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Zhai Z, Shu H", "reference": { "type": "PubMed", "id": "11418127", "url": "https://pubmed.ncbi.nlm.nih.gov/11418127" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9UNS2-1", "protein_name": "COP9 signalosome complex subunit 3", "gene_name": "COPS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6K9-1", "protein_name": "NF-kappa-B essential modulator", "gene_name": "IKBKG", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9UNS2", "url": "https://www.uniprot.org/uniprotkb/Q9UNS2" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.11418127", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", 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], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Association of the mammalian proto-oncoprotein Int-6 with the three protein complexes eIF3, COP9 signalosome and 26S proteasome.", "journal": "FEBS Lett.", "date": "2002", "authors": "Hoareau Alves K, Bochard V, Rety S, Jalinot P", "reference": { "type": "PubMed", "id": "12220626", "url": "https://pubmed.ncbi.nlm.nih.gov/12220626" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9UNS2-1", "protein_name": "COP9 signalosome complex subunit 3", "gene_name": "COPS3", 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"count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Protein kinase CK2 and protein kinase D are associated with the COP9 signalosome.", "journal": "The EMBO journal", "date": "2003", "authors": "Uhle S, Medalia O, Waldron R, Dumdey R, Henklein P, Bech-Otschir D, Huang X, Berse M, Sperling J, Schade R, Dubiel W", "reference": { "type": "PubMed", "id": "12628923", "url": 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"table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Epidermal Growth Factor Receptor neddylation is regulated by a desmosomal-COP9 (Constitutive Photomorphogenesis 9) signalosome complex.", "journal": "eLife", "date": "2017", "authors": "Najor NA, Fitz GN, Koetsier JL, Godsel LM, Albrecht LV, Harmon R, Green KJ", "reference": { "type": "PubMed", "id": "28891468", "url": "https://pubmed.ncbi.nlm.nih.gov/28891468" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9UNS2-1", "protein_name": "COP9 signalosome complex subunit 3", "gene_name": "COPS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15843-1", "protein_name": "Ubiquitin-like protein NEDD8", "gene_name": "NEDD8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15924-1", "protein_name": "Desmoplakin", "gene_name": "DSP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02413-1", "protein_name": "Desmoglein-1", "gene_name": "DSG1", "tax_name": 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[] } ] }, { "title": "A novel protein complex involved in signal transduction possessing similarities to 26S proteasome subunits.", "journal": "FASEB journal : official publication of the Federation of American Societies for Experimental Biology", "date": "1998", "authors": "Seeger M, Kraft R, Ferrell K, Bech-Otschir D, Dumdey R, Schade R, Gordon C, Naumann M, Dubiel W", "reference": { "type": "PubMed", "id": "9535219", "url": "https://pubmed.ncbi.nlm.nih.gov/9535219" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9UNS2-1", "protein_name": "COP9 signalosome complex subunit 3", "gene_name": "COPS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBW8-1", "protein_name": "COP9 signalosome complex subunit 7a", "gene_name": "COPS7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99627-1", "protein_name": "COP9 signalosome complex subunit 8", "gene_name": "COPS8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61201-1", "protein_name": "COP9 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"count": 0 } ], "sort_fields": [] } ] }, { "title": "Arf GTPase-activating protein ASAP1 interacts with Rab11 effector FIP3 and regulates pericentrosomal localization of transferrin receptor-positive recycling endosome.", "journal": "Molecular biology of the cell", "date": "2008", "authors": "Inoue H, Ha VL, Prekeris R, Randazzo PA", "reference": { "type": "PubMed", "id": "18685082", "url": "https://pubmed.ncbi.nlm.nih.gov/18685082" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9ULH1-1", "protein_name": "Arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 1", "gene_name": "ASAP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00471-1", "protein_name": "Exocyst complex component 5", "gene_name": "EXOC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8CHD8-1", "protein_name": "Rab11 family-interacting protein 3", "gene_name": "Rab11fip3", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9QWY8-1", "protein_name": "Arf-GAP 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"tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYI6-1", "protein_name": "Exocyst complex component 8", "gene_name": "EXOC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A65-1", "protein_name": "Exocyst complex component 4", "gene_name": "EXOC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P98161-1", "protein_name": "Polycystin-1", "gene_name": "PKD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60645-1", "protein_name": "Exocyst complex component 3", "gene_name": "EXOC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPT5-3", "protein_name": "Exocyst complex component 7", "gene_name": "EXOC7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NV70-1", "protein_name": "Exocyst complex component 1", "gene_name": "EXOC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TAG9-1", "protein_name": "Exocyst complex component 6", "gene_name": "EXOC6", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": 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"tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZW61-1", "protein_name": "Chaperonin-containing T-complex member BBS12", "gene_name": "BBS12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYI6-1", "protein_name": "Exocyst complex component 8", "gene_name": "EXOC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "A8MTZ0-1", "protein_name": "BBSome-interacting protein 1", "gene_name": "BBIP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78371-1", "protein_name": "T-complex protein 1 subunit beta", "gene_name": "CCT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPJ1-1", "protein_name": "Molecular chaperone MKKS", "gene_name": "MKKS", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A65-1", "protein_name": "Exocyst complex component 4", "gene_name": "EXOC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P48643-1", "protein_name": "T-complex protein 1 subunit epsilon", "gene_name": "CCT5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P98161-1", 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Crosstalk of Arf and Rab GTPases en route to cilia.", "journal": "Small GTPases", "date": "2013", "authors": "Deretic D", "reference": { "type": "PubMed", "id": "23567335", "url": "https://pubmed.ncbi.nlm.nih.gov/23567335" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9ULH1-1", "protein_name": "Arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 1", "gene_name": "ASAP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00471-1", "protein_name": "Exocyst complex component 5", "gene_name": "EXOC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96KP1-1", "protein_name": "Exocyst complex component 2", "gene_name": "EXOC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13563-1", "protein_name": "Polycystin-2", "gene_name": "PKD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62491-1", "protein_name": "Ras-related protein 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"uniprot_canonical_ac": "Q92538-4", "protein_name": "Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1", "gene_name": "GBF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16280-1", "protein_name": "Cyclic nucleotide-gated channel alpha-2", "gene_name": "CNGA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYI6-1", "protein_name": "Exocyst complex component 8", "gene_name": "EXOC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A65-1", "protein_name": "Exocyst complex component 4", "gene_name": "EXOC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P98161-1", "protein_name": "Polycystin-1", "gene_name": "PKD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60645-1", "protein_name": "Exocyst complex component 3", "gene_name": "EXOC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPT5-3", "protein_name": "Exocyst complex component 7", "gene_name": "EXOC7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NV70-1", 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[] } ] }, { "title": "A single EFEMP1 mutation associated with both Malattia Leventinese and Doyne honeycomb retinal dystrophy.", "journal": "Nature genetics", "date": "1999", "authors": "Stone EM, Lotery AJ, Munier FL, Heon E, Piguet B, Guymer RH, Vandenburgh K, Cousin P, Nishimura D, Swiderski RE, Silvestri G, Mackey DA, Hageman GS, Bird AC, Sheffield VC, Schorderet DF", "reference": { "type": "PubMed", "id": "10369267", "url": "https://pubmed.ncbi.nlm.nih.gov/10369267" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q12805-1", "protein_name": "EGF-containing fibulin-like extracellular matrix protein 1", "gene_name": "EFEMP1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q12805", "url": "https://www.uniprot.org/uniprotkb/Q12805" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.10369267", "abstract": 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"n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Tissue inhibitor of metalloproteinases-3 (TIMP-3) is a binding partner of epithelial growth factor-containing fibulin-like extracellular matrix protein 1 (EFEMP1). Implications for macular degenerations.", "journal": "J. Biol. Chem.", "date": "2004", "authors": "Klenotic Philip A, Munier Francis L, Marmorstein Lihua Y, Anand-Apte Bela", "reference": { "type": "PubMed", "id": "15123717", "url": "https://pubmed.ncbi.nlm.nih.gov/15123717" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q12805-1", "protein_name": "EGF-containing fibulin-like extracellular matrix protein 1", "gene_name": "EFEMP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35625-1", "protein_name": "Metalloproteinase inhibitor 3", "gene_name": "TIMP3", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q12805", "url": "https://www.uniprot.org/uniprotkb/Q12805" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.15123717", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Role of cytochrome c and dATP/ATP hydrolysis in Apaf-1-mediated caspase-9 activation and apoptosis.", "journal": "The EMBO journal", "date": "1999", "authors": "Hu Y, Benedict MA, Ding L, Nunez G", "reference": { "type": "PubMed", "id": "10393175", "url": "https://pubmed.ncbi.nlm.nih.gov/10393175" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P29466-1", "protein_name": "Caspase-1", "gene_name": "CASP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15350-1", "protein_name": "Tumor protein p73", "gene_name": "TP73", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H3D4-1", "protein_name": "Tumor protein 63", "gene_name": "TP63", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92851-1", "protein_name": "Caspase-10", "gene_name": "CASP10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42575-1", "protein_name": "Caspase-2", "gene_name": 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Biochem. Biophys.", "date": "1992", "authors": "Kronheim S R, Mumma A, Greenstreet T, Glackin P J, Van Ness K, March C J, Black R A", "reference": { "type": "PubMed", "id": "1321594", "url": "https://pubmed.ncbi.nlm.nih.gov/1321594" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P29466-1", "protein_name": "Caspase-1", "gene_name": "CASP1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P29466", "url": "https://www.uniprot.org/uniprotkb/P29466" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.1321594", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": 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[] } ] }, { "title": "Molecular cloning of the interleukin-1 beta converting enzyme.", "journal": "Science", "date": "1992", "authors": "Cerretti DP, Kozlosky CJ, Mosley B, Nelson N, Van Ness K, Greenstreet TA, March CJ, Kronheim SR, Druck T, Cannizzaro LA, et al.", "reference": { "type": "PubMed", "id": "1373520", "url": "https://pubmed.ncbi.nlm.nih.gov/1373520" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P29466-1", "protein_name": "Caspase-1", "gene_name": "CASP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15350-1", "protein_name": "Tumor protein p73", "gene_name": "TP73", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H3D4-1", "protein_name": "Tumor protein 63", "gene_name": "TP63", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92851-1", "protein_name": "Caspase-10", "gene_name": "CASP10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42575-1", "protein_name": "Caspase-2", "gene_name": "CASP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPP4-1", "protein_name": "NLR family CARD domain-containing protein 4", "gene_name": "NLRC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55212-1", "protein_name": "Caspase-6", "gene_name": "CASP6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HB75-1", "protein_name": "p53-induced death domain-containing protein 1", "gene_name": "PIDD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78560-1", "protein_name": "Death domain-containing protein CRADD", "gene_name": "CRADD", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14727-1", "protein_name": "Apoptotic protease-activating factor 1", "gene_name": "APAF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13315-1", "protein_name": "Serine-protein kinase ATM", "gene_name": "ATM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04637-1", "protein_name": "Cellular tumor antigen p53", "gene_name": "TP53", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, 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activation of caspase-2 in response to genotoxic stress.", "journal": "Science (New York, N.Y.)", "date": "2004", "authors": "Tinel A, Tschopp J", "reference": { "type": "PubMed", "id": "15073321", "url": "https://pubmed.ncbi.nlm.nih.gov/15073321" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P29466-1", "protein_name": "Caspase-1", "gene_name": "CASP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15350-1", "protein_name": "Tumor protein p73", "gene_name": "TP73", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H3D4-1", "protein_name": "Tumor protein 63", "gene_name": "TP63", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92851-1", "protein_name": "Caspase-10", "gene_name": "CASP10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42575-1", "protein_name": "Caspase-2", "gene_name": "CASP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPP4-1", "protein_name": "NLR family CARD domain-containing protein 4", "gene_name": "NLRC4", 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binding.", "journal": "Structure", "date": "2004", "authors": "Romanowski Michael J, Scheer Justin M, O'Brien Tom, McDowell Robert S", "reference": { "type": "PubMed", "id": "15296730", "url": "https://pubmed.ncbi.nlm.nih.gov/15296730" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P29466-1", "protein_name": "Caspase-1", "gene_name": "CASP1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P29466", "url": "https://www.uniprot.org/uniprotkb/P29466" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.15296730", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", 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Biol. Chem.", "date": "2004", "authors": "Lamkanfi M, Denecker G, Kalai M, D'hondt K, Meeus A, Declercq W, Saelens X, Vandenabeele P", "reference": { "type": "PubMed", "id": "15383541", "url": "https://pubmed.ncbi.nlm.nih.gov/15383541" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P29466-1", "protein_name": "Caspase-1", "gene_name": "CASP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5XLA6-1", "protein_name": "Putative caspase recruitment domain-containing protein 17P", "gene_name": "CARD17P", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P29466", "url": "https://www.uniprot.org/uniprotkb/P29466" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.15383541", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Caspase-1zeta, a new splice variant of the caspase-1 gene.", "journal": "Genomics", "date": "2004", "authors": "Feng Q, Li P, Leung PC, Auersperg N", "reference": { "type": "PubMed", "id": "15498465", "url": "https://pubmed.ncbi.nlm.nih.gov/15498465" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P29466-1", "protein_name": "Caspase-1", "gene_name": "CASP1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P29466", "url": "https://www.uniprot.org/uniprotkb/P29466" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 285, "end_pos": 285, "sequence_org": "C", "sequence_mut": "A", "comment": "Loss of protease activity. 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{ "uniprot_canonical_ac": "P10749-1", "protein_name": "Interleukin-1 beta", "gene_name": "Il1b", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "O15350-1", "protein_name": "Tumor protein p73", "gene_name": "TP73", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H3D4-1", "protein_name": "Tumor protein 63", "gene_name": "TP63", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92851-1", "protein_name": "Caspase-10", "gene_name": "CASP10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42575-1", "protein_name": "Caspase-2", "gene_name": "CASP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPP4-1", "protein_name": "NLR family CARD domain-containing protein 4", "gene_name": "NLRC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55212-1", "protein_name": "Caspase-6", "gene_name": "CASP6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HB75-1", "protein_name": "p53-induced death domain-containing protein 1", "gene_name": "PIDD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78560-1", "protein_name": "Death domain-containing protein CRADD", "gene_name": "CRADD", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14727-1", "protein_name": "Apoptotic protease-activating factor 1", "gene_name": "APAF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13315-1", "protein_name": "Serine-protein kinase ATM", "gene_name": "ATM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04637-1", "protein_name": "Cellular tumor antigen p53", "gene_name": "TP53", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P29466", "url": "https://www.uniprot.org/uniprotkb/P29466" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.17284521", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 13 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { 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Microbiol.", "date": "2010", "authors": "Mishra Bibhuti B, Moura-Alves Pedro, Sonawane Avinash, Hacohen Nir, Griffiths Gareth, Moita Luis F, Anes Elsa", "reference": { "type": "PubMed", "id": "20148899", "url": "https://pubmed.ncbi.nlm.nih.gov/20148899" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P29466-1", "protein_name": "Caspase-1", "gene_name": "CASP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01584-1", "protein_name": "Interleukin-1 beta", "gene_name": "IL1B", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P29466", "url": "https://www.uniprot.org/uniprotkb/P29466" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.20148899", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Cleavage of sphingosine kinase 2 by caspase-1 provokes its release from apoptotic cells.", "journal": "Blood", "date": "2010", "authors": "Weigert A, Cremer S, Schmidt MV, von Knethen A, Angioni C, Geisslinger G, Brune B", "reference": { "type": "PubMed", "id": "20197547", "url": "https://pubmed.ncbi.nlm.nih.gov/20197547" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P29466-1", "protein_name": "Caspase-1", "gene_name": "CASP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NRA0-1", "protein_name": "Sphingosine kinase 2", "gene_name": "SPHK2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P29466", "url": "https://www.uniprot.org/uniprotkb/P29466" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 285, "end_pos": 285, "sequence_org": "C", "sequence_mut": "A", "comment": "Loss of protease activity. 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"count": 0 } ], "sort_fields": [] } ] }, { "title": "Inflammasome-activated caspase 7 cleaves PARP1 to enhance the expression of a subset of NF-kappaB target genes.", "journal": "Molecular cell", "date": "2012", "authors": "Erener S, Petrilli V, Kassner I, Minotti R, Castillo R, Santoro R, Hassa PO, Tschopp J, Hottiger MO", "reference": { "type": "PubMed", "id": "22464733", "url": "https://pubmed.ncbi.nlm.nih.gov/22464733" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P29466-1", "protein_name": "Caspase-1", "gene_name": "CASP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11103-1", "protein_name": "Poly [ADP-ribose] polymerase 1", "gene_name": "Parp1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P97864-1", "protein_name": "Caspase-7", "gene_name": "Casp7", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P29452-1", "protein_name": "Caspase-1", "gene_name": "Casp1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P55210-1", 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[] } ] }, { "title": "PIDD death-domain phosphorylation by ATM controls prodeath versus prosurvival PIDDosome signaling.", "journal": "Molecular cell", "date": "2012", "authors": "Ando K, Kernan JL, Liu PH, Sanda T, Logette E, Tschopp J, Look AT, Wang J, Bouchier-Hayes L, Sidi S", "reference": { "type": "PubMed", "id": "22854598", "url": "https://pubmed.ncbi.nlm.nih.gov/22854598" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P29466-1", "protein_name": "Caspase-1", "gene_name": "CASP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15350-1", "protein_name": "Tumor protein p73", "gene_name": "TP73", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H3D4-1", "protein_name": "Tumor protein 63", "gene_name": "TP63", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92851-1", "protein_name": "Caspase-10", "gene_name": "CASP10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42575-1", "protein_name": "Caspase-2", "gene_name": "CASP2", "tax_name": 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"taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P29466", "url": "https://www.uniprot.org/uniprotkb/P29466" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 788, "end_pos": 788, "kinase_uniprot_canonical_ac": "Q13315-1", "kinase_gene_name": "ATM", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9HB75", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9HB75" }, { "database": "PubMed", "id": "22854598", "url": "https://pubmed.ncbi.nlm.nih.gov/22854598" } ], "site_lbl": "Thr788", "uniprot_canonical_ac": "Q9HB75-1" }, { "start_pos": 788, "end_pos": 788, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9HB75", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9HB75" }, { "database": "PubMed", "id": "22854598", "url": 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"title": "Caspase-1 is a novel target of p63 in tumor suppression.", "journal": "Cell death & disease", "date": "2013", "authors": "Celardo I, Grespi F, Antonov A, Bernassola F, Garabadgiu AV, Melino G, Amelio I", "reference": { "type": "PubMed", "id": "23703390", "url": "https://pubmed.ncbi.nlm.nih.gov/23703390" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P29466-1", "protein_name": "Caspase-1", "gene_name": "CASP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15350-1", "protein_name": "Tumor protein p73", "gene_name": "TP73", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H3D4-1", "protein_name": "Tumor protein 63", "gene_name": "TP63", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92851-1", "protein_name": "Caspase-10", "gene_name": "CASP10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42575-1", "protein_name": "Caspase-2", "gene_name": "CASP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPP4-1", "protein_name": "NLR family CARD domain-containing protein 4", "gene_name": "NLRC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55212-1", "protein_name": "Caspase-6", "gene_name": "CASP6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HB75-1", "protein_name": "p53-induced death domain-containing protein 1", "gene_name": "PIDD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78560-1", "protein_name": "Death domain-containing protein CRADD", "gene_name": "CRADD", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14727-1", "protein_name": "Apoptotic protease-activating factor 1", "gene_name": "APAF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13315-1", "protein_name": "Serine-protein kinase ATM", "gene_name": "ATM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04637-1", "protein_name": "Cellular tumor antigen p53", "gene_name": "TP53", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P29466", "url": "https://www.uniprot.org/uniprotkb/P29466" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.23703390", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 12 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] } ]