstream conserved region of Moloney murine leukemia virus.", "journal": "Mol. Cell. Biol.", "date": "1992", "authors": "Flanagan J R, Becker K G, Ennist D L, Gleason S L, Driggers P H, Levi B Z, Appella E, Ozato K", "reference": { "type": "PubMed", "id": "1309593", "url": "https://pubmed.ncbi.nlm.nih.gov/1309593" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q00899-1", "protein_name": "Transcriptional repressor protein YY1", "gene_name": "Yy1", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q00899", "url": "https://www.uniprot.org/uniprotkb/Q00899" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.1309593", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The PcG gene Sfmbt2 is paternally expressed in extraembryonic tissues.", "journal": "Gene Expr. Patterns", "date": "2008", "authors": "Kuzmin Anastasia, Han Zhiming, Golding Michael C, Mann Mellissa R W, Latham Keith E, Varmuza Susannah", "reference": { "type": "PubMed", "id": "18024232", "url": "https://pubmed.ncbi.nlm.nih.gov/18024232" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q00899-1", "protein_name": "Transcriptional repressor protein YY1", "gene_name": "Yy1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9CQ21-1", "protein_name": "Malignant T-cell-amplified sequence 2", "gene_name": "Mcts2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q5DTW2-1", "protein_name": "Scm-like with four MBT domains protein 2", "gene_name": "Sfmbt2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9ER64-1", "protein_name": "Oxysterol-binding protein-related protein 5", "gene_name": "Osbpl5", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q00899", "url": "https://www.uniprot.org/uniprotkb/Q00899" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.18024232", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Delta, a transcription factor that binds to downstream elements in several polymerase II promoters, is a functionally versatile zinc finger protein.", "journal": "Proc. Natl. Acad. Sci. U.S.A.", "date": "1991", "authors": "Hariharan N, Kelley DE, Perry RP", "reference": { "type": "PubMed", "id": "1946404", "url": "https://pubmed.ncbi.nlm.nih.gov/1946404" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q00899-1", "protein_name": "Transcriptional repressor protein YY1", "gene_name": "Yy1", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q00899", "url": "https://www.uniprot.org/uniprotkb/Q00899" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.1946404", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Loss of YY1 impacts the heterochromatic state and meiotic double-strand breaks during mouse spermatogenesis.", "journal": "Molecular and cellular biology", "date": "2009-12", "authors": "Wu Su, Hu Yueh-Chiang, Liu Huifei, Shi Yang", "reference": { "type": "PubMed", "id": "19786570", "url": "https://pubmed.ncbi.nlm.nih.gov/19786570" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q00899-1", "protein_name": "Transcriptional repressor protein YY1", "gene_name": "Yy1", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q00899", "url": "https://www.uniprot.org/uniprotkb/Q00899" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.19786570", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Yy1 regulates Senp1 contributing to AMPA receptor GluR1 expression following neuronal depolarization.", "journal": "Journal of biomedical science", "date": "2019", "authors": "Wu T, Donohoe ME", "reference": { "type": "PubMed", "id": "31629407", "url": "https://pubmed.ncbi.nlm.nih.gov/31629407" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q00899-1", "protein_name": "Transcriptional repressor protein YY1", "gene_name": "Yy1", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q00899", "url": "https://www.uniprot.org/uniprotkb/Q00899" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "phosphorylation": [ { "start_pos": 184, "end_pos": 184, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q00899", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q00899" }, { "database": "PubMed", "id": "31629407", "url": "https://pubmed.ncbi.nlm.nih.gov/31629407" } ], "site_lbl": "Ser184", "uniprot_canonical_ac": "Q00899-1" }, { "start_pos": 247, "end_pos": 247, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q00899", "url": "https://www.uniprot.org/uniprotkb/Q00899" }, { "database": "PubMed", "id": "21183079", "url": "https://pubmed.ncbi.nlm.nih.gov/21183079" }, { "database": "iPTMnet", "id": "Q00899", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q00899" }, { "database": "PubMed", "id": "31629407", "url": "https://pubmed.ncbi.nlm.nih.gov/31629407" } ], "site_lbl": "Ser247", "uniprot_canonical_ac": "Q00899-1" } ], "record_id": "pubmed.31629407", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "YY1-mediated enhancer-promoter communication in the immunoglobulin \u03bc locus is regulated by MSL/MOF recruitment.", "journal": "Cell reports", "date": "2024-07-23", "authors": "Phongbunchoo Yutthaphong, Braikia Fatima-Zohra, Pessoa-Rodrigues Cecilia, Ramamoorthy Senthilkumar, Ramachandran Haribaskar, Grosschedl Anna, Ma Fei, Cauchy Pierre, Akhtar Asifa, Sen Ranjan, Mittler Gerhard, Grosschedl Rudolf", "reference": { "type": "PubMed", "id": "38990722", "url": "https://pubmed.ncbi.nlm.nih.gov/38990722" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q00899-1", "protein_name": "Transcriptional repressor protein YY1", "gene_name": "Yy1", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q00899", "url": "https://www.uniprot.org/uniprotkb/Q00899" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.38990722", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "YY1-controlled regulatory connectivity and transcription are influenced by the cell cycle.", "journal": "Nature genetics", "date": "2024-09", "authors": "Lam Jessica C, Aboreden Nicholas G, Midla Susannah C, Wang Siqing, Huang Anran, Keller Cheryl A, Giardine Belinda, Henderson Kate A, Hardison Ross C, Zhang Haoyue, Blobel Gerd A", "reference": { "type": "PubMed", "id": "39210046", "url": "https://pubmed.ncbi.nlm.nih.gov/39210046" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q00899-1", "protein_name": "Transcriptional repressor protein YY1", "gene_name": "Yy1", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q00899", "url": "https://www.uniprot.org/uniprotkb/Q00899" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.39210046", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "YY1 knockout in pro-B cells impairs lineage commitment, enabling unusual hematopoietic lineage plasticity.", "journal": "Genes & development", "date": "2024-10-16", "authors": "Banerjee Sarmistha, Sanyal Sulagna, Hodawadekar Suchita, Naiyer Sarah, Bano Nasreen, Banerjee Anupam, Rhoades Joshua, Dong Dawei, Allman David, Atchison Michael L", "reference": { "type": "PubMed", "id": "39362773", "url": "https://pubmed.ncbi.nlm.nih.gov/39362773" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q00899-1", "protein_name": "Transcriptional repressor protein YY1", "gene_name": "Yy1", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q00899", "url": "https://www.uniprot.org/uniprotkb/Q00899" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.39362773", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Characterization of the mouse gene that encodes the delta/YY1/NF-E1/UCRBP transcription factor.", "journal": "Proc. Natl. Acad. Sci. U.S.A.", "date": "1993", "authors": "S\u00e1fr\u00e1ny G, Perry R P", "reference": { "type": "PubMed", "id": "8516301", "url": "https://pubmed.ncbi.nlm.nih.gov/8516301" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q00899-1", "protein_name": "Transcriptional repressor protein YY1", "gene_name": "Yy1", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q00899", "url": "https://www.uniprot.org/uniprotkb/Q00899" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.8516301", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Tau-tubulin kinase 1 (TTBK1), a neuron-specific tau kinase candidate, is involved in tau phosphorylation and aggregation.", "journal": "J. Neurochem.", "date": "2006", "authors": "Sato S, Cerny RL, Buescher JL, Ikezu T", "reference": { "type": "PubMed", "id": "16923168", "url": "https://pubmed.ncbi.nlm.nih.gov/16923168" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q6PCN3-1", "protein_name": "Tau-tubulin kinase 1", "gene_name": "Ttbk1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q5TCY1-1", "protein_name": "Tau-tubulin kinase 1", "gene_name": "TTBK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10636-1", "protein_name": "Microtubule-associated protein tau", "gene_name": "MAPT", "tax_name": "Human" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q6PCN3", "url": "https://www.uniprot.org/uniprotkb/Q6PCN3" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "phosphorylation": [ { "start_pos": 514, "end_pos": 514, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine; by TTBK1", "evidence": [ { "database": "UniProtKB", "id": "P10636", "url": "https://www.uniprot.org/uniprotkb/P10636" }, { "database": "iPTMnet", "id": "P10636", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P10636" }, { "database": "PubMed", "id": "16923168", "url": "https://pubmed.ncbi.nlm.nih.gov/16923168" } ], "site_lbl": "Tyr514", "uniprot_canonical_ac": "P10636-1" }, { "start_pos": 515, "end_pos": 515, "kinase_uniprot_canonical_ac": "Q5TCY1-1", "kinase_gene_name": "TTBK1", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P10636", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P10636" }, { "database": "PubMed", "id": "16923168", "url": "https://pubmed.ncbi.nlm.nih.gov/16923168" } ], "site_lbl": "Ser515", "uniprot_canonical_ac": "P10636-1" }, { "start_pos": 515, "end_pos": 515, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PDPK1 and TTBK1", "evidence": [ { "database": "UniProtKB", "id": "P10636", "url": "https://www.uniprot.org/uniprotkb/P10636" }, { "database": "iPTMnet", "id": "P10636", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P10636" }, { "database": "PubMed", "id": "16923168", "url": "https://pubmed.ncbi.nlm.nih.gov/16923168" } ], "site_lbl": "Ser515", "uniprot_canonical_ac": "P10636-1" }, { "start_pos": 516, "end_pos": 516, "kinase_uniprot_canonical_ac": "Q5TCY1-1", "kinase_gene_name": "TTBK1", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P10636", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P10636" }, { "database": "PubMed", "id": "16923168", "url": "https://pubmed.ncbi.nlm.nih.gov/16923168" } ], "site_lbl": "Ser516", "uniprot_canonical_ac": "P10636-1" }, { "start_pos": 516, "end_pos": 516, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PDPK1 and TTBK1", "evidence": [ { "database": "UniProtKB", "id": "P10636", "url": "https://www.uniprot.org/uniprotkb/P10636" }, { "database": "iPTMnet", "id": "P10636", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P10636" }, { "database": "PubMed", "id": "16923168", "url": "https://pubmed.ncbi.nlm.nih.gov/16923168" }, { "database": "PubMed", "id": "19451179", "url": "https://pubmed.ncbi.nlm.nih.gov/19451179" }, { "database": "PubMed", "id": "9614189", "url": "https://pubmed.ncbi.nlm.nih.gov/9614189" }, { "database": "PubMed", "id": "15546861", "url": "https://pubmed.ncbi.nlm.nih.gov/15546861" } ], "site_lbl": "Ser516", "uniprot_canonical_ac": "P10636-1" }, { "start_pos": 519, "end_pos": 519, "kinase_uniprot_canonical_ac": "Q5TCY1-1", "kinase_gene_name": "TTBK1", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P10636", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P10636" }, { "database": "PubMed", "id": "16923168", "url": "https://pubmed.ncbi.nlm.nih.gov/16923168" } ], "site_lbl": "Ser519", "uniprot_canonical_ac": "P10636-1" }, { "start_pos": 519, "end_pos": 519, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by CK1, PDPK1 and TTBK1", "evidence": [ { "database": "UniProtKB", "id": "P10636", "url": "https://www.uniprot.org/uniprotkb/P10636" }, { "database": "iPTMnet", "id": "P10636", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P10636" }, { "database": "PubMed", "id": "15546861", "url": "https://pubmed.ncbi.nlm.nih.gov/15546861" }, { "database": "PubMed", "id": "16923168", "url": "https://pubmed.ncbi.nlm.nih.gov/16923168" }, { "database": "PubMed", "id": "18220336", "url": "https://pubmed.ncbi.nlm.nih.gov/18220336" }, { "database": "PubMed", "id": "19451179", "url": "https://pubmed.ncbi.nlm.nih.gov/19451179" }, { "database": "PubMed", "id": "21327254", "url": "https://pubmed.ncbi.nlm.nih.gov/21327254" }, { "database": "PubMed", "id": "23186163", "url": "https://pubmed.ncbi.nlm.nih.gov/23186163" }, { "database": "PubMed", "id": "24275569", "url": "https://pubmed.ncbi.nlm.nih.gov/24275569" }, { "database": "PubMed", "id": "9614189", "url": "https://pubmed.ncbi.nlm.nih.gov/9614189" }, { "database": "PubMed", "id": "14761950", "url": "https://pubmed.ncbi.nlm.nih.gov/14761950" } ], "site_lbl": "Ser519", "uniprot_canonical_ac": "P10636-1" }, { "start_pos": 733, "end_pos": 733, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by CaMK2 and TTBK1", "evidence": [ { "database": "UniProtKB", "id": "P10636", "url": "https://www.uniprot.org/uniprotkb/P10636" }, { "database": "iPTMnet", "id": "P10636", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P10636" }, { "database": "PubMed", "id": "16923168", "url": "https://pubmed.ncbi.nlm.nih.gov/16923168" } ], "site_lbl": "Ser733", "uniprot_canonical_ac": "P10636-1" }, { "start_pos": 739, "end_pos": 739, "kinase_uniprot_canonical_ac": "Q5TCY1-1", "kinase_gene_name": "TTBK1", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P10636", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P10636" }, { "database": "PubMed", "id": "16923168", "url": "https://pubmed.ncbi.nlm.nih.gov/16923168" } ], "site_lbl": "Ser739", "uniprot_canonical_ac": "P10636-1" }, { "start_pos": 739, "end_pos": 739, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PDPK1 and TTBK1", "evidence": [ { "database": "UniProtKB", "id": "P10636", "url": "https://www.uniprot.org/uniprotkb/P10636" }, { "database": "IEDB", "id": "P10636", "url": "https://www.iedb.org/epitope/P10636" }, { "database": "iPTMnet", "id": "P10636", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P10636" }, { "database": "PubMed", "id": "30001207", "url": "https://pubmed.ncbi.nlm.nih.gov/30001207" }, { "database": "PubMed", "id": "16923168", "url": "https://pubmed.ncbi.nlm.nih.gov/16923168" }, { "database": "PubMed", "id": "19451179", "url": "https://pubmed.ncbi.nlm.nih.gov/19451179" }, { "database": "PubMed", "id": "9614189", "url": "https://pubmed.ncbi.nlm.nih.gov/9614189" }, { "database": "PubMed", "id": "16443603", "url": "https://pubmed.ncbi.nlm.nih.gov/16443603" } ], "site_lbl": "Ser739", "uniprot_canonical_ac": "P10636-1" }, { "start_pos": 744, "end_pos": 744, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine; by TTBK1", "evidence": [ { "database": "UniProtKB", "id": "P10636", "url": "https://www.uniprot.org/uniprotkb/P10636" }, { "database": "iPTMnet", "id": "P10636", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P10636" }, { "database": "PubMed", "id": "16923168", "url": "https://pubmed.ncbi.nlm.nih.gov/16923168" } ], "site_lbl": "Thr744", "uniprot_canonical_ac": "P10636-1" } ], "record_id": "pubmed.16923168", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 11 }, { "field": "total_sites", "count": 7 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Accelerated neurodegeneration and neuroinflammation in transgenic mice expressing P301L tau mutant and tau-tubulin kinase 1.", "journal": "The American journal of pathology", "date": "2014", "authors": "Asai H, Ikezu S, Woodbury ME, Yonemoto GM, Cui L, Ikezu T", "reference": { "type": "PubMed", "id": "24418258", "url": "https://pubmed.ncbi.nlm.nih.gov/24418258" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q6PCN3-1", "protein_name": "Tau-tubulin kinase 1", "gene_name": "Ttbk1", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q6PCN3", "url": "https://www.uniprot.org/uniprotkb/Q6PCN3" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.24418258", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Tau-tubulin kinase 1 and amyloid-beta peptide induce phosphorylation of collapsin response mediator protein-2 and enhance neurite degeneration in Alzheimer disease mouse models.", "journal": "Acta neuropathologica communications", "date": "2020", "authors": "Ikezu S, Ingraham Dixie KL, Koro L, Watanabe T, Kaibuchi K, Ikezu T", "reference": { "type": "PubMed", "id": "32019603", "url": "https://pubmed.ncbi.nlm.nih.gov/32019603" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q6PCN3-1", "protein_name": "Tau-tubulin kinase 1", "gene_name": "Ttbk1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "O08553-1", "protein_name": "Dihydropyrimidinase-related protein 2", "gene_name": "Dpysl2", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q6PCN3", "url": "https://www.uniprot.org/uniprotkb/Q6PCN3" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "phosphorylation": [ { "start_pos": 514, "end_pos": 514, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine; by GSK3-beta", "evidence": [ { "database": "UniProtKB", "id": "O08553", "url": "https://www.uniprot.org/uniprotkb/O08553" }, { "database": "iPTMnet", "id": "O08553", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O08553" }, { "database": "PubMed", "id": "16230462", "url": "https://pubmed.ncbi.nlm.nih.gov/16230462" }, { "database": "PubMed", "id": "23470087", "url": "https://pubmed.ncbi.nlm.nih.gov/23470087" }, { "database": "PubMed", "id": "25073924", "url": "https://pubmed.ncbi.nlm.nih.gov/25073924" }, { "database": "PubMed", "id": "26250894", "url": "https://pubmed.ncbi.nlm.nih.gov/26250894" }, { "database": "PubMed", "id": "28524835", "url": "https://pubmed.ncbi.nlm.nih.gov/28524835" }, { "database": "PubMed", "id": "28638064", "url": "https://pubmed.ncbi.nlm.nih.gov/28638064" }, { "database": "PubMed", "id": "29434807", "url": "https://pubmed.ncbi.nlm.nih.gov/29434807" }, { "database": "PubMed", "id": "29758318", "url": "https://pubmed.ncbi.nlm.nih.gov/29758318" }, { "database": "PubMed", "id": "30046097", "url": "https://pubmed.ncbi.nlm.nih.gov/30046097" }, { "database": "PubMed", "id": "31453382", "url": "https://pubmed.ncbi.nlm.nih.gov/31453382" }, { "database": "PubMed", "id": "31771416", "url": "https://pubmed.ncbi.nlm.nih.gov/31771416" }, { "database": "PubMed", "id": "32019603", "url": "https://pubmed.ncbi.nlm.nih.gov/32019603" }, { "database": "PubMed", "id": "32049584", "url": "https://pubmed.ncbi.nlm.nih.gov/32049584" }, { "database": "PubMed", "id": "32848595", "url": "https://pubmed.ncbi.nlm.nih.gov/32848595" }, { "database": "PubMed", "id": "36293516", "url": "https://pubmed.ncbi.nlm.nih.gov/36293516" }, { "database": "PubMed", "id": "21183079", "url": "https://pubmed.ncbi.nlm.nih.gov/21183079" }, { "database": "PubMed", "id": "22057101", "url": "https://pubmed.ncbi.nlm.nih.gov/22057101" }, { "database": "PubMed", "id": "19131326", "url": "https://pubmed.ncbi.nlm.nih.gov/19131326" } ], "site_lbl": "Thr514", "uniprot_canonical_ac": "O08553-1" }, { "start_pos": 522, "end_pos": 522, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "O08553", "url": "https://www.uniprot.org/uniprotkb/O08553" }, { "database": "PubMed", "id": "19131326", "url": "https://pubmed.ncbi.nlm.nih.gov/19131326" }, { "database": "PubMed", "id": "21183079", "url": "https://pubmed.ncbi.nlm.nih.gov/21183079" }, { "database": "IntAct", "id": "O08553", "url": "https://www.ebi.ac.uk/intact/interactors/id:O08553*" }, { "database": "iPTMnet", "id": "O08553", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O08553" }, { "database": "PubMed", "id": "23022559", "url": "https://pubmed.ncbi.nlm.nih.gov/23022559" }, { "database": "PubMed", "id": "16230462", "url": "https://pubmed.ncbi.nlm.nih.gov/16230462" }, { "database": "PubMed", "id": "17683481", "url": "https://pubmed.ncbi.nlm.nih.gov/17683481" }, { "database": "PubMed", "id": "21943307", "url": "https://pubmed.ncbi.nlm.nih.gov/21943307" }, { "database": "PubMed", "id": "22279220", "url": "https://pubmed.ncbi.nlm.nih.gov/22279220" }, { "database": "PubMed", "id": "29758318", "url": "https://pubmed.ncbi.nlm.nih.gov/29758318" }, { "database": "PubMed", "id": "30194029", "url": "https://pubmed.ncbi.nlm.nih.gov/30194029" }, { "database": "PubMed", "id": "30375127", "url": "https://pubmed.ncbi.nlm.nih.gov/30375127" }, { "database": "PubMed", "id": "31771416", "url": "https://pubmed.ncbi.nlm.nih.gov/31771416" }, { "database": "PubMed", "id": "32019603", "url": "https://pubmed.ncbi.nlm.nih.gov/32019603" }, { "database": "PubMed", "id": "32848595", "url": "https://pubmed.ncbi.nlm.nih.gov/32848595" }, { "database": "PubMed", "id": "33318403", "url": "https://pubmed.ncbi.nlm.nih.gov/33318403" } ], "site_lbl": "Ser522", "uniprot_canonical_ac": "O08553-1" }, { "start_pos": 555, "end_pos": 555, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine; by ROCK2", "evidence": [ { "database": "UniProtKB", "id": "O08553", "url": "https://www.uniprot.org/uniprotkb/O08553" }, { "database": "iPTMnet", "id": "O08553", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O08553" }, { "database": "PubMed", "id": "22544872", "url": "https://pubmed.ncbi.nlm.nih.gov/22544872" }, { "database": "PubMed", "id": "24227739", "url": "https://pubmed.ncbi.nlm.nih.gov/24227739" }, { "database": "PubMed", "id": "32019603", "url": "https://pubmed.ncbi.nlm.nih.gov/32019603" }, { "database": "PubMed", "id": "32848595", "url": "https://pubmed.ncbi.nlm.nih.gov/32848595" }, { "database": "PubMed", "id": "32860158", "url": "https://pubmed.ncbi.nlm.nih.gov/32860158" } ], "site_lbl": "Thr555", "uniprot_canonical_ac": "O08553-1" } ], "record_id": "pubmed.32019603", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 3 }, { "field": "total_sites", "count": 3 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Acute inhibition of the CNS-specific kinase TTBK1 significantly lowers tau phosphorylation at several disease relevant sites.", "journal": "PloS one", "date": "2020", "authors": "Dillon GM, Henderson JL, Bao C, Joyce JA, Calhoun M, Amaral B, King KW, Bajrami B, Rabah D", "reference": { "type": "PubMed", "id": "32255788", "url": "https://pubmed.ncbi.nlm.nih.gov/32255788" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q6PCN3-1", "protein_name": "Tau-tubulin kinase 1", "gene_name": "Ttbk1", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q6PCN3", "url": "https://www.uniprot.org/uniprotkb/Q6PCN3" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.32255788", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Mechanisms of Regulation and Diverse Activities of Tau-Tubulin Kinase (TTBK) Isoforms.", "journal": "Cellular and molecular neurobiology", "date": "2021", "authors": "Bao C, Bajrami B, Marcotte DJ, Chodaparambil JV, Kerns HM, Henderson J, Wei R, Gao B, Dillon GM", "reference": { "type": "PubMed", "id": "32424773", "url": "https://pubmed.ncbi.nlm.nih.gov/32424773" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q6PCN3-1", "protein_name": "Tau-tubulin kinase 1", "gene_name": "Ttbk1", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q6PCN3", "url": "https://www.uniprot.org/uniprotkb/Q6PCN3" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.32424773", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Long non-coding RNA 00507/miRNA-181c-5p/TTBK1/MAPT axis regulates tau hyperphosphorylation in Alzheimer's disease.", "journal": "The journal of gene medicine", "date": "2020", "authors": "Yan Y, Yan H, Teng Y, Wang Q, Yang P, Zhang L, Cheng H, Fu S", "reference": { "type": "PubMed", "id": "32891070", "url": "https://pubmed.ncbi.nlm.nih.gov/32891070" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q6PCN3-1", "protein_name": "Tau-tubulin kinase 1", "gene_name": "Ttbk1", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q6PCN3", "url": "https://www.uniprot.org/uniprotkb/Q6PCN3" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.32891070", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "ADP-ribosylation factor-like GTPase 15 enhances insulin-induced AKT phosphorylation in the IR/IRS1/AKT pathway by interacting with ASAP2 and regulating PDPK1 activity.", "journal": "Biochemical and biophysical research communications", "date": "2017", "authors": "Zhao J, Wang M, Deng W, Zhong D, Jiang Y, Liao Y, Chen B, Zhang X", "reference": { "type": "PubMed", "id": "28322786", "url": "https://pubmed.ncbi.nlm.nih.gov/28322786" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8BGR6-1", "protein_name": "ADP-ribosylation factor-like protein 15", "gene_name": "Arl15", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P31750-1", "protein_name": "RAC-alpha serine/threonine-protein kinase", "gene_name": "Akt1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q7SIG6-1", "protein_name": "Arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 2", "gene_name": "Asap2", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q8BGR6", "url": "https://www.uniprot.org/uniprotkb/Q8BGR6" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "phosphorylation": [ { "start_pos": 308, "end_pos": 308, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine; by IKKE, PDPK1 and TBK1", "evidence": [ { "database": "UniProtKB", "id": "P31750", "url": "https://www.uniprot.org/uniprotkb/P31750" }, { "database": "PRO", "id": "P31750", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=P31750" }, { "database": "iPTMnet", "id": "P31750", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P31750" }, { "database": "PubMed", "id": "31915252", "url": "https://pubmed.ncbi.nlm.nih.gov/31915252" }, { "database": "PubMed", "id": "10438924", "url": "https://pubmed.ncbi.nlm.nih.gov/10438924" }, { "database": "PubMed", "id": "11006271", "url": "https://pubmed.ncbi.nlm.nih.gov/11006271" }, { "database": "PubMed", "id": "11375936", "url": "https://pubmed.ncbi.nlm.nih.gov/11375936" }, { "database": "PubMed", "id": "11507090", "url": "https://pubmed.ncbi.nlm.nih.gov/11507090" }, { "database": "PubMed", "id": "11563975", "url": "https://pubmed.ncbi.nlm.nih.gov/11563975" }, { "database": "PubMed", "id": "11803463", "url": "https://pubmed.ncbi.nlm.nih.gov/11803463" }, { "database": "PubMed", "id": "12153489", "url": "https://pubmed.ncbi.nlm.nih.gov/12153489" }, { "database": "PubMed", "id": "12493740", "url": "https://pubmed.ncbi.nlm.nih.gov/12493740" }, { "database": "PubMed", "id": "12637511", "url": "https://pubmed.ncbi.nlm.nih.gov/12637511" }, { "database": "PubMed", "id": "12911789", "url": "https://pubmed.ncbi.nlm.nih.gov/12911789" }, { "database": "PubMed", "id": "12947100", "url": "https://pubmed.ncbi.nlm.nih.gov/12947100" }, { "database": "PubMed", "id": "14623889", "url": "https://pubmed.ncbi.nlm.nih.gov/14623889" }, { "database": "PubMed", "id": "15020199", "url": "https://pubmed.ncbi.nlm.nih.gov/15020199" }, { "database": "PubMed", "id": "15065872", "url": "https://pubmed.ncbi.nlm.nih.gov/15065872" }, { "database": "PubMed", "id": "15067018", "url": "https://pubmed.ncbi.nlm.nih.gov/15067018" }, { "database": "PubMed", "id": "15122342", "url": "https://pubmed.ncbi.nlm.nih.gov/15122342" }, { "database": "PubMed", "id": "15278907", "url": "https://pubmed.ncbi.nlm.nih.gov/15278907" }, { "database": "PubMed", "id": "15389876", "url": "https://pubmed.ncbi.nlm.nih.gov/15389876" }, { "database": "PubMed", "id": "15504738", "url": "https://pubmed.ncbi.nlm.nih.gov/15504738" }, { "database": "PubMed", "id": "15574782", "url": "https://pubmed.ncbi.nlm.nih.gov/15574782" }, { "database": "PubMed", "id": "15591229", "url": "https://pubmed.ncbi.nlm.nih.gov/15591229" }, { "database": "PubMed", "id": "15842198", "url": "https://pubmed.ncbi.nlm.nih.gov/15842198" }, { "database": "PubMed", "id": "16338957", "url": "https://pubmed.ncbi.nlm.nih.gov/16338957" }, { "database": "PubMed", "id": "16512910", "url": "https://pubmed.ncbi.nlm.nih.gov/16512910" }, { "database": "PubMed", "id": "16787946", "url": "https://pubmed.ncbi.nlm.nih.gov/16787946" }, { "database": "PubMed", "id": "16809629", "url": "https://pubmed.ncbi.nlm.nih.gov/16809629" }, { "database": "PubMed", "id": "16872509", "url": "https://pubmed.ncbi.nlm.nih.gov/16872509" }, { "database": "PubMed", "id": "17190838", "url": "https://pubmed.ncbi.nlm.nih.gov/17190838" }, { "database": "PubMed", "id": "17220321", "url": "https://pubmed.ncbi.nlm.nih.gov/17220321" }, { "database": "PubMed", "id": "17287469", "url": "https://pubmed.ncbi.nlm.nih.gov/17287469" }, { "database": "PubMed", "id": "17339838", "url": "https://pubmed.ncbi.nlm.nih.gov/17339838" }, { "database": "PubMed", "id": "17371830", "url": "https://pubmed.ncbi.nlm.nih.gov/17371830" }, { "database": "PubMed", "id": "17924178", "url": "https://pubmed.ncbi.nlm.nih.gov/17924178" }, { "database": "PubMed", "id": "17967879", "url": "https://pubmed.ncbi.nlm.nih.gov/17967879" }, { "database": "PubMed", "id": "17977562", "url": "https://pubmed.ncbi.nlm.nih.gov/17977562" }, { "database": "PubMed", "id": "18171481", "url": "https://pubmed.ncbi.nlm.nih.gov/18171481" }, { "database": "PubMed", "id": "18177853", "url": "https://pubmed.ncbi.nlm.nih.gov/18177853" }, { "database": "PubMed", "id": "18332223", "url": "https://pubmed.ncbi.nlm.nih.gov/18332223" }, { "database": "PubMed", "id": "18757368", "url": "https://pubmed.ncbi.nlm.nih.gov/18757368" }, { "database": "PubMed", "id": "18952837", "url": "https://pubmed.ncbi.nlm.nih.gov/18952837" }, { "database": "PubMed", "id": "19047061", "url": "https://pubmed.ncbi.nlm.nih.gov/19047061" }, { "database": "PubMed", "id": "19065678", "url": "https://pubmed.ncbi.nlm.nih.gov/19065678" }, { "database": "PubMed", "id": "19077278", "url": "https://pubmed.ncbi.nlm.nih.gov/19077278" }, { "database": "PubMed", "id": "19369943", "url": "https://pubmed.ncbi.nlm.nih.gov/19369943" }, { "database": "PubMed", "id": "19432987", "url": "https://pubmed.ncbi.nlm.nih.gov/19432987" }, { "database": "PubMed", "id": "19587782", "url": "https://pubmed.ncbi.nlm.nih.gov/19587782" }, { "database": "PubMed", "id": "19627269", "url": "https://pubmed.ncbi.nlm.nih.gov/19627269" }, { "database": "PubMed", "id": "19657063", "url": "https://pubmed.ncbi.nlm.nih.gov/19657063" }, { "database": "PubMed", "id": "19731018", "url": "https://pubmed.ncbi.nlm.nih.gov/19731018" }, { "database": "PubMed", "id": "19761823", "url": "https://pubmed.ncbi.nlm.nih.gov/19761823" }, { "database": "PubMed", "id": "19761830", "url": "https://pubmed.ncbi.nlm.nih.gov/19761830" }, { "database": "PubMed", "id": "19844585", "url": "https://pubmed.ncbi.nlm.nih.gov/19844585" }, { "database": "PubMed", "id": "20028942", "url": "https://pubmed.ncbi.nlm.nih.gov/20028942" }, { "database": "PubMed", "id": "20103705", "url": "https://pubmed.ncbi.nlm.nih.gov/20103705" }, { "database": "PubMed", "id": "20179753", "url": "https://pubmed.ncbi.nlm.nih.gov/20179753" }, { "database": "PubMed", "id": "20188786", "url": "https://pubmed.ncbi.nlm.nih.gov/20188786" }, { "database": "PubMed", "id": "20333297", "url": "https://pubmed.ncbi.nlm.nih.gov/20333297" }, { "database": "PubMed", "id": "20363892", "url": "https://pubmed.ncbi.nlm.nih.gov/20363892" }, { "database": "PubMed", "id": "20386333", "url": "https://pubmed.ncbi.nlm.nih.gov/20386333" }, { "database": "PubMed", "id": "20586915", "url": "https://pubmed.ncbi.nlm.nih.gov/20586915" }, { "database": "PubMed", "id": "20587420", "url": "https://pubmed.ncbi.nlm.nih.gov/20587420" }, { "database": "PubMed", "id": "20622167", "url": "https://pubmed.ncbi.nlm.nih.gov/20622167" }, { "database": "PubMed", "id": "20661274", "url": "https://pubmed.ncbi.nlm.nih.gov/20661274" }, { "database": "PubMed", "id": "20719961", "url": "https://pubmed.ncbi.nlm.nih.gov/20719961" }, { "database": "PubMed", "id": "20847051", "url": "https://pubmed.ncbi.nlm.nih.gov/20847051" }, { "database": "PubMed", "id": "20971978", "url": "https://pubmed.ncbi.nlm.nih.gov/20971978" }, { "database": "PubMed", "id": "20976192", "url": "https://pubmed.ncbi.nlm.nih.gov/20976192" }, { "database": "PubMed", "id": "21266327", "url": "https://pubmed.ncbi.nlm.nih.gov/21266327" }, { "database": "PubMed", "id": "21571071", "url": "https://pubmed.ncbi.nlm.nih.gov/21571071" }, { "database": "PubMed", "id": "21642988", "url": "https://pubmed.ncbi.nlm.nih.gov/21642988" }, { "database": "PubMed", "id": "21655268", "url": "https://pubmed.ncbi.nlm.nih.gov/21655268" }, { "database": "PubMed", "id": "21670491", "url": "https://pubmed.ncbi.nlm.nih.gov/21670491" }, { "database": "PubMed", "id": "21859896", "url": "https://pubmed.ncbi.nlm.nih.gov/21859896" }, { "database": "PubMed", "id": "21906027", "url": "https://pubmed.ncbi.nlm.nih.gov/21906027" }, { "database": "PubMed", "id": "21926268", "url": "https://pubmed.ncbi.nlm.nih.gov/21926268" }, { "database": "PubMed", "id": "21927580", "url": "https://pubmed.ncbi.nlm.nih.gov/21927580" }, { "database": "PubMed", "id": "22019461", "url": "https://pubmed.ncbi.nlm.nih.gov/22019461" }, { "database": "PubMed", "id": "22028912", "url": "https://pubmed.ncbi.nlm.nih.gov/22028912" }, { "database": "PubMed", "id": "22117619", "url": "https://pubmed.ncbi.nlm.nih.gov/22117619" }, { "database": "PubMed", "id": "22132131", "url": "https://pubmed.ncbi.nlm.nih.gov/22132131" }, { "database": "PubMed", "id": "22184110", "url": "https://pubmed.ncbi.nlm.nih.gov/22184110" }, { "database": "PubMed", "id": "22218715", "url": "https://pubmed.ncbi.nlm.nih.gov/22218715" }, { "database": "PubMed", "id": "22253608", "url": "https://pubmed.ncbi.nlm.nih.gov/22253608" }, { "database": "PubMed", "id": "22359505", "url": "https://pubmed.ncbi.nlm.nih.gov/22359505" }, { "database": "PubMed", "id": "22403300", "url": "https://pubmed.ncbi.nlm.nih.gov/22403300" }, { "database": "PubMed", "id": "22412835", "url": "https://pubmed.ncbi.nlm.nih.gov/22412835" }, { "database": "PubMed", "id": "22412912", "url": "https://pubmed.ncbi.nlm.nih.gov/22412912" }, { "database": "PubMed", "id": "22418434", "url": "https://pubmed.ncbi.nlm.nih.gov/22418434" }, { "database": "PubMed", "id": "22428049", "url": "https://pubmed.ncbi.nlm.nih.gov/22428049" }, { "database": "PubMed", "id": "22476915", "url": "https://pubmed.ncbi.nlm.nih.gov/22476915" }, { "database": "PubMed", "id": "22496778", "url": "https://pubmed.ncbi.nlm.nih.gov/22496778" }, { "database": "PubMed", "id": "22586587", "url": "https://pubmed.ncbi.nlm.nih.gov/22586587" }, { "database": "PubMed", "id": "22606274", "url": "https://pubmed.ncbi.nlm.nih.gov/22606274" }, { "database": "PubMed", "id": "22652602", "url": "https://pubmed.ncbi.nlm.nih.gov/22652602" }, { "database": "PubMed", "id": "22685300", "url": "https://pubmed.ncbi.nlm.nih.gov/22685300" }, { "database": "PubMed", "id": "22693641", "url": "https://pubmed.ncbi.nlm.nih.gov/22693641" }, { "database": "PubMed", "id": "22710723", "url": "https://pubmed.ncbi.nlm.nih.gov/22710723" }, { "database": "PubMed", "id": "22733590", "url": "https://pubmed.ncbi.nlm.nih.gov/22733590" }, { "database": "PubMed", "id": "22773877", "url": "https://pubmed.ncbi.nlm.nih.gov/22773877" }, { "database": "PubMed", "id": "22792172", "url": "https://pubmed.ncbi.nlm.nih.gov/22792172" }, { "database": "PubMed", "id": "22832498", "url": "https://pubmed.ncbi.nlm.nih.gov/22832498" }, { "database": "PubMed", "id": "22933110", "url": "https://pubmed.ncbi.nlm.nih.gov/22933110" }, { "database": "PubMed", "id": "22941977", "url": "https://pubmed.ncbi.nlm.nih.gov/22941977" }, { "database": "PubMed", "id": "23029230", "url": "https://pubmed.ncbi.nlm.nih.gov/23029230" }, { "database": "PubMed", "id": "23049865", "url": "https://pubmed.ncbi.nlm.nih.gov/23049865" }, { "database": "PubMed", "id": "23071621", "url": "https://pubmed.ncbi.nlm.nih.gov/23071621" }, { "database": "PubMed", "id": "23239877", "url": "https://pubmed.ncbi.nlm.nih.gov/23239877" }, { "database": "PubMed", "id": "23251389", "url": "https://pubmed.ncbi.nlm.nih.gov/23251389" }, { "database": "PubMed", "id": "23251519", "url": "https://pubmed.ncbi.nlm.nih.gov/23251519" }, { "database": "PubMed", "id": "23275438", "url": "https://pubmed.ncbi.nlm.nih.gov/23275438" }, { "database": "PubMed", "id": "23311350", "url": "https://pubmed.ncbi.nlm.nih.gov/23311350" }, { "database": "PubMed", "id": "23386984", "url": "https://pubmed.ncbi.nlm.nih.gov/23386984" }, { "database": "PubMed", "id": "23390495", "url": "https://pubmed.ncbi.nlm.nih.gov/23390495" }, { "database": "PubMed", "id": "23444402", "url": "https://pubmed.ncbi.nlm.nih.gov/23444402" }, { "database": "PubMed", "id": "23451056", "url": "https://pubmed.ncbi.nlm.nih.gov/23451056" }, { "database": "PubMed", "id": "23469174", "url": "https://pubmed.ncbi.nlm.nih.gov/23469174" }, { "database": "PubMed", "id": "23493568", "url": "https://pubmed.ncbi.nlm.nih.gov/23493568" }, { "database": "PubMed", "id": "23554947", "url": "https://pubmed.ncbi.nlm.nih.gov/23554947" }, { "database": "PubMed", "id": "23593332", "url": "https://pubmed.ncbi.nlm.nih.gov/23593332" }, { "database": "PubMed", "id": "23622715", "url": "https://pubmed.ncbi.nlm.nih.gov/23622715" }, { "database": "PubMed", "id": "23671593", "url": "https://pubmed.ncbi.nlm.nih.gov/23671593" }, { "database": "PubMed", "id": "23716717", "url": "https://pubmed.ncbi.nlm.nih.gov/23716717" }, { "database": "PubMed", "id": "23750258", "url": "https://pubmed.ncbi.nlm.nih.gov/23750258" }, { "database": "PubMed", "id": "23874604", "url": "https://pubmed.ncbi.nlm.nih.gov/23874604" }, { "database": "PubMed", "id": "23907468", "url": "https://pubmed.ncbi.nlm.nih.gov/23907468" }, { "database": "PubMed", "id": "23935891", "url": "https://pubmed.ncbi.nlm.nih.gov/23935891" }, { "database": "PubMed", "id": "23940776", "url": "https://pubmed.ncbi.nlm.nih.gov/23940776" }, { "database": "PubMed", "id": "23964069", "url": "https://pubmed.ncbi.nlm.nih.gov/23964069" }, { "database": "PubMed", "id": "24068327", "url": "https://pubmed.ncbi.nlm.nih.gov/24068327" }, { "database": "PubMed", "id": "24068707", "url": "https://pubmed.ncbi.nlm.nih.gov/24068707" }, { "database": "PubMed", "id": "24101676", "url": "https://pubmed.ncbi.nlm.nih.gov/24101676" }, { "database": "PubMed", "id": "24116102", "url": "https://pubmed.ncbi.nlm.nih.gov/24116102" }, { "database": "PubMed", "id": "24126057", "url": "https://pubmed.ncbi.nlm.nih.gov/24126057" }, { "database": "PubMed", "id": "24150605", "url": "https://pubmed.ncbi.nlm.nih.gov/24150605" }, { "database": "PubMed", "id": "24156551", "url": "https://pubmed.ncbi.nlm.nih.gov/24156551" }, { "database": "PubMed", "id": "24280377", "url": "https://pubmed.ncbi.nlm.nih.gov/24280377" }, { "database": "PubMed", "id": "24280772", "url": "https://pubmed.ncbi.nlm.nih.gov/24280772" }, { "database": "PubMed", "id": "24286194", "url": "https://pubmed.ncbi.nlm.nih.gov/24286194" }, { "database": "PubMed", "id": "24340073", "url": "https://pubmed.ncbi.nlm.nih.gov/24340073" }, { "database": "PubMed", "id": "24349514", "url": "https://pubmed.ncbi.nlm.nih.gov/24349514" }, { "database": "PubMed", "id": "24351823", "url": "https://pubmed.ncbi.nlm.nih.gov/24351823" }, { "database": "PubMed", "id": "24434432", "url": "https://pubmed.ncbi.nlm.nih.gov/24434432" }, { "database": "PubMed", "id": "24435134", "url": "https://pubmed.ncbi.nlm.nih.gov/24435134" }, { "database": "PubMed", "id": "24505362", "url": "https://pubmed.ncbi.nlm.nih.gov/24505362" }, { "database": "PubMed", "id": "24621388", "url": "https://pubmed.ncbi.nlm.nih.gov/24621388" }, { "database": "PubMed", "id": "24647338", "url": "https://pubmed.ncbi.nlm.nih.gov/24647338" }, { "database": "PubMed", "id": "24649407", "url": "https://pubmed.ncbi.nlm.nih.gov/24649407" }, { "database": "PubMed", "id": "24662050", "url": "https://pubmed.ncbi.nlm.nih.gov/24662050" }, { "database": "PubMed", "id": "24670364", "url": "https://pubmed.ncbi.nlm.nih.gov/24670364" }, { "database": "PubMed", "id": "24670654", "url": "https://pubmed.ncbi.nlm.nih.gov/24670654" }, { "database": "PubMed", "id": "24722238", "url": "https://pubmed.ncbi.nlm.nih.gov/24722238" }, { "database": "PubMed", "id": "24734904", "url": "https://pubmed.ncbi.nlm.nih.gov/24734904" }, { "database": "PubMed", "id": "24740015", "url": "https://pubmed.ncbi.nlm.nih.gov/24740015" }, { "database": "PubMed", "id": "24775271", "url": "https://pubmed.ncbi.nlm.nih.gov/24775271" }, { "database": "PubMed", "id": "24810050", "url": "https://pubmed.ncbi.nlm.nih.gov/24810050" }, { "database": "PubMed", "id": "24944899", "url": "https://pubmed.ncbi.nlm.nih.gov/24944899" }, { "database": "PubMed", "id": "24945938", "url": "https://pubmed.ncbi.nlm.nih.gov/24945938" }, { "database": "PubMed", "id": "24967341", "url": "https://pubmed.ncbi.nlm.nih.gov/24967341" }, { "database": "PubMed", "id": "24987368", "url": "https://pubmed.ncbi.nlm.nih.gov/24987368" }, { "database": "PubMed", "id": "25056877", "url": "https://pubmed.ncbi.nlm.nih.gov/25056877" }, { "database": "PubMed", "id": "25084011", "url": "https://pubmed.ncbi.nlm.nih.gov/25084011" }, { "database": "PubMed", "id": "25132272", "url": "https://pubmed.ncbi.nlm.nih.gov/25132272" }, { "database": "PubMed", "id": "25162417", "url": "https://pubmed.ncbi.nlm.nih.gov/25162417" }, { "database": "PubMed", "id": "25214523", "url": "https://pubmed.ncbi.nlm.nih.gov/25214523" }, { "database": "PubMed", "id": "25221930", "url": "https://pubmed.ncbi.nlm.nih.gov/25221930" }, { "database": "PubMed", "id": "25332884", "url": "https://pubmed.ncbi.nlm.nih.gov/25332884" }, { "database": "PubMed", "id": "25336920", "url": "https://pubmed.ncbi.nlm.nih.gov/25336920" }, { "database": "PubMed", "id": "25377878", "url": "https://pubmed.ncbi.nlm.nih.gov/25377878" }, { "database": "PubMed", "id": "25379771", "url": "https://pubmed.ncbi.nlm.nih.gov/25379771" }, { "database": "PubMed", "id": "25394413", "url": "https://pubmed.ncbi.nlm.nih.gov/25394413" }, { "database": "PubMed", "id": "25398386", "url": "https://pubmed.ncbi.nlm.nih.gov/25398386" }, { "database": "PubMed", "id": "25415296", "url": "https://pubmed.ncbi.nlm.nih.gov/25415296" }, { "database": "PubMed", "id": "25463972", "url": "https://pubmed.ncbi.nlm.nih.gov/25463972" }, { "database": "PubMed", "id": "25531328", "url": "https://pubmed.ncbi.nlm.nih.gov/25531328" }, { "database": "PubMed", "id": "25546475", "url": "https://pubmed.ncbi.nlm.nih.gov/25546475" }, { "database": "PubMed", "id": "25558238", "url": "https://pubmed.ncbi.nlm.nih.gov/25558238" }, { "database": "PubMed", "id": "25568666", "url": "https://pubmed.ncbi.nlm.nih.gov/25568666" }, { "database": "PubMed", "id": "25594415", "url": "https://pubmed.ncbi.nlm.nih.gov/25594415" }, { "database": "PubMed", "id": "25606824", "url": "https://pubmed.ncbi.nlm.nih.gov/25606824" }, { "database": "PubMed", "id": "25646773", "url": "https://pubmed.ncbi.nlm.nih.gov/25646773" }, { "database": "PubMed", "id": "25752217", "url": "https://pubmed.ncbi.nlm.nih.gov/25752217" }, { "database": "PubMed", "id": "25780086", "url": "https://pubmed.ncbi.nlm.nih.gov/25780086" }, { "database": "PubMed", "id": "25790465", "url": "https://pubmed.ncbi.nlm.nih.gov/25790465" }, { "database": "PubMed", "id": "25799367", "url": "https://pubmed.ncbi.nlm.nih.gov/25799367" }, { "database": "PubMed", "id": "25808491", "url": "https://pubmed.ncbi.nlm.nih.gov/25808491" }, { "database": "PubMed", "id": "25826077", "url": "https://pubmed.ncbi.nlm.nih.gov/25826077" }, { "database": "PubMed", "id": "25826083", "url": "https://pubmed.ncbi.nlm.nih.gov/25826083" }, { "database": "PubMed", "id": "25853295", "url": "https://pubmed.ncbi.nlm.nih.gov/25853295" }, { "database": "PubMed", "id": "25880554", "url": "https://pubmed.ncbi.nlm.nih.gov/25880554" }, { "database": "PubMed", "id": "25888638", "url": "https://pubmed.ncbi.nlm.nih.gov/25888638" }, { "database": "PubMed", "id": "26121028", "url": "https://pubmed.ncbi.nlm.nih.gov/26121028" }, { "database": "PubMed", "id": "26249804", "url": "https://pubmed.ncbi.nlm.nih.gov/26249804" }, { "database": "PubMed", "id": "26263164", "url": "https://pubmed.ncbi.nlm.nih.gov/26263164" }, { "database": "PubMed", "id": "26278110", "url": "https://pubmed.ncbi.nlm.nih.gov/26278110" }, { "database": "PubMed", "id": "26412745", "url": "https://pubmed.ncbi.nlm.nih.gov/26412745" }, { "database": "PubMed", "id": "26438830", "url": "https://pubmed.ncbi.nlm.nih.gov/26438830" }, { "database": "PubMed", "id": "26491103", "url": "https://pubmed.ncbi.nlm.nih.gov/26491103" }, { "database": "PubMed", "id": "26503303", "url": "https://pubmed.ncbi.nlm.nih.gov/26503303" }, { "database": "PubMed", "id": "26503641", "url": "https://pubmed.ncbi.nlm.nih.gov/26503641" }, { "database": "PubMed", "id": "26553931", "url": "https://pubmed.ncbi.nlm.nih.gov/26553931" }, { "database": "PubMed", "id": "26554359", "url": "https://pubmed.ncbi.nlm.nih.gov/26554359" }, { "database": "PubMed", "id": "26687764", "url": "https://pubmed.ncbi.nlm.nih.gov/26687764" }, { "database": "PubMed", "id": "26720454", "url": "https://pubmed.ncbi.nlm.nih.gov/26720454" }, { "database": "PubMed", "id": "26743335", "url": "https://pubmed.ncbi.nlm.nih.gov/26743335" }, { "database": "PubMed", "id": "26809587", "url": "https://pubmed.ncbi.nlm.nih.gov/26809587" }, { "database": "PubMed", "id": "26813160", "url": "https://pubmed.ncbi.nlm.nih.gov/26813160" }, { "database": "PubMed", "id": "26872208", "url": "https://pubmed.ncbi.nlm.nih.gov/26872208" }, { "database": "PubMed", "id": "26876212", "url": "https://pubmed.ncbi.nlm.nih.gov/26876212" }, { "database": "PubMed", "id": "26880110", "url": "https://pubmed.ncbi.nlm.nih.gov/26880110" }, { "database": "PubMed", "id": "26909311", "url": "https://pubmed.ncbi.nlm.nih.gov/26909311" }, { "database": "PubMed", "id": "26928911", "url": "https://pubmed.ncbi.nlm.nih.gov/26928911" }, { "database": "PubMed", "id": "26959121", "url": "https://pubmed.ncbi.nlm.nih.gov/26959121" }, { "database": "PubMed", "id": "27000529", "url": "https://pubmed.ncbi.nlm.nih.gov/27000529" }, { "database": "PubMed", "id": "27001940", "url": "https://pubmed.ncbi.nlm.nih.gov/27001940" }, { "database": "PubMed", "id": "27009084", "url": "https://pubmed.ncbi.nlm.nih.gov/27009084" }, { "database": "PubMed", "id": "27070899", "url": "https://pubmed.ncbi.nlm.nih.gov/27070899" }, { "database": "PubMed", "id": "27099352", "url": "https://pubmed.ncbi.nlm.nih.gov/27099352" }, { "database": "PubMed", "id": "27127181", "url": "https://pubmed.ncbi.nlm.nih.gov/27127181" }, { "database": "PubMed", "id": "27167344", "url": "https://pubmed.ncbi.nlm.nih.gov/27167344" }, { "database": "PubMed", "id": "27176481", "url": "https://pubmed.ncbi.nlm.nih.gov/27176481" }, { "database": "PubMed", "id": "27197158", "url": "https://pubmed.ncbi.nlm.nih.gov/27197158" }, { "database": "PubMed", "id": "27226588", "url": "https://pubmed.ncbi.nlm.nih.gov/27226588" }, { "database": "PubMed", "id": "27248324", "url": "https://pubmed.ncbi.nlm.nih.gov/27248324" }, { "database": "PubMed", "id": "27253992", "url": "https://pubmed.ncbi.nlm.nih.gov/27253992" }, { "database": "PubMed", "id": "27257474", "url": "https://pubmed.ncbi.nlm.nih.gov/27257474" }, { "database": "PubMed", "id": "27344443", "url": "https://pubmed.ncbi.nlm.nih.gov/27344443" }, { "database": "PubMed", "id": "27384491", "url": "https://pubmed.ncbi.nlm.nih.gov/27384491" }, { "database": "PubMed", "id": "27412013", "url": "https://pubmed.ncbi.nlm.nih.gov/27412013" }, { "database": "PubMed", "id": "27477105", "url": "https://pubmed.ncbi.nlm.nih.gov/27477105" }, { "database": "PubMed", "id": "27485212", "url": "https://pubmed.ncbi.nlm.nih.gov/27485212" }, { "database": "PubMed", "id": "27534430", "url": "https://pubmed.ncbi.nlm.nih.gov/27534430" }, { "database": "PubMed", "id": "27542970", "url": "https://pubmed.ncbi.nlm.nih.gov/27542970" }, { "database": "PubMed", "id": "27689988", "url": "https://pubmed.ncbi.nlm.nih.gov/27689988" }, { "database": "PubMed", "id": "27734117", "url": "https://pubmed.ncbi.nlm.nih.gov/27734117" }, { "database": "PubMed", "id": "27765055", "url": "https://pubmed.ncbi.nlm.nih.gov/27765055" }, { "database": "PubMed", "id": "27876711", "url": "https://pubmed.ncbi.nlm.nih.gov/27876711" }, { "database": "PubMed", "id": "27893783", "url": "https://pubmed.ncbi.nlm.nih.gov/27893783" }, { "database": "PubMed", "id": "28018219", "url": "https://pubmed.ncbi.nlm.nih.gov/28018219" }, { "database": "PubMed", "id": "28086800", "url": "https://pubmed.ncbi.nlm.nih.gov/28086800" }, { "database": "PubMed", "id": "28123341", "url": "https://pubmed.ncbi.nlm.nih.gov/28123341" }, { "database": "PubMed", "id": "28123943", "url": "https://pubmed.ncbi.nlm.nih.gov/28123943" }, { "database": "PubMed", "id": "28152035", "url": "https://pubmed.ncbi.nlm.nih.gov/28152035" }, { "database": "PubMed", "id": "28209968", "url": "https://pubmed.ncbi.nlm.nih.gov/28209968" }, { "database": "PubMed", "id": "28225038", "url": "https://pubmed.ncbi.nlm.nih.gov/28225038" }, { "database": "PubMed", "id": "28243164", "url": "https://pubmed.ncbi.nlm.nih.gov/28243164" }, { "database": "PubMed", "id": "28264587", "url": "https://pubmed.ncbi.nlm.nih.gov/28264587" }, { "database": "PubMed", "id": "28294959", "url": "https://pubmed.ncbi.nlm.nih.gov/28294959" }, { "database": "PubMed", "id": "28322786", "url": "https://pubmed.ncbi.nlm.nih.gov/28322786" }, { "database": "PubMed", "id": "28346493", "url": "https://pubmed.ncbi.nlm.nih.gov/28346493" }, { "database": "PubMed", "id": "28350865", "url": "https://pubmed.ncbi.nlm.nih.gov/28350865" }, { "database": "PubMed", "id": "28368423", "url": "https://pubmed.ncbi.nlm.nih.gov/28368423" }, { "database": "PubMed", "id": "28386126", "url": "https://pubmed.ncbi.nlm.nih.gov/28386126" }, { "database": "PubMed", "id": "28395173", "url": "https://pubmed.ncbi.nlm.nih.gov/28395173" }, { "database": "PubMed", "id": "28424421", "url": "https://pubmed.ncbi.nlm.nih.gov/28424421" }, { "database": "PubMed", "id": "28426713", "url": "https://pubmed.ncbi.nlm.nih.gov/28426713" }, { "database": "PubMed", "id": "28440748", "url": "https://pubmed.ncbi.nlm.nih.gov/28440748" }, { "database": "PubMed", "id": "28560349", "url": "https://pubmed.ncbi.nlm.nih.gov/28560349" }, { "database": "PubMed", "id": "28591208", "url": "https://pubmed.ncbi.nlm.nih.gov/28591208" }, { "database": "PubMed", "id": "28665395", "url": "https://pubmed.ncbi.nlm.nih.gov/28665395" }, { "database": "PubMed", "id": "28759639", "url": "https://pubmed.ncbi.nlm.nih.gov/28759639" }, { "database": "PubMed", "id": "28821740", "url": "https://pubmed.ncbi.nlm.nih.gov/28821740" }, { "database": "PubMed", "id": "28874678", "url": "https://pubmed.ncbi.nlm.nih.gov/28874678" }, { "database": "PubMed", "id": "28875936", "url": "https://pubmed.ncbi.nlm.nih.gov/28875936" }, { "database": "PubMed", "id": "28878342", "url": "https://pubmed.ncbi.nlm.nih.gov/28878342" }, { "database": "PubMed", "id": "28883758", "url": "https://pubmed.ncbi.nlm.nih.gov/28883758" }, { "database": "PubMed", "id": "28933316", "url": "https://pubmed.ncbi.nlm.nih.gov/28933316" }, { "database": "PubMed", "id": "28987868", "url": "https://pubmed.ncbi.nlm.nih.gov/28987868" }, { "database": "PubMed", "id": "29057818", "url": "https://pubmed.ncbi.nlm.nih.gov/29057818" }, { "database": "PubMed", "id": "29109428", "url": "https://pubmed.ncbi.nlm.nih.gov/29109428" }, { "database": "PubMed", "id": "29118722", "url": "https://pubmed.ncbi.nlm.nih.gov/29118722" }, { "database": "PubMed", "id": "29121094", "url": "https://pubmed.ncbi.nlm.nih.gov/29121094" }, { "database": "PubMed", "id": "29159980", "url": "https://pubmed.ncbi.nlm.nih.gov/29159980" }, { "database": "PubMed", "id": "29180704", "url": "https://pubmed.ncbi.nlm.nih.gov/29180704" }, { "database": "PubMed", "id": "29184057", "url": "https://pubmed.ncbi.nlm.nih.gov/29184057" }, { "database": "PubMed", "id": "29241457", "url": "https://pubmed.ncbi.nlm.nih.gov/29241457" }, { "database": "PubMed", "id": "29311937", "url": "https://pubmed.ncbi.nlm.nih.gov/29311937" }, { "database": "PubMed", "id": "29358916", "url": "https://pubmed.ncbi.nlm.nih.gov/29358916" }, { "database": "PubMed", "id": "29433422", "url": "https://pubmed.ncbi.nlm.nih.gov/29433422" }, { "database": "PubMed", "id": "29453154", "url": "https://pubmed.ncbi.nlm.nih.gov/29453154" }, { "database": "PubMed", "id": "29472543", "url": "https://pubmed.ncbi.nlm.nih.gov/29472543" }, { "database": "PubMed", "id": "29487597", "url": "https://pubmed.ncbi.nlm.nih.gov/29487597" }, { "database": "PubMed", "id": "29494346", "url": "https://pubmed.ncbi.nlm.nih.gov/29494346" }, { "database": "PubMed", "id": "29500670", "url": "https://pubmed.ncbi.nlm.nih.gov/29500670" }, { "database": "PubMed", "id": "29535623", "url": "https://pubmed.ncbi.nlm.nih.gov/29535623" }, { "database": "PubMed", "id": "29560100", "url": "https://pubmed.ncbi.nlm.nih.gov/29560100" }, { "database": "PubMed", "id": "29662189", "url": "https://pubmed.ncbi.nlm.nih.gov/29662189" }, { "database": "PubMed", "id": "29700562", "url": "https://pubmed.ncbi.nlm.nih.gov/29700562" }, { "database": "PubMed", "id": "29725001", "url": "https://pubmed.ncbi.nlm.nih.gov/29725001" }, { "database": "PubMed", "id": "29769144", "url": "https://pubmed.ncbi.nlm.nih.gov/29769144" }, { "database": "PubMed", "id": "29853881", "url": "https://pubmed.ncbi.nlm.nih.gov/29853881" }, { "database": "PubMed", "id": "29855474", "url": "https://pubmed.ncbi.nlm.nih.gov/29855474" }, { "database": "PubMed", "id": "29860106", "url": "https://pubmed.ncbi.nlm.nih.gov/29860106" }, { "database": "PubMed", "id": "29867489", "url": "https://pubmed.ncbi.nlm.nih.gov/29867489" }, { "database": "PubMed", "id": "29872253", "url": "https://pubmed.ncbi.nlm.nih.gov/29872253" }, { "database": "PubMed", "id": "29920520", "url": "https://pubmed.ncbi.nlm.nih.gov/29920520" }, { "database": "PubMed", "id": "29930536", "url": "https://pubmed.ncbi.nlm.nih.gov/29930536" }, { "database": "PubMed", "id": "29962852", "url": "https://pubmed.ncbi.nlm.nih.gov/29962852" }, { "database": "PubMed", "id": "30018139", "url": "https://pubmed.ncbi.nlm.nih.gov/30018139" }, { "database": "PubMed", "id": "30065170", "url": "https://pubmed.ncbi.nlm.nih.gov/30065170" }, { "database": "PubMed", "id": "30103648", "url": "https://pubmed.ncbi.nlm.nih.gov/30103648" }, { "database": "PubMed", "id": "30211334", "url": "https://pubmed.ncbi.nlm.nih.gov/30211334" }, { "database": "PubMed", "id": "30237867", "url": "https://pubmed.ncbi.nlm.nih.gov/30237867" }, { "database": "PubMed", "id": "30279732", "url": "https://pubmed.ncbi.nlm.nih.gov/30279732" }, { "database": "PubMed", "id": "30384400", "url": "https://pubmed.ncbi.nlm.nih.gov/30384400" }, { "database": "PubMed", "id": "30391964", "url": "https://pubmed.ncbi.nlm.nih.gov/30391964" }, { "database": "PubMed", "id": "30413815", "url": "https://pubmed.ncbi.nlm.nih.gov/30413815" }, { "database": "PubMed", "id": "30429249", "url": "https://pubmed.ncbi.nlm.nih.gov/30429249" }, { "database": "PubMed", "id": "30442153", "url": "https://pubmed.ncbi.nlm.nih.gov/30442153" }, { "database": "PubMed", "id": "30578122", "url": "https://pubmed.ncbi.nlm.nih.gov/30578122" }, { "database": "PubMed", "id": "30635036", "url": "https://pubmed.ncbi.nlm.nih.gov/30635036" }, { "database": "PubMed", "id": "30696333", "url": "https://pubmed.ncbi.nlm.nih.gov/30696333" }, { "database": "PubMed", "id": "30823934", "url": "https://pubmed.ncbi.nlm.nih.gov/30823934" }, { "database": "PubMed", "id": "30988282", "url": "https://pubmed.ncbi.nlm.nih.gov/30988282" }, { "database": "PubMed", "id": "31112530", "url": "https://pubmed.ncbi.nlm.nih.gov/31112530" }, { "database": "PubMed", "id": "31141608", "url": "https://pubmed.ncbi.nlm.nih.gov/31141608" }, { "database": "PubMed", "id": "31182807", "url": "https://pubmed.ncbi.nlm.nih.gov/31182807" }, { "database": "PubMed", "id": "31246957", "url": "https://pubmed.ncbi.nlm.nih.gov/31246957" }, { "database": "PubMed", "id": "31307481", "url": "https://pubmed.ncbi.nlm.nih.gov/31307481" }, { "database": "PubMed", "id": "31337981", "url": "https://pubmed.ncbi.nlm.nih.gov/31337981" }, { "database": "PubMed", "id": "31398213", "url": "https://pubmed.ncbi.nlm.nih.gov/31398213" }, { "database": "PubMed", "id": "31399584", "url": "https://pubmed.ncbi.nlm.nih.gov/31399584" }, { "database": "PubMed", "id": "31420304", "url": "https://pubmed.ncbi.nlm.nih.gov/31420304" }, { "database": "PubMed", "id": "31470507", "url": "https://pubmed.ncbi.nlm.nih.gov/31470507" }, { "database": "PubMed", "id": "31474552", "url": "https://pubmed.ncbi.nlm.nih.gov/31474552" }, { "database": "PubMed", "id": "31534518", "url": "https://pubmed.ncbi.nlm.nih.gov/31534518" }, { "database": "PubMed", "id": "31570855", "url": "https://pubmed.ncbi.nlm.nih.gov/31570855" }, { "database": "PubMed", "id": "31614949", "url": "https://pubmed.ncbi.nlm.nih.gov/31614949" }, { "database": "PubMed", "id": "31652791", "url": "https://pubmed.ncbi.nlm.nih.gov/31652791" }, { "database": "PubMed", "id": "31767175", "url": "https://pubmed.ncbi.nlm.nih.gov/31767175" }, { "database": "PubMed", "id": "31767180", "url": "https://pubmed.ncbi.nlm.nih.gov/31767180" }, { "database": "PubMed", "id": "31918924", "url": "https://pubmed.ncbi.nlm.nih.gov/31918924" }, { "database": "PubMed", "id": "31924750", "url": "https://pubmed.ncbi.nlm.nih.gov/31924750" }, { "database": "PubMed", "id": "31949275", "url": "https://pubmed.ncbi.nlm.nih.gov/31949275" }, { "database": "PubMed", "id": "32046324", "url": "https://pubmed.ncbi.nlm.nih.gov/32046324" }, { "database": "PubMed", "id": "32075060", "url": "https://pubmed.ncbi.nlm.nih.gov/32075060" }, { "database": "PubMed", "id": "32101748", "url": "https://pubmed.ncbi.nlm.nih.gov/32101748" }, { "database": "PubMed", "id": "32153410", "url": "https://pubmed.ncbi.nlm.nih.gov/32153410" }, { "database": "PubMed", "id": "32163656", "url": "https://pubmed.ncbi.nlm.nih.gov/32163656" }, { "database": "PubMed", "id": "32194423", "url": "https://pubmed.ncbi.nlm.nih.gov/32194423" }, { "database": "PubMed", "id": "32312949", "url": "https://pubmed.ncbi.nlm.nih.gov/32312949" }, { "database": "PubMed", "id": "32366272", "url": "https://pubmed.ncbi.nlm.nih.gov/32366272" }, { "database": "PubMed", "id": "32373532", "url": "https://pubmed.ncbi.nlm.nih.gov/32373532" }, { "database": "PubMed", "id": "32422541", "url": "https://pubmed.ncbi.nlm.nih.gov/32422541" }, { "database": "PubMed", "id": "32483262", "url": "https://pubmed.ncbi.nlm.nih.gov/32483262" }, { "database": "PubMed", "id": "32493400", "url": "https://pubmed.ncbi.nlm.nih.gov/32493400" }, { "database": "PubMed", "id": "32518366", "url": "https://pubmed.ncbi.nlm.nih.gov/32518366" }, { "database": "PubMed", "id": "32566257", "url": "https://pubmed.ncbi.nlm.nih.gov/32566257" }, { "database": "PubMed", "id": "32641498", "url": "https://pubmed.ncbi.nlm.nih.gov/32641498" }, { "database": "PubMed", "id": "32728173", "url": "https://pubmed.ncbi.nlm.nih.gov/32728173" }, { "database": "PubMed", "id": "32783890", "url": "https://pubmed.ncbi.nlm.nih.gov/32783890" }, { "database": "PubMed", "id": "32796834", "url": "https://pubmed.ncbi.nlm.nih.gov/32796834" }, { "database": "PubMed", "id": "32859869", "url": "https://pubmed.ncbi.nlm.nih.gov/32859869" }, { "database": "PubMed", "id": "33012785", "url": "https://pubmed.ncbi.nlm.nih.gov/33012785" }, { "database": "PubMed", "id": "33038070", "url": "https://pubmed.ncbi.nlm.nih.gov/33038070" }, { "database": "PubMed", "id": "33071755", "url": "https://pubmed.ncbi.nlm.nih.gov/33071755" }, { "database": "PubMed", "id": "33177089", "url": "https://pubmed.ncbi.nlm.nih.gov/33177089" }, { "database": "PubMed", "id": "33184378", "url": "https://pubmed.ncbi.nlm.nih.gov/33184378" }, { "database": "PubMed", "id": "33184414", "url": "https://pubmed.ncbi.nlm.nih.gov/33184414" }, { "database": "PubMed", "id": "33210868", "url": "https://pubmed.ncbi.nlm.nih.gov/33210868" }, { "database": "PubMed", "id": "33214645", "url": "https://pubmed.ncbi.nlm.nih.gov/33214645" }, { "database": "PubMed", "id": "33226552", "url": "https://pubmed.ncbi.nlm.nih.gov/33226552" }, { "database": "PubMed", "id": "33275593", "url": "https://pubmed.ncbi.nlm.nih.gov/33275593" }, { "database": "PubMed", "id": "33348907", "url": "https://pubmed.ncbi.nlm.nih.gov/33348907" }, { "database": "PubMed", "id": "33413592", "url": "https://pubmed.ncbi.nlm.nih.gov/33413592" }, { "database": "PubMed", "id": "33414476", "url": "https://pubmed.ncbi.nlm.nih.gov/33414476" }, { "database": "PubMed", "id": "33435535", "url": "https://pubmed.ncbi.nlm.nih.gov/33435535" }, { "database": "PubMed", "id": "33486894", "url": "https://pubmed.ncbi.nlm.nih.gov/33486894" }, { "database": "PubMed", "id": "33500390", "url": "https://pubmed.ncbi.nlm.nih.gov/33500390" }, { "database": "PubMed", "id": "33595435", "url": "https://pubmed.ncbi.nlm.nih.gov/33595435" }, { "database": "PubMed", "id": "33629064", "url": "https://pubmed.ncbi.nlm.nih.gov/33629064" }, { "database": "PubMed", "id": "33633735", "url": "https://pubmed.ncbi.nlm.nih.gov/33633735" }, { "database": "PubMed", "id": "33649479", "url": "https://pubmed.ncbi.nlm.nih.gov/33649479" }, { "database": "PubMed", "id": "33669811", "url": "https://pubmed.ncbi.nlm.nih.gov/33669811" }, { "database": "PubMed", "id": "33869980", "url": "https://pubmed.ncbi.nlm.nih.gov/33869980" }, { "database": "PubMed", "id": "33897895", "url": "https://pubmed.ncbi.nlm.nih.gov/33897895" }, { "database": "PubMed", "id": "33931442", "url": "https://pubmed.ncbi.nlm.nih.gov/33931442" }, { "database": "PubMed", "id": "33941789", "url": "https://pubmed.ncbi.nlm.nih.gov/33941789" }, { "database": "PubMed", "id": "33993653", "url": "https://pubmed.ncbi.nlm.nih.gov/33993653" }, { "database": "PubMed", "id": "34366869", "url": "https://pubmed.ncbi.nlm.nih.gov/34366869" }, { "database": "PubMed", "id": "35122865", "url": "https://pubmed.ncbi.nlm.nih.gov/35122865" }, { "database": "PubMed", "id": "35224167", "url": "https://pubmed.ncbi.nlm.nih.gov/35224167" }, { "database": "PubMed", "id": "35477177", "url": "https://pubmed.ncbi.nlm.nih.gov/35477177" }, { "database": "PubMed", "id": "35748215", "url": "https://pubmed.ncbi.nlm.nih.gov/35748215" }, { "database": "PubMed", "id": "36148310", "url": "https://pubmed.ncbi.nlm.nih.gov/36148310" }, { "database": "PubMed", "id": "36198369", "url": "https://pubmed.ncbi.nlm.nih.gov/36198369" }, { "database": "PubMed", "id": "36297523", "url": "https://pubmed.ncbi.nlm.nih.gov/36297523" }, { "database": "PubMed", "id": "36405694", "url": "https://pubmed.ncbi.nlm.nih.gov/36405694" }, { "database": "PubMed", "id": "9927197", "url": "https://pubmed.ncbi.nlm.nih.gov/9927197" }, { "database": "PubMed", "id": "18288188", "url": "https://pubmed.ncbi.nlm.nih.gov/18288188" }, { "database": "PubMed", "id": "26359501", "url": "https://pubmed.ncbi.nlm.nih.gov/26359501" }, { "database": "PubMed", "id": "15753085", "url": "https://pubmed.ncbi.nlm.nih.gov/15753085" } ], "site_lbl": "Thr308", "uniprot_canonical_ac": "P31750-1" } ], "record_id": "pubmed.28322786", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The metabolic syndrome- associated small G protein ARL15 plays a role in adipocyte differentiation and adiponectin secretion.", "journal": "Scientific reports", "date": "2017", "authors": "Rocha N, Payne F, Huang-Doran I, Sleigh A, Fawcett K, Adams C, Stears A, Saudek V, O'Rahilly S, Barroso I, Semple RK", "reference": { "type": "PubMed", "id": "29242557", "url": "https://pubmed.ncbi.nlm.nih.gov/29242557" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8BGR6-1", "protein_name": "ADP-ribosylation factor-like protein 15", "gene_name": "Arl15", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q8BGR6", "url": "https://www.uniprot.org/uniprotkb/Q8BGR6" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.29242557", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Cleft palate and minor metabolic disturbances in a mouse global Arl15 gene knockout.", "journal": "FASEB journal : official publication of the Federation of American Societies for Experimental Biology", "date": "2023-11", "authors": "Bai Ying, Bentley Liz, Ma Chao, Naveenan Navaratnam, Cleak James, Wu Yixing, Simon Michelle M, Westerberg Henrik, Ca\u00f1as Ram\u00f3n Casero, Horner Neil, Pandey Rajesh, Paphiti Keanu, Schulze Ulrike, Miann\u00e9 Joffrey, Hough Tertius, Teboul Lydia, de Baaij Jeroen H F, Cox Roger D", "reference": { "type": "PubMed", "id": "37773757", "url": "https://pubmed.ncbi.nlm.nih.gov/37773757" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8BGR6-1", "protein_name": "ADP-ribosylation factor-like protein 15", "gene_name": "Arl15", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q8BGR6", "url": "https://www.uniprot.org/uniprotkb/Q8BGR6" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.37773757", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "MAST3: a novel IBD risk factor that modulates TLR4 signaling.", "journal": "Genes and immunity", "date": "2008", "authors": "Labbe C, Goyette P, Lefebvre C, Stevens C, Green T, Tello-Ruiz MK, Cao Z, Landry AL, Stempak J, Annese V, Latiano A, Brant SR, Duerr RH, Taylor KD, Cho JH, Steinhart AH, Daly MJ, Silverberg MS, Xavier RJ, Rioux JD", "reference": { "type": "PubMed", "id": "18650832", "url": "https://pubmed.ncbi.nlm.nih.gov/18650832" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q3U214-1", "protein_name": "Microtubule-associated serine/threonine-protein kinase 3", "gene_name": "Mast3", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "O60307-1", "protein_name": "Microtubule-associated serine/threonine-protein kinase 3", "gene_name": "MAST3", "tax_name": "Human" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q3U214", "url": "https://www.uniprot.org/uniprotkb/Q3U214" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.18650832", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "ARPP-16 Is a Striatal-Enriched Inhibitor of Protein Phosphatase 2A Regulated by Microtubule-Associated Serine/Threonine Kinase 3 (Mast 3 Kinase).", "journal": "The Journal of neuroscience : the official journal of the Society for Neuroscience", "date": "2017", "authors": "Andrade EC, Musante V, Horiuchi A, Matsuzaki H, Brody AH, Wu T, Greengard P, Taylor JR, Nairn AC", "reference": { "type": "PubMed", "id": "28167675", "url": "https://pubmed.ncbi.nlm.nih.gov/28167675" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q3U214-1", "protein_name": "Microtubule-associated serine/threonine-protein kinase 3", "gene_name": "Mast3", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P56211-1", "protein_name": "cAMP-regulated phosphoprotein 19", "gene_name": "ARPP19", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60307-1", "protein_name": "Microtubule-associated serine/threonine-protein kinase 3", "gene_name": "MAST3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9WV06-1", "protein_name": "Ankyrin repeat domain-containing protein 2", "gene_name": "Ankrd2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P30153-1", "protein_name": "Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform", "gene_name": "PPP2R1A", "tax_name": "Human" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q3U214", "url": "https://www.uniprot.org/uniprotkb/Q3U214" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.28167675", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Pathogenic MAST3 Variants in the STK Domain Are Associated with Epilepsy.", "journal": "Ann. Neurol.", "date": "2021", "authors": "Spinelli E, Christensen KR, Bryant E, Schneider A, Rakotomamonjy J, Muir AM, Giannelli J, Littlejohn RO, Roeder ER, Schmidt B, Wilson WG, Marco EJ, Iwama K, Kumada S, Pisano T, Barba C, Vetro A, Brilstra EH, van Jaarsveld RH, Matsumoto N, Goldberg-Stern H, Carney PW, Andrews PI, El Achkar CM, Berkovic S, Rodan LH, McWalter K, Guerrini R, Scheffer IE, Mefford HC, Mandelstam S, Laux L, Millichap JJ, Guemez-Gamboa A, Nairn AC, Carvill GL", "reference": { "type": "PubMed", "id": "34185323", "url": "https://pubmed.ncbi.nlm.nih.gov/34185323" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q3U214-1", "protein_name": "Microtubule-associated serine/threonine-protein kinase 3", "gene_name": "Mast3", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "O60307-1", "protein_name": "Microtubule-associated serine/threonine-protein kinase 3", "gene_name": "MAST3", "tax_name": "Human" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q3U214", "url": "https://www.uniprot.org/uniprotkb/Q3U214" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.34185323", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Functional analysis of C-TAK1 substrate binding and identification of PKP2 as a new C-TAK1 substrate.", "journal": "EMBO J.", "date": "2003", "authors": "Muller J, Ritt DA, Copeland TD, Morrison DK", "reference": { "type": "PubMed", "id": "12941695", "url": "https://pubmed.ncbi.nlm.nih.gov/12941695" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q03141-1", "protein_name": "MAP/microtubule affinity-regulating kinase 3", "gene_name": "Mark3", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q61097-1", "protein_name": "Kinase suppressor of Ras 1", "gene_name": "Ksr1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q99959-1", "protein_name": "Plakophilin-2", "gene_name": "PKP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IVT5-1", "protein_name": "Kinase suppressor of Ras 1", "gene_name": "KSR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30307-1", "protein_name": "M-phase inducer phosphatase 3", "gene_name": "CDC25C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27448-5", "protein_name": "MAP/microtubule affinity-regulating kinase 3", "gene_name": "MARK3", "tax_name": "Human" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q03141", "url": "https://www.uniprot.org/uniprotkb/Q03141" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "mutagenesis": [ { "start_pos": 382, "end_pos": 382, "sequence_org": "L", "sequence_mut": "A", "comment": "No effect on interaction with MARK3.", "evidence": [ { "database": "UniProtKB", "id": "Q61097", "url": "https://www.uniprot.org/uniprotkb/Q61097" }, { "database": "PubMed", "id": "12941695", "url": "https://pubmed.ncbi.nlm.nih.gov/12941695" } ], "uniprot_canonical_ac": "Q61097-1" }, { "start_pos": 387, "end_pos": 387, "sequence_org": "L", "sequence_mut": "A", "comment": "Reduces interaction with MARK3. Reduces phosphorylation of S-392 by MARK3.", "evidence": [ { "database": "UniProtKB", "id": "Q61097", "url": "https://www.uniprot.org/uniprotkb/Q61097" }, { "database": "PubMed", "id": "12941695", "url": "https://pubmed.ncbi.nlm.nih.gov/12941695" } ], "uniprot_canonical_ac": "Q61097-1" }, { "start_pos": 389, "end_pos": 389, "sequence_org": "R", "sequence_mut": "A", "comment": "Reduces phosphorylation of S-392 by MARK3.", "evidence": [ { "database": "UniProtKB", "id": "Q61097", "url": "https://www.uniprot.org/uniprotkb/Q61097" }, { "database": "PubMed", "id": "12941695", "url": "https://pubmed.ncbi.nlm.nih.gov/12941695" } ], "uniprot_canonical_ac": "Q61097-1" }, { "start_pos": 390, "end_pos": 390, "sequence_org": "T", "sequence_mut": "A", "comment": "No effect on phosphorylation of S-392 by MARK3.", "evidence": [ { "database": "UniProtKB", "id": "Q61097", "url": "https://www.uniprot.org/uniprotkb/Q61097" }, { "database": "PubMed", "id": "12941695", "url": "https://pubmed.ncbi.nlm.nih.gov/12941695" } ], "uniprot_canonical_ac": "Q61097-1" }, { "start_pos": 391, "end_pos": 391, "sequence_org": "E", "sequence_mut": "A", "comment": "No effect on phosphorylation of S-392 by MARK3.", "evidence": [ { "database": "UniProtKB", "id": "Q61097", "url": "https://www.uniprot.org/uniprotkb/Q61097" }, { "database": "PubMed", "id": "12941695", "url": "https://pubmed.ncbi.nlm.nih.gov/12941695" } ], "uniprot_canonical_ac": "Q61097-1" }, { "start_pos": 392, "end_pos": 392, "sequence_org": "S", "sequence_mut": "A", "comment": "Constitutive targeting to the plasma membrane; when associated with A-297. No effect on interaction with MARK3. Abolishes phosphorylation by MARK3.", "evidence": [ { "database": "UniProtKB", "id": "Q61097", "url": "https://www.uniprot.org/uniprotkb/Q61097" }, { "database": "PubMed", "id": "11741534", "url": "https://pubmed.ncbi.nlm.nih.gov/11741534" }, { "database": "PubMed", "id": "12941695", "url": "https://pubmed.ncbi.nlm.nih.gov/12941695" } ], "uniprot_canonical_ac": "Q61097-1" }, { "start_pos": 393, "end_pos": 393, "sequence_org": "V", "sequence_mut": "A", "comment": "Reduces phosphorylation of S-392 by MARK3.", "evidence": [ { "database": "UniProtKB", "id": "Q61097", "url": "https://www.uniprot.org/uniprotkb/Q61097" }, { "database": "PubMed", "id": "12941695", "url": "https://pubmed.ncbi.nlm.nih.gov/12941695" } ], "uniprot_canonical_ac": "Q61097-1" }, { "start_pos": 394, "end_pos": 394, "sequence_org": "P", "sequence_mut": "A", "comment": "No effect on phosphorylation of S-392 by MARK3.", "evidence": [ { "database": "UniProtKB", "id": "Q61097", "url": "https://www.uniprot.org/uniprotkb/Q61097" }, { "database": "PubMed", "id": "12941695", "url": "https://pubmed.ncbi.nlm.nih.gov/12941695" } ], "uniprot_canonical_ac": "Q61097-1" }, { "start_pos": 395, "end_pos": 395, "sequence_org": "S", "sequence_mut": "A", "comment": "No effect on phosphorylation of S-392 by MARK3.", "evidence": [ { "database": "UniProtKB", "id": "Q61097", "url": "https://www.uniprot.org/uniprotkb/Q61097" }, { "database": "PubMed", "id": "12941695", "url": "https://pubmed.ncbi.nlm.nih.gov/12941695" } ], "uniprot_canonical_ac": "Q61097-1" }, { "start_pos": 396, "end_pos": 396, "sequence_org": "D", "sequence_mut": "A", "comment": "No effect on phosphorylation of S-392 by MARK3.", "evidence": [ { "database": "UniProtKB", "id": "Q61097", "url": "https://www.uniprot.org/uniprotkb/Q61097" }, { "database": "PubMed", "id": "12941695", "url": "https://pubmed.ncbi.nlm.nih.gov/12941695" } ], "uniprot_canonical_ac": "Q61097-1" }, { "start_pos": 397, "end_pos": 397, "sequence_org": "I", "sequence_mut": "A", "comment": "Decrease in MARK3 binding; when associated with A-401. Abolishes interaction with MARK3. Reduces phosphorylation of S-392 by MARK3.", "evidence": [ { "database": "UniProtKB", "id": "Q61097", "url": "https://www.uniprot.org/uniprotkb/Q61097" }, { "database": "PubMed", "id": "11741534", "url": "https://pubmed.ncbi.nlm.nih.gov/11741534" }, { "database": "PubMed", "id": "12941695", "url": "https://pubmed.ncbi.nlm.nih.gov/12941695" } ], "uniprot_canonical_ac": "Q61097-1" }, { "start_pos": 400, "end_pos": 400, "sequence_org": "P", "sequence_mut": "A", "comment": "No effect on interaction with MARK3.", "evidence": [ { "database": "UniProtKB", "id": "Q61097", "url": "https://www.uniprot.org/uniprotkb/Q61097" }, { "database": "PubMed", "id": "12941695", "url": "https://pubmed.ncbi.nlm.nih.gov/12941695" } ], "uniprot_canonical_ac": "Q61097-1" }, { "start_pos": 401, "end_pos": 401, "sequence_org": "V", "sequence_mut": "A", "comment": "Decrease in MARK3 binding; when associated with A-397. No effect on interaction with MARK3.", "evidence": [ { "database": "UniProtKB", "id": "Q61097", "url": "https://www.uniprot.org/uniprotkb/Q61097" }, { "database": "PubMed", "id": "11741534", "url": "https://pubmed.ncbi.nlm.nih.gov/11741534" }, { "database": "PubMed", "id": "12941695", "url": "https://pubmed.ncbi.nlm.nih.gov/12941695" } ], "uniprot_canonical_ac": "Q61097-1" }, { "start_pos": 403, "end_pos": 403, "sequence_org": "R", "sequence_mut": "A", "comment": "No effect on interaction with MARK3.", "evidence": [ { "database": "UniProtKB", "id": "Q61097", "url": "https://www.uniprot.org/uniprotkb/Q61097" }, { "database": "PubMed", "id": "12941695", "url": "https://pubmed.ncbi.nlm.nih.gov/12941695" } ], "uniprot_canonical_ac": "Q61097-1" }, { "start_pos": 413, "end_pos": 413, "sequence_org": "P", "sequence_mut": "A", "comment": "No effect on interaction with MARK3.", "evidence": [ { "database": "UniProtKB", "id": "Q61097", "url": "https://www.uniprot.org/uniprotkb/Q61097" }, { "database": "PubMed", "id": "12941695", "url": "https://pubmed.ncbi.nlm.nih.gov/12941695" } ], "uniprot_canonical_ac": "Q61097-1" }, { "start_pos": 82, "end_pos": 82, "sequence_org": "S", "sequence_mut": "A", "comment": "Abolishes phosphorylation by MARK3.", "evidence": [ { "database": "UniProtKB", "id": "Q99959", "url": "https://www.uniprot.org/uniprotkb/Q99959" }, { "database": "PubMed", "id": "12941695", "url": "https://pubmed.ncbi.nlm.nih.gov/12941695" } ], "uniprot_canonical_ac": "Q99959-1" }, { "start_pos": 87, "end_pos": 87, "sequence_org": "V", "sequence_mut": "A", "comment": "Reduces phosphorylation of S-82 by MARK3. Reduces interaction with MARK3.", "evidence": [ { "database": "UniProtKB", "id": "Q99959", "url": "https://www.uniprot.org/uniprotkb/Q99959" }, { "database": "PubMed", "id": "12941695", "url": "https://pubmed.ncbi.nlm.nih.gov/12941695" } ], "uniprot_canonical_ac": "Q99959-1" }, { "start_pos": 211, "end_pos": 211, "sequence_org": "L", "sequence_mut": "A", "comment": "Reduces phosphorylation by MARK3 and CHEK1.", "evidence": [ { "database": "UniProtKB", "id": "P30307", "url": "https://www.uniprot.org/uniprotkb/P30307" }, { "database": "PubMed", "id": "12941695", "url": "https://pubmed.ncbi.nlm.nih.gov/12941695" } ], "uniprot_canonical_ac": "P30307-1" }, { "start_pos": 216, "end_pos": 216, "sequence_org": "S", "sequence_mut": "A", "comment": "No effect on interaction with MARK3. Abolishes phosphorylation by MARK3.", "evidence": [ { "database": "UniProtKB", "id": "P30307", "url": "https://www.uniprot.org/uniprotkb/P30307" }, { "database": "PubMed", "id": "12941695", "url": "https://pubmed.ncbi.nlm.nih.gov/12941695" } ], "uniprot_canonical_ac": "P30307-1" }, { "start_pos": 221, "end_pos": 221, "sequence_org": "L", "sequence_mut": "A", "comment": "Abolishes interaction with MARK3. Reduces phosphorylation of S-216 by MARK3.", "evidence": [ { "database": "UniProtKB", "id": "P30307", "url": "https://www.uniprot.org/uniprotkb/P30307" }, { "database": "PubMed", "id": "12941695", "url": "https://pubmed.ncbi.nlm.nih.gov/12941695" } ], "uniprot_canonical_ac": "P30307-1" }, { "start_pos": 242, "end_pos": 244, "sequence_org": "KKK", "sequence_mut": "AAA", "comment": "No effect on interaction with MARK3.", "evidence": [ { "database": "UniProtKB", "id": "P30307", "url": "https://www.uniprot.org/uniprotkb/P30307" }, { "database": "PubMed", "id": "12941695", "url": "https://pubmed.ncbi.nlm.nih.gov/12941695" } ], "uniprot_canonical_ac": "P30307-1" } ], "phosphorylation": [ { "start_pos": 297, "end_pos": 297, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by MARK3", "evidence": [ { "database": "UniProtKB", "id": "Q61097", "url": "https://www.uniprot.org/uniprotkb/Q61097" }, { "database": "PRO", "id": "Q61097", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=Q61097" }, { "database": "iPTMnet", "id": "Q61097", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q61097" }, { "database": "PubMed", "id": "9858547", "url": "https://pubmed.ncbi.nlm.nih.gov/9858547" }, { "database": "PubMed", "id": "12941695", "url": "https://pubmed.ncbi.nlm.nih.gov/12941695" }, { "database": "PubMed", "id": "11741534", "url": "https://pubmed.ncbi.nlm.nih.gov/11741534" } ], "site_lbl": "Ser297", "uniprot_canonical_ac": "Q61097-1" }, { "start_pos": 392, "end_pos": 392, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by MARK3", "evidence": [ { "database": "UniProtKB", "id": "Q61097", "url": "https://www.uniprot.org/uniprotkb/Q61097" }, { "database": "PRO", "id": "Q61097", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=Q61097" }, { "database": "iPTMnet", "id": "Q61097", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q61097" }, { "database": "PubMed", "id": "9858547", "url": "https://pubmed.ncbi.nlm.nih.gov/9858547" }, { "database": "PubMed", "id": "15371409", "url": "https://pubmed.ncbi.nlm.nih.gov/15371409" }, { "database": "PubMed", "id": "22206009", "url": "https://pubmed.ncbi.nlm.nih.gov/22206009" }, { "database": "PubMed", "id": "12941695", "url": "https://pubmed.ncbi.nlm.nih.gov/12941695" } ], "site_lbl": "Ser392", "uniprot_canonical_ac": "Q61097-1" }, { "start_pos": 82, "end_pos": 82, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by MARK3", "evidence": [ { "database": "UniProtKB", "id": "Q99959", "url": "https://www.uniprot.org/uniprotkb/Q99959" }, { "database": "iPTMnet", "id": "Q99959", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q99959" }, { "database": "PubMed", "id": "12941695", "url": "https://pubmed.ncbi.nlm.nih.gov/12941695" } ], "site_lbl": "Ser82", "uniprot_canonical_ac": "Q99959-1" } ], "record_id": "pubmed.12941695", "abstract": "", "glycosylation": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 3 }, { "field": "total_sites", "count": 3 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Solution structure of the kinase-associated domain 1 of mouse microtubule-associated protein/microtubule affinity-regulating kinase 3.", "journal": "Protein Sci.", "date": "2006", "authors": "Tochio Naoya, Koshiba Seizo, Kobayashi Naohiro, Inoue Makoto, Yabuki Takashi, Aoki Masaaki, Seki Eiko, Matsuda Takayoshi, Tomo Yasuko, Motoda Yoko, Kobayashi Atsuo, Tanaka Akiko, Hayashizaki Yoshihide, Terada Takaho, Shirouzu Mikako, Kigawa Takanori, Yokoyama Shigeyuki", "reference": { "type": "PubMed", "id": "17075132", "url": "https://pubmed.ncbi.nlm.nih.gov/17075132" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q03141-1", "protein_name": "MAP/microtubule affinity-regulating kinase 3", "gene_name": "Mark3", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q03141", "url": "https://www.uniprot.org/uniprotkb/Q03141" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.17075132", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Genomic variants within chromosome 14q32.32 regulate bone mass through MARK3 signaling in osteoblasts.", "journal": "The Journal of clinical investigation", "date": "2021", "authors": "Zhang Q, Mesner LD, Calabrese GM, Dirckx N, Li Z, Verardo A, Yang Q, Tower RJ, Faugere MC, Farber CR, Clemens TL", "reference": { "type": "PubMed", "id": "33792563", "url": "https://pubmed.ncbi.nlm.nih.gov/33792563" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q03141-1", "protein_name": "MAP/microtubule affinity-regulating kinase 3", "gene_name": "Mark3", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q03141", "url": "https://www.uniprot.org/uniprotkb/Q03141" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.33792563", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Zcchc11-dependent uridylation of microRNA directs cytokine expression.", "journal": "Nature cell biology", "date": "2009", "authors": "Jones MR, Quinton LJ, Blahna MT, Neilson JR, Fu S, Ivanov AR, Wolf DA, Mizgerd JP", "reference": { "type": "PubMed", "id": "19701194", "url": "https://pubmed.ncbi.nlm.nih.gov/19701194" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "B2RX14-1", "protein_name": "Terminal uridylyltransferase 4", "gene_name": "Tut4", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q5TAX3-1", "protein_name": "Terminal uridylyltransferase 4", "gene_name": "TUT4", "tax_name": "Human" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "B2RX14", "url": "https://www.uniprot.org/uniprotkb/B2RX14" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "mutagenesis": [ { "start_pos": 1026, "end_pos": 1026, "sequence_org": "D", "sequence_mut": "A", "comment": "Loss of nucleotidyltransferase activity and oocytes are unable to support early embryonic development; when associated with A-1028.", "evidence": [ { "database": "UniProtKB", "id": "B2RX14", "url": "https://www.uniprot.org/uniprotkb/B2RX14" }, { "database": "PubMed", "id": "28792939", "url": "https://pubmed.ncbi.nlm.nih.gov/28792939" }, { "database": "PubMed", "id": "19701194", "url": "https://pubmed.ncbi.nlm.nih.gov/19701194" } ], "uniprot_canonical_ac": "B2RX14-1" }, { "start_pos": 1028, "end_pos": 1028, "sequence_org": "D", "sequence_mut": "A", "comment": "Loss of nucleotidyltransferase activity and oocytes are unable to support early embryonic development; when associated with A-1026.", "evidence": [ { "database": "UniProtKB", "id": "B2RX14", "url": "https://www.uniprot.org/uniprotkb/B2RX14" }, { "database": "PubMed", "id": "19701194", "url": "https://pubmed.ncbi.nlm.nih.gov/19701194" }, { "database": "PubMed", "id": "28792939", "url": "https://pubmed.ncbi.nlm.nih.gov/28792939" } ], "uniprot_canonical_ac": "B2RX14-1" } ], "record_id": "pubmed.19701194", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "TUT4 in concert with Lin28 suppresses microRNA biogenesis through pre-microRNA uridylation.", "journal": "Cell", "date": "2009", "authors": "Heo I, Joo C, Kim YK, Ha M, Yoon MJ, Cho J, Yeom KH, Han J, Kim VN", "reference": { "type": "PubMed", "id": "19703396", "url": "https://pubmed.ncbi.nlm.nih.gov/19703396" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "B2RX14-1", "protein_name": "Terminal uridylyltransferase 4", "gene_name": "Tut4", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q5TAX3-1", "protein_name": "Terminal uridylyltransferase 4", "gene_name": "TUT4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8K3Y3-1", "protein_name": "Protein lin-28 homolog A", "gene_name": "Lin28a", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q5VYS8-1", "protein_name": "Terminal uridylyltransferase 7", "gene_name": "TUT7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZN17-1", "protein_name": "Protein lin-28 homolog B", "gene_name": "LIN28B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H9Z2-1", "protein_name": "Protein lin-28 homolog A", "gene_name": "LIN28A", "tax_name": "Human" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "B2RX14", "url": "https://www.uniprot.org/uniprotkb/B2RX14" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "mutagenesis": [ { "start_pos": 1011, "end_pos": 1011, "sequence_org": "D", "sequence_mut": "A", "comment": "Loss of nucleotidyltransferase activity and stabilization of pre-let-7 miRNAs. Abolishes inhibition of LIRE1 retrotransposition.", "evidence": [ { "database": "UniProtKB", "id": "Q5TAX3", "url": "https://www.uniprot.org/uniprotkb/Q5TAX3" }, { "database": "PubMed", "id": "25480299", "url": "https://pubmed.ncbi.nlm.nih.gov/25480299" }, { "database": "PubMed", "id": "19703396", "url": "https://pubmed.ncbi.nlm.nih.gov/19703396" }, { "database": "PubMed", "id": "30122351", "url": "https://pubmed.ncbi.nlm.nih.gov/30122351" } ], "uniprot_canonical_ac": "Q5TAX3-1" } ], "record_id": "pubmed.19703396", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Lin28 recruits the TUTase Zcchc11 to inhibit let-7 maturation in mouse embryonic stem cells.", "journal": "Nature structural & molecular biology", "date": "2009", "authors": "Hagan JP, Piskounova E, Gregory RI", "reference": { "type": "PubMed", "id": "19713958", "url": "https://pubmed.ncbi.nlm.nih.gov/19713958" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "B2RX14-1", "protein_name": "Terminal uridylyltransferase 4", "gene_name": "Tut4", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "B2RX14", "url": "https://www.uniprot.org/uniprotkb/B2RX14" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.19713958", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Lin28-mediated control of let-7 microRNA expression by alternative TUTases Zcchc11 (TUT4) and Zcchc6 (TUT7).", "journal": "RNA (New York, N.Y.)", "date": "2012", "authors": "Thornton JE, Chang HM, Piskounova E, Gregory RI", "reference": { "type": "PubMed", "id": "22898984", "url": "https://pubmed.ncbi.nlm.nih.gov/22898984" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "B2RX14-1", "protein_name": "Terminal uridylyltransferase 4", "gene_name": "Tut4", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q5BLK4-1", "protein_name": "Terminal uridylyltransferase 7", "gene_name": "Tut7", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q5VYS8-1", "protein_name": "Terminal uridylyltransferase 7", "gene_name": "TUT7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H9Z2-1", "protein_name": "Protein lin-28 homolog A", "gene_name": "LIN28A", "tax_name": "Human" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "B2RX14", "url": "https://www.uniprot.org/uniprotkb/B2RX14" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "mutagenesis": [ { "start_pos": 326, "end_pos": 326, "sequence_org": "C", "sequence_mut": "A", "comment": "No effect on basal uridylation activity, but loss of LIN28A-enhanced uridylation; when associated with A-329.", "evidence": [ { "database": "UniProtKB", "id": "B2RX14", "url": "https://www.uniprot.org/uniprotkb/B2RX14" }, { "database": "PubMed", "id": "22898984", "url": "https://pubmed.ncbi.nlm.nih.gov/22898984" } ], "uniprot_canonical_ac": "B2RX14-1" }, { "start_pos": 329, "end_pos": 329, "sequence_org": "C", "sequence_mut": "A", "comment": "No effect on basal uridylation activity, but loss of LIN28A-enhanced uridylation; when associated with A-326.", "evidence": [ { "database": "UniProtKB", "id": "B2RX14", "url": "https://www.uniprot.org/uniprotkb/B2RX14" }, { "database": "PubMed", "id": "22898984", "url": "https://pubmed.ncbi.nlm.nih.gov/22898984" } ], "uniprot_canonical_ac": "B2RX14-1" } ], "record_id": "pubmed.22898984", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Zcchc11 uridylates mature miRNAs to enhance neonatal IGF-1 expression, growth, and survival.", "journal": "PLoS genetics", "date": "2012", "authors": "Jones MR, Blahna MT, Kozlowski E, Matsuura KY, Ferrari JD, Morris SA, Powers JT, Daley GQ, Quinton LJ, Mizgerd JP", "reference": { "type": "PubMed", "id": "23209448", "url": "https://pubmed.ncbi.nlm.nih.gov/23209448" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "B2RX14-1", "protein_name": "Terminal uridylyltransferase 4", "gene_name": "Tut4", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "B2RX14", "url": "https://www.uniprot.org/uniprotkb/B2RX14" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.23209448", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Multi-domain utilization by TUT4 and TUT7 in control of let-7 biogenesis.", "journal": "Nature structural & molecular biology", "date": "2017", "authors": "Faehnle CR, Walleshauser J, Joshua-Tor L", "reference": { "type": "PubMed", "id": "28671666", "url": "https://pubmed.ncbi.nlm.nih.gov/28671666" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "B2RX14-1", "protein_name": "Terminal uridylyltransferase 4", "gene_name": "Tut4", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8K3Y3-1", "protein_name": "Protein lin-28 homolog A", "gene_name": "Lin28a", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q5VYS8-1", "protein_name": "Terminal uridylyltransferase 7", "gene_name": "TUT7", "tax_name": "Human" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "B2RX14", "url": "https://www.uniprot.org/uniprotkb/B2RX14" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "mutagenesis": [ { "start_pos": 139, "end_pos": 142, "sequence_org": "CYNC", "sequence_mut": "AYNA", "comment": "Disrupts 5'-GGAG-3' motif interaction. Disrupts oligoU-addition to pre-miRNA pre-let-7 by TUT4.", "evidence": [ { "database": "UniProtKB", "id": "Q8K3Y3", "url": "https://www.uniprot.org/uniprotkb/Q8K3Y3" }, { "database": "PubMed", "id": "28671666", "url": "https://pubmed.ncbi.nlm.nih.gov/28671666" } ], "uniprot_canonical_ac": "Q8K3Y3-1" }, { "start_pos": 161, "end_pos": 164, "sequence_org": "CHFC", "sequence_mut": "AHFA", "comment": "Disrupts 5'-GGAG-3' motif interaction. Binds miRNA but not TUT4.", "evidence": [ { "database": "UniProtKB", "id": "Q8K3Y3", "url": "https://www.uniprot.org/uniprotkb/Q8K3Y3" }, { "database": "PubMed", "id": "28671666", "url": "https://pubmed.ncbi.nlm.nih.gov/28671666" } ], "uniprot_canonical_ac": "Q8K3Y3-1" }, { "start_pos": 1097, "end_pos": 1099, "sequence_org": "LPI", "sequence_mut": "WPW", "comment": "Abolishes monouridylation activity.", "evidence": [ { "database": "UniProtKB", "id": "Q5VYS8", "url": "https://www.uniprot.org/uniprotkb/Q5VYS8" }, { "database": "PubMed", "id": "28671666", "url": "https://pubmed.ncbi.nlm.nih.gov/28671666" } ], "uniprot_canonical_ac": "Q5VYS8-1" } ], "record_id": "pubmed.28671666", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "mRNA 3' uridylation and poly(A) tail length sculpt the mammalian maternal transcriptome.", "journal": "Nature", "date": "2017", "authors": "Morgan M, Much C, DiGiacomo M, Azzi C, Ivanova I, Vitsios DM, Pistolic J, Collier P, Moreira PN, Benes V, Enright AJ, O'Carroll D", "reference": { "type": "PubMed", "id": "28792939", "url": "https://pubmed.ncbi.nlm.nih.gov/28792939" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "B2RX14-1", "protein_name": "Terminal uridylyltransferase 4", "gene_name": "Tut4", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q5BLK4-1", "protein_name": "Terminal uridylyltransferase 7", "gene_name": "Tut7", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "B2RX14", "url": "https://www.uniprot.org/uniprotkb/B2RX14" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "mutagenesis": [ { "start_pos": 1026, "end_pos": 1026, "sequence_org": "D", "sequence_mut": "A", "comment": "Loss of nucleotidyltransferase activity and oocytes are unable to support early embryonic development; when associated with A-1028.", "evidence": [ { "database": "UniProtKB", "id": "B2RX14", "url": "https://www.uniprot.org/uniprotkb/B2RX14" }, { "database": "PubMed", "id": "28792939", "url": "https://pubmed.ncbi.nlm.nih.gov/28792939" }, { "database": "PubMed", "id": "19701194", "url": "https://pubmed.ncbi.nlm.nih.gov/19701194" } ], "uniprot_canonical_ac": "B2RX14-1" }, { "start_pos": 1028, "end_pos": 1028, "sequence_org": "D", "sequence_mut": "A", "comment": "Loss of nucleotidyltransferase activity and oocytes are unable to support early embryonic development; when associated with A-1026.", "evidence": [ { "database": "UniProtKB", "id": "B2RX14", "url": "https://www.uniprot.org/uniprotkb/B2RX14" }, { "database": "PubMed", "id": "19701194", "url": "https://pubmed.ncbi.nlm.nih.gov/19701194" }, { "database": "PubMed", "id": "28792939", "url": "https://pubmed.ncbi.nlm.nih.gov/28792939" } ], "uniprot_canonical_ac": "B2RX14-1" } ], "record_id": "pubmed.28792939", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "TUT4/7-mediated uridylation of a coronavirus subgenomic RNAs delays viral replication.", "journal": "Communications biology", "date": "2023-04-21", "authors": "Gupta Ankit, Li Yin, Chen Shih-Heng, Papas Brian N, Martin Negin P, Morgan Marcos", "reference": { "type": "PubMed", "id": "37085578", "url": "https://pubmed.ncbi.nlm.nih.gov/37085578" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "B2RX14-1", "protein_name": "Terminal uridylyltransferase 4", "gene_name": "Tut4", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q5BLK4-1", "protein_name": "Terminal uridylyltransferase 7", "gene_name": "Tut7", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "B2RX14", "url": "https://www.uniprot.org/uniprotkb/B2RX14" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.37085578", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Reelin controls position of autonomic neurons in the spinal cord.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2000-07-18", "authors": "Yip J W, Yip Y P, Nakajima K, Capriotti C", "reference": { "type": "PubMed", "id": "10880573", "url": "https://pubmed.ncbi.nlm.nih.gov/10880573" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q60841-1", "protein_name": "Reelin", "gene_name": "Reln", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q60841", "url": "https://www.uniprot.org/uniprotkb/Q60841" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.10880573", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Reelin is a serine protease of the extracellular matrix.", "journal": "The Journal of biological chemistry", "date": "2002-01-04", "authors": "Quattrocchi Carlo C, Wannenes Francesca, Persico Antonio M, Ciafr\u00e9 Silvia Anna, D'Arcangelo Gabriella, Farace Maria G, Keller Flavio", "reference": { "type": "PubMed", "id": "11689558", "url": "https://pubmed.ncbi.nlm.nih.gov/11689558" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q60841-1", "protein_name": "Reelin", "gene_name": "Reln", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q60841", "url": "https://www.uniprot.org/uniprotkb/Q60841" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.11689558", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Structure of a signaling-competent reelin fragment revealed by X-ray crystallography and electron tomography.", "journal": "EMBO J.", "date": "2006", "authors": "Nogi Terukazu, Yasui Norihisa, Hattori Mitsuharu, Iwasaki Kenji, Takagi Junichi", "reference": { "type": "PubMed", "id": "16858396", "url": "https://pubmed.ncbi.nlm.nih.gov/16858396" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q60841-1", "protein_name": "Reelin", "gene_name": "Reln", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q60841", "url": "https://www.uniprot.org/uniprotkb/Q60841" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.16858396", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Structure of a receptor-binding fragment of reelin and mutational analysis reveal a recognition mechanism similar to endocytic receptors.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2007", "authors": "Yasui N, Nogi T, Kitao T, Nakano Y, Hattori M, Takagi J", "reference": { "type": "PubMed", "id": "17548821", "url": "https://pubmed.ncbi.nlm.nih.gov/17548821" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q60841-1", "protein_name": "Reelin", "gene_name": "Reln", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q60841", "url": "https://www.uniprot.org/uniprotkb/Q60841" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=2E26&bu=0&command=select+.A:2145;+center+selection;+zoom+selection" }, "start_pos": 2145, "start_aa": "Asn", "end_pos": 2145, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn2145", "evidence": [ { "id": "Q60841", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q60841#ptm_processing" }, { "id": "17548821", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/17548821" }, { "id": "2E26", "database": "PDB", "url": "https://www.rcsb.org/structure/2E26" }, { "id": "3A7Q", "database": "PDB", "url": "https://www.rcsb.org/structure/3A7Q" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "Q60841-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=2E26&bu=0&command=select+.A:2269;+center+selection;+zoom+selection" }, "start_pos": 2269, "start_aa": "Asn", "end_pos": 2269, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn2269", "evidence": [ { "id": "Q60841", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q60841#ptm_processing" }, { "id": "17548821", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/17548821" }, { "id": "2E26", "database": "PDB", "url": "https://www.rcsb.org/structure/2E26" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "Q60841-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=3A7Q&bu=0&command=select+.A:2317;+center+selection;+zoom+selection" }, "start_pos": 2317, "start_aa": "Asn", "end_pos": 2317, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn2317", "evidence": [ { "id": "Q60841", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q60841#ptm_processing" }, { "id": "17548821", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/17548821" }, { "id": "3A7Q", "database": "PDB", "url": "https://www.rcsb.org/structure/3A7Q" }, { "id": "5B4X", "database": "PDB", "url": "https://www.rcsb.org/structure/5B4X" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "Q60841-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=3A7Q&bu=0&command=select+.A:2569;+center+selection;+zoom+selection" }, "start_pos": 2569, "start_aa": "Asn", "end_pos": 2569, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn2569", "evidence": [ { "id": "Q60841", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q60841#ptm_processing" }, { "id": "17548821", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/17548821" }, { "id": "3A7Q", "database": "PDB", "url": "https://www.rcsb.org/structure/3A7Q" }, { "id": "5B4X", "database": "PDB", "url": "https://www.rcsb.org/structure/5B4X" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "Q60841-1" } ], "mutagenesis": [ { "start_pos": 2360, "end_pos": 2360, "sequence_org": "K", "sequence_mut": "A", "comment": "Abolishes ApoER2-binding.", "evidence": [ { "database": "UniProtKB", "id": "Q60841", "url": "https://www.uniprot.org/uniprotkb/Q60841" }, { "database": "PubMed", "id": "17548821", "url": "https://pubmed.ncbi.nlm.nih.gov/17548821" } ], "uniprot_canonical_ac": "Q60841-1" }, { "start_pos": 2467, "end_pos": 2467, "sequence_org": "K", "sequence_mut": "A", "comment": "Abolishes ApoER2-binding.", "evidence": [ { "database": "UniProtKB", "id": "Q60841", "url": "https://www.uniprot.org/uniprotkb/Q60841" }, { "database": "PubMed", "id": "17548821", "url": "https://pubmed.ncbi.nlm.nih.gov/17548821" } ], "uniprot_canonical_ac": "Q60841-1" } ], "record_id": "pubmed.17548821", "abstract": "", "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 4 }, { "field": "total_sites", "count": 4 }, { "field": "n_linked_sites", "count": 4 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 4 }, { "field": "exact_n_linked_sites", "count": 4 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "icn3d_view.label", "icn3d_view.url", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl", "filter_code", "uniprot_canonical_ac" ] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 4 }, { "field": "total_sites", "count": 4 }, { "field": "n_linked_sites", "count": 4 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 4 }, { "field": "exact_n_linked_sites", "count": 4 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "icn3d_view.label", "icn3d_view.url", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl", "filter_code", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Functional importance of covalent homodimer of reelin protein linked via its central region.", "journal": "The Journal of biological chemistry", "date": "2011", "authors": "Yasui N, Kitago Y, Beppu A, Kohno T, Morishita S, Gomi H, Nagae M, Hattori M, Takagi J", "reference": { "type": "PubMed", "id": "21844191", "url": "https://pubmed.ncbi.nlm.nih.gov/21844191" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q60841-1", "protein_name": "Reelin", "gene_name": "Reln", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q60841", "url": "https://www.uniprot.org/uniprotkb/Q60841" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "mutagenesis": [ { "start_pos": 2101, "end_pos": 2101, "sequence_org": "C", "sequence_mut": "A", "comment": "Fails to assemble into disulfide-bonded multimers, while still exhibiting non-covalently associated high molecular weight oligomeric states in solution; retains binding to LRP8 and VLDR receptors but fails to show signaling activity.", "evidence": [ { "database": "UniProtKB", "id": "Q60841", "url": "https://www.uniprot.org/uniprotkb/Q60841" }, { "database": "PubMed", "id": "21844191", "url": "https://pubmed.ncbi.nlm.nih.gov/21844191" } ], "uniprot_canonical_ac": "Q60841-1" } ], "record_id": "pubmed.21844191", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The reeler gene encodes a protein with an EGF-like motif expressed by pioneer neurons.", "journal": "Nat. Genet.", "date": "1995", "authors": "Hirotsune S, Takahara T, Sasaki N, Hirose K, Yoshiki A, Ohashi T, Kusakabe M, Murakami Y, Muramatsu M, Watanabe S", "reference": { "type": "PubMed", "id": "7647795", "url": "https://pubmed.ncbi.nlm.nih.gov/7647795" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q60841-1", "protein_name": "Reelin", "gene_name": "Reln", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q60841", "url": "https://www.uniprot.org/uniprotkb/Q60841" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.7647795", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A protein related to extracellular matrix proteins deleted in the mouse mutant reeler.", "journal": "Nature", "date": "1995", "authors": "D'Arcangelo G, Miao GG, Chen SC, Soares HD, Morgan JI, Curran T", "reference": { "type": "PubMed", "id": "7715726", "url": "https://pubmed.ncbi.nlm.nih.gov/7715726" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q60841-1", "protein_name": "Reelin", "gene_name": "Reln", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q60841", "url": "https://www.uniprot.org/uniprotkb/Q60841" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.7715726", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Reelin is a secreted glycoprotein recognized by the CR-50 monoclonal antibody.", "journal": "The Journal of neuroscience : the official journal of the Society for Neuroscience", "date": "1997-01-01", "authors": "D'Arcangelo G, Nakajima K, Miyata T, Ogawa M, Mikoshiba K, Curran T", "reference": { "type": "PubMed", "id": "8987733", "url": "https://pubmed.ncbi.nlm.nih.gov/8987733" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q60841-1", "protein_name": "Reelin", "gene_name": "Reln", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q60841", "url": "https://www.uniprot.org/uniprotkb/Q60841" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.8987733", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Reelin mRNA expression during mouse brain development.", "journal": "Eur. J. Neurosci.", "date": "1997", "authors": "Schiffmann S N, Bernier B, Goffinet A M", "reference": { "type": "PubMed", "id": "9182958", "url": "https://pubmed.ncbi.nlm.nih.gov/9182958" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q60841-1", "protein_name": "Reelin", "gene_name": "Reln", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q60841", "url": "https://www.uniprot.org/uniprotkb/Q60841" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.9182958", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Genomic organization of the mouse reelin gene.", "journal": "Genomics", "date": "1997", "authors": "Royaux I, Lambert de Rouvroit C, D'Arcangelo G, Demirov D, Goffinet A M", "reference": { "type": "PubMed", "id": "9417911", "url": "https://pubmed.ncbi.nlm.nih.gov/9417911" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q60841-1", "protein_name": "Reelin", "gene_name": "Reln", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q60841", "url": "https://www.uniprot.org/uniprotkb/Q60841" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.9417911", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Identification and characterization of a Na(+)-independent neutral amino acid transporter that associates with the 4F2 heavy chain and exhibits substrate selectivity for small neutral D- and L-amino acids.", "journal": "The Journal of biological chemistry", "date": "2000", "authors": "Fukasawa Y, Segawa H, Kim JY, Chairoungdua A, Kim DK, Matsuo H, Cha SH, Endou H, Kanai Y", "reference": { "type": "PubMed", "id": "10734121", "url": "https://pubmed.ncbi.nlm.nih.gov/10734121" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P10852-1", "protein_name": "Amino acid transporter heavy chain SLC3A2", "gene_name": "Slc3a2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P63115-1", "protein_name": "Asc-type amino acid transporter 1", "gene_name": "Slc7a10", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "P10852", "url": "https://www.uniprot.org/uniprotkb/P10852" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.10734121", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The 4F2hc/LAT1 complex transports L-DOPA across the blood-brain barrier.", "journal": "Brain research", "date": "2000-10-06", "authors": "Kageyama T, Nakamura M, Matsuo A, Yamasaki Y, Takakura Y, Hashida M, Kanai Y, Naito M, Tsuruo T, Minato N, Shimohama S", "reference": { "type": "PubMed", "id": "11011012", "url": "https://pubmed.ncbi.nlm.nih.gov/11011012" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P10852-1", "protein_name": "Amino acid transporter heavy chain SLC3A2", "gene_name": "Slc3a2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9Z127-1", "protein_name": "Large neutral amino acids transporter small subunit 1", "gene_name": "Slc7a5", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "P10852", "url": "https://www.uniprot.org/uniprotkb/P10852" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.11011012", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The targeted disruption of the CD98 gene results in embryonic lethality.", "journal": "Biochem. Biophys. Res. Commun.", "date": "2003", "authors": "Tsumura Hideki, Suzuki Noboru, Saito Hiromitsu, Kawano Mitsuo, Otake Seiichi, Kozuka Yuji, Komada Hiroshi, Tsurudome Masato, Ito Yasuhiko", "reference": { "type": "PubMed", "id": "12927796", "url": "https://pubmed.ncbi.nlm.nih.gov/12927796" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P10852-1", "protein_name": "Amino acid transporter heavy chain SLC3A2", "gene_name": "Slc3a2", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "P10852", "url": "https://www.uniprot.org/uniprotkb/P10852" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.12927796", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Structure, expression and regulation of the murine 4F2 heavy chain.", "journal": "Nucleic Acids Res.", "date": "1989", "authors": "Parmacek M S, Karpinski B A, Gottesdiener K M, Thompson C B, Leiden J M", "reference": { "type": "PubMed", "id": "2928113", "url": "https://pubmed.ncbi.nlm.nih.gov/2928113" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P10852-1", "protein_name": "Amino acid transporter heavy chain SLC3A2", "gene_name": "Slc3a2", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "P10852", "url": "https://www.uniprot.org/uniprotkb/P10852" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.2928113", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Structural differences between the ectodomains of murine and human CD98hc.", "journal": "Proteins", "date": "2019", "authors": "Deuschle FC, Schiefner A, Skerra A", "reference": { "type": "PubMed", "id": "30958588", "url": "https://pubmed.ncbi.nlm.nih.gov/30958588" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P10852-1", "protein_name": "Amino acid transporter heavy chain SLC3A2", "gene_name": "Slc3a2", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "P10852", "url": "https://www.uniprot.org/uniprotkb/P10852" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.30958588", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Metabolite Neu5Ac triggers SLC3A2 degradation promoting vascular endothelial ferroptosis and aggravates atherosclerosis progression in ApoE-/-mice.", "journal": "Theranostics", "date": "2023", "authors": "Xiang Peng, Chen Qingqiu, Chen Le, Lei Jin, Yuan Zhiyi, Hu Hui, Lu Yining, Wang Xianmin, Wang Tingting, Yu Ruihong, Zhang Wanping, Zhang Jun, Yu Chao, Ma Limei", "reference": { "type": "PubMed", "id": "37771765", "url": "https://pubmed.ncbi.nlm.nih.gov/37771765" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P10852-1", "protein_name": "Amino acid transporter heavy chain SLC3A2", "gene_name": "Slc3a2", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "P10852", "url": "https://www.uniprot.org/uniprotkb/P10852" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.37771765", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Rab4A-directed endosome traffic shapes pro-inflammatory mitochondrial metabolism in T cells via mitophagy, CD98 expression, and kynurenine-sensitive mTOR activation.", "journal": "Nature communications", "date": "2024-03-22", "authors": "Huang Nick, Winans Thomas, Wyman Brandon, Oaks Zachary, Faludi Tamas, Choudhary Gourav, Lai Zhi-Wei, Lewis Joshua, Beckford Miguel, Duarte Manuel, Krakko Daniel, Patel Akshay, Park Joy, Caza Tiffany, Sadeghzadeh Mahsa, Morel Laurence, Haas Mark, Middleton Frank, Banki Katalin, Perl Andras", "reference": { "type": "PubMed", "id": "38519468", "url": "https://pubmed.ncbi.nlm.nih.gov/38519468" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P10852-1", "protein_name": "Amino acid transporter heavy chain SLC3A2", "gene_name": "Slc3a2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P56371-1", "protein_name": "Ras-related protein Rab-4A", "gene_name": "Rab4a", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "P10852", "url": "https://www.uniprot.org/uniprotkb/P10852" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.38519468", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "4F2 (CD98) heavy chain is associated covalently with an amino acid transporter and controls intracellular trafficking and membrane topology of 4F2 heterodimer.", "journal": "The Journal of biological chemistry", "date": "1999", "authors": "Nakamura E, Sato M, Yang H, Miyagawa F, Harasaki M, Tomita K, Matsuoka S, Noma A, Iwai K, Minato N", "reference": { "type": "PubMed", "id": "9915839", "url": "https://pubmed.ncbi.nlm.nih.gov/9915839" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P10852-1", "protein_name": "Amino acid transporter heavy chain SLC3A2", "gene_name": "Slc3a2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9Z127-1", "protein_name": "Large neutral amino acids transporter small subunit 1", "gene_name": "Slc7a5", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "P10852", "url": "https://www.uniprot.org/uniprotkb/P10852" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "mutagenesis": [ { "start_pos": 103, "end_pos": 103, "sequence_org": "C", "sequence_mut": "S", "comment": "Loss of interchain disulfide bond. No effect on guidance of SLC7A5 to the plasma membrane.", "evidence": [ { "database": "UniProtKB", "id": "P10852", "url": "https://www.uniprot.org/uniprotkb/P10852" }, { "database": "PubMed", "id": "9915839", "url": "https://pubmed.ncbi.nlm.nih.gov/9915839" } ], "uniprot_canonical_ac": "P10852-1" } ], "record_id": "pubmed.9915839", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Molecular cloning of a major mRNA species in murine 3T3 adipocyte lineage. differentiation-dependent expression, regulation, and identification as semicarbazide-sensitive amine oxidase.", "journal": "J. Biol. Chem.", "date": "1999", "authors": "Moldes M, F\u00e8ve B, Pairault J", "reference": { "type": "PubMed", "id": "10092636", "url": "https://pubmed.ncbi.nlm.nih.gov/10092636" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O70423-1", "protein_name": "Amine oxidase [copper-containing] 3", "gene_name": "Aoc3", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "O70423", "url": "https://www.uniprot.org/uniprotkb/O70423" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.10092636", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Involvement of semicarbazide-sensitive amine oxidase-mediated deamination in atherogenesis in KKAy diabetic mice fed with high cholesterol diet.", "journal": "Diabetologia", "date": "2002", "authors": "Yu PH, Wang M, Deng YL, Fan H, Shira-Bock L", "reference": { "type": "PubMed", "id": "12242458", "url": "https://pubmed.ncbi.nlm.nih.gov/12242458" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O70423-1", "protein_name": "Amine oxidase [copper-containing] 3", "gene_name": "Aoc3", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "O70423", "url": "https://www.uniprot.org/uniprotkb/O70423" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.12242458", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Semicarbazide-sensitive amine oxidase (SSAO) gene expression in alloxan-induced diabetes in mice.", "journal": "Molecular medicine (Cambridge, Mass.)", "date": "2002", "authors": "Nordquist JE, Gokturk C, Oreland L", "reference": { "type": "PubMed", "id": "12606817", "url": "https://pubmed.ncbi.nlm.nih.gov/12606817" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O70423-1", "protein_name": "Amine oxidase [copper-containing] 3", "gene_name": "Aoc3", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "O70423", "url": "https://www.uniprot.org/uniprotkb/O70423" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.12606817", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Copper-dependent amino oxidase 3 governs selection of metabolic fuels in adipocytes.", "journal": "PLoS biology", "date": "2018", "authors": "Yang H, Ralle M, Wolfgang MJ, Dhawan N, Burkhead JL, Rodriguez S, Kaplan JH, Wong GW, Haughey N, Lutsenko S", "reference": { "type": "PubMed", "id": "30199530", "url": "https://pubmed.ncbi.nlm.nih.gov/30199530" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O70423-1", "protein_name": "Amine oxidase [copper-containing] 3", "gene_name": "Aoc3", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "O70423", "url": "https://www.uniprot.org/uniprotkb/O70423" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.30199530", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Comparison of Inhibitor and Substrate Selectivity between Rodent and Human Vascular Adhesion Protein-1.", "journal": "Mediators of inflammation", "date": "2020", "authors": "Kubota R, Reid MJ, Lieu KL, Orme M, Diamond C, Tulberg N, Henry SH", "reference": { "type": "PubMed", "id": "32410850", "url": "https://pubmed.ncbi.nlm.nih.gov/32410850" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O70423-1", "protein_name": "Amine oxidase [copper-containing] 3", "gene_name": "Aoc3", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "O08590-1", "protein_name": "Amine oxidase [copper-containing] 3", "gene_name": "Aoc3", "tax_name": "Rat" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "O70423", "url": "https://www.uniprot.org/uniprotkb/O70423" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.32410850", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Obesity of mice lacking VAP-1/SSAO by Aoc3 gene deletion is reproduced in mice expressing a mutated vascular adhesion protein-1 (VAP-1) devoid of amine oxidase activity.", "journal": "Journal of physiology and biochemistry", "date": "2021", "authors": "Jargaud V, Bour S, Terce F, Collet X, Valet P, Bouloumie A, Guillemot JC, Mauriege P, Jalkanen S, Stolen C, Salmi M, Smith DJ, Carpene C", "reference": { "type": "PubMed", "id": "32712883", "url": "https://pubmed.ncbi.nlm.nih.gov/32712883" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O70423-1", "protein_name": "Amine oxidase [copper-containing] 3", "gene_name": "Aoc3", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "O70423", "url": "https://www.uniprot.org/uniprotkb/O70423" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.32712883", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Amine oxidase copper-containing 3 aggravates cardiac remodelling by generating hydrogen peroxide after myocardial infarction.", "journal": "The Journal of pathology", "date": "2023-02-24", "authors": "Zhong Chongbin, Que Dongdong, Yu Wenjie, Chen Deshu, Wang Yuxi, Zhang Xuwei, Rui Bowen, Yang Yashu, Hong Qingqing, Huang Guanlin, Yang Li, Yan Jing, Yang Pingzhen", "reference": { "type": "PubMed", "id": "36825552", "url": "https://pubmed.ncbi.nlm.nih.gov/36825552" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O70423-1", "protein_name": "Amine oxidase [copper-containing] 3", "gene_name": "Aoc3", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "O70423", "url": "https://www.uniprot.org/uniprotkb/O70423" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.36825552", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] } ]