[ { "title": "Human lipoprotein lipase: relationship of activity, heparin affinity, and conformation as studied with monoclonal antibodies.", "journal": "Journal of lipid research", "date": "1992", "authors": "Peterson J, Fujimoto WY, Brunzell JD", "reference": { "type": "PubMed", "id": "1279089", "url": "https://pubmed.ncbi.nlm.nih.gov/1279089" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P98160-1", "protein_name": "Basement membrane-specific heparan sulfate proteoglycan core protein", "gene_name": "HSPG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02753-1", "protein_name": "Retinol-binding protein 4", "gene_name": "RBP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75056-1", "protein_name": "Syndecan-3", "gene_name": "SDC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00468-1", "protein_name": "Agrin", "gene_name": "AGRN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17516-1", "protein_name": "Aldo-keto reductase family 1 member C4", "gene_name": "AKR1C4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04114-1", "protein_name": "Apolipoprotein B-100", "gene_name": "APOB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07954-1", "protein_name": "Prolow-density lipoprotein receptor-related protein 1", "gene_name": "LRP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95445-1", "protein_name": "Apolipoprotein M", "gene_name": "APOM", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q04828-1", "protein_name": "Aldo-keto reductase family 1 member C1", "gene_name": "AKR1C1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02655-1", "protein_name": "Apolipoprotein C-II", "gene_name": "APOC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42330-1", "protein_name": "Aldo-keto reductase family 1 member C3", "gene_name": "AKR1C3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04118-1", "protein_name": "Colipase", "gene_name": "CLPS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51654-1", "protein_name": "Glypican-3", "gene_name": "GPC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95237-1", "protein_name": "Lecithin retinol acyltransferase", "gene_name": "LRAT", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09455-1", "protein_name": "Retinol-binding protein 1", "gene_name": "RBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TC12-1", "protein_name": "Retinol dehydrogenase 11", "gene_name": "RDH11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50120-1", "protein_name": "Retinol-binding protein 2", "gene_name": "RBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6NUM9-1", "protein_name": "All-trans-retinol 13,14-reductase", "gene_name": "RETSAT", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18827-1", "protein_name": "Syndecan-1", "gene_name": "SDC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02656-1", "protein_name": "Apolipoprotein C-III", "gene_name": "APOC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02649-1", "protein_name": "Apolipoprotein E", "gene_name": "APOE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HAY6-1", "protein_name": "Beta,beta-carotene 15,15'-dioxygenase", "gene_name": "BCO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02766-1", "protein_name": "Transthyretin", "gene_name": "TTR", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31431-1", "protein_name": "Syndecan-4", "gene_name": "SDC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16233-1", "protein_name": "Pancreatic triacylglycerol lipase", "gene_name": "PNLIP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y625-1", "protein_name": "Glypican-6", "gene_name": "GPC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N158-1", "protein_name": "Glypican-2", "gene_name": "GPC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y561-1", "protein_name": "Low-density lipoprotein receptor-related protein 12", "gene_name": "LRP12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P98164-1", "protein_name": "Low-density lipoprotein receptor-related protein 2", "gene_name": "LRP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02652-1", "protein_name": "Apolipoprotein A-II", "gene_name": "APOA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14114-1", "protein_name": "Low-density lipoprotein receptor-related protein 8", "gene_name": "LRP8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06727-1", "protein_name": "Apolipoprotein A-IV", "gene_name": "APOA4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6Q788-1", "protein_name": "Apolipoprotein A-V", "gene_name": "APOA5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01130-1", "protein_name": "Low-density lipoprotein receptor", "gene_name": "LDLR", "tax_name": "Human" }, { "uniprot_canonical_ac": "P34741-1", "protein_name": "Syndecan-2", "gene_name": "SDC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78333-1", "protein_name": "Glypican-5", "gene_name": "GPC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35052-1", "protein_name": "Glypican-1", "gene_name": "GPC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P1J6-1", "protein_name": "Phospholipase B1, membrane-associated", "gene_name": "PLB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BYV7-1", "protein_name": "Carotenoid-cleaving dioxygenase, mitochondrial", "gene_name": "BCO2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75487-1", "protein_name": "Glypican-4", "gene_name": "GPC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IV16-1", "protein_name": "Glycosylphosphatidylinositol-anchored high density lipoprotein-binding protein 1", "gene_name": "GPIHBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06858-1", "protein_name": "Lipoprotein lipase", "gene_name": "LPL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z4F1-1", "protein_name": "Low-density lipoprotein receptor-related protein 10", "gene_name": "LRP10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02647-1", "protein_name": "Apolipoprotein A-I", "gene_name": "APOA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60218-1", "protein_name": "Aldo-keto reductase family 1 member B10", "gene_name": "AKR1B10", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P98160", "url": "https://www.uniprot.org/uniprotkb/P98160" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.1279089", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 45 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Cell adhesion to fibrillin-1 molecules and microfibrils is mediated by alpha 5 beta 1 and alpha v beta 3 integrins.", "journal": "The Journal of biological chemistry", "date": "2003", "authors": "Bax DV, Bernard SE, Lomas A, Morgan A, Humphries J, Shuttleworth CA, Humphries MJ, Kielty CM", "reference": { "type": "PubMed", "id": "12807887", "url": "https://pubmed.ncbi.nlm.nih.gov/12807887" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P98160-1", "protein_name": "Basement membrane-specific heparan sulfate proteoglycan core protein", "gene_name": "HSPG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51884-1", "protein_name": "Lumican", "gene_name": "LUM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02452-1", "protein_name": "Collagen alpha-1(I) chain", "gene_name": "COL1A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18084-1", "protein_name": "Integrin beta-5", "gene_name": "ITGB5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02671-1", "protein_name": "Fibrinogen alpha chain", "gene_name": "FGA", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00468-1", "protein_name": "Agrin", "gene_name": "AGRN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02751-15", "protein_name": "Fibronectin", "gene_name": "FN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08722-1", "protein_name": "Leukocyte surface antigen CD47", "gene_name": "CD47", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53420-1", "protein_name": "Collagen alpha-4(IV) chain", "gene_name": "COL4A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02679-1", "protein_name": "Fibrinogen gamma chain", "gene_name": "FGG", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86Y22-1", "protein_name": "Collagen alpha-1(XXIII) chain", "gene_name": "COL23A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20701-1", "protein_name": "Integrin alpha-L", "gene_name": "ITGAL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05362-1", "protein_name": "Intercellular adhesion molecule 1", "gene_name": "ICAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y624-1", "protein_name": "Junctional adhesion molecule A", "gene_name": "F11R", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35613-1", "protein_name": "Basigin", "gene_name": "BSG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P21815-1", "protein_name": "Integrin-binding sialoprotein", "gene_name": "IBSP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49747-1", "protein_name": "Cartilage oligomeric matrix protein", "gene_name": "COMP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04275-1", "protein_name": "von Willebrand factor", "gene_name": "VWF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07996-1", "protein_name": "Thrombospondin-1", "gene_name": "THBS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16070-1", "protein_name": "CD44 antigen", "gene_name": "CD44", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10451-1", "protein_name": "Osteopontin", "gene_name": "SPP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12110-1", "protein_name": "Collagen alpha-2(VI) chain", "gene_name": "COL6A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14031-1", "protein_name": "Collagen alpha-6(IV) chain", "gene_name": "COL4A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20908-1", "protein_name": "Collagen alpha-1(V) chain", "gene_name": "COL5A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02462-1", "protein_name": "Collagen alpha-1(IV) chain", "gene_name": "COL4A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27658-1", "protein_name": "Collagen alpha-1(VIII) chain", "gene_name": "COL8A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08572-1", "protein_name": "Collagen alpha-2(IV) chain", "gene_name": "COL4A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25067-1", "protein_name": "Collagen alpha-2(VIII) chain", "gene_name": "COL8A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20849-1", "protein_name": "Collagen alpha-1(IX) chain", "gene_name": "COL9A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25940-1", "protein_name": "Collagen alpha-3(V) chain", "gene_name": "COL5A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01955-1", "protein_name": "Collagen alpha-3(IV) chain", "gene_name": "COL4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16284-1", "protein_name": "Platelet endothelial cell adhesion molecule", "gene_name": "PECAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35968-1", "protein_name": "Vascular endothelial growth factor receptor 2", "gene_name": "KDR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13683-1", "protein_name": "Integrin alpha-7", "gene_name": "ITGA7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18564-1", "protein_name": "Integrin beta-6", "gene_name": "ITGB6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11215-1", "protein_name": "Integrin alpha-M", "gene_name": "ITGAM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26006-2", "protein_name": "Integrin alpha-3", "gene_name": "ITGA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08514-1", "protein_name": "Integrin alpha-IIb", "gene_name": "ITGA2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38570-1", "protein_name": "Integrin alpha-E", "gene_name": "ITGAE", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75578-1", "protein_name": "Integrin alpha-10", "gene_name": "ITGA10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06756-1", "protein_name": "Integrin alpha-V", "gene_name": "ITGAV", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53708-1", "protein_name": "Integrin alpha-8", "gene_name": "ITGA8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13349-1", "protein_name": "Integrin alpha-D", "gene_name": "ITGAD", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKX5-1", "protein_name": "Integrin alpha-11", "gene_name": "ITGA11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08648-1", "protein_name": "Integrin alpha-5", "gene_name": "ITGA5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13612-1", "protein_name": "Integrin alpha-4", "gene_name": "ITGA4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05556-1", "protein_name": "Integrin beta-1", "gene_name": "ITGB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02461-1", "protein_name": "Collagen alpha-1(III) chain", "gene_name": "COL3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07092-1", "protein_name": "Collagen alpha-1(XVI) chain", "gene_name": "COL16A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29400-1", "protein_name": "Collagen alpha-5(IV) chain", "gene_name": "COL4A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14055-1", "protein_name": "Collagen alpha-2(IX) chain", "gene_name": "COL9A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "A8TX70-1", "protein_name": "Collagen alpha-5(VI) chain", "gene_name": "COL6A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05997-1", "protein_name": "Collagen alpha-2(V) chain", "gene_name": "COL5A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "A6NMZ7-1", "protein_name": "Collagen alpha-6(VI) chain", "gene_name": "COL6A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12111-1", "protein_name": "Collagen alpha-3(VI) chain", "gene_name": "COL6A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5TAT6-1", "protein_name": "Collagen alpha-1(XIII) chain", "gene_name": "COL13A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08123-1", "protein_name": "Collagen alpha-2(I) chain", "gene_name": "COL1A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12109-1", "protein_name": "Collagen alpha-1(VI) chain", "gene_name": "COL6A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02458-2", "protein_name": "Collagen alpha-1(II) chain", "gene_name": "COL2A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02388-1", "protein_name": "Collagen alpha-1(VII) chain", "gene_name": "COL7A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14050-1", "protein_name": "Collagen alpha-3(IX) chain", "gene_name": "COL9A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02675-1", "protein_name": "Fibrinogen beta chain", "gene_name": "FGB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26010-1", "protein_name": "Integrin beta-7", "gene_name": "ITGB7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05106-1", "protein_name": "Integrin beta-3", "gene_name": "ITGB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q03692-1", "protein_name": "Collagen alpha-1(X) chain", "gene_name": "COL10A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12830-1", "protein_name": "Cadherin-1", "gene_name": "CDH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04004-1", "protein_name": "Vitronectin", "gene_name": "VTN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23229-1", "protein_name": "Integrin alpha-6", "gene_name": "ITGA6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14773-1", "protein_name": "Intercellular adhesion molecule 4", "gene_name": "ICAM4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13797-1", "protein_name": "Integrin alpha-9", "gene_name": "ITGA9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32942-1", "protein_name": "Intercellular adhesion molecule 3", "gene_name": "ICAM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UMF0-1", "protein_name": "Intercellular adhesion molecule 5", "gene_name": "ICAM5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20702-1", "protein_name": "Integrin alpha-X", "gene_name": "ITGAX", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BX67-1", "protein_name": "Junctional adhesion molecule C", "gene_name": "JAM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17301-1", "protein_name": "Integrin alpha-2", "gene_name": "ITGA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57087-1", "protein_name": "Junctional adhesion molecule B", "gene_name": "JAM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26012-1", "protein_name": "Integrin beta-8", "gene_name": "ITGB8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P56199-1", "protein_name": "Integrin alpha-1", "gene_name": "ITGA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19320-1", "protein_name": "Vascular cell adhesion protein 1", "gene_name": "VCAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35555-1", "protein_name": "Fibrillin-1", "gene_name": "FBN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13598-1", "protein_name": "Intercellular adhesion molecule 2", "gene_name": "ICAM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24821-1", "protein_name": "Tenascin", "gene_name": "TNC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39060-3", "protein_name": "Collagen alpha-1(XVIII) chain", "gene_name": "COL18A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05107-1", "protein_name": "Integrin beta-2", "gene_name": "ITGB2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P98160", "url": "https://www.uniprot.org/uniprotkb/P98160" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 1542, "end_pos": 1542, "sequence_org": "G", "sequence_mut": "D", "comment": "Loss of integrin-mediated cell adhesion.", "evidence": [ { "database": "UniProtKB", "id": "P35555", "url": "https://www.uniprot.org/uniprotkb/P35555" }, { "database": "PubMed", "id": "12807887", "url": "https://pubmed.ncbi.nlm.nih.gov/12807887" } ], "uniprot_canonical_ac": "P35555-1" } ], "record_id": "pubmed.12807887", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 84 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The calpain system.", "journal": "Physiological reviews", "date": "2003", "authors": "Goll DE, Thompson VF, Li H, Wei W, Cong J", "reference": { "type": "PubMed", "id": "12843408", "url": "https://pubmed.ncbi.nlm.nih.gov/12843408" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P98160-1", "protein_name": "Basement membrane-specific heparan sulfate proteoglycan core protein", "gene_name": "HSPG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15502-3", "protein_name": "Elastin", "gene_name": "ELN", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43897-1", "protein_name": "Tolloid-like protein 1", "gene_name": "TLL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13444-1", "protein_name": "Disintegrin and metalloproteinase domain-containing protein 15", "gene_name": "ADAM15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92542-1", "protein_name": "Nicastrin", "gene_name": "NCSTN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02751-15", "protein_name": "Fibronectin", "gene_name": "FN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04632-1", "protein_name": "Calpain small subunit 1", "gene_name": "CAPNS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08246-1", "protein_name": "Neutrophil elastase", "gene_name": "ELANE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92743-1", "protein_name": "Serine protease HTRA1", "gene_name": "HTRA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBM4-1", "protein_name": "Opticin", "gene_name": "OPTC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16112-1", "protein_name": "Aggrecan core protein", "gene_name": "ACAN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P03956-1", "protein_name": "Interstitial collagenase", "gene_name": "MMP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39900-1", "protein_name": "Macrophage metalloelastase", "gene_name": "MMP12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14543-1", "protein_name": "Nidogen-1", "gene_name": "NID1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWY4-1", "protein_name": "Signal peptide, CUB and EGF-like domain-containing protein 1", "gene_name": "SCUBE1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35613-1", "protein_name": "Basigin", "gene_name": "BSG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50281-1", "protein_name": "Matrix metalloproteinase-14", "gene_name": "MMP14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TE57-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 16", "gene_name": "ADAMTS16", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNA0-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 5", "gene_name": "ADAMTS5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6MZZ7-1", "protein_name": "Calpain-13", "gene_name": "CAPN13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07711-1", "protein_name": "Procathepsin L", "gene_name": "CTSL", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75808-1", "protein_name": "Calpain-15", "gene_name": "CAPN15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16070-1", "protein_name": "CD44 antigen", "gene_name": "CD44", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08311-1", "protein_name": "Cathepsin G", "gene_name": "CTSG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10451-1", "protein_name": "Osteopontin", "gene_name": "SPP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25774-1", "protein_name": "Cathepsin S", "gene_name": "CTSS", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15484-1", "protein_name": "Calpain-5", "gene_name": "CAPN5", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60911-1", "protein_name": "Cathepsin L2", "gene_name": "CTSV", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07942-1", "protein_name": "Laminin subunit beta-1", "gene_name": "LAMB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49862-1", "protein_name": "Kallikrein-7", "gene_name": "KLK7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13753-1", "protein_name": "Laminin subunit gamma-2", "gene_name": "LAMC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11047-1", "protein_name": "Laminin subunit gamma-1", "gene_name": "LAMC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P45452-1", "protein_name": "Collagenase 3", "gene_name": "MMP13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24347-1", "protein_name": "Stromelysin-3", "gene_name": "MMP11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09238-1", "protein_name": "Stromelysin-2", "gene_name": "MMP10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51511-1", "protein_name": "Matrix metalloproteinase-15", "gene_name": "MMP15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96L46-1", "protein_name": "Calpain small subunit 2", "gene_name": "CAPNS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13751-1", "protein_name": "Laminin subunit beta-3", "gene_name": "LAMB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16787-2", "protein_name": "Laminin subunit alpha-3", "gene_name": "LAMA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15230-1", "protein_name": "Laminin subunit alpha-5", "gene_name": "LAMA5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09237-1", "protein_name": "Matrilysin", "gene_name": "MMP7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6L7-1", "protein_name": "Tolloid-like protein 2", "gene_name": "TLL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42574-1", "protein_name": "Caspase-3", "gene_name": "CASP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00747-1", "protein_name": "Plasminogen", "gene_name": "PLG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14780-1", "protein_name": "Matrix metalloproteinase-9", "gene_name": "MMP9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07585-1", "protein_name": "Decorin", "gene_name": "DCN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6W3-1", "protein_name": "Calpain-7", "gene_name": "CAPN7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13497-1", "protein_name": "Bone morphogenetic protein 1", "gene_name": "BMP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "A6NHC0-1", "protein_name": "Calpain-8", "gene_name": "CAPN8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14815-1", "protein_name": "Calpain-9", "gene_name": "CAPN9", "tax_name": "Human" }, { "uniprot_canonical_ac": "A8MX76-1", "protein_name": "Calpain-14", "gene_name": "CAPN14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12830-1", "protein_name": "Cadherin-1", "gene_name": "CDH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZSI9-1", "protein_name": "Calpain-12", "gene_name": "CAPN12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17655-1", "protein_name": "Calpain-2 catalytic subunit", "gene_name": "CAPN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6Q1-1", "protein_name": "Calpain-6", "gene_name": "CAPN6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08253-1", "protein_name": "72 kDa type IV collagenase", "gene_name": "MMP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IX30-1", "protein_name": "Signal peptide, CUB and EGF-like domain-containing protein 3", "gene_name": "SCUBE3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96GW7-1", "protein_name": "Brevican core protein", "gene_name": "BCAN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TE60-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 18", "gene_name": "ADAMTS18", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75173-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 4", "gene_name": "ADAMTS4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P2N4-3", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 9", "gene_name": "ADAMTS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHI8-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 1", "gene_name": "ADAMTS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UP79-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 8", "gene_name": "ADAMTS8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20807-1", "protein_name": "Calpain-3", "gene_name": "CAPN3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07384-1", "protein_name": "Calpain-1 catalytic subunit", "gene_name": "CAPN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HC96-1", "protein_name": "Calpain-10", "gene_name": "CAPN10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P43235-1", "protein_name": "Cathepsin K", "gene_name": "CTSK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UMQ6-1", "protein_name": "Calpain-11", "gene_name": "CAPN11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35555-1", "protein_name": "Fibrillin-1", "gene_name": "FBN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35556-1", "protein_name": "Fibrillin-2", "gene_name": "FBN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q75N90-1", "protein_name": "Fibrillin-3", "gene_name": "FBN3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20810-1", "protein_name": "Calpastatin", "gene_name": "CAST", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08254-1", "protein_name": "Stromelysin-1", "gene_name": "MMP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22894-1", "protein_name": "Neutrophil collagenase", "gene_name": "MMP8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99542-1", "protein_name": "Matrix metalloproteinase-19", "gene_name": "MMP19", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60882-1", "protein_name": "Matrix metalloproteinase-20", "gene_name": "MMP20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IU80-4", "protein_name": "Transmembrane protease serine 6", "gene_name": "TMPRSS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49768-1", "protein_name": "Presenilin-1", "gene_name": "PSEN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14672-1", "protein_name": "Disintegrin and metalloproteinase domain-containing protein 10", "gene_name": "ADAM10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01023-1", "protein_name": "Alpha-2-macroglobulin", "gene_name": "A2M", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78325-1", "protein_name": "Disintegrin and metalloproteinase domain-containing protein 8", "gene_name": "ADAM8", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P98160", "url": "https://www.uniprot.org/uniprotkb/P98160" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.12843408", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 81 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Heparin-induced substrate behavior of antithrombin Cambridge II.", "journal": "Blood", "date": "2003", "authors": "Mushunje A, Zhou A, Carrell RW, Huntington JA", "reference": { "type": "PubMed", "id": "12907439", "url": "https://pubmed.ncbi.nlm.nih.gov/12907439" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P98160-1", "protein_name": "Basement membrane-specific heparan sulfate proteoglycan core protein", "gene_name": "HSPG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75056-1", "protein_name": "Syndecan-3", "gene_name": "SDC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07204-1", "protein_name": "Thrombomodulin", "gene_name": "THBD", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00734-1", "protein_name": "Prothrombin", "gene_name": "F2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q4KMQ2-1", "protein_name": "Anoctamin-6", "gene_name": "ANO6", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00468-1", "protein_name": "Agrin", "gene_name": "AGRN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q75V66-1", "protein_name": "Anoctamin-5", "gene_name": "ANO5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01008-1", "protein_name": "Antithrombin-III", "gene_name": "SERPINC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07093-1", "protein_name": "Glia-derived nexin", "gene_name": "SERPINE2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNN8-1", "protein_name": "Endothelial protein C receptor", "gene_name": "PROCR", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51654-1", "protein_name": "Glypican-3", "gene_name": "GPC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07359-1", "protein_name": "Platelet glycoprotein Ib alpha chain", "gene_name": "GP1BA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13224-1", "protein_name": "Platelet glycoprotein Ib beta chain", "gene_name": "GP1BB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24158-1", "protein_name": "Myeloblastin", "gene_name": "PRTN3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25116-1", "protein_name": "Proteinase-activated receptor 1", "gene_name": "F2R", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18827-1", "protein_name": "Syndecan-1", "gene_name": "SDC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04275-1", "protein_name": "von Willebrand factor", "gene_name": "VWF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17405-1", "protein_name": "Sphingomyelin phosphodiesterase", "gene_name": "SMPD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q76LX8-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 13", "gene_name": "ADAMTS13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N6Q3-1", "protein_name": "CD177 antigen", "gene_name": "CD177", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31431-1", "protein_name": "Syndecan-4", "gene_name": "SDC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y625-1", "protein_name": "Glypican-6", "gene_name": "GPC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05154-1", "protein_name": "Plasma serine protease inhibitor", "gene_name": "SERPINA5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05155-1", "protein_name": "Plasma protease C1 inhibitor", "gene_name": "SERPING1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N158-1", "protein_name": "Glypican-2", "gene_name": "GPC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P03951-1", "protein_name": "Coagulation factor XI", "gene_name": "F11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00451-1", "protein_name": "Coagulation factor VIII", "gene_name": "F8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00740-1", "protein_name": "Coagulation factor IX", "gene_name": "F9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02776-1", "protein_name": "Platelet factor 4", "gene_name": "PF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04070-1", "protein_name": "Vitamin K-dependent protein C", "gene_name": "PROC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P34741-1", "protein_name": "Syndecan-2", "gene_name": "SDC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12259-1", "protein_name": "Coagulation factor V", "gene_name": "F5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78333-1", "protein_name": "Glypican-5", "gene_name": "GPC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35052-1", "protein_name": "Glypican-1", "gene_name": "GPC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UK55-1", "protein_name": "Protein Z-dependent protease inhibitor", "gene_name": "SERPINA10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10720-1", "protein_name": "Platelet factor 4 variant", "gene_name": "PF4V1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07225-1", "protein_name": "Vitamin K-dependent protein S", "gene_name": "PROS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05546-1", "protein_name": "Heparin cofactor 2", "gene_name": "SERPIND1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22891-1", "protein_name": "Vitamin K-dependent protein Z", "gene_name": "PROZ", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00742-1", "protein_name": "Coagulation factor X", "gene_name": "F10", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75487-1", "protein_name": "Glypican-4", "gene_name": "GPC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14770-1", "protein_name": "Platelet glycoprotein IX", "gene_name": "GP9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40197-1", "protein_name": "Platelet glycoprotein V", "gene_name": "GP5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08709-1", "protein_name": "Coagulation factor VII", "gene_name": "F7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13726-1", "protein_name": "Tissue factor", "gene_name": "F3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05067-1", "protein_name": "Amyloid-beta precursor protein", "gene_name": "APP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05121-1", "protein_name": "Plasminogen activator inhibitor 1", "gene_name": "SERPINE1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P98160", "url": "https://www.uniprot.org/uniprotkb/P98160" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.12907439", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 47 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Heterodimer formation is essential for heparanase enzymatic activity.", "journal": "Biochemical and biophysical research communications", "date": "2003", "authors": "Levy-Adam F, Miao HQ, Heinrikson RL, Vlodavsky I, Ilan N", "reference": { "type": "PubMed", "id": "12927802", "url": "https://pubmed.ncbi.nlm.nih.gov/12927802" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P98160-1", "protein_name": "Basement membrane-specific heparan sulfate proteoglycan core protein", "gene_name": "HSPG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75056-1", "protein_name": "Syndecan-3", "gene_name": "SDC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P54802-1", "protein_name": "Alpha-N-acetylglucosaminidase", "gene_name": "NAGLU", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00468-1", "protein_name": "Agrin", "gene_name": "AGRN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51654-1", "protein_name": "Glypican-3", "gene_name": "GPC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22304-1", "protein_name": "Iduronate 2-sulfatase", "gene_name": "IDS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35475-1", "protein_name": "Alpha-L-iduronidase", "gene_name": "IDUA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51688-1", "protein_name": "N-sulphoglucosamine sulphohydrolase", "gene_name": "SGSH", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18827-1", "protein_name": "Syndecan-1", "gene_name": "SDC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07711-1", "protein_name": "Procathepsin L", "gene_name": "CTSL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31431-1", "protein_name": "Syndecan-4", "gene_name": "SDC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y625-1", "protein_name": "Glypican-6", "gene_name": "GPC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N158-1", "protein_name": "Glypican-2", "gene_name": "GPC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P34741-1", "protein_name": "Syndecan-2", "gene_name": "SDC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78333-1", "protein_name": "Glypican-5", "gene_name": "GPC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35052-1", "protein_name": "Glypican-1", "gene_name": "GPC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WWQ2-1", "protein_name": "Inactive heparanase-2", "gene_name": "HPSE2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y251-1", "protein_name": "Heparanase", "gene_name": "HPSE", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75487-1", "protein_name": "Glypican-4", "gene_name": "GPC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q68CP4-1", "protein_name": "Heparan-alpha-glucosaminide N-acetyltransferase", "gene_name": "HGSNAT", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P98160", "url": "https://www.uniprot.org/uniprotkb/P98160" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.12927802", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 20 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A 71-kilodalton protein is a major product of the Duchenne muscular dystrophy gene in brain and other nonmuscle tissues.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "1992-06-15", "authors": "Lederfein D, Levy Z, Augier N, Mornet D, Morris G, Fuchs O, Yaffe D, Nudel U", "reference": { "type": "PubMed", "id": "1319059", "url": "https://pubmed.ncbi.nlm.nih.gov/1319059" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P98160-1", "protein_name": "Basement membrane-specific heparan sulfate proteoglycan core protein", "gene_name": "HSPG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43556-1", "protein_name": "Epsilon-sarcoglycan", "gene_name": "SGCE", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00468-1", "protein_name": "Agrin", "gene_name": "AGRN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16585-1", "protein_name": "Beta-sarcoglycan", "gene_name": "SGCB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14714-1", "protein_name": "Sarcospan", "gene_name": "SSPN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16586-1", "protein_name": "Alpha-sarcoglycan", "gene_name": "SGCA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96LD1-1", "protein_name": "Zeta-sarcoglycan", "gene_name": "SGCZ", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92629-1", "protein_name": "Delta-sarcoglycan", "gene_name": "SGCD", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14118-1", "protein_name": "Dystroglycan 1", "gene_name": "DAG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07942-1", "protein_name": "Laminin subunit beta-1", "gene_name": "LAMB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24043-1", "protein_name": "Laminin subunit alpha-2", "gene_name": "LAMA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25391-1", "protein_name": "Laminin subunit alpha-1", "gene_name": "LAMA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6N6-1", "protein_name": "Laminin subunit gamma-3", "gene_name": "LAMC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13753-1", "protein_name": "Laminin subunit gamma-2", "gene_name": "LAMC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11047-1", "protein_name": "Laminin subunit gamma-1", "gene_name": "LAMC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46939-1", "protein_name": "Utrophin", "gene_name": "UTRN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NY99-1", "protein_name": "Gamma-2-syntrophin", "gene_name": "SNTG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13751-1", "protein_name": "Laminin subunit beta-3", "gene_name": "LAMB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16787-2", "protein_name": "Laminin subunit alpha-3", "gene_name": "LAMA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16363-1", "protein_name": "Laminin subunit alpha-4", "gene_name": "LAMA4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15230-1", "protein_name": "Laminin subunit alpha-5", "gene_name": "LAMA5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4J8-1", "protein_name": "Dystrobrevin alpha", "gene_name": "DTNA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63267-1", "protein_name": "Actin, gamma-enteric smooth muscle", "gene_name": "ACTG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68032-1", "protein_name": "Actin, alpha cardiac muscle 1", "gene_name": "ACTC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13884-1", "protein_name": "Beta-1-syntrophin", "gene_name": "SNTB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13424-1", "protein_name": "Alpha-1-syntrophin", "gene_name": "SNTA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13326-1", "protein_name": "Gamma-sarcoglycan", "gene_name": "SGCG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63261-1", "protein_name": "Actin, cytoplasmic 2", "gene_name": "ACTG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62736-1", "protein_name": "Actin, aortic smooth muscle", "gene_name": "ACTA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11532-1", "protein_name": "Dystrophin", "gene_name": "DMD", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13425-1", "protein_name": "Beta-2-syntrophin", "gene_name": "SNTB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13474-1", "protein_name": "Dystrophin-related protein 2", "gene_name": "DRP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55268-1", "protein_name": "Laminin subunit beta-2", "gene_name": "LAMB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60941-1", "protein_name": "Dystrobrevin beta", "gene_name": "DTNB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68133-1", "protein_name": "Actin, alpha skeletal muscle", "gene_name": "ACTA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60709-1", "protein_name": "Actin, cytoplasmic 1", "gene_name": "ACTB", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P98160", "url": "https://www.uniprot.org/uniprotkb/P98160" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.1319059", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 36 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Mapping of binding sites for heparin, plasminogen activator inhibitor-1, and plasminogen to vitronectin's heparin-binding region reveals a novel vitronectin-dependent feedback mechanism for the control of plasmin formation.", "journal": "The Journal of biological chemistry", "date": "1992", "authors": "Kost C, Stuber W, Ehrlich HJ, Pannekoek H, Preissner KT", "reference": { "type": "PubMed", "id": "1376317", "url": "https://pubmed.ncbi.nlm.nih.gov/1376317" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P98160-1", "protein_name": "Basement membrane-specific heparan sulfate proteoglycan core protein", "gene_name": "HSPG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51884-1", "protein_name": "Lumican", "gene_name": "LUM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02452-1", "protein_name": "Collagen alpha-1(I) chain", "gene_name": "COL1A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18084-1", "protein_name": "Integrin beta-5", "gene_name": "ITGB5", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00468-1", "protein_name": "Agrin", "gene_name": "AGRN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02751-15", "protein_name": "Fibronectin", "gene_name": "FN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P21810-1", "protein_name": "Biglycan", "gene_name": "BGN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92752-1", "protein_name": "Tenascin-R", "gene_name": "TNR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQP3-1", "protein_name": "Tenascin-N", "gene_name": "TNN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53420-1", "protein_name": "Collagen alpha-4(IV) chain", "gene_name": "COL4A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q06828-1", "protein_name": "Fibromodulin", "gene_name": "FMOD", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75096-1", "protein_name": "Low-density lipoprotein receptor-related protein 4", "gene_name": "LRP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10915-1", "protein_name": "Hyaluronan and proteoglycan link protein 1", "gene_name": "HAPLN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16112-1", "protein_name": "Aggrecan core protein", "gene_name": "ACAN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P21815-1", "protein_name": "Integrin-binding sialoprotein", "gene_name": "IBSP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49747-1", "protein_name": "Cartilage oligomeric matrix protein", "gene_name": "COMP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXN1-1", "protein_name": "Asporin", "gene_name": "ASPN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12110-1", "protein_name": "Collagen alpha-2(VI) chain", "gene_name": "COL6A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14031-1", "protein_name": "Collagen alpha-6(IV) chain", "gene_name": "COL4A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20908-1", "protein_name": "Collagen alpha-1(V) chain", "gene_name": "COL5A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02462-1", "protein_name": "Collagen alpha-1(IV) chain", "gene_name": "COL4A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08572-1", "protein_name": "Collagen alpha-2(IV) chain", "gene_name": "COL4A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20849-1", "protein_name": "Collagen alpha-1(IX) chain", "gene_name": "COL9A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25940-1", "protein_name": "Collagen alpha-3(V) chain", "gene_name": "COL5A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01955-1", "protein_name": "Collagen alpha-3(IV) chain", "gene_name": "COL4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14118-1", "protein_name": "Dystroglycan 1", "gene_name": "DAG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07942-1", "protein_name": "Laminin subunit beta-1", "gene_name": "LAMB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24043-1", "protein_name": "Laminin subunit alpha-2", "gene_name": "LAMA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25391-1", "protein_name": "Laminin subunit alpha-1", "gene_name": "LAMA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11047-1", "protein_name": "Laminin subunit gamma-1", "gene_name": "LAMC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10600-1", "protein_name": "Transforming growth factor beta-3 proprotein", "gene_name": "TGFB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13683-1", "protein_name": "Integrin alpha-7", "gene_name": "ITGA7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16787-2", "protein_name": "Laminin subunit alpha-3", "gene_name": "LAMA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18564-1", "protein_name": "Integrin beta-6", "gene_name": "ITGB6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16363-1", "protein_name": "Laminin subunit alpha-4", "gene_name": "LAMA4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15230-1", "protein_name": "Laminin subunit alpha-5", "gene_name": "LAMA5", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95460-1", "protein_name": "Matrilin-4", "gene_name": "MATN4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08514-1", "protein_name": "Integrin alpha-IIb", "gene_name": "ITGA2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06756-1", "protein_name": "Integrin alpha-V", "gene_name": "ITGAV", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53708-1", "protein_name": "Integrin alpha-8", "gene_name": "ITGA8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P21941-1", "protein_name": "Matrilin-1", "gene_name": "MATN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05556-1", "protein_name": "Integrin beta-1", "gene_name": "ITGB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02461-1", "protein_name": "Collagen alpha-1(III) chain", "gene_name": "COL3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29400-1", "protein_name": "Collagen alpha-5(IV) chain", "gene_name": "COL4A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14055-1", "protein_name": "Collagen alpha-2(IX) chain", "gene_name": "COL9A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09486-1", "protein_name": "SPARC", "gene_name": "SPARC", "tax_name": "Human" }, { "uniprot_canonical_ac": "A8TX70-1", "protein_name": "Collagen alpha-5(VI) chain", "gene_name": "COL6A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05997-1", "protein_name": "Collagen alpha-2(V) chain", "gene_name": "COL5A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "A6NMZ7-1", "protein_name": "Collagen alpha-6(VI) chain", "gene_name": "COL6A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12111-1", "protein_name": "Collagen alpha-3(VI) chain", "gene_name": "COL6A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08123-1", "protein_name": "Collagen alpha-2(I) chain", "gene_name": "COL1A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12109-1", "protein_name": "Collagen alpha-1(VI) chain", "gene_name": "COL6A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02458-2", "protein_name": "Collagen alpha-1(II) chain", "gene_name": "COL2A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14050-1", "protein_name": "Collagen alpha-3(IX) chain", "gene_name": "COL9A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05106-1", "protein_name": "Integrin beta-3", "gene_name": "ITGB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13611-1", "protein_name": "Versican core protein", "gene_name": "VCAN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07585-1", "protein_name": "Decorin", "gene_name": "DCN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04004-1", "protein_name": "Vitronectin", "gene_name": "VTN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NZW4-1", "protein_name": "Dentin sialophosphoprotein", "gene_name": "DSPP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13797-1", "protein_name": "Integrin alpha-9", "gene_name": "ITGA9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96GW7-1", "protein_name": "Brevican core protein", "gene_name": "BCAN", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15146-1", "protein_name": "Muscle, skeletal receptor tyrosine-protein kinase", "gene_name": "MUSK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13332-1", "protein_name": "Receptor-type tyrosine-protein phosphatase S", "gene_name": "PTPRS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20702-1", "protein_name": "Integrin alpha-X", "gene_name": "ITGAX", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17301-1", "protein_name": "Integrin alpha-2", "gene_name": "ITGA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15232-1", "protein_name": "Matrilin-3", "gene_name": "MATN3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22105-3", "protein_name": "Tenascin-X", "gene_name": "TNXB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13591-2", "protein_name": "Neural cell adhesion molecule 1", "gene_name": "NCAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13316-1", "protein_name": "Dentin matrix acidic phosphoprotein 1", "gene_name": "DMP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55268-1", "protein_name": "Laminin subunit beta-2", "gene_name": "LAMB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24821-1", "protein_name": "Tenascin", "gene_name": "TNC", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14594-1", "protein_name": "Neurocan core protein", "gene_name": "NCAN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05067-1", "protein_name": "Amyloid-beta precursor protein", "gene_name": "APP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01137-1", "protein_name": "Transforming growth factor beta-1 proprotein", "gene_name": "TGFB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61812-1", "protein_name": "Transforming growth factor beta-2 proprotein", "gene_name": "TGFB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05121-1", "protein_name": "Plasminogen activator inhibitor 1", "gene_name": "SERPINE1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P98160", "url": "https://www.uniprot.org/uniprotkb/P98160" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.1376317", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 76 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Siah-1 facilitates ubiquitination and degradation of synphilin-1.", "journal": "The Journal of biological chemistry", "date": "2003", "authors": "Nagano Y, Yamashita H, Takahashi T, Kishida S, Nakamura T, Iseki E, Hattori N, Mizuno Y, Kikuchi A, Matsumoto M", "reference": { "type": "PubMed", "id": "14506261", "url": "https://pubmed.ncbi.nlm.nih.gov/14506261" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P98160-1", "protein_name": "Basement membrane-specific heparan sulfate proteoglycan core protein", "gene_name": "HSPG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61626-1", "protein_name": "Lysozyme C", "gene_name": "LYZ", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0DJI8-1", "protein_name": "Serum amyloid A-1 protein", "gene_name": "SAA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04279-1", "protein_name": "Semenogelin-1", "gene_name": "SEMG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95858-1", "protein_name": "Tetraspanin-15", "gene_name": "TSPAN15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02788-1", "protein_name": "Lactotransferrin", "gene_name": "LTF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02671-1", "protein_name": "Fibrinogen alpha chain", "gene_name": "FGA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92542-1", "protein_name": "Nicastrin", "gene_name": "NCSTN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BI3-1", "protein_name": "Gamma-secretase subunit APH-1A", "gene_name": "APH1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14933-1", "protein_name": "Ubiquitin/ISG15-conjugating enzyme E2 L6", "gene_name": "UBE2L6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09958-1", "protein_name": "Furin", "gene_name": "FURIN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0C0S5-1", "protein_name": "Histone H2A.Z", "gene_name": "H2AZ1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NZ42-1", "protein_name": "Gamma-secretase subunit PEN-2", "gene_name": "PSENEN", "tax_name": "Human" }, { "uniprot_canonical_ac": "A1E959-1", "protein_name": "Odontogenic ameloblast-associated protein", "gene_name": "ODAM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10997-1", "protein_name": "Islet amyloid polypeptide", "gene_name": "IAPP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02743-1", "protein_name": "Serum amyloid P-component", "gene_name": "APCS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01236-1", "protein_name": "Prolactin", "gene_name": "PRL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6H5-1", "protein_name": "Synphilin-1", "gene_name": "SNCAIP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92673-1", "protein_name": "Sortilin-related receptor", "gene_name": "SORL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84243-1", "protein_name": "Histone H3.3", "gene_name": "H3-3A; H3-3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15582-1", "protein_name": "Transforming growth factor-beta-induced protein ig-h3", "gene_name": "TGFBI", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02649-1", "protein_name": "Apolipoprotein E", "gene_name": "APOE", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01258-1", "protein_name": "Calcitonin", "gene_name": "CALCA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UJY5-1", "protein_name": "ADP-ribosylation factor-binding protein GGA1", "gene_name": "GGA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05937-1", "protein_name": "Calbindin", "gene_name": "CALB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02766-1", "protein_name": "Transthyretin", "gene_name": "TTR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y287-1", "protein_name": "Integral membrane protein 2B", "gene_name": "ITM2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43255-1", "protein_name": "E3 ubiquitin-protein ligase SIAH2", "gene_name": "SIAH2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62079-1", "protein_name": "Tetraspanin-5", "gene_name": "TSPAN5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86UF1-1", "protein_name": "Tetraspanin-33", "gene_name": "TSPAN33", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62805-1", "protein_name": "Histone H4", "gene_name": "H4C11; H4C12; H4C13; H4C14; H4C15; H4C16; H4C1; H4C2; H4C3; H4C4; H4C5; H4C6; H4C8; H4C9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68431-1", "protein_name": "Histone H3.1", "gene_name": "H3C10; H3C11; H3C12; H3C1; H3C2; H3C3; H3C4; H3C6; H3C7; H3C8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61769-1", "protein_name": "Beta-2-microglobulin", "gene_name": "B2M", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01160-1", "protein_name": "Natriuretic peptides A", "gene_name": "NPPA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06727-1", "protein_name": "Apolipoprotein A-IV", "gene_name": "APOA4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WW43-1", "protein_name": "Gamma-secretase subunit APH-1B", "gene_name": "APH1B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16778-1", "protein_name": "Histone H2B type 2-E", "gene_name": "H2BC21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62807-1", "protein_name": "Histone H2B type 1-C/E/F/G/I", "gene_name": "H2BC10; H2BC4; H2BC6; H2BC7; H2BC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06396-1", "protein_name": "Gelsolin", "gene_name": "GSN", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60260-1", "protein_name": "E3 ubiquitin-protein ligase parkin", "gene_name": "PRKN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01034-1", "protein_name": "Cystatin-C", "gene_name": "CST3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NZ52-1", "protein_name": "ADP-ribosylation factor-binding protein GGA3", "gene_name": "GGA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71DI3-1", "protein_name": "Histone H3.2", "gene_name": "H3C13; H3C14; H3C15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UJY4-1", "protein_name": "ADP-ribosylation factor-binding protein GGA2", "gene_name": "GGA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16104-1", "protein_name": "Histone H2AX", "gene_name": "H2AX", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33778-1", "protein_name": "Histone H2B type 1-B", "gene_name": "H2BC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P58876-1", "protein_name": "Histone H2B type 1-D", "gene_name": "H2BC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A08-1", "protein_name": "Histone H2B type 1-A", "gene_name": "H2BC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23527-1", "protein_name": "Histone H2B type 1-O", "gene_name": "H2BC17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0C5Y9-1", "protein_name": "Histone H2A-Bbd type 1", "gene_name": "H2AB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93008-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 9X", "gene_name": "USP9X", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60814-1", "protein_name": "Histone H2B type 1-K", "gene_name": "H2BC12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93077-1", "protein_name": "Histone H2A type 1-C", "gene_name": "H2AC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93079-1", "protein_name": "Histone H2B type 1-H", "gene_name": "H2BC9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99879-1", "protein_name": "Histone H2B type 1-M", "gene_name": "H2BC14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NG11-1", "protein_name": "Tetraspanin-14", "gene_name": "TSPAN14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHE5-1", "protein_name": "N-acetyltransferase 8", "gene_name": "NAT8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHF3-1", "protein_name": "N-acetyltransferase 8B", "gene_name": "NAT8B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P56817-1", "protein_name": "Beta-secretase 1", "gene_name": "BACE1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG47-1", "protein_name": "Polyubiquitin-B", "gene_name": "UBB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01308-1", "protein_name": "Insulin", "gene_name": "INS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04908-1", "protein_name": "Histone H2A type 1-B/E", "gene_name": "H2AC4; H2AC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06899-1", "protein_name": "Histone H2B type 1-J", "gene_name": "H2BC11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20671-1", "protein_name": "Histone H2A type 1-D", "gene_name": "H2AC7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57053-1", "protein_name": "Histone H2B type F-S", "gene_name": "H2BC12L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16777-1", "protein_name": "Histone H2A type 2-C", "gene_name": "H2AC20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6FI13-1", "protein_name": "Histone H2A type 2-A", "gene_name": "H2AC18; H2AC19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N257-1", "protein_name": "Histone H2B type 3-B", "gene_name": "H2BC26", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99877-1", "protein_name": "Histone H2B type 1-N", "gene_name": "H2BC15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99878-1", "protein_name": "Histone H2A type 1-J", "gene_name": "H2AC14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99880-1", "protein_name": "Histone H2B type 1-L", "gene_name": "H2BC13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08431-1", "protein_name": "Lactadherin", "gene_name": "MFGE8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05067-1", "protein_name": "Amyloid-beta precursor protein", "gene_name": "APP", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14672-1", "protein_name": "Disintegrin and metalloproteinase domain-containing protein 10", "gene_name": "ADAM10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02647-1", "protein_name": "Apolipoprotein A-I", "gene_name": "APOA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IUQ4-1", "protein_name": "E3 ubiquitin-protein ligase SIAH1", "gene_name": "SIAH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG48-1", "protein_name": "Polyubiquitin-C", "gene_name": "UBC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P37840-1", "protein_name": "Alpha-synuclein", "gene_name": "SNCA", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P98160", "url": "https://www.uniprot.org/uniprotkb/P98160" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.14506261", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 80 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Divergent retroviral late-budding domains recruit vacuolar protein sorting factors by using alternative adaptor proteins.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2003", "authors": "Martin-Serrano J, Yarovoy A, Perez-Caballero D, Bieniasz PD", "reference": { "type": "PubMed", "id": "14519844", "url": "https://pubmed.ncbi.nlm.nih.gov/14519844" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P98160-1", "protein_name": "Basement membrane-specific heparan sulfate proteoglycan core protein", "gene_name": "HSPG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13247-1", "protein_name": "Serine/arginine-rich splicing factor 6", "gene_name": "SRSF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16629-1", "protein_name": "Serine/arginine-rich splicing factor 7", "gene_name": "SRSF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13984-1", "protein_name": "General transcription factor IIF subunit 2", "gene_name": "GTF2F2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63162-1", "protein_name": "Small nuclear ribonucleoprotein-associated protein N", "gene_name": "SNRPN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30876-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB2", "gene_name": "POLR2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61218-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC2", "gene_name": "POLR2F", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75533-1", "protein_name": "Splicing factor 3B subunit 1", "gene_name": "SF3B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75056-1", "protein_name": "Syndecan-3", "gene_name": "SDC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15514-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB4", "gene_name": "POLR2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3B4-1", "protein_name": "Splicing factor 3B subunit 6", "gene_name": "SF3B6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00734-1", "protein_name": "Prothrombin", "gene_name": "F2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0L4-1", "protein_name": "Cleavage stimulation factor subunit 2 tau variant", "gene_name": "CSTF2T", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UN37-1", "protein_name": "Vacuolar protein sorting-associated protein 4A", "gene_name": "VPS4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51955-1", "protein_name": "Serine/threonine-protein kinase Nek2", "gene_name": "NEK2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86V81-1", "protein_name": "THO complex subunit 4", "gene_name": "ALYREF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07157-1", "protein_name": "Tight junction protein 1", "gene_name": "TJP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00468-1", "protein_name": "Agrin", "gene_name": "AGRN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96H20-1", "protein_name": "Vacuolar-sorting protein SNF8", "gene_name": "SNF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24928-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB1", "gene_name": "POLR2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13554-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit beta", "gene_name": "CAMK2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99459-1", "protein_name": "Cell division cycle 5-like protein", "gene_name": "CDC5L", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60306-1", "protein_name": "RNA helicase aquarius", "gene_name": "AQR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05519-1", "protein_name": "Serine/arginine-rich splicing factor 11", "gene_name": "SRSF11", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94906-1", "protein_name": "Pre-mRNA-processing factor 6", "gene_name": "PRPF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNP9-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase E", "gene_name": "PPIE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9ULR0-3", "protein_name": "Pre-mRNA-splicing factor ISY1 homolog", "gene_name": "ISY1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCS7-1", "protein_name": "Pre-mRNA-splicing factor SYF1", "gene_name": "XAB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHY1-1", "protein_name": "Nuclear receptor-binding protein", "gene_name": "NRBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07020-1", "protein_name": "Large ribosomal subunit protein eL18", "gene_name": "RPL18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYB3-1", "protein_name": "Serine/arginine repetitive matrix protein 1", "gene_name": "SRRM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UMS4-1", "protein_name": "Pre-mRNA-processing factor 19", "gene_name": "PRPF19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07955-1", "protein_name": "Serine/arginine-rich splicing factor 1", "gene_name": "SRSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83876-1", "protein_name": "Thioredoxin-like protein 4A", "gene_name": "TXNL4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43660-1", "protein_name": "Pleiotropic regulator 1", "gene_name": "PLRG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96FZ7-1", "protein_name": "Charged multivesicular body protein 6", "gene_name": "CHMP6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01130-1", "protein_name": "Serine/arginine-rich splicing factor 2", "gene_name": "SRSF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q10570-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 1", "gene_name": "CPSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6UX04-1", "protein_name": "Spliceosome-associated protein CWC27 homolog", "gene_name": "CWC27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKF6-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 3", "gene_name": "CPSF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75937-1", "protein_name": "DnaJ homolog subfamily C member 8", "gene_name": "DNAJC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17542-1", "protein_name": "T-cell acute lymphocytic leukemia protein 1", "gene_name": "TAL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60828-1", "protein_name": "Polyglutamine-binding protein 1", "gene_name": "PQBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51654-1", "protein_name": "Glypican-3", "gene_name": "GPC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15029-1", "protein_name": "116 kDa U5 small nuclear ribonucleoprotein component", "gene_name": "EFTUD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12874-1", "protein_name": "Splicing factor 3A subunit 3", "gene_name": "SF3A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75940-1", "protein_name": "Survival of motor neuron-related-splicing factor 30", "gene_name": "SMNDC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14678-1", "protein_name": "Small nuclear ribonucleoprotein-associated proteins B and B'", "gene_name": "SNRPB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQM7-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit alpha", "gene_name": "CAMK2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7LBR1-1", "protein_name": "Charged multivesicular body protein 1b", "gene_name": "CHMP1B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BY43-1", "protein_name": "Charged multivesicular body protein 4a", "gene_name": "CHMP4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3E7-1", "protein_name": "Charged multivesicular body protein 3", "gene_name": "CHMP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2W2-1", "protein_name": "WW domain-binding protein 11", "gene_name": "WBP11", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43633-1", "protein_name": "Charged multivesicular body protein 2a", "gene_name": "CHMP2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQN3-1", "protein_name": "Charged multivesicular body protein 2b", "gene_name": "CHMP2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75643-1", "protein_name": "U5 small nuclear ribonucleoprotein 200 kDa helicase", "gene_name": "SNRNP200", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09651-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A1", "gene_name": "HNRNPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94913-1", "protein_name": "Pre-mRNA cleavage complex 2 protein Pcf11", "gene_name": "PCF11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84103-1", "protein_name": "Serine/arginine-rich splicing factor 3", "gene_name": "SRSF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52435-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB11-a", "gene_name": "POLR2J", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36954-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB9", "gene_name": "POLR2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQ35-1", "protein_name": "Serine/arginine repetitive matrix protein 2", "gene_name": "SRRM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19388-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35269-1", "protein_name": "General transcription factor IIF subunit 1", "gene_name": "GTF2F1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53803-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52434-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC3", "gene_name": "POLR2H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62487-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB7", "gene_name": "POLR2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13151-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A0", "gene_name": "HNRNPA0", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18827-1", "protein_name": "Syndecan-1", "gene_name": "SDC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09661-1", "protein_name": "U2 small nuclear ribonucleoprotein A'", "gene_name": "SNRPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BWJ5-1", "protein_name": "Splicing factor 3B subunit 5", "gene_name": "SF3B5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WYA6-1", "protein_name": "Beta-catenin-like protein 1", "gene_name": "CTNNBL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q00839-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein U", "gene_name": "HNRNPU", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95639-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 4", "gene_name": "CPSF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7L014-1", "protein_name": "Probable ATP-dependent RNA helicase DDX46", "gene_name": "DDX46", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62875-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC5", "gene_name": "POLR2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUJ2-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein U-like protein 1", "gene_name": "HNRNPUL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99816-1", "protein_name": "Tumor susceptibility gene 101 protein", "gene_name": "TSG101", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19387-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHX1-1", "protein_name": "Poly(U)-binding-splicing factor PUF60", "gene_name": "PUF60", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41223-1", "protein_name": "Protein BUD31 homolog", "gene_name": "BUD31", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRG1-1", "protein_name": "Vacuolar protein-sorting-associated protein 25", "gene_name": "VPS25", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZJ0-1", "protein_name": "Crooked neck-like protein 1", "gene_name": "CRNKL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUM4-1", "protein_name": "Programmed cell death 6-interacting protein", "gene_name": "PDCD6IP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IX12-1", "protein_name": "Cell division cycle and apoptosis regulator protein 1", "gene_name": "CCAR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38919-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "EIF4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWX8-1", "protein_name": "Calcium homeostasis endoplasmic reticulum protein", "gene_name": "CHERP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96CF2-1", "protein_name": "Charged multivesicular body protein 4c", "gene_name": "CHMP4C", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95400-1", "protein_name": "CD2 antigen cytoplasmic tail-binding protein 2", "gene_name": "CD2BP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15287-1", "protein_name": "RNA-binding protein with serine-rich domain 1", "gene_name": "RNPS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62316-1", "protein_name": "Small nuclear ribonucleoprotein Sm D2", "gene_name": "SNRPD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17844-1", "protein_name": "Probable ATP-dependent RNA helicase DDX5", "gene_name": "DDX5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NZZ3-1", "protein_name": "Charged multivesicular body protein 5", "gene_name": "CHMP5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HD42-1", "protein_name": "Charged multivesicular body protein 1a", "gene_name": "CHMP1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52756-1", "protein_name": "RNA-binding protein 5", "gene_name": "RBM5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62308-1", "protein_name": "Small nuclear ribonucleoprotein G", "gene_name": "SNRPG", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12996-1", "protein_name": "Cleavage stimulation factor subunit 3", "gene_name": "CSTF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43143-1", "protein_name": "ATP-dependent RNA helicase DHX15", "gene_name": "DHX15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWZ8-1", "protein_name": "SURP and G-patch domain-containing protein 1", "gene_name": "SUGP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31431-1", "protein_name": "Syndecan-4", "gene_name": "SDC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00206-1", "protein_name": "Toll-like receptor 4", "gene_name": "TLR4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6Y9-1", "protein_name": "Lymphocyte antigen 96", "gene_name": "LY96", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y625-1", "protein_name": "Glypican-6", "gene_name": "GPC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92733-1", "protein_name": "Proline-rich protein PRCC", "gene_name": "PRCC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2H8-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 3", "gene_name": "PPIL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86VN1-1", "protein_name": "Vacuolar protein-sorting-associated protein 36", "gene_name": "VPS36", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08170-1", "protein_name": "Serine/arginine-rich splicing factor 4", "gene_name": "SRSF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N158-1", "protein_name": "Glypican-2", "gene_name": "GPC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08579-1", "protein_name": "U2 small nuclear ribonucleoprotein B''", "gene_name": "SNRPB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HAV7-1", "protein_name": "GrpE protein homolog 1, mitochondrial", "gene_name": "GRPEL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51003-1", "protein_name": "Poly(A) polymerase alpha", "gene_name": "PAPOLA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15366-1", "protein_name": "Poly(rC)-binding protein 2", "gene_name": "PCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26599-3", "protein_name": "Polypyrimidine tract-binding protein 1", "gene_name": "PTBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15365-1", "protein_name": "Poly(rC)-binding protein 1", "gene_name": "PCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P2Q9-1", "protein_name": "Pre-mRNA-processing-splicing factor 8", "gene_name": "PRPF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35222-1", "protein_name": "Catenin beta-1", "gene_name": "CTNNB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07910-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins C1/C2", "gene_name": "HNRNPC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08670-1", "protein_name": "Vimentin", "gene_name": "VIM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63172-1", "protein_name": "Dynein light chain Tctex-type 1", "gene_name": "DYNLT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0C0S8-1", "protein_name": "Histone H2A type 1", "gene_name": "H2AC11; H2AC13; H2AC15; H2AC16; H2AC17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11142-1", "protein_name": "Heat shock cognate 71 kDa protein", "gene_name": "HSPA8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62805-1", "protein_name": "Histone H4", "gene_name": "H4C11; H4C12; H4C13; H4C14; H4C15; H4C16; H4C1; H4C2; H4C3; H4C4; H4C5; H4C6; H4C8; H4C9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68431-1", "protein_name": "Histone H3.1", "gene_name": "H3C10; H3C11; H3C12; H3C1; H3C2; H3C3; H3C4; H3C6; H3C7; H3C8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43390-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein R", "gene_name": "HNRNPR", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52597-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein F", "gene_name": "HNRNPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63279-1", "protein_name": "SUMO-conjugating enzyme UBC9", "gene_name": "UBE2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08211-1", "protein_name": "ATP-dependent RNA helicase A", "gene_name": "DHX9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52272-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein M", "gene_name": "HNRNPM", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16778-1", "protein_name": "Histone H2B type 2-E", "gene_name": "H2BC21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01081-1", "protein_name": "Splicing factor U2AF 35 kDa subunit", "gene_name": "U2AF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62807-1", "protein_name": "Histone H2B type 1-C/E/F/G/I", "gene_name": "H2BC10; H2BC4; H2BC6; H2BC7; H2BC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26368-1", "protein_name": "Splicing factor U2AF 65 kDa subunit", "gene_name": "U2AF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75934-1", "protein_name": "Pre-mRNA-splicing factor SPF27", "gene_name": "BCAS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N684-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 7", "gene_name": "CPSF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62306-1", "protein_name": "Small nuclear ribonucleoprotein F", "gene_name": "SNRPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92797-1", "protein_name": "Symplekin", "gene_name": "SYMPK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WTW3-1", "protein_name": "Conserved oligomeric Golgi complex subunit 1", "gene_name": "COG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92538-4", "protein_name": "Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1", "gene_name": "GBF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P2I0-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 2", "gene_name": "CPSF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3C6-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 1", "gene_name": "PPIL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14780-1", "protein_name": "Matrix metalloproteinase-9", "gene_name": "MMP9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P34741-1", "protein_name": "Syndecan-2", "gene_name": "SDC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49327-1", "protein_name": "Fatty acid synthase", "gene_name": "FASN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NXE8-1", "protein_name": "Pre-mRNA-splicing factor CWC25 homolog", "gene_name": "CWC25", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P013-1", "protein_name": "Spliceosome-associated protein CWC15 homolog", "gene_name": "CWC15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62318-1", "protein_name": "Small nuclear ribonucleoprotein Sm D3", "gene_name": "SNRPD3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCG8-1", "protein_name": "Pre-mRNA-splicing factor CWC22 homolog", "gene_name": "CWC22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78333-1", "protein_name": "Glypican-5", "gene_name": "GPC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35052-1", "protein_name": "Glypican-1", "gene_name": "GPC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05048-1", "protein_name": "Cleavage stimulation factor subunit 1", "gene_name": "CSTF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13557-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit delta", "gene_name": "CAMK2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33240-1", "protein_name": "Cleavage stimulation factor subunit 2", "gene_name": "CSTF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15428-1", "protein_name": "Splicing factor 3A subunit 2", "gene_name": "SF3A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15427-1", "protein_name": "Splicing factor 3B subunit 4", "gene_name": "SF3B4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71DI3-1", "protein_name": "Histone H3.2", "gene_name": "H3C13; H3C14; H3C15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y679-2", "protein_name": "Lipid droplet-regulating VLDL assembly factor AUP1", "gene_name": "AUP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H444-1", "protein_name": "Charged multivesicular body protein 4b", "gene_name": "CHMP4B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67809-1", "protein_name": "Y-box-binding protein 1", "gene_name": "YBX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13435-1", "protein_name": "Splicing factor 3B subunit 2", "gene_name": "SF3B2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUQ8-1", "protein_name": "Probable ATP-dependent RNA helicase DDX23", "gene_name": "DDX23", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92620-1", "protein_name": "Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16", "gene_name": "DHX38", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60231-1", "protein_name": "Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16", "gene_name": "DHX16", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15459-1", "protein_name": "Splicing factor 3A subunit 1", "gene_name": "SF3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5QNW6-1", "protein_name": "Histone H2B type 2-F", "gene_name": "H2BC18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62304-1", "protein_name": "Small nuclear ribonucleoprotein E", "gene_name": "SNRPE", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33778-1", "protein_name": "Histone H2B type 1-B", "gene_name": "H2BC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P58876-1", "protein_name": "Histone H2B type 1-D", "gene_name": "H2BC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A08-1", "protein_name": "Histone H2B type 1-A", "gene_name": "H2BC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23527-1", "protein_name": "Histone H2B type 1-O", "gene_name": "H2BC17", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13242-1", "protein_name": "Serine/arginine-rich splicing factor 9", "gene_name": "SRSF9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86U42-1", "protein_name": "Polyadenylate-binding protein 2", "gene_name": "PABPN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7RTV0-1", "protein_name": "PHD finger-like domain-containing protein 5A", "gene_name": "PHF5A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IXY8-1", "protein_name": "Probable inactive peptidyl-prolyl cis-trans isomerase-like 6", "gene_name": "PPIL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUA2-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 4", "gene_name": "PPIL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51991-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A3", "gene_name": "HNRNPA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14103-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein D0", "gene_name": "HNRNPD", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31943-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein H", "gene_name": "HNRNPH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55795-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein H2", "gene_name": "HNRNPH2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13555-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit gamma", "gene_name": "CAMK2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXP5-1", "protein_name": "Serrate RNA effector molecule homolog", "gene_name": "SRRT", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60814-1", "protein_name": "Histone H2B type 1-K", "gene_name": "H2BC12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93077-1", "protein_name": "Histone H2A type 1-C", "gene_name": "H2AC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93079-1", "protein_name": "Histone H2B type 1-H", "gene_name": "H2BC9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96KK5-1", "protein_name": "Histone H2A type 1-H", "gene_name": "H2AC12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99879-1", "protein_name": "Histone H2B type 1-M", "gene_name": "H2BC14", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15042-1", "protein_name": "U2 snRNP-associated SURP motif-containing protein", "gene_name": "U2SURP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96DI7-1", "protein_name": "U5 small nuclear ribonucleoprotein 40 kDa protein", "gene_name": "SNRNP40", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60508-1", "protein_name": "Pre-mRNA-processing factor 17", "gene_name": "CDC40", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13243-1", "protein_name": "Serine/arginine-rich splicing factor 5", "gene_name": "SRSF5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WU68-1", "protein_name": "Splicing factor U2AF 26 kDa subunit", "gene_name": "U2AF1L4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15393-1", "protein_name": "Splicing factor 3B subunit 3", "gene_name": "SF3B3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96I25-1", "protein_name": "Splicing factor 45", "gene_name": "RBM17", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43809-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 5", "gene_name": "NUDT21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92917-1", "protein_name": "G-patch domain and KOW motifs-containing protein", "gene_name": "GPKOW", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92989-1", "protein_name": "Polyribonucleotide 5'-hydroxyl-kinase Clp1", "gene_name": "CLP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86XP3-1", "protein_name": "ATP-dependent RNA helicase DDX42", "gene_name": "DDX42", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13573-1", "protein_name": "SNW domain-containing protein 1", "gene_name": "SNW1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NW64-1", "protein_name": "Pre-mRNA-splicing factor RBM22", "gene_name": "RBM22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35637-1", "protein_name": "RNA-binding protein FUS", "gene_name": "FUS", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6UN15-1", "protein_name": "Pre-mRNA 3'-end-processing factor FIP1", "gene_name": "FIP1L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75487-1", "protein_name": "Glypican-4", "gene_name": "GPC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62314-1", "protein_name": "Small nuclear ribonucleoprotein Sm D1", "gene_name": "SNRPD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22626-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins A2/B1", "gene_name": "HNRNPA2B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14866-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein L", "gene_name": "HNRNPL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04908-1", "protein_name": "Histone H2A type 1-B/E", "gene_name": "H2AC4; H2AC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06899-1", "protein_name": "Histone H2B type 1-J", "gene_name": "H2BC11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20671-1", "protein_name": "Histone H2A type 1-D", "gene_name": "H2AC7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16777-1", "protein_name": "Histone H2A type 2-C", "gene_name": "H2AC20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6FI13-1", "protein_name": "Histone H2A type 2-A", "gene_name": "H2AC18; H2AC19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7L7L0-1", "protein_name": "Histone H2A type 3", "gene_name": "H2AC25", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IUE6-1", "protein_name": "Histone H2A type 2-B", "gene_name": "H2AC21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N257-1", "protein_name": "Histone H2B type 3-B", "gene_name": "H2BC26", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96QV6-1", "protein_name": "Histone H2A type 1-A", "gene_name": "H2AC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99877-1", "protein_name": "Histone H2B type 1-N", "gene_name": "H2BC15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99878-1", "protein_name": "Histone H2A type 1-J", "gene_name": "H2AC14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99880-1", "protein_name": "Histone H2B type 1-L", "gene_name": "H2BC13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12926-1", "protein_name": "ELAV-like protein 2", "gene_name": "ELAVL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15717-1", "protein_name": "ELAV-like protein 1", "gene_name": "ELAVL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9C0J8-1", "protein_name": "pre-mRNA 3' end processing protein WDR33", "gene_name": "WDR33", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02647-1", "protein_name": "Apolipoprotein A-I", "gene_name": "APOA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38159-1", "protein_name": "RNA-binding motif protein, X chromosome", "gene_name": "RBMX", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40855-1", "protein_name": "Peroxisomal biogenesis factor 19", "gene_name": "PEX19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61978-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein K", "gene_name": "HNRNPK", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P98160", "url": "https://www.uniprot.org/uniprotkb/P98160" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.14519844", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 225 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Biochemical and structural characterization of the interaction of memapsin 2 (beta-secretase) cytosolic domain with the VHS domain of GGA proteins.", "journal": "Biochemistry", "date": "2003", "authors": "He X, Zhu G, Koelsch G, Rodgers KK, Zhang XC, Tang J", "reference": { "type": "PubMed", "id": "14567678", "url": "https://pubmed.ncbi.nlm.nih.gov/14567678" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P98160-1", "protein_name": "Basement membrane-specific heparan sulfate proteoglycan core protein", "gene_name": "HSPG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61626-1", "protein_name": "Lysozyme C", "gene_name": "LYZ", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0DJI8-1", "protein_name": "Serum amyloid A-1 protein", "gene_name": "SAA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04279-1", "protein_name": "Semenogelin-1", "gene_name": "SEMG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95858-1", "protein_name": "Tetraspanin-15", "gene_name": "TSPAN15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02788-1", "protein_name": "Lactotransferrin", "gene_name": "LTF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02671-1", "protein_name": "Fibrinogen alpha chain", "gene_name": "FGA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92542-1", "protein_name": "Nicastrin", "gene_name": "NCSTN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BI3-1", "protein_name": "Gamma-secretase subunit APH-1A", "gene_name": "APH1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14933-1", "protein_name": "Ubiquitin/ISG15-conjugating enzyme E2 L6", "gene_name": "UBE2L6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09958-1", "protein_name": "Furin", "gene_name": "FURIN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0C0S5-1", "protein_name": "Histone H2A.Z", "gene_name": "H2AZ1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NZ42-1", "protein_name": "Gamma-secretase subunit PEN-2", "gene_name": "PSENEN", "tax_name": "Human" }, { "uniprot_canonical_ac": "A1E959-1", "protein_name": "Odontogenic ameloblast-associated protein", "gene_name": "ODAM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10997-1", "protein_name": "Islet amyloid polypeptide", "gene_name": "IAPP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02743-1", "protein_name": "Serum amyloid P-component", "gene_name": "APCS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01236-1", "protein_name": "Prolactin", "gene_name": "PRL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6H5-1", "protein_name": "Synphilin-1", "gene_name": "SNCAIP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92673-1", "protein_name": "Sortilin-related receptor", "gene_name": "SORL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84243-1", "protein_name": "Histone H3.3", "gene_name": "H3-3A; H3-3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15582-1", "protein_name": "Transforming growth factor-beta-induced protein ig-h3", "gene_name": "TGFBI", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02649-1", "protein_name": "Apolipoprotein E", "gene_name": "APOE", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01258-1", "protein_name": "Calcitonin", "gene_name": "CALCA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UJY5-1", "protein_name": "ADP-ribosylation factor-binding protein GGA1", "gene_name": "GGA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05937-1", "protein_name": "Calbindin", "gene_name": "CALB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02766-1", "protein_name": "Transthyretin", "gene_name": "TTR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y287-1", "protein_name": "Integral membrane protein 2B", "gene_name": "ITM2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43255-1", "protein_name": "E3 ubiquitin-protein ligase SIAH2", "gene_name": "SIAH2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62079-1", "protein_name": "Tetraspanin-5", "gene_name": "TSPAN5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86UF1-1", "protein_name": "Tetraspanin-33", "gene_name": "TSPAN33", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62805-1", "protein_name": "Histone H4", "gene_name": "H4C11; H4C12; H4C13; H4C14; H4C15; H4C16; H4C1; H4C2; H4C3; H4C4; H4C5; H4C6; H4C8; H4C9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68431-1", "protein_name": "Histone H3.1", "gene_name": "H3C10; H3C11; H3C12; H3C1; H3C2; H3C3; H3C4; H3C6; H3C7; H3C8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61769-1", "protein_name": "Beta-2-microglobulin", "gene_name": "B2M", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01160-1", "protein_name": "Natriuretic peptides A", "gene_name": "NPPA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06727-1", "protein_name": "Apolipoprotein A-IV", "gene_name": "APOA4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WW43-1", "protein_name": "Gamma-secretase subunit APH-1B", "gene_name": "APH1B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16778-1", "protein_name": "Histone H2B type 2-E", "gene_name": "H2BC21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62807-1", "protein_name": "Histone H2B type 1-C/E/F/G/I", "gene_name": "H2BC10; H2BC4; H2BC6; H2BC7; H2BC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06396-1", "protein_name": "Gelsolin", "gene_name": "GSN", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60260-1", "protein_name": "E3 ubiquitin-protein ligase parkin", "gene_name": "PRKN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01034-1", "protein_name": "Cystatin-C", "gene_name": "CST3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NZ52-1", "protein_name": "ADP-ribosylation factor-binding protein GGA3", "gene_name": "GGA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71DI3-1", "protein_name": "Histone H3.2", "gene_name": "H3C13; H3C14; H3C15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UJY4-1", "protein_name": "ADP-ribosylation factor-binding protein GGA2", "gene_name": "GGA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16104-1", "protein_name": "Histone H2AX", "gene_name": "H2AX", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33778-1", "protein_name": "Histone H2B type 1-B", "gene_name": "H2BC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P58876-1", "protein_name": "Histone H2B type 1-D", "gene_name": "H2BC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A08-1", "protein_name": "Histone H2B type 1-A", "gene_name": "H2BC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23527-1", "protein_name": "Histone H2B type 1-O", "gene_name": "H2BC17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0C5Y9-1", "protein_name": "Histone H2A-Bbd type 1", "gene_name": "H2AB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93008-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 9X", "gene_name": "USP9X", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60814-1", "protein_name": "Histone H2B type 1-K", "gene_name": "H2BC12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93077-1", "protein_name": "Histone H2A type 1-C", "gene_name": "H2AC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93079-1", "protein_name": "Histone H2B type 1-H", "gene_name": "H2BC9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99879-1", "protein_name": "Histone H2B type 1-M", "gene_name": "H2BC14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NG11-1", "protein_name": "Tetraspanin-14", "gene_name": "TSPAN14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHE5-1", "protein_name": "N-acetyltransferase 8", "gene_name": "NAT8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHF3-1", "protein_name": "N-acetyltransferase 8B", "gene_name": "NAT8B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P56817-1", "protein_name": "Beta-secretase 1", "gene_name": "BACE1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG47-1", "protein_name": "Polyubiquitin-B", "gene_name": "UBB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01308-1", "protein_name": "Insulin", "gene_name": "INS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04908-1", "protein_name": "Histone H2A type 1-B/E", "gene_name": "H2AC4; H2AC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06899-1", "protein_name": "Histone H2B type 1-J", "gene_name": "H2BC11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20671-1", "protein_name": "Histone H2A type 1-D", "gene_name": "H2AC7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57053-1", "protein_name": "Histone H2B type F-S", "gene_name": "H2BC12L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16777-1", "protein_name": "Histone H2A type 2-C", "gene_name": "H2AC20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6FI13-1", "protein_name": "Histone H2A type 2-A", "gene_name": "H2AC18; H2AC19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N257-1", "protein_name": "Histone H2B type 3-B", "gene_name": "H2BC26", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99877-1", "protein_name": "Histone H2B type 1-N", "gene_name": "H2BC15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99878-1", "protein_name": "Histone H2A type 1-J", "gene_name": "H2AC14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99880-1", "protein_name": "Histone H2B type 1-L", "gene_name": "H2BC13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08431-1", "protein_name": "Lactadherin", "gene_name": "MFGE8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05067-1", "protein_name": "Amyloid-beta precursor protein", "gene_name": "APP", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14672-1", "protein_name": "Disintegrin and metalloproteinase domain-containing protein 10", "gene_name": "ADAM10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02647-1", "protein_name": "Apolipoprotein A-I", "gene_name": "APOA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IUQ4-1", "protein_name": "E3 ubiquitin-protein ligase SIAH1", "gene_name": "SIAH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG48-1", "protein_name": "Polyubiquitin-C", "gene_name": "UBC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P37840-1", "protein_name": "Alpha-synuclein", "gene_name": "SNCA", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P98160", "url": "https://www.uniprot.org/uniprotkb/P98160" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.14567678", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 80 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "C-terminal and heparin-binding domains of collagenic tail subunit are both essential for anchoring acetylcholinesterase at the synapse.", "journal": "J. Biol. Chem.", "date": "2004", "authors": "Kimbell Lewis M, Ohno Kinji, Engel Andrew G, Rotundo Richard L", "reference": { "type": "PubMed", "id": "14702351", "url": "https://pubmed.ncbi.nlm.nih.gov/14702351" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P98160-1", "protein_name": "Basement membrane-specific heparan sulfate proteoglycan core protein", "gene_name": "HSPG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y215-1", "protein_name": "Acetylcholinesterase collagenic tail peptide", "gene_name": "COLQ", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P98160", "url": "https://www.uniprot.org/uniprotkb/P98160" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.14702351", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Neurite outgrowth by the alternatively spliced region of human tenascin-C is mediated by neuronal alpha7beta1 integrin.", "journal": "The Journal of neuroscience : the official journal of the Society for Neuroscience", "date": "2004", "authors": "Mercado ML, Nur-e-Kamal A, Liu HY, Gross SR, Movahed R, Meiners S", "reference": { "type": "PubMed", "id": "14715956", "url": "https://pubmed.ncbi.nlm.nih.gov/14715956" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P98160-1", "protein_name": "Basement membrane-specific heparan sulfate proteoglycan core protein", "gene_name": "HSPG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51884-1", "protein_name": "Lumican", "gene_name": "LUM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02452-1", "protein_name": "Collagen alpha-1(I) chain", "gene_name": "COL1A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18084-1", "protein_name": "Integrin beta-5", "gene_name": "ITGB5", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00468-1", "protein_name": "Agrin", "gene_name": "AGRN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02751-15", "protein_name": "Fibronectin", "gene_name": "FN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P21810-1", "protein_name": "Biglycan", "gene_name": "BGN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92752-1", "protein_name": "Tenascin-R", "gene_name": "TNR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQP3-1", "protein_name": "Tenascin-N", "gene_name": "TNN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53420-1", "protein_name": "Collagen alpha-4(IV) chain", "gene_name": "COL4A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q06828-1", "protein_name": "Fibromodulin", "gene_name": "FMOD", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75096-1", "protein_name": "Low-density lipoprotein receptor-related protein 4", "gene_name": "LRP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10915-1", "protein_name": "Hyaluronan and proteoglycan link protein 1", "gene_name": "HAPLN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16112-1", "protein_name": "Aggrecan core protein", "gene_name": "ACAN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P21815-1", "protein_name": "Integrin-binding sialoprotein", "gene_name": "IBSP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49747-1", "protein_name": "Cartilage oligomeric matrix protein", "gene_name": "COMP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXN1-1", "protein_name": "Asporin", "gene_name": "ASPN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12110-1", "protein_name": "Collagen alpha-2(VI) chain", "gene_name": "COL6A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14031-1", "protein_name": "Collagen alpha-6(IV) chain", "gene_name": "COL4A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20908-1", "protein_name": "Collagen alpha-1(V) chain", "gene_name": "COL5A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02462-1", "protein_name": "Collagen alpha-1(IV) chain", "gene_name": "COL4A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08572-1", "protein_name": "Collagen alpha-2(IV) chain", "gene_name": "COL4A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20849-1", "protein_name": "Collagen alpha-1(IX) chain", "gene_name": "COL9A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25940-1", "protein_name": "Collagen alpha-3(V) chain", "gene_name": "COL5A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01955-1", "protein_name": "Collagen alpha-3(IV) chain", "gene_name": "COL4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14118-1", "protein_name": "Dystroglycan 1", "gene_name": "DAG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07942-1", "protein_name": "Laminin subunit beta-1", "gene_name": "LAMB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24043-1", "protein_name": "Laminin subunit alpha-2", "gene_name": "LAMA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25391-1", "protein_name": "Laminin subunit alpha-1", "gene_name": "LAMA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11047-1", "protein_name": "Laminin subunit gamma-1", "gene_name": "LAMC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10600-1", "protein_name": "Transforming growth factor beta-3 proprotein", "gene_name": "TGFB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13683-1", "protein_name": "Integrin alpha-7", "gene_name": "ITGA7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16787-2", "protein_name": "Laminin subunit alpha-3", "gene_name": "LAMA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18564-1", "protein_name": "Integrin beta-6", "gene_name": "ITGB6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16363-1", "protein_name": "Laminin subunit alpha-4", "gene_name": "LAMA4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15230-1", "protein_name": "Laminin subunit alpha-5", "gene_name": "LAMA5", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95460-1", "protein_name": "Matrilin-4", "gene_name": "MATN4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08514-1", "protein_name": "Integrin alpha-IIb", "gene_name": "ITGA2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06756-1", "protein_name": "Integrin alpha-V", "gene_name": "ITGAV", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53708-1", "protein_name": "Integrin alpha-8", "gene_name": "ITGA8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P21941-1", "protein_name": "Matrilin-1", "gene_name": "MATN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05556-1", "protein_name": "Integrin beta-1", "gene_name": "ITGB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02461-1", "protein_name": "Collagen alpha-1(III) chain", "gene_name": "COL3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29400-1", "protein_name": "Collagen alpha-5(IV) chain", "gene_name": "COL4A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14055-1", "protein_name": "Collagen alpha-2(IX) chain", "gene_name": "COL9A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09486-1", "protein_name": "SPARC", "gene_name": "SPARC", "tax_name": "Human" }, { "uniprot_canonical_ac": "A8TX70-1", "protein_name": "Collagen alpha-5(VI) chain", "gene_name": "COL6A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05997-1", "protein_name": "Collagen alpha-2(V) chain", "gene_name": "COL5A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "A6NMZ7-1", "protein_name": "Collagen alpha-6(VI) chain", "gene_name": "COL6A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12111-1", "protein_name": "Collagen alpha-3(VI) chain", "gene_name": "COL6A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08123-1", "protein_name": "Collagen alpha-2(I) chain", "gene_name": "COL1A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12109-1", "protein_name": "Collagen alpha-1(VI) chain", "gene_name": "COL6A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02458-2", "protein_name": "Collagen alpha-1(II) chain", "gene_name": "COL2A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14050-1", "protein_name": "Collagen alpha-3(IX) chain", "gene_name": "COL9A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05106-1", "protein_name": "Integrin beta-3", "gene_name": "ITGB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13611-1", "protein_name": "Versican core protein", "gene_name": "VCAN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07585-1", "protein_name": "Decorin", "gene_name": "DCN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04004-1", "protein_name": "Vitronectin", "gene_name": "VTN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NZW4-1", "protein_name": "Dentin sialophosphoprotein", "gene_name": "DSPP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13797-1", "protein_name": "Integrin alpha-9", "gene_name": "ITGA9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96GW7-1", "protein_name": "Brevican core protein", "gene_name": "BCAN", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15146-1", "protein_name": "Muscle, skeletal receptor tyrosine-protein kinase", "gene_name": "MUSK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13332-1", "protein_name": "Receptor-type tyrosine-protein phosphatase S", "gene_name": "PTPRS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20702-1", "protein_name": "Integrin alpha-X", "gene_name": "ITGAX", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17301-1", "protein_name": "Integrin alpha-2", "gene_name": "ITGA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15232-1", "protein_name": "Matrilin-3", "gene_name": "MATN3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22105-3", "protein_name": "Tenascin-X", "gene_name": "TNXB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13591-2", "protein_name": "Neural cell adhesion molecule 1", "gene_name": "NCAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13316-1", "protein_name": "Dentin matrix acidic phosphoprotein 1", "gene_name": "DMP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55268-1", "protein_name": "Laminin subunit beta-2", "gene_name": "LAMB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24821-1", "protein_name": "Tenascin", "gene_name": "TNC", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14594-1", "protein_name": "Neurocan core protein", "gene_name": "NCAN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05067-1", "protein_name": "Amyloid-beta precursor protein", "gene_name": "APP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01137-1", "protein_name": "Transforming growth factor beta-1 proprotein", "gene_name": "TGFB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61812-1", "protein_name": "Transforming growth factor beta-2 proprotein", "gene_name": "TGFB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05121-1", "protein_name": "Plasminogen activator inhibitor 1", "gene_name": "SERPINE1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P98160", "url": "https://www.uniprot.org/uniprotkb/P98160" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.14715956", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 76 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Specific in vivo phosphorylation sites determine the assembly dynamics of vimentin intermediate filaments.", "journal": "Journal of cell science", "date": "2004", "authors": "Eriksson JE, He T, Trejo-Skalli AV, Harmala-Brasken AS, Hellman J, Chou YH, Goldman RD", "reference": { "type": "PubMed", "id": "14762106", "url": "https://pubmed.ncbi.nlm.nih.gov/14762106" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P98160-1", "protein_name": "Basement membrane-specific heparan sulfate proteoglycan core protein", "gene_name": "HSPG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13247-1", "protein_name": "Serine/arginine-rich splicing factor 6", "gene_name": "SRSF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16629-1", "protein_name": "Serine/arginine-rich splicing factor 7", "gene_name": "SRSF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13984-1", "protein_name": "General transcription factor IIF subunit 2", "gene_name": "GTF2F2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63162-1", "protein_name": "Small nuclear ribonucleoprotein-associated protein N", "gene_name": "SNRPN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30876-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB2", "gene_name": "POLR2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61218-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC2", "gene_name": "POLR2F", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75533-1", "protein_name": "Splicing factor 3B subunit 1", "gene_name": "SF3B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75056-1", "protein_name": "Syndecan-3", "gene_name": "SDC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15514-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB4", "gene_name": "POLR2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3B4-1", "protein_name": "Splicing factor 3B subunit 6", "gene_name": "SF3B6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00734-1", "protein_name": "Prothrombin", "gene_name": "F2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0L4-1", "protein_name": "Cleavage stimulation factor subunit 2 tau variant", "gene_name": "CSTF2T", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51955-1", "protein_name": "Serine/threonine-protein kinase Nek2", "gene_name": "NEK2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86V81-1", "protein_name": "THO complex subunit 4", "gene_name": "ALYREF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07157-1", "protein_name": "Tight junction protein 1", "gene_name": "TJP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00468-1", "protein_name": "Agrin", "gene_name": "AGRN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24928-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB1", "gene_name": "POLR2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13554-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit beta", "gene_name": "CAMK2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99459-1", "protein_name": "Cell division cycle 5-like protein", "gene_name": "CDC5L", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60306-1", "protein_name": "RNA helicase aquarius", "gene_name": "AQR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05519-1", "protein_name": "Serine/arginine-rich splicing factor 11", "gene_name": "SRSF11", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94906-1", "protein_name": "Pre-mRNA-processing factor 6", "gene_name": "PRPF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNP9-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase E", "gene_name": "PPIE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9ULR0-3", "protein_name": "Pre-mRNA-splicing factor ISY1 homolog", "gene_name": "ISY1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCS7-1", "protein_name": "Pre-mRNA-splicing factor SYF1", "gene_name": "XAB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHY1-1", "protein_name": "Nuclear receptor-binding protein", "gene_name": "NRBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07020-1", "protein_name": "Large ribosomal subunit protein eL18", "gene_name": "RPL18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYB3-1", "protein_name": "Serine/arginine repetitive matrix protein 1", "gene_name": "SRRM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UMS4-1", "protein_name": "Pre-mRNA-processing factor 19", "gene_name": "PRPF19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07955-1", "protein_name": "Serine/arginine-rich splicing factor 1", "gene_name": "SRSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83876-1", "protein_name": "Thioredoxin-like protein 4A", "gene_name": "TXNL4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43660-1", "protein_name": "Pleiotropic regulator 1", "gene_name": "PLRG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01130-1", "protein_name": "Serine/arginine-rich splicing factor 2", "gene_name": "SRSF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q10570-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 1", "gene_name": "CPSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6UX04-1", "protein_name": "Spliceosome-associated protein CWC27 homolog", "gene_name": "CWC27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKF6-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 3", "gene_name": "CPSF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75937-1", "protein_name": "DnaJ homolog subfamily C member 8", "gene_name": "DNAJC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17542-1", "protein_name": "T-cell acute lymphocytic leukemia protein 1", "gene_name": "TAL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60828-1", "protein_name": "Polyglutamine-binding protein 1", "gene_name": "PQBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51654-1", "protein_name": "Glypican-3", "gene_name": "GPC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15029-1", "protein_name": "116 kDa U5 small nuclear ribonucleoprotein component", "gene_name": "EFTUD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12874-1", "protein_name": "Splicing factor 3A subunit 3", "gene_name": "SF3A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75940-1", "protein_name": "Survival of motor neuron-related-splicing factor 30", "gene_name": "SMNDC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14678-1", "protein_name": "Small nuclear ribonucleoprotein-associated proteins B and B'", "gene_name": "SNRPB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQM7-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit alpha", "gene_name": "CAMK2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2W2-1", "protein_name": "WW domain-binding protein 11", "gene_name": "WBP11", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75643-1", "protein_name": "U5 small nuclear ribonucleoprotein 200 kDa helicase", "gene_name": "SNRNP200", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09651-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A1", "gene_name": "HNRNPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94913-1", "protein_name": "Pre-mRNA cleavage complex 2 protein Pcf11", "gene_name": "PCF11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84103-1", "protein_name": "Serine/arginine-rich splicing factor 3", "gene_name": "SRSF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52435-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB11-a", "gene_name": "POLR2J", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36954-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB9", "gene_name": "POLR2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQ35-1", "protein_name": "Serine/arginine repetitive matrix protein 2", "gene_name": "SRRM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19388-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35269-1", "protein_name": "General transcription factor IIF subunit 1", "gene_name": "GTF2F1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53803-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52434-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC3", "gene_name": "POLR2H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62487-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB7", "gene_name": "POLR2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13151-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A0", "gene_name": "HNRNPA0", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18827-1", "protein_name": "Syndecan-1", "gene_name": "SDC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09661-1", "protein_name": "U2 small nuclear ribonucleoprotein A'", "gene_name": "SNRPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BWJ5-1", "protein_name": "Splicing factor 3B subunit 5", "gene_name": "SF3B5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WYA6-1", "protein_name": "Beta-catenin-like protein 1", "gene_name": "CTNNBL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q00839-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein U", "gene_name": "HNRNPU", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95639-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 4", "gene_name": "CPSF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7L014-1", "protein_name": "Probable ATP-dependent RNA helicase DDX46", "gene_name": "DDX46", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62875-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC5", "gene_name": "POLR2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUJ2-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein U-like protein 1", "gene_name": "HNRNPUL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19387-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHX1-1", "protein_name": "Poly(U)-binding-splicing factor PUF60", "gene_name": "PUF60", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41223-1", "protein_name": "Protein BUD31 homolog", "gene_name": "BUD31", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZJ0-1", "protein_name": "Crooked neck-like protein 1", "gene_name": "CRNKL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUM4-1", "protein_name": "Programmed cell death 6-interacting protein", "gene_name": "PDCD6IP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IX12-1", "protein_name": "Cell division cycle and apoptosis regulator protein 1", "gene_name": "CCAR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38919-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "EIF4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWX8-1", "protein_name": "Calcium homeostasis endoplasmic reticulum protein", "gene_name": "CHERP", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95400-1", "protein_name": "CD2 antigen cytoplasmic tail-binding protein 2", "gene_name": "CD2BP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15287-1", "protein_name": "RNA-binding protein with serine-rich domain 1", "gene_name": "RNPS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62316-1", "protein_name": "Small nuclear ribonucleoprotein Sm D2", "gene_name": "SNRPD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17844-1", "protein_name": "Probable ATP-dependent RNA helicase DDX5", "gene_name": "DDX5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52756-1", "protein_name": "RNA-binding protein 5", "gene_name": "RBM5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62308-1", "protein_name": "Small nuclear ribonucleoprotein G", "gene_name": "SNRPG", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12996-1", "protein_name": "Cleavage stimulation factor subunit 3", "gene_name": "CSTF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43143-1", "protein_name": "ATP-dependent RNA helicase DHX15", "gene_name": "DHX15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWZ8-1", "protein_name": "SURP and G-patch domain-containing protein 1", "gene_name": "SUGP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31431-1", "protein_name": "Syndecan-4", "gene_name": "SDC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00206-1", "protein_name": "Toll-like receptor 4", "gene_name": "TLR4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6Y9-1", "protein_name": "Lymphocyte antigen 96", "gene_name": "LY96", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y625-1", "protein_name": "Glypican-6", "gene_name": "GPC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92733-1", "protein_name": "Proline-rich protein PRCC", "gene_name": "PRCC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2H8-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 3", "gene_name": "PPIL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08170-1", "protein_name": "Serine/arginine-rich splicing factor 4", "gene_name": "SRSF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N158-1", "protein_name": "Glypican-2", "gene_name": "GPC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08579-1", "protein_name": "U2 small nuclear ribonucleoprotein B''", "gene_name": "SNRPB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HAV7-1", "protein_name": "GrpE protein homolog 1, mitochondrial", "gene_name": "GRPEL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51003-1", "protein_name": "Poly(A) polymerase alpha", "gene_name": "PAPOLA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15366-1", "protein_name": "Poly(rC)-binding protein 2", "gene_name": "PCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26599-3", "protein_name": "Polypyrimidine tract-binding protein 1", "gene_name": "PTBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15365-1", "protein_name": "Poly(rC)-binding protein 1", "gene_name": "PCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P2Q9-1", "protein_name": "Pre-mRNA-processing-splicing factor 8", "gene_name": "PRPF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35222-1", "protein_name": "Catenin beta-1", "gene_name": "CTNNB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07910-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins C1/C2", "gene_name": "HNRNPC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08670-1", "protein_name": "Vimentin", "gene_name": "VIM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63172-1", "protein_name": "Dynein light chain Tctex-type 1", "gene_name": "DYNLT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0C0S8-1", "protein_name": "Histone H2A type 1", "gene_name": "H2AC11; H2AC13; H2AC15; H2AC16; H2AC17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11142-1", "protein_name": "Heat shock cognate 71 kDa protein", "gene_name": "HSPA8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62805-1", "protein_name": "Histone H4", "gene_name": "H4C11; H4C12; H4C13; H4C14; H4C15; H4C16; H4C1; H4C2; H4C3; H4C4; H4C5; H4C6; H4C8; H4C9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68431-1", "protein_name": "Histone H3.1", "gene_name": "H3C10; H3C11; H3C12; H3C1; H3C2; H3C3; H3C4; H3C6; H3C7; H3C8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43390-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein R", "gene_name": "HNRNPR", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52597-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein F", "gene_name": "HNRNPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63279-1", "protein_name": "SUMO-conjugating enzyme UBC9", "gene_name": "UBE2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08211-1", "protein_name": "ATP-dependent RNA helicase A", "gene_name": "DHX9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52272-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein M", "gene_name": "HNRNPM", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16778-1", "protein_name": "Histone H2B type 2-E", "gene_name": "H2BC21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01081-1", "protein_name": "Splicing factor U2AF 35 kDa subunit", "gene_name": "U2AF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62807-1", "protein_name": "Histone H2B type 1-C/E/F/G/I", "gene_name": "H2BC10; H2BC4; H2BC6; H2BC7; H2BC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26368-1", "protein_name": "Splicing factor U2AF 65 kDa subunit", "gene_name": "U2AF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75934-1", "protein_name": "Pre-mRNA-splicing factor SPF27", "gene_name": "BCAS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N684-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 7", "gene_name": "CPSF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62306-1", "protein_name": "Small nuclear ribonucleoprotein F", "gene_name": "SNRPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92797-1", "protein_name": "Symplekin", "gene_name": "SYMPK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WTW3-1", "protein_name": "Conserved oligomeric Golgi complex subunit 1", "gene_name": "COG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92538-4", "protein_name": "Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1", "gene_name": "GBF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P2I0-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 2", "gene_name": "CPSF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3C6-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 1", "gene_name": "PPIL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14780-1", "protein_name": "Matrix metalloproteinase-9", "gene_name": "MMP9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P34741-1", "protein_name": "Syndecan-2", "gene_name": "SDC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49327-1", "protein_name": "Fatty acid synthase", "gene_name": "FASN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NXE8-1", "protein_name": "Pre-mRNA-splicing factor CWC25 homolog", "gene_name": "CWC25", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P013-1", "protein_name": "Spliceosome-associated protein CWC15 homolog", "gene_name": "CWC15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62318-1", "protein_name": "Small nuclear ribonucleoprotein Sm D3", "gene_name": "SNRPD3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCG8-1", "protein_name": "Pre-mRNA-splicing factor CWC22 homolog", "gene_name": "CWC22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78333-1", "protein_name": "Glypican-5", "gene_name": "GPC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35052-1", "protein_name": "Glypican-1", "gene_name": "GPC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05048-1", "protein_name": "Cleavage stimulation factor subunit 1", "gene_name": "CSTF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13557-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit delta", "gene_name": "CAMK2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33240-1", "protein_name": "Cleavage stimulation factor subunit 2", "gene_name": "CSTF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15428-1", "protein_name": "Splicing factor 3A subunit 2", "gene_name": "SF3A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15427-1", "protein_name": "Splicing factor 3B subunit 4", "gene_name": "SF3B4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71DI3-1", "protein_name": "Histone H3.2", "gene_name": "H3C13; H3C14; H3C15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y679-2", "protein_name": "Lipid droplet-regulating VLDL assembly factor AUP1", "gene_name": "AUP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67809-1", "protein_name": "Y-box-binding protein 1", "gene_name": "YBX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13435-1", "protein_name": "Splicing factor 3B subunit 2", "gene_name": "SF3B2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUQ8-1", "protein_name": "Probable ATP-dependent RNA helicase DDX23", "gene_name": "DDX23", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92620-1", "protein_name": "Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16", "gene_name": "DHX38", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60231-1", "protein_name": "Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16", "gene_name": "DHX16", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15459-1", "protein_name": "Splicing factor 3A subunit 1", "gene_name": "SF3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5QNW6-1", "protein_name": "Histone H2B type 2-F", "gene_name": "H2BC18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62304-1", "protein_name": "Small nuclear ribonucleoprotein E", "gene_name": "SNRPE", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33778-1", "protein_name": "Histone H2B type 1-B", "gene_name": "H2BC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P58876-1", "protein_name": "Histone H2B type 1-D", "gene_name": "H2BC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A08-1", "protein_name": "Histone H2B type 1-A", "gene_name": "H2BC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23527-1", "protein_name": "Histone H2B type 1-O", "gene_name": "H2BC17", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13242-1", "protein_name": "Serine/arginine-rich splicing factor 9", "gene_name": "SRSF9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86U42-1", "protein_name": "Polyadenylate-binding protein 2", "gene_name": "PABPN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7RTV0-1", "protein_name": "PHD finger-like domain-containing protein 5A", "gene_name": "PHF5A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IXY8-1", "protein_name": "Probable inactive peptidyl-prolyl cis-trans isomerase-like 6", "gene_name": "PPIL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUA2-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 4", "gene_name": "PPIL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51991-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A3", "gene_name": "HNRNPA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14103-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein D0", "gene_name": "HNRNPD", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31943-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein H", "gene_name": "HNRNPH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55795-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein H2", "gene_name": "HNRNPH2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13555-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit gamma", "gene_name": "CAMK2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXP5-1", "protein_name": "Serrate RNA effector molecule homolog", "gene_name": "SRRT", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60814-1", "protein_name": "Histone H2B type 1-K", "gene_name": "H2BC12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93077-1", "protein_name": "Histone H2A type 1-C", "gene_name": "H2AC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93079-1", "protein_name": "Histone H2B type 1-H", "gene_name": "H2BC9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96KK5-1", "protein_name": "Histone H2A type 1-H", "gene_name": "H2AC12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99879-1", "protein_name": "Histone H2B type 1-M", "gene_name": "H2BC14", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15042-1", "protein_name": "U2 snRNP-associated SURP motif-containing protein", "gene_name": "U2SURP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96DI7-1", "protein_name": "U5 small nuclear ribonucleoprotein 40 kDa protein", "gene_name": "SNRNP40", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60508-1", "protein_name": "Pre-mRNA-processing factor 17", "gene_name": "CDC40", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13243-1", "protein_name": "Serine/arginine-rich splicing factor 5", "gene_name": "SRSF5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WU68-1", "protein_name": "Splicing factor U2AF 26 kDa subunit", "gene_name": "U2AF1L4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15393-1", "protein_name": "Splicing factor 3B subunit 3", "gene_name": "SF3B3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96I25-1", "protein_name": "Splicing factor 45", "gene_name": "RBM17", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43809-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 5", "gene_name": "NUDT21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92917-1", "protein_name": "G-patch domain and KOW motifs-containing protein", "gene_name": "GPKOW", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92989-1", "protein_name": "Polyribonucleotide 5'-hydroxyl-kinase Clp1", "gene_name": "CLP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86XP3-1", "protein_name": "ATP-dependent RNA helicase DDX42", "gene_name": "DDX42", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13573-1", "protein_name": "SNW domain-containing protein 1", "gene_name": "SNW1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NW64-1", "protein_name": "Pre-mRNA-splicing factor RBM22", "gene_name": "RBM22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35637-1", "protein_name": "RNA-binding protein FUS", "gene_name": "FUS", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6UN15-1", "protein_name": "Pre-mRNA 3'-end-processing factor FIP1", "gene_name": "FIP1L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75487-1", "protein_name": "Glypican-4", "gene_name": "GPC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62314-1", "protein_name": "Small nuclear ribonucleoprotein Sm D1", "gene_name": "SNRPD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22626-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins A2/B1", "gene_name": "HNRNPA2B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14866-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein L", "gene_name": "HNRNPL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04908-1", "protein_name": "Histone H2A type 1-B/E", "gene_name": "H2AC4; H2AC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06899-1", "protein_name": "Histone H2B type 1-J", "gene_name": "H2BC11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20671-1", "protein_name": "Histone H2A type 1-D", "gene_name": "H2AC7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16777-1", "protein_name": "Histone H2A type 2-C", "gene_name": "H2AC20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6FI13-1", "protein_name": "Histone H2A type 2-A", "gene_name": "H2AC18; H2AC19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7L7L0-1", "protein_name": "Histone H2A type 3", "gene_name": "H2AC25", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IUE6-1", "protein_name": "Histone H2A type 2-B", "gene_name": "H2AC21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N257-1", "protein_name": "Histone H2B type 3-B", "gene_name": "H2BC26", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96QV6-1", "protein_name": "Histone H2A type 1-A", "gene_name": "H2AC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99877-1", "protein_name": "Histone H2B type 1-N", "gene_name": "H2BC15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99878-1", "protein_name": "Histone H2A type 1-J", "gene_name": "H2AC14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99880-1", "protein_name": "Histone H2B type 1-L", "gene_name": "H2BC13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12926-1", "protein_name": "ELAV-like protein 2", "gene_name": "ELAVL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15717-1", "protein_name": "ELAV-like protein 1", "gene_name": "ELAVL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9C0J8-1", "protein_name": "pre-mRNA 3' end processing protein WDR33", "gene_name": "WDR33", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02647-1", "protein_name": "Apolipoprotein A-I", "gene_name": "APOA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38159-1", "protein_name": "RNA-binding motif protein, X chromosome", "gene_name": "RBMX", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40855-1", "protein_name": "Peroxisomal biogenesis factor 19", "gene_name": "PEX19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61978-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein K", "gene_name": "HNRNPK", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P98160", "url": "https://www.uniprot.org/uniprotkb/P98160" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 10, "end_pos": 10, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PKC", "evidence": [ { "database": "UniProtKB", "id": "P08670", "url": "https://www.uniprot.org/uniprotkb/P08670" }, { "database": "iPTMnet", "id": "P08670", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08670" }, { "database": "PubMed", "id": "14762106", "url": "https://pubmed.ncbi.nlm.nih.gov/14762106" } ], "site_lbl": "Ser10", "uniprot_canonical_ac": "P08670-1" }, { "start_pos": 39, "end_pos": 39, "kinase_uniprot_canonical_ac": "P17612-1", "kinase_gene_name": "PRKACA", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P08670", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08670" }, { "database": "PubMed", "id": "11895474", "url": "https://pubmed.ncbi.nlm.nih.gov/11895474" }, { "database": "PubMed", "id": "17287340", "url": "https://pubmed.ncbi.nlm.nih.gov/17287340" }, { "database": "PubMed", "id": "18669648", "url": "https://pubmed.ncbi.nlm.nih.gov/18669648" }, { "database": "PubMed", "id": "18767875", "url": "https://pubmed.ncbi.nlm.nih.gov/18767875" }, { "database": "PubMed", "id": "19007248", "url": "https://pubmed.ncbi.nlm.nih.gov/19007248" }, { "database": "PubMed", "id": "19691289", "url": "https://pubmed.ncbi.nlm.nih.gov/19691289" }, { "database": "PubMed", "id": "20058876", "url": "https://pubmed.ncbi.nlm.nih.gov/20058876" }, { "database": "PubMed", "id": "20068231", "url": "https://pubmed.ncbi.nlm.nih.gov/20068231" }, { "database": "PubMed", "id": "2500966", "url": "https://pubmed.ncbi.nlm.nih.gov/2500966" }, { "database": "PubMed", "id": "14762106", "url": "https://pubmed.ncbi.nlm.nih.gov/14762106" } ], "site_lbl": "Ser39", "uniprot_canonical_ac": "P08670-1" }, { "start_pos": 39, "end_pos": 39, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by CaMK2, PKA, PKC and ROCK2", "evidence": [ { "database": "UniProtKB", "id": "P08670", "url": "https://www.uniprot.org/uniprotkb/P08670" }, { "database": "IEDB", "id": "P08670", "url": "https://www.iedb.org/epitope/P08670" }, { "database": "iPTMnet", "id": "P08670", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08670" }, { "database": "PubMed", "id": "32387766", "url": "https://pubmed.ncbi.nlm.nih.gov/32387766" }, { "database": "PubMed", "id": "20856200", "url": "https://pubmed.ncbi.nlm.nih.gov/20856200" }, { "database": "PubMed", "id": "21969470", "url": "https://pubmed.ncbi.nlm.nih.gov/21969470" }, { "database": "PubMed", "id": "30696956", "url": "https://pubmed.ncbi.nlm.nih.gov/30696956" }, { "database": "PubMed", "id": "31862882", "url": "https://pubmed.ncbi.nlm.nih.gov/31862882" }, { "database": "PubMed", "id": "32047143", "url": "https://pubmed.ncbi.nlm.nih.gov/32047143" }, { "database": "PubMed", "id": "32389644", "url": "https://pubmed.ncbi.nlm.nih.gov/32389644" }, { "database": "PubMed", "id": "33050149", "url": "https://pubmed.ncbi.nlm.nih.gov/33050149" }, { "database": "PubMed", "id": "18669648", "url": "https://pubmed.ncbi.nlm.nih.gov/18669648" }, { "database": "PubMed", "id": "23186163", "url": "https://pubmed.ncbi.nlm.nih.gov/23186163" }, { "database": "PubMed", "id": "24275569", "url": "https://pubmed.ncbi.nlm.nih.gov/24275569" }, { "database": "PubMed", "id": "14762106", "url": "https://pubmed.ncbi.nlm.nih.gov/14762106" } ], "site_lbl": "Ser39", "uniprot_canonical_ac": "P08670-1" }, { "start_pos": 420, "end_pos": 420, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P08670", "url": "https://www.uniprot.org/uniprotkb/P08670" }, { "database": "PubMed", "id": "20068231", "url": "https://pubmed.ncbi.nlm.nih.gov/20068231" }, { "database": "PubMed", "id": "14762106", "url": "https://pubmed.ncbi.nlm.nih.gov/14762106" }, { "database": "PubMed", "id": "23186163", "url": "https://pubmed.ncbi.nlm.nih.gov/23186163" }, { "database": "iPTMnet", "id": "P08670", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08670" }, { "database": "PubMed", "id": "18578522", "url": "https://pubmed.ncbi.nlm.nih.gov/18578522" }, { "database": "PubMed", "id": "18669648", "url": "https://pubmed.ncbi.nlm.nih.gov/18669648" }, { "database": "PubMed", "id": "19651622", "url": "https://pubmed.ncbi.nlm.nih.gov/19651622" }, { "database": "PubMed", "id": "20058876", "url": "https://pubmed.ncbi.nlm.nih.gov/20058876" }, { "database": "PubMed", "id": "20166139", "url": "https://pubmed.ncbi.nlm.nih.gov/20166139" }, { "database": "PubMed", "id": "20230923", "url": "https://pubmed.ncbi.nlm.nih.gov/20230923" } ], "site_lbl": "Ser420", "uniprot_canonical_ac": "P08670-1" }, { "start_pos": 42, "end_pos": 42, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PKC", "evidence": [ { "database": "UniProtKB", "id": "P08670", "url": "https://www.uniprot.org/uniprotkb/P08670" }, { "database": "iPTMnet", "id": "P08670", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08670" }, { "database": "PubMed", "id": "18669648", "url": "https://pubmed.ncbi.nlm.nih.gov/18669648" }, { "database": "PubMed", "id": "20068231", "url": "https://pubmed.ncbi.nlm.nih.gov/20068231" }, { "database": "PubMed", "id": "23186163", "url": "https://pubmed.ncbi.nlm.nih.gov/23186163" }, { "database": "PubMed", "id": "14762106", "url": "https://pubmed.ncbi.nlm.nih.gov/14762106" } ], "site_lbl": "Ser42", "uniprot_canonical_ac": "P08670-1" }, { "start_pos": 430, "end_pos": 430, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P08670", "url": "https://www.uniprot.org/uniprotkb/P08670" }, { "database": "PubMed", "id": "24275569", "url": "https://pubmed.ncbi.nlm.nih.gov/24275569" }, { "database": "PubMed", "id": "20068231", "url": "https://pubmed.ncbi.nlm.nih.gov/20068231" }, { "database": "PubMed", "id": "14762106", "url": "https://pubmed.ncbi.nlm.nih.gov/14762106" }, { "database": "PubMed", "id": "23186163", "url": "https://pubmed.ncbi.nlm.nih.gov/23186163" }, { "database": "iPTMnet", "id": "P08670", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08670" }, { "database": "PubMed", "id": "17081983", "url": "https://pubmed.ncbi.nlm.nih.gov/17081983" }, { "database": "PubMed", "id": "17287340", "url": "https://pubmed.ncbi.nlm.nih.gov/17287340" }, { "database": "PubMed", "id": "18578522", "url": "https://pubmed.ncbi.nlm.nih.gov/18578522" }, { "database": "PubMed", "id": "18669648", "url": "https://pubmed.ncbi.nlm.nih.gov/18669648" }, { "database": "PubMed", "id": "19691289", "url": "https://pubmed.ncbi.nlm.nih.gov/19691289" } ], "site_lbl": "Ser430", "uniprot_canonical_ac": "P08670-1" }, { "start_pos": 458, "end_pos": 458, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "P08670", "url": "https://www.uniprot.org/uniprotkb/P08670" }, { "database": "PubMed", "id": "14762106", "url": "https://pubmed.ncbi.nlm.nih.gov/14762106" }, { "database": "iPTMnet", "id": "P08670", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08670" }, { "database": "PubMed", "id": "17081983", "url": "https://pubmed.ncbi.nlm.nih.gov/17081983" }, { "database": "PubMed", "id": "17287340", "url": "https://pubmed.ncbi.nlm.nih.gov/17287340" }, { "database": "PubMed", "id": "18767875", "url": "https://pubmed.ncbi.nlm.nih.gov/18767875" }, { "database": "PubMed", "id": "19651622", "url": "https://pubmed.ncbi.nlm.nih.gov/19651622" }, { "database": "PubMed", "id": "19664995", "url": "https://pubmed.ncbi.nlm.nih.gov/19664995" }, { "database": "PubMed", "id": "20068231", "url": "https://pubmed.ncbi.nlm.nih.gov/20068231" } ], "site_lbl": "Thr458", "uniprot_canonical_ac": "P08670-1" }, { "start_pos": 459, "end_pos": 459, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P08670", "url": "https://www.uniprot.org/uniprotkb/P08670" }, { "database": "PubMed", "id": "23186163", "url": "https://pubmed.ncbi.nlm.nih.gov/23186163" }, { "database": "PubMed", "id": "18669648", "url": "https://pubmed.ncbi.nlm.nih.gov/18669648" }, { "database": "PubMed", "id": "21406692", "url": "https://pubmed.ncbi.nlm.nih.gov/21406692" }, { "database": "PubMed", "id": "20068231", "url": "https://pubmed.ncbi.nlm.nih.gov/20068231" }, { "database": "PubMed", "id": "14762106", "url": "https://pubmed.ncbi.nlm.nih.gov/14762106" }, { "database": "iPTMnet", "id": "P08670", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08670" }, { "database": "PubMed", "id": "17287340", "url": "https://pubmed.ncbi.nlm.nih.gov/17287340" }, { "database": "PubMed", "id": "17322306", "url": "https://pubmed.ncbi.nlm.nih.gov/17322306" }, { "database": "PubMed", "id": "17924679", "url": "https://pubmed.ncbi.nlm.nih.gov/17924679" }, { "database": "PubMed", "id": "18691976", "url": "https://pubmed.ncbi.nlm.nih.gov/18691976" }, { "database": "PubMed", "id": "18767875", "url": "https://pubmed.ncbi.nlm.nih.gov/18767875" }, { "database": "PubMed", "id": "19007248", "url": "https://pubmed.ncbi.nlm.nih.gov/19007248" }, { "database": "PubMed", "id": "19413330", "url": "https://pubmed.ncbi.nlm.nih.gov/19413330" }, { "database": "PubMed", "id": "19415658", "url": "https://pubmed.ncbi.nlm.nih.gov/19415658" }, { "database": "PubMed", "id": "19651622", "url": "https://pubmed.ncbi.nlm.nih.gov/19651622" }, { "database": "PubMed", "id": "19664995", "url": "https://pubmed.ncbi.nlm.nih.gov/19664995" }, { "database": "PubMed", "id": "20166139", "url": "https://pubmed.ncbi.nlm.nih.gov/20166139" }, { "database": "PubMed", "id": "24282534", "url": "https://pubmed.ncbi.nlm.nih.gov/24282534" } ], "site_lbl": "Ser459", "uniprot_canonical_ac": "P08670-1" }, { "start_pos": 5, "end_pos": 5, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P08670", "url": "https://www.uniprot.org/uniprotkb/P08670" }, { "database": "PubMed", "id": "14762106", "url": "https://pubmed.ncbi.nlm.nih.gov/14762106" }, { "database": "PubMed", "id": "18669648", "url": "https://pubmed.ncbi.nlm.nih.gov/18669648" }, { "database": "iPTMnet", "id": "P08670", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08670" }, { "database": "PubMed", "id": "20068231", "url": "https://pubmed.ncbi.nlm.nih.gov/20068231" } ], "site_lbl": "Ser5", "uniprot_canonical_ac": "P08670-1" }, { "start_pos": 72, "end_pos": 72, "kinase_uniprot_canonical_ac": "P17612-1", "kinase_gene_name": "PRKACA", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P08670", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08670" }, { "database": "PubMed", "id": "14762106", "url": "https://pubmed.ncbi.nlm.nih.gov/14762106" } ], "site_lbl": "Ser72", "uniprot_canonical_ac": "P08670-1" }, { "start_pos": 72, "end_pos": 72, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by AURKB and ROCK2", "evidence": [ { "database": "UniProtKB", "id": "P08670", "url": "https://www.uniprot.org/uniprotkb/P08670" }, { "database": "iPTMnet", "id": "P08670", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08670" }, { "database": "PubMed", "id": "11420699", "url": "https://pubmed.ncbi.nlm.nih.gov/11420699" }, { "database": "PubMed", "id": "12458200", "url": "https://pubmed.ncbi.nlm.nih.gov/12458200" }, { "database": "PubMed", "id": "12553669", "url": "https://pubmed.ncbi.nlm.nih.gov/12553669" }, { "database": "PubMed", "id": "15597762", "url": "https://pubmed.ncbi.nlm.nih.gov/15597762" }, { "database": "PubMed", "id": "15676024", "url": "https://pubmed.ncbi.nlm.nih.gov/15676024" }, { "database": "PubMed", "id": "21969470", "url": "https://pubmed.ncbi.nlm.nih.gov/21969470" }, { "database": "PubMed", "id": "30658903", "url": "https://pubmed.ncbi.nlm.nih.gov/30658903" }, { "database": "PubMed", "id": "30696956", "url": "https://pubmed.ncbi.nlm.nih.gov/30696956" }, { "database": "PubMed", "id": "31931758", "url": "https://pubmed.ncbi.nlm.nih.gov/31931758" }, { "database": "PubMed", "id": "32389644", "url": "https://pubmed.ncbi.nlm.nih.gov/32389644" }, { "database": "PubMed", "id": "33290258", "url": "https://pubmed.ncbi.nlm.nih.gov/33290258" }, { "database": "PubMed", "id": "14762106", "url": "https://pubmed.ncbi.nlm.nih.gov/14762106" }, { "database": "PubMed", "id": "18669648", "url": "https://pubmed.ncbi.nlm.nih.gov/18669648" } ], "site_lbl": "Ser72", "uniprot_canonical_ac": "P08670-1" }, { "start_pos": 73, "end_pos": 73, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P08670", "url": "https://www.uniprot.org/uniprotkb/P08670" }, { "database": "PubMed", "id": "20068231", "url": "https://pubmed.ncbi.nlm.nih.gov/20068231" }, { "database": "PubMed", "id": "14762106", "url": "https://pubmed.ncbi.nlm.nih.gov/14762106" }, { "database": "PubMed", "id": "18669648", "url": "https://pubmed.ncbi.nlm.nih.gov/18669648" }, { "database": "PubMed", "id": "23186163", "url": "https://pubmed.ncbi.nlm.nih.gov/23186163" }, { "database": "iPTMnet", "id": "P08670", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08670" }, { "database": "PubMed", "id": "30696956", "url": "https://pubmed.ncbi.nlm.nih.gov/30696956" }, { "database": "PubMed", "id": "31862882", "url": "https://pubmed.ncbi.nlm.nih.gov/31862882" } ], "site_lbl": "Ser73", "uniprot_canonical_ac": "P08670-1" }, { "start_pos": 7, "end_pos": 7, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PKA and PKC; alternate", "evidence": [ { "database": "UniProtKB", "id": "P08670", "url": "https://www.uniprot.org/uniprotkb/P08670" }, { "database": "IEDB", "id": "B0YJC4", "url": "https://www.iedb.org/epitope/B0YJC4" }, { "database": "iPTMnet", "id": "B0YJC4", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/B0YJC4" }, { "database": "PubMed", "id": "27869121", "url": "https://pubmed.ncbi.nlm.nih.gov/27869121" }, { "database": "iPTMnet", "id": "P08670", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08670" }, { "database": "PubMed", "id": "14762106", "url": "https://pubmed.ncbi.nlm.nih.gov/14762106" } ], "site_lbl": "Ser7", "uniprot_canonical_ac": "P08670-1" }, { "start_pos": 8, "end_pos": 8, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P08670", "url": "https://www.uniprot.org/uniprotkb/P08670" }, { "database": "PubMed", "id": "14762106", "url": "https://pubmed.ncbi.nlm.nih.gov/14762106" }, { "database": "iPTMnet", "id": "P08670", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08670" } ], "site_lbl": "Ser8", "uniprot_canonical_ac": "P08670-1" }, { "start_pos": 9, "end_pos": 9, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PKC", "evidence": [ { "database": "UniProtKB", "id": "P08670", "url": "https://www.uniprot.org/uniprotkb/P08670" }, { "database": "iPTMnet", "id": "P08670", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P08670" }, { "database": "PubMed", "id": "14762106", "url": "https://pubmed.ncbi.nlm.nih.gov/14762106" } ], "site_lbl": "Ser9", "uniprot_canonical_ac": "P08670-1" } ], "record_id": "pubmed.14762106", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 210 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 15 }, { "field": "total_sites", "count": 13 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "HtrA1 serine protease inhibits signaling mediated by Tgfbeta family proteins.", "journal": "Development (Cambridge, England)", "date": "2004", "authors": "Oka C, Tsujimoto R, Kajikawa M, Koshiba-Takeuchi K, Ina J, Yano M, Tsuchiya A, Ueta Y, Soma A, Kanda H, Matsumoto M, Kawaichi M", "reference": { "type": "PubMed", "id": "14973287", "url": "https://pubmed.ncbi.nlm.nih.gov/14973287" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P98160-1", "protein_name": "Basement membrane-specific heparan sulfate proteoglycan core protein", "gene_name": "HSPG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15502-3", "protein_name": "Elastin", "gene_name": "ELN", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43897-1", "protein_name": "Tolloid-like protein 1", "gene_name": "TLL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9R118-1", "protein_name": "Serine protease HTRA1", "gene_name": "Htra1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q13444-1", "protein_name": "Disintegrin and metalloproteinase domain-containing protein 15", "gene_name": "ADAM15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92542-1", "protein_name": "Nicastrin", "gene_name": "NCSTN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02751-15", "protein_name": "Fibronectin", "gene_name": "FN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04632-1", "protein_name": "Calpain small subunit 1", "gene_name": "CAPNS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04202-1", "protein_name": "Transforming growth factor beta-1 proprotein", "gene_name": "Tgfb1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P08246-1", "protein_name": "Neutrophil elastase", "gene_name": "ELANE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92743-1", "protein_name": "Serine protease HTRA1", "gene_name": "HTRA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBM4-1", "protein_name": "Opticin", "gene_name": "OPTC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16112-1", "protein_name": "Aggrecan core protein", "gene_name": "ACAN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P03956-1", "protein_name": "Interstitial collagenase", "gene_name": "MMP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39900-1", "protein_name": "Macrophage metalloelastase", "gene_name": "MMP12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14543-1", "protein_name": "Nidogen-1", "gene_name": "NID1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWY4-1", "protein_name": "Signal peptide, CUB and EGF-like domain-containing protein 1", "gene_name": "SCUBE1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35613-1", "protein_name": "Basigin", "gene_name": "BSG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50281-1", "protein_name": "Matrix metalloproteinase-14", "gene_name": "MMP14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TE57-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 16", "gene_name": "ADAMTS16", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNA0-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 5", "gene_name": "ADAMTS5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6MZZ7-1", "protein_name": "Calpain-13", "gene_name": "CAPN13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07711-1", "protein_name": "Procathepsin L", "gene_name": "CTSL", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75808-1", "protein_name": "Calpain-15", "gene_name": "CAPN15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16070-1", "protein_name": "CD44 antigen", "gene_name": "CD44", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08311-1", "protein_name": "Cathepsin G", "gene_name": "CTSG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10451-1", "protein_name": "Osteopontin", "gene_name": "SPP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25774-1", "protein_name": "Cathepsin S", "gene_name": "CTSS", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15484-1", "protein_name": "Calpain-5", "gene_name": "CAPN5", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60911-1", "protein_name": "Cathepsin L2", "gene_name": "CTSV", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07942-1", "protein_name": "Laminin subunit beta-1", "gene_name": "LAMB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49862-1", "protein_name": "Kallikrein-7", "gene_name": "KLK7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13753-1", "protein_name": "Laminin subunit gamma-2", "gene_name": "LAMC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11047-1", "protein_name": "Laminin subunit gamma-1", "gene_name": "LAMC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P45452-1", "protein_name": "Collagenase 3", "gene_name": "MMP13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24347-1", "protein_name": "Stromelysin-3", "gene_name": "MMP11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09238-1", "protein_name": "Stromelysin-2", "gene_name": "MMP10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51511-1", "protein_name": "Matrix metalloproteinase-15", "gene_name": "MMP15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P43027-1", "protein_name": "Growth/differentiation factor 5", "gene_name": "Gdf5", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q96L46-1", "protein_name": "Calpain small subunit 2", "gene_name": "CAPNS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13751-1", "protein_name": "Laminin subunit beta-3", "gene_name": "LAMB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16787-2", "protein_name": "Laminin subunit alpha-3", "gene_name": "LAMA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15230-1", "protein_name": "Laminin subunit alpha-5", "gene_name": "LAMA5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09237-1", "protein_name": "Matrilysin", "gene_name": "MMP7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6L7-1", "protein_name": "Tolloid-like protein 2", "gene_name": "TLL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42574-1", "protein_name": "Caspase-3", "gene_name": "CASP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00747-1", "protein_name": "Plasminogen", "gene_name": "PLG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14780-1", "protein_name": "Matrix metalloproteinase-9", "gene_name": "MMP9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07585-1", "protein_name": "Decorin", "gene_name": "DCN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6W3-1", "protein_name": "Calpain-7", "gene_name": "CAPN7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13497-1", "protein_name": "Bone morphogenetic protein 1", "gene_name": "BMP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "A6NHC0-1", "protein_name": "Calpain-8", "gene_name": "CAPN8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14815-1", "protein_name": "Calpain-9", "gene_name": "CAPN9", "tax_name": "Human" }, { "uniprot_canonical_ac": "A8MX76-1", "protein_name": "Calpain-14", "gene_name": "CAPN14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12830-1", "protein_name": "Cadherin-1", "gene_name": "CDH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZSI9-1", "protein_name": "Calpain-12", "gene_name": "CAPN12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17655-1", "protein_name": "Calpain-2 catalytic subunit", "gene_name": "CAPN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6Q1-1", "protein_name": "Calpain-6", "gene_name": "CAPN6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08253-1", "protein_name": "72 kDa type IV collagenase", "gene_name": "MMP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IX30-1", "protein_name": "Signal peptide, CUB and EGF-like domain-containing protein 3", "gene_name": "SCUBE3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27090-1", "protein_name": "Transforming growth factor beta-2 proprotein", "gene_name": "Tgfb2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q96GW7-1", "protein_name": "Brevican core protein", "gene_name": "BCAN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TE60-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 18", "gene_name": "ADAMTS18", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75173-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 4", "gene_name": "ADAMTS4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P2N4-3", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 9", "gene_name": "ADAMTS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHI8-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 1", "gene_name": "ADAMTS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UP79-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 8", "gene_name": "ADAMTS8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20807-1", "protein_name": "Calpain-3", "gene_name": "CAPN3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07384-1", "protein_name": "Calpain-1 catalytic subunit", "gene_name": "CAPN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HC96-1", "protein_name": "Calpain-10", "gene_name": "CAPN10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P43235-1", "protein_name": "Cathepsin K", "gene_name": "CTSK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UMQ6-1", "protein_name": "Calpain-11", "gene_name": "CAPN11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35555-1", "protein_name": "Fibrillin-1", "gene_name": "FBN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35556-1", "protein_name": "Fibrillin-2", "gene_name": "FBN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q75N90-1", "protein_name": "Fibrillin-3", "gene_name": "FBN3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20810-1", "protein_name": "Calpastatin", "gene_name": "CAST", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08254-1", "protein_name": "Stromelysin-1", "gene_name": "MMP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22894-1", "protein_name": "Neutrophil collagenase", "gene_name": "MMP8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99542-1", "protein_name": "Matrix metalloproteinase-19", "gene_name": "MMP19", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60882-1", "protein_name": "Matrix metalloproteinase-20", "gene_name": "MMP20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IU80-4", "protein_name": "Transmembrane protease serine 6", "gene_name": "TMPRSS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49768-1", "protein_name": "Presenilin-1", "gene_name": "PSEN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14672-1", "protein_name": "Disintegrin and metalloproteinase domain-containing protein 10", "gene_name": "ADAM10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01023-1", "protein_name": "Alpha-2-macroglobulin", "gene_name": "A2M", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78325-1", "protein_name": "Disintegrin and metalloproteinase domain-containing protein 8", "gene_name": "ADAM8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P21275-1", "protein_name": "Bone morphogenetic protein 4", "gene_name": "Bmp4", "tax_name": "Mouse" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P98160", "url": "https://www.uniprot.org/uniprotkb/P98160" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 328, "end_pos": 328, "sequence_org": "S", "sequence_mut": "A", "comment": "Loss of enzymatic activity. No effect on BMP4-binding.", "evidence": [ { "database": "UniProtKB", "id": "Q9R118", "url": "https://www.uniprot.org/uniprotkb/Q9R118" }, { "database": "PubMed", "id": "14973287", "url": "https://pubmed.ncbi.nlm.nih.gov/14973287" } ], "uniprot_canonical_ac": "Q9R118-1" } ], "record_id": "pubmed.14973287", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 86 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Innate antiviral responses by means of TLR7-mediated recognition of single-stranded RNA.", "journal": "Science (New York, N.Y.)", "date": "2004", "authors": "Diebold SS, Kaisho T, Hemmi H, Akira S, Reis e Sousa C", "reference": { "type": "PubMed", "id": "14976261", "url": "https://pubmed.ncbi.nlm.nih.gov/14976261" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P98160-1", "protein_name": "Basement membrane-specific heparan sulfate proteoglycan core protein", "gene_name": "HSPG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96G25-1", "protein_name": "Mediator of RNA polymerase II transcription subunit 8", "gene_name": "MED8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75056-1", "protein_name": "Syndecan-3", "gene_name": "SDC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4X5-1", "protein_name": "E3 ubiquitin-protein ligase ARIH1", "gene_name": "ARIH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00468-1", "protein_name": "Agrin", "gene_name": "AGRN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H204-1", "protein_name": "Mediator of RNA polymerase II transcription subunit 28", "gene_name": "MED28", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14457-1", "protein_name": "Beclin-1", "gene_name": "BECN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14933-1", "protein_name": "Ubiquitin/ISG15-conjugating enzyme E2 L6", "gene_name": "UBE2L6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P58681-1", "protein_name": "Toll-like receptor 7", "gene_name": "Tlr7", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P29728-1", "protein_name": "2'-5'-oligoadenylate synthase 2", "gene_name": "OAS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2X3-1", "protein_name": "C-type lectin domain family 4 member M", "gene_name": "CLEC4M", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NNX6-1", "protein_name": "CD209 antigen", "gene_name": "CD209", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71SY5-1", "protein_name": "Mediator of RNA polymerase II transcription subunit 25", "gene_name": "MED25", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46821-1", "protein_name": "Microtubule-associated protein 1B", "gene_name": "MAP1B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15648-1", "protein_name": "Mediator of RNA polymerase II transcription subunit 1", "gene_name": "MED1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51654-1", "protein_name": "Glypican-3", "gene_name": "GPC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUE0-1", "protein_name": "Mediator of RNA polymerase II transcription subunit 18", "gene_name": "MED18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NWA0-1", "protein_name": "Mediator of RNA polymerase II transcription subunit 9", "gene_name": "MED9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18827-1", "protein_name": "Syndecan-1", "gene_name": "SDC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14258-1", "protein_name": "E3 ubiquitin/ISG15 ligase TRIM25", "gene_name": "TRIM25", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60603-1", "protein_name": "Toll-like receptor 2", "gene_name": "TLR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95786-1", "protein_name": "Antiviral innate immune response receptor RIG-I", "gene_name": "DDX58; RIGI", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31431-1", "protein_name": "Syndecan-4", "gene_name": "SDC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00206-1", "protein_name": "Toll-like receptor 4", "gene_name": "TLR4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75448-1", "protein_name": "Mediator of RNA polymerase II transcription subunit 24", "gene_name": "MED24", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2X0-1", "protein_name": "Mediator of RNA polymerase II transcription subunit 16", "gene_name": "MED16", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NVC6-1", "protein_name": "Mediator of RNA polymerase II transcription subunit 17", "gene_name": "MED17", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NX70-1", "protein_name": "Mediator of RNA polymerase II transcription subunit 29", "gene_name": "MED29", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71F56-1", "protein_name": "Mediator of RNA polymerase II transcription subunit 13-like", "gene_name": "MED13L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P086-1", "protein_name": "Mediator of RNA polymerase II transcription subunit 11", "gene_name": "MED11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHV7-1", "protein_name": "Mediator of RNA polymerase II transcription subunit 13", "gene_name": "MED13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H944-1", "protein_name": "Mediator of RNA polymerase II transcription subunit 20", "gene_name": "MED20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P2C8-1", "protein_name": "Mediator of RNA polymerase II transcription subunit 27", "gene_name": "MED27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9ULK4-1", "protein_name": "Mediator of RNA polymerase II transcription subunit 23", "gene_name": "MED23", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60244-1", "protein_name": "Mediator of RNA polymerase II transcription subunit 14", "gene_name": "MED14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6Y9-1", "protein_name": "Lymphocyte antigen 96", "gene_name": "LY96", "tax_name": "Human" }, { "uniprot_canonical_ac": "A0JLT2-1", "protein_name": "Mediator of RNA polymerase II transcription subunit 19", "gene_name": "MED19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15528-1", "protein_name": "Mediator of RNA polymerase II transcription subunit 22", "gene_name": "MED22", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTT4-1", "protein_name": "Mediator of RNA polymerase II transcription subunit 10", "gene_name": "MED10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y625-1", "protein_name": "Glypican-6", "gene_name": "GPC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75586-1", "protein_name": "Mediator of RNA polymerase II transcription subunit 6", "gene_name": "MED6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N158-1", "protein_name": "Glypican-2", "gene_name": "GPC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43513-1", "protein_name": "Mediator of RNA polymerase II transcription subunit 7", "gene_name": "MED7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NYK1-1", "protein_name": "Toll-like receptor 7", "gene_name": "TLR7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPJ6-1", "protein_name": "Mediator of RNA polymerase II transcription subunit 4", "gene_name": "MED4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P34741-1", "protein_name": "Syndecan-2", "gene_name": "SDC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49238-1", "protein_name": "CX3C chemokine receptor 1", "gene_name": "CX3CR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3C7-1", "protein_name": "Mediator of RNA polymerase II transcription subunit 31", "gene_name": "MED31", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78333-1", "protein_name": "Glypican-5", "gene_name": "GPC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35052-1", "protein_name": "Glypican-1", "gene_name": "GPC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51572-1", "protein_name": "B-cell receptor-associated protein 31", "gene_name": "BCAP31", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UII4-1", "protein_name": "E3 ISG15--protein ligase HERC5", "gene_name": "HERC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15455-1", "protein_name": "Toll-like receptor 3", "gene_name": "TLR3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96RN5-1", "protein_name": "Mediator of RNA polymerase II transcription subunit 15", "gene_name": "MED15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2C9-1", "protein_name": "Toll-like receptor 6", "gene_name": "TLR6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NR97-1", "protein_name": "Toll-like receptor 8", "gene_name": "TLR8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24863-1", "protein_name": "Cyclin-C", "gene_name": "CCNC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49336-1", "protein_name": "Cyclin-dependent kinase 8", "gene_name": "CDK8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13503-1", "protein_name": "Mediator of RNA polymerase II transcription subunit 21", "gene_name": "MED21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BWU1-1", "protein_name": "Cyclin-dependent kinase 19", "gene_name": "CDK19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08571-1", "protein_name": "Monocyte differentiation antigen CD14", "gene_name": "CD14", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95402-1", "protein_name": "Mediator of RNA polymerase II transcription subunit 26", "gene_name": "MED26", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96HR3-1", "protein_name": "Mediator of RNA polymerase II transcription subunit 30", "gene_name": "MED30", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75487-1", "protein_name": "Glypican-4", "gene_name": "GPC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99877-1", "protein_name": "Histone H2B type 1-N", "gene_name": "H2BC15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05161-1", "protein_name": "Ubiquitin-like protein ISG15", "gene_name": "ISG15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93074-1", "protein_name": "Mediator of RNA polymerase II transcription subunit 12", "gene_name": "MED12", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P98160", "url": "https://www.uniprot.org/uniprotkb/P98160" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.14976261", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 67 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The factor V activation paradox.", "journal": "The Journal of biological chemistry", "date": "2004", "authors": "Orfeo T, Brufatto N, Nesheim ME, Xu H, Butenas S, Mann KG", "reference": { "type": "PubMed", "id": "14982929", "url": "https://pubmed.ncbi.nlm.nih.gov/14982929" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P98160-1", "protein_name": "Basement membrane-specific heparan sulfate proteoglycan core protein", "gene_name": "HSPG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75056-1", "protein_name": "Syndecan-3", "gene_name": "SDC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00734-1", "protein_name": "Prothrombin", "gene_name": "F2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q4KMQ2-1", "protein_name": "Anoctamin-6", "gene_name": "ANO6", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00468-1", "protein_name": "Agrin", "gene_name": "AGRN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01008-1", "protein_name": "Antithrombin-III", "gene_name": "SERPINC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07093-1", "protein_name": "Glia-derived nexin", "gene_name": "SERPINE2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51654-1", "protein_name": "Glypican-3", "gene_name": "GPC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07359-1", "protein_name": "Platelet glycoprotein Ib alpha chain", "gene_name": "GP1BA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13224-1", "protein_name": "Platelet glycoprotein Ib beta chain", "gene_name": "GP1BB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18827-1", "protein_name": "Syndecan-1", "gene_name": "SDC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04275-1", "protein_name": "von Willebrand factor", "gene_name": "VWF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31431-1", "protein_name": "Syndecan-4", "gene_name": "SDC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y625-1", "protein_name": "Glypican-6", "gene_name": "GPC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05154-1", "protein_name": "Plasma serine protease inhibitor", "gene_name": "SERPINA5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N158-1", "protein_name": "Glypican-2", "gene_name": "GPC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P03951-1", "protein_name": "Coagulation factor XI", "gene_name": "F11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00451-1", "protein_name": "Coagulation factor VIII", "gene_name": "F8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00740-1", "protein_name": "Coagulation factor IX", "gene_name": "F9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04070-1", "protein_name": "Vitamin K-dependent protein C", "gene_name": "PROC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P34741-1", "protein_name": "Syndecan-2", "gene_name": "SDC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12259-1", "protein_name": "Coagulation factor V", "gene_name": "F5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78333-1", "protein_name": "Glypican-5", "gene_name": "GPC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35052-1", "protein_name": "Glypican-1", "gene_name": "GPC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07225-1", "protein_name": "Vitamin K-dependent protein S", "gene_name": "PROS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05546-1", "protein_name": "Heparin cofactor 2", "gene_name": "SERPIND1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00742-1", "protein_name": "Coagulation factor X", "gene_name": "F10", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75487-1", "protein_name": "Glypican-4", "gene_name": "GPC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14770-1", "protein_name": "Platelet glycoprotein IX", "gene_name": "GP9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40197-1", "protein_name": "Platelet glycoprotein V", "gene_name": "GP5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08709-1", "protein_name": "Coagulation factor VII", "gene_name": "F7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13726-1", "protein_name": "Tissue factor", "gene_name": "F3", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P98160", "url": "https://www.uniprot.org/uniprotkb/P98160" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.14982929", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 32 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Structural basis for acceptor substrate recognition of a human glucuronyltransferase, GlcAT-P, an enzyme critical in the biosynthesis of the carbohydrate epitope HNK-1.", "journal": "The Journal of biological chemistry", "date": "2004", "authors": "Kakuda S, Shiba T, Ishiguro M, Tagawa H, Oka S, Kajihara Y, Kawasaki T, Wakatsuki S, Kato R", "reference": { "type": "PubMed", "id": "14993226", "url": "https://pubmed.ncbi.nlm.nih.gov/14993226" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P98160-1", "protein_name": "Basement membrane-specific heparan sulfate proteoglycan core protein", "gene_name": "HSPG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75056-1", "protein_name": "Syndecan-3", "gene_name": "SDC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00468-1", "protein_name": "Agrin", "gene_name": "AGRN", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75063-1", "protein_name": "Glycosaminoglycan xylosylkinase", "gene_name": "FAM20B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P21810-1", "protein_name": "Biglycan", "gene_name": "BGN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51654-1", "protein_name": "Glypican-3", "gene_name": "GPC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18827-1", "protein_name": "Syndecan-1", "gene_name": "SDC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P2W7-1", "protein_name": "Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1", "gene_name": "B3GAT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94766-1", "protein_name": "Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 3", "gene_name": "B3GAT3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPZ5-1", "protein_name": "Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 2", "gene_name": "B3GAT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95196-1", "protein_name": "Chondroitin sulfate proteoglycan 5", "gene_name": "CSPG5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31431-1", "protein_name": "Syndecan-4", "gene_name": "SDC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y625-1", "protein_name": "Glypican-6", "gene_name": "GPC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N158-1", "protein_name": "Glypican-2", "gene_name": "GPC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P34741-1", "protein_name": "Syndecan-2", "gene_name": "SDC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6UVK1-1", "protein_name": "Chondroitin sulfate proteoglycan 4", "gene_name": "CSPG4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78333-1", "protein_name": "Glypican-5", "gene_name": "GPC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35052-1", "protein_name": "Glypican-1", "gene_name": "GPC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13611-1", "protein_name": "Versican core protein", "gene_name": "VCAN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96L58-1", "protein_name": "Beta-1,3-galactosyltransferase 6", "gene_name": "B3GALT6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07585-1", "protein_name": "Decorin", "gene_name": "DCN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBV7-1", "protein_name": "Beta-1,4-galactosyltransferase 7", "gene_name": "B4GALT7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96GW7-1", "protein_name": "Brevican core protein", "gene_name": "BCAN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TE99-1", "protein_name": "2-phosphoxylose phosphatase 1", "gene_name": "PXYLP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H1B5-1", "protein_name": "Xylosyltransferase 2", "gene_name": "XYLT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NBZ7-1", "protein_name": "UDP-glucuronic acid decarboxylase 1", "gene_name": "UXS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86Y38-1", "protein_name": "Xylosyltransferase 1", "gene_name": "XYLT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75487-1", "protein_name": "Glypican-4", "gene_name": "GPC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14594-1", "protein_name": "Neurocan core protein", "gene_name": "NCAN", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P98160", "url": "https://www.uniprot.org/uniprotkb/P98160" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.14993226", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 29 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Characterization of severe acute respiratory syndrome-associated coronavirus (SARS-CoV) spike glycoprotein-mediated viral entry.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2004", "authors": "Simmons G, Reeves JD, Rennekamp AJ, Amberg SM, Piefer AJ, Bates P", "reference": { "type": "PubMed", "id": "15010527", "url": "https://pubmed.ncbi.nlm.nih.gov/15010527" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P98160-1", "protein_name": "Basement membrane-specific heparan sulfate proteoglycan core protein", "gene_name": "HSPG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75056-1", "protein_name": "Syndecan-3", "gene_name": "SDC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00468-1", "protein_name": "Agrin", "gene_name": "AGRN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09958-1", "protein_name": "Furin", "gene_name": "FURIN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51654-1", "protein_name": "Glypican-3", "gene_name": "GPC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18827-1", "protein_name": "Syndecan-1", "gene_name": "SDC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07711-1", "protein_name": "Procathepsin L", "gene_name": "CTSL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31431-1", "protein_name": "Syndecan-4", "gene_name": "SDC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y625-1", "protein_name": "Glypican-6", "gene_name": "GPC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N158-1", "protein_name": "Glypican-2", "gene_name": "GPC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BYF1-1", "protein_name": "Angiotensin-converting enzyme 2", "gene_name": "ACE2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55072-1", "protein_name": "Transitional endoplasmic reticulum ATPase", "gene_name": "VCP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P34741-1", "protein_name": "Syndecan-2", "gene_name": "SDC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14786-1", "protein_name": "Neuropilin-1", "gene_name": "NRP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78333-1", "protein_name": "Glypican-5", "gene_name": "GPC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35052-1", "protein_name": "Glypican-1", "gene_name": "GPC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96D42-1", "protein_name": "Hepatitis A virus cellular receptor 1", "gene_name": "HAVCR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15393-1", "protein_name": "Transmembrane protease serine 2", "gene_name": "TMPRSS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75487-1", "protein_name": "Glypican-4", "gene_name": "GPC4", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P98160", "url": "https://www.uniprot.org/uniprotkb/P98160" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.15010527", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 19 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Ubiquitylation of synphilin-1 and alpha-synuclein by SIAH and its presence in cellular inclusions and Lewy bodies imply a role in Parkinson's disease.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2004", "authors": "Liani E, Eyal A, Avraham E, Shemer R, Szargel R, Berg D, Bornemann A, Riess O, Ross CA, Rott R, Engelender S", "reference": { "type": "PubMed", "id": "15064394", "url": "https://pubmed.ncbi.nlm.nih.gov/15064394" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P98160-1", "protein_name": "Basement membrane-specific heparan sulfate proteoglycan core protein", "gene_name": "HSPG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61626-1", "protein_name": "Lysozyme C", "gene_name": "LYZ", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0DJI8-1", "protein_name": "Serum amyloid A-1 protein", "gene_name": "SAA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04279-1", "protein_name": "Semenogelin-1", "gene_name": "SEMG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95858-1", "protein_name": "Tetraspanin-15", "gene_name": "TSPAN15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02788-1", "protein_name": "Lactotransferrin", "gene_name": "LTF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02671-1", "protein_name": "Fibrinogen alpha chain", "gene_name": "FGA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92542-1", "protein_name": "Nicastrin", "gene_name": "NCSTN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BI3-1", "protein_name": "Gamma-secretase subunit APH-1A", "gene_name": "APH1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14933-1", "protein_name": "Ubiquitin/ISG15-conjugating enzyme E2 L6", "gene_name": "UBE2L6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q920M9-1", "protein_name": "E3 ubiquitin-protein ligase SIAH1", "gene_name": "Siah1", "tax_name": "Rat" }, { "uniprot_canonical_ac": "P09958-1", "protein_name": "Furin", "gene_name": "FURIN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0C0S5-1", "protein_name": "Histone H2A.Z", "gene_name": "H2AZ1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NZ42-1", "protein_name": "Gamma-secretase subunit PEN-2", "gene_name": "PSENEN", "tax_name": "Human" }, { "uniprot_canonical_ac": "A1E959-1", "protein_name": "Odontogenic ameloblast-associated protein", "gene_name": "ODAM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10997-1", "protein_name": "Islet amyloid polypeptide", "gene_name": "IAPP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02743-1", "protein_name": "Serum amyloid P-component", "gene_name": "APCS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01236-1", "protein_name": "Prolactin", "gene_name": "PRL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6H5-1", "protein_name": "Synphilin-1", "gene_name": "SNCAIP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92673-1", "protein_name": "Sortilin-related receptor", "gene_name": "SORL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84243-1", "protein_name": "Histone H3.3", "gene_name": "H3-3A; H3-3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15582-1", "protein_name": "Transforming growth factor-beta-induced protein ig-h3", "gene_name": "TGFBI", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02649-1", "protein_name": "Apolipoprotein E", "gene_name": "APOE", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01258-1", "protein_name": "Calcitonin", "gene_name": "CALCA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UJY5-1", "protein_name": "ADP-ribosylation factor-binding protein GGA1", "gene_name": "GGA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05937-1", "protein_name": "Calbindin", "gene_name": "CALB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02766-1", "protein_name": "Transthyretin", "gene_name": "TTR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y287-1", "protein_name": "Integral membrane protein 2B", "gene_name": "ITM2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43255-1", "protein_name": "E3 ubiquitin-protein ligase SIAH2", "gene_name": "SIAH2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62079-1", "protein_name": "Tetraspanin-5", "gene_name": "TSPAN5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86UF1-1", "protein_name": "Tetraspanin-33", "gene_name": "TSPAN33", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62805-1", "protein_name": "Histone H4", "gene_name": "H4C11; H4C12; H4C13; H4C14; H4C15; H4C16; H4C1; H4C2; H4C3; H4C4; H4C5; H4C6; H4C8; H4C9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68431-1", "protein_name": "Histone H3.1", "gene_name": "H3C10; H3C11; H3C12; H3C1; H3C2; H3C3; H3C4; H3C6; H3C7; H3C8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61769-1", "protein_name": "Beta-2-microglobulin", "gene_name": "B2M", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01160-1", "protein_name": "Natriuretic peptides A", "gene_name": "NPPA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06727-1", "protein_name": "Apolipoprotein A-IV", "gene_name": "APOA4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WW43-1", "protein_name": "Gamma-secretase subunit APH-1B", "gene_name": "APH1B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16778-1", "protein_name": "Histone H2B type 2-E", "gene_name": "H2BC21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62807-1", "protein_name": "Histone H2B type 1-C/E/F/G/I", "gene_name": "H2BC10; H2BC4; H2BC6; H2BC7; H2BC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06396-1", "protein_name": "Gelsolin", "gene_name": "GSN", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60260-1", "protein_name": "E3 ubiquitin-protein ligase parkin", "gene_name": "PRKN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01034-1", "protein_name": "Cystatin-C", "gene_name": "CST3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NZ52-1", "protein_name": "ADP-ribosylation factor-binding protein GGA3", "gene_name": "GGA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71DI3-1", "protein_name": "Histone H3.2", "gene_name": "H3C13; H3C14; H3C15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UJY4-1", "protein_name": "ADP-ribosylation factor-binding protein GGA2", "gene_name": "GGA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16104-1", "protein_name": "Histone H2AX", "gene_name": "H2AX", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33778-1", "protein_name": "Histone H2B type 1-B", "gene_name": "H2BC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P58876-1", "protein_name": "Histone H2B type 1-D", "gene_name": "H2BC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A08-1", "protein_name": "Histone H2B type 1-A", "gene_name": "H2BC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23527-1", "protein_name": "Histone H2B type 1-O", "gene_name": "H2BC17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0C5Y9-1", "protein_name": "Histone H2A-Bbd type 1", "gene_name": "H2AB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93008-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 9X", "gene_name": "USP9X", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60814-1", "protein_name": "Histone H2B type 1-K", "gene_name": "H2BC12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93077-1", "protein_name": "Histone H2A type 1-C", "gene_name": "H2AC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93079-1", "protein_name": "Histone H2B type 1-H", "gene_name": "H2BC9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99879-1", "protein_name": "Histone H2B type 1-M", "gene_name": "H2BC14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NG11-1", "protein_name": "Tetraspanin-14", "gene_name": "TSPAN14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHE5-1", "protein_name": "N-acetyltransferase 8", "gene_name": "NAT8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHF3-1", "protein_name": "N-acetyltransferase 8B", "gene_name": "NAT8B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P56817-1", "protein_name": "Beta-secretase 1", "gene_name": "BACE1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG47-1", "protein_name": "Polyubiquitin-B", "gene_name": "UBB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01308-1", "protein_name": "Insulin", "gene_name": "INS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04908-1", "protein_name": "Histone H2A type 1-B/E", "gene_name": "H2AC4; H2AC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06899-1", "protein_name": "Histone H2B type 1-J", "gene_name": "H2BC11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20671-1", "protein_name": "Histone H2A type 1-D", "gene_name": "H2AC7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57053-1", "protein_name": "Histone H2B type F-S", "gene_name": "H2BC12L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16777-1", "protein_name": "Histone H2A type 2-C", "gene_name": "H2AC20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6FI13-1", "protein_name": "Histone H2A type 2-A", "gene_name": "H2AC18; H2AC19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N257-1", "protein_name": "Histone H2B type 3-B", "gene_name": "H2BC26", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99877-1", "protein_name": "Histone H2B type 1-N", "gene_name": "H2BC15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99878-1", "protein_name": "Histone H2A type 1-J", "gene_name": "H2AC14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99880-1", "protein_name": "Histone H2B type 1-L", "gene_name": "H2BC13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08431-1", "protein_name": "Lactadherin", "gene_name": "MFGE8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8R4T2-1", "protein_name": "E3 ubiquitin-protein ligase SIAH2", "gene_name": "Siah2", "tax_name": "Rat" }, { "uniprot_canonical_ac": "P05067-1", "protein_name": "Amyloid-beta precursor protein", "gene_name": "APP", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14672-1", "protein_name": "Disintegrin and metalloproteinase domain-containing protein 10", "gene_name": "ADAM10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02647-1", "protein_name": "Apolipoprotein A-I", "gene_name": "APOA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IUQ4-1", "protein_name": "E3 ubiquitin-protein ligase SIAH1", "gene_name": "SIAH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG48-1", "protein_name": "Polyubiquitin-C", "gene_name": "UBC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P37840-1", "protein_name": "Alpha-synuclein", "gene_name": "SNCA", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P98160", "url": "https://www.uniprot.org/uniprotkb/P98160" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 79, "end_pos": 79, "sequence_org": "V", "sequence_mut": "N", "comment": "Decreases interaction with SIAH1 and formation of cytoplasmic inclusion bodies; when associated with N-81.", "evidence": [ { "database": "UniProtKB", "id": "Q9Y6H5", "url": "https://www.uniprot.org/uniprotkb/Q9Y6H5" }, { "database": "PubMed", "id": "15064394", "url": "https://pubmed.ncbi.nlm.nih.gov/15064394" } ], "uniprot_canonical_ac": "Q9Y6H5-1" }, { "start_pos": 81, "end_pos": 81, "sequence_org": "P", "sequence_mut": "N", "comment": "Decreases interaction with SIAH1 and formation of cytoplasmic inclusion bodies; when associated with N-79.", "evidence": [ { "database": "UniProtKB", "id": "Q9Y6H5", "url": "https://www.uniprot.org/uniprotkb/Q9Y6H5" }, { "database": "PubMed", "id": "15064394", "url": "https://pubmed.ncbi.nlm.nih.gov/15064394" } ], "uniprot_canonical_ac": "Q9Y6H5-1" }, { "start_pos": 55, "end_pos": 55, "sequence_org": "C", "sequence_mut": "A", "comment": "Loss of function; when associated with A-59 and S-72.", "evidence": [ { "database": "UniProtKB", "id": "Q8IUQ4", "url": "https://www.uniprot.org/uniprotkb/Q8IUQ4" }, { "database": "PubMed", "id": "15064394", "url": "https://pubmed.ncbi.nlm.nih.gov/15064394" }, { "database": "PubMed", "id": "9858595", "url": "https://pubmed.ncbi.nlm.nih.gov/9858595" } ], "uniprot_canonical_ac": "Q8IUQ4-1" }, { "start_pos": 55, "end_pos": 55, "sequence_org": "C", "sequence_mut": "S", "comment": "Loss of function; when associated with Y-59.", "evidence": [ { "database": "UniProtKB", "id": "Q8IUQ4", "url": "https://www.uniprot.org/uniprotkb/Q8IUQ4" }, { "database": "PubMed", "id": "15064394", "url": "https://pubmed.ncbi.nlm.nih.gov/15064394" }, { "database": "PubMed", "id": "9858595", "url": "https://pubmed.ncbi.nlm.nih.gov/9858595" } ], "uniprot_canonical_ac": "Q8IUQ4-1" }, { "start_pos": 59, "end_pos": 59, "sequence_org": "H", "sequence_mut": "A", "comment": "Loss of function; when associated with A-55 and S-72.", "evidence": [ { "database": "UniProtKB", "id": "Q8IUQ4", "url": "https://www.uniprot.org/uniprotkb/Q8IUQ4" }, { "database": "PubMed", "id": "15064394", "url": "https://pubmed.ncbi.nlm.nih.gov/15064394" }, { "database": "PubMed", "id": "9858595", "url": "https://pubmed.ncbi.nlm.nih.gov/9858595" } ], "uniprot_canonical_ac": "Q8IUQ4-1" }, { "start_pos": 59, "end_pos": 59, "sequence_org": "H", "sequence_mut": "Y", "comment": "Loss of function.", "evidence": [ { "database": "UniProtKB", "id": "Q8IUQ4", "url": "https://www.uniprot.org/uniprotkb/Q8IUQ4" }, { "database": "PubMed", "id": "15064394", "url": "https://pubmed.ncbi.nlm.nih.gov/15064394" }, { "database": "PubMed", "id": "9858595", "url": "https://pubmed.ncbi.nlm.nih.gov/9858595" } ], "uniprot_canonical_ac": "Q8IUQ4-1" }, { "start_pos": 72, "end_pos": 72, "sequence_org": "C", "sequence_mut": "S", "comment": "Loss of function; when associated with A-55 and A-59.", "evidence": [ { "database": "UniProtKB", "id": "Q8IUQ4", "url": "https://www.uniprot.org/uniprotkb/Q8IUQ4" }, { "database": "PubMed", "id": "15064394", "url": "https://pubmed.ncbi.nlm.nih.gov/15064394" } ], "uniprot_canonical_ac": "Q8IUQ4-1" } ], "record_id": "pubmed.15064394", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 82 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Interactions between the cartilage oligomeric matrix protein and matrilins. Implications for matrix assembly and the pathogenesis of chondrodysplasias.", "journal": "The Journal of biological chemistry", "date": "2004", "authors": "Mann HH, Ozbek S, Engel J, Paulsson M, Wagener R", "reference": { "type": "PubMed", "id": "15075323", "url": "https://pubmed.ncbi.nlm.nih.gov/15075323" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P98160-1", "protein_name": "Basement membrane-specific heparan sulfate proteoglycan core protein", "gene_name": "HSPG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51884-1", "protein_name": "Lumican", "gene_name": "LUM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02452-1", "protein_name": "Collagen alpha-1(I) chain", "gene_name": "COL1A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18084-1", "protein_name": "Integrin beta-5", "gene_name": "ITGB5", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00468-1", "protein_name": "Agrin", "gene_name": "AGRN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02751-15", "protein_name": "Fibronectin", "gene_name": "FN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P21810-1", "protein_name": "Biglycan", "gene_name": "BGN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92752-1", "protein_name": "Tenascin-R", "gene_name": "TNR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQP3-1", "protein_name": "Tenascin-N", "gene_name": "TNN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53420-1", "protein_name": "Collagen alpha-4(IV) chain", "gene_name": "COL4A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q06828-1", "protein_name": "Fibromodulin", "gene_name": "FMOD", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75096-1", "protein_name": "Low-density lipoprotein receptor-related protein 4", "gene_name": "LRP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10915-1", "protein_name": "Hyaluronan and proteoglycan link protein 1", "gene_name": "HAPLN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16112-1", "protein_name": "Aggrecan core protein", "gene_name": "ACAN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P21815-1", "protein_name": "Integrin-binding sialoprotein", "gene_name": "IBSP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49747-1", "protein_name": "Cartilage oligomeric matrix protein", "gene_name": "COMP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXN1-1", "protein_name": "Asporin", "gene_name": "ASPN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12110-1", "protein_name": "Collagen alpha-2(VI) chain", "gene_name": "COL6A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14031-1", "protein_name": "Collagen alpha-6(IV) chain", "gene_name": "COL4A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20908-1", "protein_name": "Collagen alpha-1(V) chain", "gene_name": "COL5A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02462-1", "protein_name": "Collagen alpha-1(IV) chain", "gene_name": "COL4A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08572-1", "protein_name": "Collagen alpha-2(IV) chain", "gene_name": "COL4A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20849-1", "protein_name": "Collagen alpha-1(IX) chain", "gene_name": "COL9A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25940-1", "protein_name": "Collagen alpha-3(V) chain", "gene_name": "COL5A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01955-1", "protein_name": "Collagen alpha-3(IV) chain", "gene_name": "COL4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14118-1", "protein_name": "Dystroglycan 1", "gene_name": "DAG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07942-1", "protein_name": "Laminin subunit beta-1", "gene_name": "LAMB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24043-1", "protein_name": "Laminin subunit alpha-2", "gene_name": "LAMA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25391-1", "protein_name": "Laminin subunit alpha-1", "gene_name": "LAMA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11047-1", "protein_name": "Laminin subunit gamma-1", "gene_name": "LAMC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10600-1", "protein_name": "Transforming growth factor beta-3 proprotein", "gene_name": "TGFB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13683-1", "protein_name": "Integrin alpha-7", "gene_name": "ITGA7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16787-2", "protein_name": "Laminin subunit alpha-3", "gene_name": "LAMA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18564-1", "protein_name": "Integrin beta-6", "gene_name": "ITGB6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16363-1", "protein_name": "Laminin subunit alpha-4", "gene_name": "LAMA4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15230-1", "protein_name": "Laminin subunit alpha-5", "gene_name": "LAMA5", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95460-1", "protein_name": "Matrilin-4", "gene_name": "MATN4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08514-1", "protein_name": "Integrin alpha-IIb", "gene_name": "ITGA2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06756-1", "protein_name": "Integrin alpha-V", "gene_name": "ITGAV", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53708-1", "protein_name": "Integrin alpha-8", "gene_name": "ITGA8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P21941-1", "protein_name": "Matrilin-1", "gene_name": "MATN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05556-1", "protein_name": "Integrin beta-1", "gene_name": "ITGB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02461-1", "protein_name": "Collagen alpha-1(III) chain", "gene_name": "COL3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29400-1", "protein_name": "Collagen alpha-5(IV) chain", "gene_name": "COL4A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14055-1", "protein_name": "Collagen alpha-2(IX) chain", "gene_name": "COL9A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09486-1", "protein_name": "SPARC", "gene_name": "SPARC", "tax_name": "Human" }, { "uniprot_canonical_ac": "A8TX70-1", "protein_name": "Collagen alpha-5(VI) chain", "gene_name": "COL6A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05997-1", "protein_name": "Collagen alpha-2(V) chain", "gene_name": "COL5A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "A6NMZ7-1", "protein_name": "Collagen alpha-6(VI) chain", "gene_name": "COL6A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12111-1", "protein_name": "Collagen alpha-3(VI) chain", "gene_name": "COL6A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08123-1", "protein_name": "Collagen alpha-2(I) chain", "gene_name": "COL1A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12109-1", "protein_name": "Collagen alpha-1(VI) chain", "gene_name": "COL6A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02458-2", "protein_name": "Collagen alpha-1(II) chain", "gene_name": "COL2A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14050-1", "protein_name": "Collagen alpha-3(IX) chain", "gene_name": "COL9A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05106-1", "protein_name": "Integrin beta-3", "gene_name": "ITGB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13611-1", "protein_name": "Versican core protein", "gene_name": "VCAN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07585-1", "protein_name": "Decorin", "gene_name": "DCN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04004-1", "protein_name": "Vitronectin", "gene_name": "VTN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NZW4-1", "protein_name": "Dentin sialophosphoprotein", "gene_name": "DSPP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13797-1", "protein_name": "Integrin alpha-9", "gene_name": "ITGA9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96GW7-1", "protein_name": "Brevican core protein", "gene_name": "BCAN", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15146-1", "protein_name": "Muscle, skeletal receptor tyrosine-protein kinase", "gene_name": "MUSK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13332-1", "protein_name": "Receptor-type tyrosine-protein phosphatase S", "gene_name": "PTPRS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20702-1", "protein_name": "Integrin alpha-X", "gene_name": "ITGAX", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17301-1", "protein_name": "Integrin alpha-2", "gene_name": "ITGA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15232-1", "protein_name": "Matrilin-3", "gene_name": "MATN3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22105-3", "protein_name": "Tenascin-X", "gene_name": "TNXB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13591-2", "protein_name": "Neural cell adhesion molecule 1", "gene_name": "NCAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13316-1", "protein_name": "Dentin matrix acidic phosphoprotein 1", "gene_name": "DMP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55268-1", "protein_name": "Laminin subunit beta-2", "gene_name": "LAMB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24821-1", "protein_name": "Tenascin", "gene_name": "TNC", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14594-1", "protein_name": "Neurocan core protein", "gene_name": "NCAN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35445-1", "protein_name": "Cartilage oligomeric matrix protein", "gene_name": "COMP", "tax_name": "Bovine" }, { "uniprot_canonical_ac": "P05067-1", "protein_name": "Amyloid-beta precursor protein", "gene_name": "APP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01137-1", "protein_name": "Transforming growth factor beta-1 proprotein", "gene_name": "TGFB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61812-1", "protein_name": "Transforming growth factor beta-2 proprotein", "gene_name": "TGFB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05121-1", "protein_name": "Plasminogen activator inhibitor 1", "gene_name": "SERPINE1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P98160", "url": "https://www.uniprot.org/uniprotkb/P98160" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.15075323", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 77 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Molecular cloning and characterization of a human multisubstrate specific nucleotide-sugar transporter homologous to Drosophila fringe connection.", "journal": "The Journal of biological chemistry", "date": "2004", "authors": "Suda T, Kamiyama S, Suzuki M, Kikuchi N, Nakayama K, Narimatsu H, Jigami Y, Aoki T, Nishihara S", "reference": { "type": "PubMed", "id": "15082721", "url": "https://pubmed.ncbi.nlm.nih.gov/15082721" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P98160-1", "protein_name": "Basement membrane-specific heparan sulfate proteoglycan core protein", "gene_name": "HSPG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78381-1", "protein_name": "UDP-galactose translocator", "gene_name": "SLC35A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2D2-1", "protein_name": "UDP-N-acetylglucosamine transporter", "gene_name": "SLC35A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75056-1", "protein_name": "Syndecan-3", "gene_name": "SDC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78382-1", "protein_name": "CMP-sialic acid transporter", "gene_name": "SLC35A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H1N7-1", "protein_name": "Adenosine 3'-phospho 5'-phosphosulfate transporter 2", "gene_name": "SLC35B3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00468-1", "protein_name": "Agrin", "gene_name": "AGRN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51654-1", "protein_name": "Glypican-3", "gene_name": "GPC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60243-1", "protein_name": "Heparan-sulfate 6-O-sulfotransferase 1", "gene_name": "HS6ST1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IZT8-1", "protein_name": "Heparan sulfate glucosamine 3-O-sulfotransferase 5", "gene_name": "HS3ST5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y661-1", "protein_name": "Heparan sulfate glucosamine 3-O-sulfotransferase 4", "gene_name": "HS3ST4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y278-1", "protein_name": "Heparan sulfate glucosamine 3-O-sulfotransferase 2", "gene_name": "HS3ST2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q76EJ3-1", "protein_name": "Nucleotide sugar transporter SLC35D2", "gene_name": "SLC35D2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TB61-1", "protein_name": "Adenosine 3'-phospho 5'-phosphosulfate transporter 1", "gene_name": "SLC35B2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18827-1", "protein_name": "Syndecan-1", "gene_name": "SDC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NTN3-1", "protein_name": "Nucleotide sugar transporter SLC35D1", "gene_name": "SLC35D1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31431-1", "protein_name": "Syndecan-4", "gene_name": "SDC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y625-1", "protein_name": "Glypican-6", "gene_name": "GPC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52848-1", "protein_name": "Bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 1", "gene_name": "NDST1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95803-1", "protein_name": "Bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 3", "gene_name": "NDST3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N158-1", "protein_name": "Glypican-2", "gene_name": "GPC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94923-1", "protein_name": "D-glucuronyl C5-epimerase", "gene_name": "GLCE", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43909-1", "protein_name": "Exostosin-like 3", "gene_name": "EXTL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969S0-1", "protein_name": "Nucleotide sugar transporter SLC35B4", "gene_name": "SLC35B4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P34741-1", "protein_name": "Syndecan-2", "gene_name": "SDC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16394-1", "protein_name": "Exostosin-1", "gene_name": "EXT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A29-1", "protein_name": "GDP-fucose transporter 1", "gene_name": "SLC35C1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78333-1", "protein_name": "Glypican-5", "gene_name": "GPC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35052-1", "protein_name": "Glypican-1", "gene_name": "GPC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96MM7-1", "protein_name": "Heparan-sulfate 6-O-sulfotransferase 2", "gene_name": "HS6ST2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBQ6-1", "protein_name": "Exostosin-like 2", "gene_name": "EXTL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14792-1", "protein_name": "Heparan sulfate glucosamine 3-O-sulfotransferase 1", "gene_name": "HS3ST1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y662-1", "protein_name": "Heparan sulfate glucosamine 3-O-sulfotransferase 3B1", "gene_name": "HS3ST3B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52849-1", "protein_name": "Bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 2", "gene_name": "NDST2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H3R1-1", "protein_name": "N-heparan sulfate sulfotransferase 4", "gene_name": "NDST4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75487-1", "protein_name": "Glypican-4", "gene_name": "GPC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93063-1", "protein_name": "Exostosin-2", "gene_name": "EXT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7LGA3-1", "protein_name": "Heparan sulfate 2-O-sulfotransferase 1", "gene_name": "HS2ST1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IZP7-1", "protein_name": "Heparan-sulfate 6-O-sulfotransferase 3", "gene_name": "HS6ST3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y663-1", "protein_name": "Heparan sulfate glucosamine 3-O-sulfotransferase 3A1", "gene_name": "HS3ST3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96QI5-1", "protein_name": "Heparan sulfate glucosamine 3-O-sulfotransferase 6", "gene_name": "HS3ST6", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P98160", "url": "https://www.uniprot.org/uniprotkb/P98160" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.15082721", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 41 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The non-structural 3 (NS3) protein of dengue virus type 2 interacts with human nuclear receptor binding protein and is associated with alterations in membrane structure.", "journal": "Virus research", "date": "2004", "authors": "Chua JJ, Ng MM, Chow VT", "reference": { "type": "PubMed", "id": "15084397", "url": "https://pubmed.ncbi.nlm.nih.gov/15084397" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P98160-1", "protein_name": "Basement membrane-specific heparan sulfate proteoglycan core protein", "gene_name": "HSPG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13247-1", "protein_name": "Serine/arginine-rich splicing factor 6", "gene_name": "SRSF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16629-1", "protein_name": "Serine/arginine-rich splicing factor 7", "gene_name": "SRSF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13984-1", "protein_name": "General transcription factor IIF subunit 2", "gene_name": "GTF2F2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63162-1", "protein_name": "Small nuclear ribonucleoprotein-associated protein N", "gene_name": "SNRPN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30876-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB2", "gene_name": "POLR2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61218-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC2", "gene_name": "POLR2F", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75533-1", "protein_name": "Splicing factor 3B subunit 1", "gene_name": "SF3B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75056-1", "protein_name": "Syndecan-3", "gene_name": "SDC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15514-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB4", "gene_name": "POLR2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3B4-1", "protein_name": "Splicing factor 3B subunit 6", "gene_name": "SF3B6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00734-1", "protein_name": "Prothrombin", "gene_name": "F2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0L4-1", "protein_name": "Cleavage stimulation factor subunit 2 tau variant", "gene_name": "CSTF2T", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51955-1", "protein_name": "Serine/threonine-protein kinase Nek2", "gene_name": "NEK2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86V81-1", "protein_name": "THO complex subunit 4", "gene_name": "ALYREF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07157-1", "protein_name": "Tight junction protein 1", "gene_name": "TJP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00468-1", "protein_name": "Agrin", "gene_name": "AGRN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24928-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB1", "gene_name": "POLR2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13554-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit beta", "gene_name": "CAMK2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99459-1", "protein_name": "Cell division cycle 5-like protein", "gene_name": "CDC5L", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60306-1", "protein_name": "RNA helicase aquarius", "gene_name": "AQR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05519-1", "protein_name": "Serine/arginine-rich splicing factor 11", "gene_name": "SRSF11", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94906-1", "protein_name": "Pre-mRNA-processing factor 6", "gene_name": "PRPF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNP9-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase E", "gene_name": "PPIE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9ULR0-3", "protein_name": "Pre-mRNA-splicing factor ISY1 homolog", "gene_name": "ISY1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCS7-1", "protein_name": "Pre-mRNA-splicing factor SYF1", "gene_name": "XAB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHY1-1", "protein_name": "Nuclear receptor-binding protein", "gene_name": "NRBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07020-1", "protein_name": "Large ribosomal subunit protein eL18", "gene_name": "RPL18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYB3-1", "protein_name": "Serine/arginine repetitive matrix protein 1", "gene_name": "SRRM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UMS4-1", "protein_name": "Pre-mRNA-processing factor 19", "gene_name": "PRPF19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07955-1", "protein_name": "Serine/arginine-rich splicing factor 1", "gene_name": "SRSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P83876-1", "protein_name": "Thioredoxin-like protein 4A", "gene_name": "TXNL4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43660-1", "protein_name": "Pleiotropic regulator 1", "gene_name": "PLRG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01130-1", "protein_name": "Serine/arginine-rich splicing factor 2", "gene_name": "SRSF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q10570-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 1", "gene_name": "CPSF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6UX04-1", "protein_name": "Spliceosome-associated protein CWC27 homolog", "gene_name": "CWC27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKF6-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 3", "gene_name": "CPSF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75937-1", "protein_name": "DnaJ homolog subfamily C member 8", "gene_name": "DNAJC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17542-1", "protein_name": "T-cell acute lymphocytic leukemia protein 1", "gene_name": "TAL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60828-1", "protein_name": "Polyglutamine-binding protein 1", "gene_name": "PQBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51654-1", "protein_name": "Glypican-3", "gene_name": "GPC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15029-1", "protein_name": "116 kDa U5 small nuclear ribonucleoprotein component", "gene_name": "EFTUD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12874-1", "protein_name": "Splicing factor 3A subunit 3", "gene_name": "SF3A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75940-1", "protein_name": "Survival of motor neuron-related-splicing factor 30", "gene_name": "SMNDC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14678-1", "protein_name": "Small nuclear ribonucleoprotein-associated proteins B and B'", "gene_name": "SNRPB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQM7-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit alpha", "gene_name": "CAMK2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2W2-1", "protein_name": "WW domain-binding protein 11", "gene_name": "WBP11", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75643-1", "protein_name": "U5 small nuclear ribonucleoprotein 200 kDa helicase", "gene_name": "SNRNP200", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09651-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A1", "gene_name": "HNRNPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94913-1", "protein_name": "Pre-mRNA cleavage complex 2 protein Pcf11", "gene_name": "PCF11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84103-1", "protein_name": "Serine/arginine-rich splicing factor 3", "gene_name": "SRSF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52435-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB11-a", "gene_name": "POLR2J", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36954-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB9", "gene_name": "POLR2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQ35-1", "protein_name": "Serine/arginine repetitive matrix protein 2", "gene_name": "SRRM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19388-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35269-1", "protein_name": "General transcription factor IIF subunit 1", "gene_name": "GTF2F1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53803-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52434-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC3", "gene_name": "POLR2H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62487-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB7", "gene_name": "POLR2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13151-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A0", "gene_name": "HNRNPA0", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18827-1", "protein_name": "Syndecan-1", "gene_name": "SDC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09661-1", "protein_name": "U2 small nuclear ribonucleoprotein A'", "gene_name": "SNRPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BWJ5-1", "protein_name": "Splicing factor 3B subunit 5", "gene_name": "SF3B5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WYA6-1", "protein_name": "Beta-catenin-like protein 1", "gene_name": "CTNNBL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q00839-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein U", "gene_name": "HNRNPU", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95639-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 4", "gene_name": "CPSF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7L014-1", "protein_name": "Probable ATP-dependent RNA helicase DDX46", "gene_name": "DDX46", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62875-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC5", "gene_name": "POLR2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUJ2-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein U-like protein 1", "gene_name": "HNRNPUL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19387-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHX1-1", "protein_name": "Poly(U)-binding-splicing factor PUF60", "gene_name": "PUF60", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41223-1", "protein_name": "Protein BUD31 homolog", "gene_name": "BUD31", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZJ0-1", "protein_name": "Crooked neck-like protein 1", "gene_name": "CRNKL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUM4-1", "protein_name": "Programmed cell death 6-interacting protein", "gene_name": "PDCD6IP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IX12-1", "protein_name": "Cell division cycle and apoptosis regulator protein 1", "gene_name": "CCAR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38919-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "EIF4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWX8-1", "protein_name": "Calcium homeostasis endoplasmic reticulum protein", "gene_name": "CHERP", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95400-1", "protein_name": "CD2 antigen cytoplasmic tail-binding protein 2", "gene_name": "CD2BP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15287-1", "protein_name": "RNA-binding protein with serine-rich domain 1", "gene_name": "RNPS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62316-1", "protein_name": "Small nuclear ribonucleoprotein Sm D2", "gene_name": "SNRPD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17844-1", "protein_name": "Probable ATP-dependent RNA helicase DDX5", "gene_name": "DDX5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52756-1", "protein_name": "RNA-binding protein 5", "gene_name": "RBM5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62308-1", "protein_name": "Small nuclear ribonucleoprotein G", "gene_name": "SNRPG", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12996-1", "protein_name": "Cleavage stimulation factor subunit 3", "gene_name": "CSTF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43143-1", "protein_name": "ATP-dependent RNA helicase DHX15", "gene_name": "DHX15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWZ8-1", "protein_name": "SURP and G-patch domain-containing protein 1", "gene_name": "SUGP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31431-1", "protein_name": "Syndecan-4", "gene_name": "SDC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00206-1", "protein_name": "Toll-like receptor 4", "gene_name": "TLR4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6Y9-1", "protein_name": "Lymphocyte antigen 96", "gene_name": "LY96", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y625-1", "protein_name": "Glypican-6", "gene_name": "GPC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92733-1", "protein_name": "Proline-rich protein PRCC", "gene_name": "PRCC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2H8-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 3", "gene_name": "PPIL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08170-1", "protein_name": "Serine/arginine-rich splicing factor 4", "gene_name": "SRSF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N158-1", "protein_name": "Glypican-2", "gene_name": "GPC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08579-1", "protein_name": "U2 small nuclear ribonucleoprotein B''", "gene_name": "SNRPB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HAV7-1", "protein_name": "GrpE protein homolog 1, mitochondrial", "gene_name": "GRPEL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51003-1", "protein_name": "Poly(A) polymerase alpha", "gene_name": "PAPOLA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15366-1", "protein_name": "Poly(rC)-binding protein 2", "gene_name": "PCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26599-3", "protein_name": "Polypyrimidine tract-binding protein 1", "gene_name": "PTBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15365-1", "protein_name": "Poly(rC)-binding protein 1", "gene_name": "PCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P2Q9-1", "protein_name": "Pre-mRNA-processing-splicing factor 8", "gene_name": "PRPF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35222-1", "protein_name": "Catenin beta-1", "gene_name": "CTNNB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07910-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins C1/C2", "gene_name": "HNRNPC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08670-1", "protein_name": "Vimentin", "gene_name": "VIM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63172-1", "protein_name": "Dynein light chain Tctex-type 1", "gene_name": "DYNLT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0C0S8-1", "protein_name": "Histone H2A type 1", "gene_name": "H2AC11; H2AC13; H2AC15; H2AC16; H2AC17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11142-1", "protein_name": "Heat shock cognate 71 kDa protein", "gene_name": "HSPA8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62805-1", "protein_name": "Histone H4", "gene_name": "H4C11; H4C12; H4C13; H4C14; H4C15; H4C16; H4C1; H4C2; H4C3; H4C4; H4C5; H4C6; H4C8; H4C9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68431-1", "protein_name": "Histone H3.1", "gene_name": "H3C10; H3C11; H3C12; H3C1; H3C2; H3C3; H3C4; H3C6; H3C7; H3C8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43390-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein R", "gene_name": "HNRNPR", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52597-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein F", "gene_name": "HNRNPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63279-1", "protein_name": "SUMO-conjugating enzyme UBC9", "gene_name": "UBE2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08211-1", "protein_name": "ATP-dependent RNA helicase A", "gene_name": "DHX9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52272-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein M", "gene_name": "HNRNPM", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16778-1", "protein_name": "Histone H2B type 2-E", "gene_name": "H2BC21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01081-1", "protein_name": "Splicing factor U2AF 35 kDa subunit", "gene_name": "U2AF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62807-1", "protein_name": "Histone H2B type 1-C/E/F/G/I", "gene_name": "H2BC10; H2BC4; H2BC6; H2BC7; H2BC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26368-1", "protein_name": "Splicing factor U2AF 65 kDa subunit", "gene_name": "U2AF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75934-1", "protein_name": "Pre-mRNA-splicing factor SPF27", "gene_name": "BCAS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N684-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 7", "gene_name": "CPSF7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62306-1", "protein_name": "Small nuclear ribonucleoprotein F", "gene_name": "SNRPF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92797-1", "protein_name": "Symplekin", "gene_name": "SYMPK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WTW3-1", "protein_name": "Conserved oligomeric Golgi complex subunit 1", "gene_name": "COG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92538-4", "protein_name": "Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1", "gene_name": "GBF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P2I0-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 2", "gene_name": "CPSF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3C6-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 1", "gene_name": "PPIL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14780-1", "protein_name": "Matrix metalloproteinase-9", "gene_name": "MMP9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P34741-1", "protein_name": "Syndecan-2", "gene_name": "SDC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49327-1", "protein_name": "Fatty acid synthase", "gene_name": "FASN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NXE8-1", "protein_name": "Pre-mRNA-splicing factor CWC25 homolog", "gene_name": "CWC25", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P013-1", "protein_name": "Spliceosome-associated protein CWC15 homolog", "gene_name": "CWC15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62318-1", "protein_name": "Small nuclear ribonucleoprotein Sm D3", "gene_name": "SNRPD3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCG8-1", "protein_name": "Pre-mRNA-splicing factor CWC22 homolog", "gene_name": "CWC22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78333-1", "protein_name": "Glypican-5", "gene_name": "GPC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35052-1", "protein_name": "Glypican-1", "gene_name": "GPC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05048-1", "protein_name": "Cleavage stimulation factor subunit 1", "gene_name": "CSTF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13557-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit delta", "gene_name": "CAMK2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33240-1", "protein_name": "Cleavage stimulation factor subunit 2", "gene_name": "CSTF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15428-1", "protein_name": "Splicing factor 3A subunit 2", "gene_name": "SF3A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15427-1", "protein_name": "Splicing factor 3B subunit 4", "gene_name": "SF3B4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71DI3-1", "protein_name": "Histone H3.2", "gene_name": "H3C13; H3C14; H3C15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y679-2", "protein_name": "Lipid droplet-regulating VLDL assembly factor AUP1", "gene_name": "AUP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P67809-1", "protein_name": "Y-box-binding protein 1", "gene_name": "YBX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13435-1", "protein_name": "Splicing factor 3B subunit 2", "gene_name": "SF3B2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUQ8-1", "protein_name": "Probable ATP-dependent RNA helicase DDX23", "gene_name": "DDX23", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92620-1", "protein_name": "Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16", "gene_name": "DHX38", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60231-1", "protein_name": "Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16", "gene_name": "DHX16", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15459-1", "protein_name": "Splicing factor 3A subunit 1", "gene_name": "SF3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5QNW6-1", "protein_name": "Histone H2B type 2-F", "gene_name": "H2BC18", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62304-1", "protein_name": "Small nuclear ribonucleoprotein E", "gene_name": "SNRPE", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33778-1", "protein_name": "Histone H2B type 1-B", "gene_name": "H2BC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P58876-1", "protein_name": "Histone H2B type 1-D", "gene_name": "H2BC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A08-1", "protein_name": "Histone H2B type 1-A", "gene_name": "H2BC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23527-1", "protein_name": "Histone H2B type 1-O", "gene_name": "H2BC17", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13242-1", "protein_name": "Serine/arginine-rich splicing factor 9", "gene_name": "SRSF9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86U42-1", "protein_name": "Polyadenylate-binding protein 2", "gene_name": "PABPN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7RTV0-1", "protein_name": "PHD finger-like domain-containing protein 5A", "gene_name": "PHF5A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IXY8-1", "protein_name": "Probable inactive peptidyl-prolyl cis-trans isomerase-like 6", "gene_name": "PPIL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUA2-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 4", "gene_name": "PPIL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51991-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A3", "gene_name": "HNRNPA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14103-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein D0", "gene_name": "HNRNPD", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31943-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein H", "gene_name": "HNRNPH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55795-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein H2", "gene_name": "HNRNPH2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13555-1", "protein_name": "Calcium/calmodulin-dependent protein kinase type II subunit gamma", "gene_name": "CAMK2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXP5-1", "protein_name": "Serrate RNA effector molecule homolog", "gene_name": "SRRT", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60814-1", "protein_name": "Histone H2B type 1-K", "gene_name": "H2BC12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93077-1", "protein_name": "Histone H2A type 1-C", "gene_name": "H2AC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93079-1", "protein_name": "Histone H2B type 1-H", "gene_name": "H2BC9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96KK5-1", "protein_name": "Histone H2A type 1-H", "gene_name": "H2AC12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99879-1", "protein_name": "Histone H2B type 1-M", "gene_name": "H2BC14", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15042-1", "protein_name": "U2 snRNP-associated SURP motif-containing protein", "gene_name": "U2SURP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96DI7-1", "protein_name": "U5 small nuclear ribonucleoprotein 40 kDa protein", "gene_name": "SNRNP40", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60508-1", "protein_name": "Pre-mRNA-processing factor 17", "gene_name": "CDC40", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13243-1", "protein_name": "Serine/arginine-rich splicing factor 5", "gene_name": "SRSF5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WU68-1", "protein_name": "Splicing factor U2AF 26 kDa subunit", "gene_name": "U2AF1L4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15393-1", "protein_name": "Splicing factor 3B subunit 3", "gene_name": "SF3B3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96I25-1", "protein_name": "Splicing factor 45", "gene_name": "RBM17", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43809-1", "protein_name": "Cleavage and polyadenylation specificity factor subunit 5", "gene_name": "NUDT21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92917-1", "protein_name": "G-patch domain and KOW motifs-containing protein", "gene_name": "GPKOW", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92989-1", "protein_name": "Polyribonucleotide 5'-hydroxyl-kinase Clp1", "gene_name": "CLP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86XP3-1", "protein_name": "ATP-dependent RNA helicase DDX42", "gene_name": "DDX42", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13573-1", "protein_name": "SNW domain-containing protein 1", "gene_name": "SNW1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NW64-1", "protein_name": "Pre-mRNA-splicing factor RBM22", "gene_name": "RBM22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35637-1", "protein_name": "RNA-binding protein FUS", "gene_name": "FUS", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6UN15-1", "protein_name": "Pre-mRNA 3'-end-processing factor FIP1", "gene_name": "FIP1L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75487-1", "protein_name": "Glypican-4", "gene_name": "GPC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62314-1", "protein_name": "Small nuclear ribonucleoprotein Sm D1", "gene_name": "SNRPD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22626-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins A2/B1", "gene_name": "HNRNPA2B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14866-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein L", "gene_name": "HNRNPL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04908-1", "protein_name": "Histone H2A type 1-B/E", "gene_name": "H2AC4; H2AC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06899-1", "protein_name": "Histone H2B type 1-J", "gene_name": "H2BC11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20671-1", "protein_name": "Histone H2A type 1-D", "gene_name": "H2AC7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16777-1", "protein_name": "Histone H2A type 2-C", "gene_name": "H2AC20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6FI13-1", "protein_name": "Histone H2A type 2-A", "gene_name": "H2AC18; H2AC19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7L7L0-1", "protein_name": "Histone H2A type 3", "gene_name": "H2AC25", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IUE6-1", "protein_name": "Histone H2A type 2-B", "gene_name": "H2AC21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N257-1", "protein_name": "Histone H2B type 3-B", "gene_name": "H2BC26", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96QV6-1", "protein_name": "Histone H2A type 1-A", "gene_name": "H2AC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99877-1", "protein_name": "Histone H2B type 1-N", "gene_name": "H2BC15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99878-1", "protein_name": "Histone H2A type 1-J", "gene_name": "H2AC14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99880-1", "protein_name": "Histone H2B type 1-L", "gene_name": "H2BC13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12926-1", "protein_name": "ELAV-like protein 2", "gene_name": "ELAVL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15717-1", "protein_name": "ELAV-like protein 1", "gene_name": "ELAVL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9C0J8-1", "protein_name": "pre-mRNA 3' end processing protein WDR33", "gene_name": "WDR33", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02647-1", "protein_name": "Apolipoprotein A-I", "gene_name": "APOA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38159-1", "protein_name": "RNA-binding motif protein, X chromosome", "gene_name": "RBMX", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40855-1", "protein_name": "Peroxisomal biogenesis factor 19", "gene_name": "PEX19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61978-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein K", "gene_name": "HNRNPK", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P98160", "url": "https://www.uniprot.org/uniprotkb/P98160" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.15084397", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 210 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Identification of GRP 78 (BiP) as a liver cell expressed receptor element for dengue virus serotype 2.", "journal": "Archives of virology", "date": "2004-05", "authors": "Jindadamrongwech S, Thepparit C, Smith D R", "reference": { "type": "PubMed", "id": "15098107", "url": "https://pubmed.ncbi.nlm.nih.gov/15098107" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P98160-1", "protein_name": "Basement membrane-specific heparan sulfate proteoglycan core protein", "gene_name": "HSPG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75056-1", "protein_name": "Syndecan-3", "gene_name": "SDC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00468-1", "protein_name": "Agrin", "gene_name": "AGRN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11021-1", "protein_name": "Endoplasmic reticulum chaperone BiP", "gene_name": "HSPA5", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95782-1", "protein_name": "AP-2 complex subunit alpha-1", "gene_name": "AP2A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95832-1", "protein_name": "Claudin-1", "gene_name": "CLDN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NNX6-1", "protein_name": "CD209 antigen", "gene_name": "CD209", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TBC4-1", "protein_name": "NEDD8-activating enzyme E1 catalytic subunit", "gene_name": "UBA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UGN4-1", "protein_name": "CMRF35-like molecule 8", "gene_name": "CD300A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22314-1", "protein_name": "Ubiquitin-like modifier-activating enzyme 1", "gene_name": "UBA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14393-2", "protein_name": "Growth arrest-specific protein 6", "gene_name": "GAS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09958-1", "protein_name": "Furin", "gene_name": "FURIN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51654-1", "protein_name": "Glypican-3", "gene_name": "GPC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "A0AVT1-1", "protein_name": "Ubiquitin-like modifier-activating enzyme 6", "gene_name": "UBA6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08865-1", "protein_name": "Small ribosomal subunit protein uS2", "gene_name": "RPSA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P5S7-1", "protein_name": "Ribonuclease kappa", "gene_name": "RNASEK", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18827-1", "protein_name": "Syndecan-1", "gene_name": "SDC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30530-1", "protein_name": "Tyrosine-protein kinase receptor UFO", "gene_name": "AXL", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95352-1", "protein_name": "Ubiquitin-like modifier-activating enzyme ATG7", "gene_name": "ATG7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20138-1", "protein_name": "Myeloid cell surface antigen CD33", "gene_name": "CD33", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q06418-1", "protein_name": "Tyrosine-protein kinase receptor TYRO3", "gene_name": "TYRO3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31431-1", "protein_name": "Syndecan-4", "gene_name": "SDC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16553-1", "protein_name": "Lymphocyte antigen 6E", "gene_name": "LY6E", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y625-1", "protein_name": "Glypican-6", "gene_name": "GPC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9GZZ9-1", "protein_name": "Ubiquitin-like modifier-activating enzyme 5", "gene_name": "UBA5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N158-1", "protein_name": "Glypican-2", "gene_name": "GPC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41226-1", "protein_name": "Ubiquitin-like modifier-activating enzyme 7", "gene_name": "UBA7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63010-1", "protein_name": "AP-2 complex subunit beta", "gene_name": "AP2B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96CW1-1", "protein_name": "AP-2 complex subunit mu", "gene_name": "AP2M1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPY8-1", "protein_name": "Microtubule-associated protein RP/EB family member 3", "gene_name": "MAPRE3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P34741-1", "protein_name": "Syndecan-2", "gene_name": "SDC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78333-1", "protein_name": "Glypican-5", "gene_name": "GPC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35052-1", "protein_name": "Glypican-1", "gene_name": "GPC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5J8M3-1", "protein_name": "ER membrane protein complex subunit 4", "gene_name": "EMC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22897-1", "protein_name": "Macrophage mannose receptor 1", "gene_name": "MRC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07225-1", "protein_name": "Vitamin K-dependent protein S", "gene_name": "PROS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96D42-1", "protein_name": "Hepatitis A virus cellular receptor 1", "gene_name": "HAVCR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96H15-1", "protein_name": "T-cell immunoglobulin and mucin domain-containing protein 4", "gene_name": "TIMD4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08571-1", "protein_name": "Monocyte differentiation antigen CD14", "gene_name": "CD14", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75487-1", "protein_name": "Glypican-4", "gene_name": "GPC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12866-1", "protein_name": "Tyrosine-protein kinase Mer", "gene_name": "MERTK", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53680-1", "protein_name": "AP-2 complex subunit sigma", "gene_name": "AP2S1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27986-1", "protein_name": "Phosphatidylinositol 3-kinase regulatory subunit alpha", "gene_name": "PIK3R1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94973-1", "protein_name": "AP-2 complex subunit alpha-2", "gene_name": "AP2A2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P98160", "url": "https://www.uniprot.org/uniprotkb/P98160" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.15098107", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 44 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "pH-dependent entry of severe acute respiratory syndrome coronavirus is mediated by the spike glycoprotein and enhanced by dendritic cell transfer through DC-SIGN.", "journal": "Journal of virology", "date": "2004", "authors": "Yang ZY, Huang Y, Ganesh L, Leung K, Kong WP, Schwartz O, Subbarao K, Nabel GJ", "reference": { "type": "PubMed", "id": "15140961", "url": "https://pubmed.ncbi.nlm.nih.gov/15140961" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P98160-1", "protein_name": "Basement membrane-specific heparan sulfate proteoglycan core protein", "gene_name": "HSPG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75056-1", "protein_name": "Syndecan-3", "gene_name": "SDC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00468-1", "protein_name": "Agrin", "gene_name": "AGRN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NNX6-1", "protein_name": "CD209 antigen", "gene_name": "CD209", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09958-1", "protein_name": "Furin", "gene_name": "FURIN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51654-1", "protein_name": "Glypican-3", "gene_name": "GPC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18827-1", "protein_name": "Syndecan-1", "gene_name": "SDC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07711-1", "protein_name": "Procathepsin L", "gene_name": "CTSL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31431-1", "protein_name": "Syndecan-4", "gene_name": "SDC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y625-1", "protein_name": "Glypican-6", "gene_name": "GPC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N158-1", "protein_name": "Glypican-2", "gene_name": "GPC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BYF1-1", "protein_name": "Angiotensin-converting enzyme 2", "gene_name": "ACE2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55072-1", "protein_name": "Transitional endoplasmic reticulum ATPase", "gene_name": "VCP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P34741-1", "protein_name": "Syndecan-2", "gene_name": "SDC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14786-1", "protein_name": "Neuropilin-1", "gene_name": "NRP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78333-1", "protein_name": "Glypican-5", "gene_name": "GPC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35052-1", "protein_name": "Glypican-1", "gene_name": "GPC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96D42-1", "protein_name": "Hepatitis A virus cellular receptor 1", "gene_name": "HAVCR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15393-1", "protein_name": "Transmembrane protease serine 2", "gene_name": "TMPRSS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75487-1", "protein_name": "Glypican-4", "gene_name": "GPC4", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P98160", "url": "https://www.uniprot.org/uniprotkb/P98160" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.15140961", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 20 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "S protein of severe acute respiratory syndrome-associated coronavirus mediates entry into hepatoma cell lines and is targeted by neutralizing antibodies in infected patients.", "journal": "Journal of virology", "date": "2004", "authors": "Hofmann H, Hattermann K, Marzi A, Gramberg T, Geier M, Krumbiegel M, Kuate S, Uberla K, Niedrig M, Pohlmann S", "reference": { "type": "PubMed", "id": "15163706", "url": "https://pubmed.ncbi.nlm.nih.gov/15163706" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P98160-1", "protein_name": "Basement membrane-specific heparan sulfate proteoglycan core protein", "gene_name": "HSPG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75056-1", "protein_name": "Syndecan-3", "gene_name": "SDC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00468-1", "protein_name": "Agrin", "gene_name": "AGRN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09958-1", "protein_name": "Furin", "gene_name": "FURIN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51654-1", "protein_name": "Glypican-3", "gene_name": "GPC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18827-1", "protein_name": "Syndecan-1", "gene_name": "SDC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07711-1", "protein_name": "Procathepsin L", "gene_name": "CTSL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31431-1", "protein_name": "Syndecan-4", "gene_name": "SDC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y625-1", "protein_name": "Glypican-6", "gene_name": "GPC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N158-1", "protein_name": "Glypican-2", "gene_name": "GPC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BYF1-1", "protein_name": "Angiotensin-converting enzyme 2", "gene_name": "ACE2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55072-1", "protein_name": "Transitional endoplasmic reticulum ATPase", "gene_name": "VCP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P34741-1", "protein_name": "Syndecan-2", "gene_name": "SDC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14786-1", "protein_name": "Neuropilin-1", "gene_name": "NRP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78333-1", "protein_name": "Glypican-5", "gene_name": "GPC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35052-1", "protein_name": "Glypican-1", "gene_name": "GPC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96D42-1", "protein_name": "Hepatitis A virus cellular receptor 1", "gene_name": "HAVCR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15393-1", "protein_name": "Transmembrane protease serine 2", "gene_name": "TMPRSS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75487-1", "protein_name": "Glypican-4", "gene_name": "GPC4", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P98160", "url": "https://www.uniprot.org/uniprotkb/P98160" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.15163706", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 19 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Dystroglycan in skin and cutaneous cells: beta-subunit is shed from the cell surface.", "journal": "The Journal of investigative dermatology", "date": "2004", "authors": "Herzog C, Has C, Franzke CW, Echtermeyer FG, Schlotzer-Schrehardt U, Kroger S, Gustafsson E, Fassler R, Bruckner-Tuderman L", "reference": { "type": "PubMed", "id": "15175026", "url": "https://pubmed.ncbi.nlm.nih.gov/15175026" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P98160-1", "protein_name": "Basement membrane-specific heparan sulfate proteoglycan core protein", "gene_name": "HSPG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43556-1", "protein_name": "Epsilon-sarcoglycan", "gene_name": "SGCE", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00468-1", "protein_name": "Agrin", "gene_name": "AGRN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16585-1", "protein_name": "Beta-sarcoglycan", "gene_name": "SGCB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14714-1", "protein_name": "Sarcospan", "gene_name": "SSPN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16586-1", "protein_name": "Alpha-sarcoglycan", "gene_name": "SGCA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96LD1-1", "protein_name": "Zeta-sarcoglycan", "gene_name": "SGCZ", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92629-1", "protein_name": "Delta-sarcoglycan", "gene_name": "SGCD", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14118-1", "protein_name": "Dystroglycan 1", "gene_name": "DAG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07942-1", "protein_name": "Laminin subunit beta-1", "gene_name": "LAMB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24043-1", "protein_name": "Laminin subunit alpha-2", "gene_name": "LAMA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25391-1", "protein_name": "Laminin subunit alpha-1", "gene_name": "LAMA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6N6-1", "protein_name": "Laminin subunit gamma-3", "gene_name": "LAMC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13753-1", "protein_name": "Laminin subunit gamma-2", "gene_name": "LAMC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11047-1", "protein_name": "Laminin subunit gamma-1", "gene_name": "LAMC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46939-1", "protein_name": "Utrophin", "gene_name": "UTRN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NY99-1", "protein_name": "Gamma-2-syntrophin", "gene_name": "SNTG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13751-1", "protein_name": "Laminin subunit beta-3", "gene_name": "LAMB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16787-2", "protein_name": "Laminin subunit alpha-3", "gene_name": "LAMA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16363-1", "protein_name": "Laminin subunit alpha-4", "gene_name": "LAMA4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15230-1", "protein_name": "Laminin subunit alpha-5", "gene_name": "LAMA5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4J8-1", "protein_name": "Dystrobrevin alpha", "gene_name": "DTNA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63267-1", "protein_name": "Actin, gamma-enteric smooth muscle", "gene_name": "ACTG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68032-1", "protein_name": "Actin, alpha cardiac muscle 1", "gene_name": "ACTC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13884-1", "protein_name": "Beta-1-syntrophin", "gene_name": "SNTB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13424-1", "protein_name": "Alpha-1-syntrophin", "gene_name": "SNTA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13326-1", "protein_name": "Gamma-sarcoglycan", "gene_name": "SGCG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63261-1", "protein_name": "Actin, cytoplasmic 2", "gene_name": "ACTG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62736-1", "protein_name": "Actin, aortic smooth muscle", "gene_name": "ACTA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11532-1", "protein_name": "Dystrophin", "gene_name": "DMD", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13425-1", "protein_name": "Beta-2-syntrophin", "gene_name": "SNTB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13474-1", "protein_name": "Dystrophin-related protein 2", "gene_name": "DRP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55268-1", "protein_name": "Laminin subunit beta-2", "gene_name": "LAMB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60941-1", "protein_name": "Dystrobrevin beta", "gene_name": "DTNB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68133-1", "protein_name": "Actin, alpha skeletal muscle", "gene_name": "ACTA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60709-1", "protein_name": "Actin, cytoplasmic 1", "gene_name": "ACTB", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P98160", "url": "https://www.uniprot.org/uniprotkb/P98160" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.15175026", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 36 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A novel missense mutation in the galactosyltransferase-I (B4GALT7) gene in a family exhibiting facioskeletal anomalies and Ehlers-Danlos syndrome resembling the progeroid type.", "journal": "American journal of medical genetics. Part A", "date": "2004", "authors": "Faiyaz-Ul-Haque M, Zaidi SH, Al-Ali M, Al-Mureikhi MS, Kennedy S, Al-Thani G, Tsui LC, Teebi AS", "reference": { "type": "PubMed", "id": "15211654", "url": "https://pubmed.ncbi.nlm.nih.gov/15211654" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P98160-1", "protein_name": "Basement membrane-specific heparan sulfate proteoglycan core protein", "gene_name": "HSPG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75056-1", "protein_name": "Syndecan-3", "gene_name": "SDC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00468-1", "protein_name": "Agrin", "gene_name": "AGRN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P21810-1", "protein_name": "Biglycan", "gene_name": "BGN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51654-1", "protein_name": "Glypican-3", "gene_name": "GPC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18827-1", "protein_name": "Syndecan-1", "gene_name": "SDC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95196-1", "protein_name": "Chondroitin sulfate proteoglycan 5", "gene_name": "CSPG5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31431-1", "protein_name": "Syndecan-4", "gene_name": "SDC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y625-1", "protein_name": "Glypican-6", "gene_name": "GPC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N158-1", "protein_name": "Glypican-2", "gene_name": "GPC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P34741-1", "protein_name": "Syndecan-2", "gene_name": "SDC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6UVK1-1", "protein_name": "Chondroitin sulfate proteoglycan 4", "gene_name": "CSPG4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78333-1", "protein_name": "Glypican-5", "gene_name": "GPC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35052-1", "protein_name": "Glypican-1", "gene_name": "GPC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13611-1", "protein_name": "Versican core protein", "gene_name": "VCAN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07585-1", "protein_name": "Decorin", "gene_name": "DCN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBV7-1", "protein_name": "Beta-1,4-galactosyltransferase 7", "gene_name": "B4GALT7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96GW7-1", "protein_name": "Brevican core protein", "gene_name": "BCAN", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75487-1", "protein_name": "Glypican-4", "gene_name": "GPC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14594-1", "protein_name": "Neurocan core protein", "gene_name": "NCAN", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P98160", "url": "https://www.uniprot.org/uniprotkb/P98160" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "snv": [ { "evidence": [ { "id": "Q9UBV7", "database": "BioMuta", "url": "https://hivelab.biochemistry.gwu.edu/biomuta/proteinview/Q9UBV7" }, { "id": "rs28937869", "database": "dbSNP", "url": "https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=rs28937869" }, { "id": "rs28937869", "database": "1000Genomes", "url": "https://www.ensembl.org/homo_sapiens/Variation/Explore?v=rs28937869" }, { "id": "rs28937869", "database": "ExAC", "url": "https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=rs28937869" }, { "id": "rs28937869", "database": "TOPMed", "url": "https://www.ncbi.nlm.nih.gov/snp/rs28937869#frequency_tab" }, { "id": "rs28937869", "database": "gnomAD", "url": "http://gnomad.broadinstitute.org/awesome?query=rs28937869" }, { "id": "1221956", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/1221956" }, { "id": "15211654", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/15211654" }, { "id": "1640425", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/1640425" }, { "id": "18158310", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/18158310" }, { "id": "23956117", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23956117" }, { "id": "24755949", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24755949" }, { "id": "26940150", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/26940150" }, { "id": "31278392", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/31278392" } ], "glycoeffect": [], "start_pos": 270, "end_pos": 270, "subjects_tested": "719", "subjects_positive": "1", "frequency": "0.1", "sequence_org": "R", "sequence_mut": "C", "comment": "Somatic mutation passed 1 filters: protein-of-interest(glycogene, glycosyltransferase).", "chr_id": "5", "chr_pos": "177608994", "ref_nt": "C", "alt_nt": "T", "minor_allelic_frequency": "", "site_lbl": "R270", "disease": [ { "disease_id": "DOID:11934", "recommended_name": { "id": "DOID:11934", "resource": "Disease Ontology", "url": "https://disease-ontology.org/term/DOID:11934", "name": "head and neck cancer", "description": "An organ system cancer that arises in the head or neck region. This region includes the nasal cavity, sinuses, lips, mouth, salivary glands, throat, or larynx." }, "synonyms": [ { "id": "DOID:11934", "resource": "Disease Ontology", "url": "https://disease-ontology.org/term/DOID:11934", "name": "head and neck neoplasm", "description": "" }, { "id": "DOID:11934", "resource": "Disease Ontology", "url": "https://disease-ontology.org/term/DOID:11934", "name": "head and neck tumours", "description": "" }, { "id": "DOID:11934", "resource": "Disease Ontology", "url": "https://disease-ontology.org/term/DOID:11934", "name": "head/neck neoplasm", "description": "" }, { "id": "DOID:11934", "resource": "Disease Ontology", "url": "https://disease-ontology.org/term/DOID:11934", "name": "tumor of head and neck", "description": "" } ], "unlinked_id_list": [ "DOID:1542" ], "evidence": [ { "id": "11934", "database": "AGR", "url": "https://www.alliancegenome.org/disease/DOID:11934" } ] }, { "disease_id": "DOID:0080738", "recommended_name": { "id": "DOID:0080738", "resource": "Disease Ontology", "url": "https://disease-ontology.org/term/DOID:0080738", "name": "Ehlers-Danlos syndrome spondylodysplastic type 1", "description": "An Ehlers-Danlos syndrome that is characterized by short stature, developmental anomalies of the forearm bones and elbow, and bowing of extremities, in addition to the classic stigmata of Ehlers-Danlos syndrome, including joint laxity, skin hyperextensibility, and poor wound healing and that has_material_basis_in homozygous or compound heterozygous mutation in the B4GALT7 gene on chromosome 5q35." }, "synonyms": [ { "id": "MONDO:0020682", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0020682", "name": "Ehlers-Danlos syndrome, spondylodysplastic type, 1", "description": "" }, { "id": "MONDO:0020682", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0020682", "name": "EDSSPD1", "description": "" }, { "id": "MONDO:0020682", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0020682", "name": "Ehlers-Danlos syndrome with Short stature and Limb anomalies", "description": "" }, { "id": "MONDO:0020682", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0020682", "name": "Ehlers-Danlos syndrome, progeroid type 1", "description": "" }, { "id": "MONDO:0020682", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0020682", "name": "Ehlers-Danlos syndrome, progeroid type, 1", "description": "" }, { "id": "MONDO:0020682", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0020682", "name": "Ehlers-Danlos syndrome, spondylodysplastic type, 1", "description": "" }, { "id": "MONDO:0020682", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0020682", "name": "PDS, defective biosynthesis of", "description": "" }, { "id": "MONDO:0020682", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0020682", "name": "XGPT deficiency", "description": "" }, { "id": "MONDO:0020682", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0020682", "name": "dermatan sulfate proteoglycan", "description": "" }, { "id": "MONDO:0020682", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0020682", "name": "dermatan sulphate proteoglycan", "description": "" }, { "id": "MONDO:0020682", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0020682", "name": "galactosyltransferase 1 deficiency", "description": "" }, { "id": "MONDO:0020682", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0020682", "name": "proteodermatan sulfate, defective biosynthesis of", "description": "" }, { "id": "MONDO:0020682", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0020682", "name": "xylosylprotein 4-Beta-galactosyltransferase deficiency", "description": "" }, { "id": "MIM:130070", "resource": "MIM", "url": "https://www.omim.org/entry/130070", "name": "Ehlers-Danlos syndrome, spondylodysplastic type, 1", "description": "Ehlers-Danlos syndrome, spondylodysplastic type, 1" } ], "unlinked_id_list": [], "evidence": [ { "id": "130070", "database": "MIM", "url": "https://www.omim.org/entry/130070" }, { "id": "B4GALT7", "database": "Genomics England", "url": "https://panelapp.genomicsengland.co.uk/panels/25/gene/B4GALT7/#!details" }, { "id": "11285", "database": "GlyCosmos", "url": "https://glycosmos.org/glycogenes/show/11285#disease" }, { "id": "0080738", "database": "AGR", "url": "https://www.alliancegenome.org/disease/DOID:0080738" } ] }, { "disease_id": "DOID:0080575", "recommended_name": { "id": "DOID:0080575", "resource": "Disease Ontology", "url": "https://disease-ontology.org/term/DOID:0080575", "name": "Larsen-like syndrome B3GAT3 type", "description": "A syndrome that is characterized by laxity, dislocations and contractures of the joints, short stature, foot deformities (e.g. clubfeet), broad tips of fingers and toes, short neck, dysmorphic facial features (hypertelorism, downslanting palpebral fissures, upturned nose with anteverted nares, high arched palate) and various cardiac malformations and has_material_basis_in homozygous mutation in the B3GAT3 gene on chromosome 11q12." }, "synonyms": [ { "id": "DOID:0080575", "resource": "Disease Ontology", "url": "https://disease-ontology.org/term/DOID:0080575", "name": "multiple joint dislocations-short stature-craniofacial dysmorphism-congenital heart defects syndrome", "description": "" }, { "id": "DOID:0080575", "resource": "Disease Ontology", "url": "https://disease-ontology.org/term/DOID:0080575", "name": "Larsen-like syndrome, B3GAT3 type", "description": "" }, { "id": "MONDO:0009511", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0009511", "name": "Larsen-like syndrome, B3GAT3 type", "description": "Larsen-like syndrome, B3GAT3 type is a rare, genetic, primary bone dysplasia characterized by laxity, dislocations and contractures of the joints, short stature, foot deformities (e.g. clubfeet), broad tips of fingers and toes, short neck, dysmorphic facial features (hypertelorism, downslanting palpebral fissures, upturned nose with anteverted nares, high arched palate) and various cardiac malformations. Severe disease is associated with multiple fractures, osteopenia, arachnodactyly and blue sclerae. A broad spectrum of additional features, including scoliosis, radio-ulnar synostosis, mild developmental delay, and various eye disorders (glaucoma, amblyopia, hyperopia, astigmatism, ptosis), are also reported." }, { "id": "MONDO:0009511", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0009511", "name": "multiple joint dislocations, short stature, craniofacial dysmorphism, with or without congenital heart defects", "description": "" }, { "id": "MONDO:0009511", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0009511", "name": "multiple joint dislocations-short stature-craniofacial dysmorphism-congenital heart defects syndrome", "description": "" }, { "id": "MONDO:0009511", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0009511", "name": "JDSCD", "description": "" }, { "id": "MONDO:0009511", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0009511", "name": "Larsen syndrome, autosomal recessive", "description": "" }, { "id": "MIM:245600", "resource": "MIM", "url": "https://www.omim.org/entry/245600", "name": "Multiple joint dislocations, short stature, and craniofacial dysmorphism with or without congenital heart defects", "description": "Multiple joint dislocations, short stature, and craniofacial dysmorphism with or without congenital heart defects" } ], "unlinked_id_list": [], "evidence": [ { "id": "0009511", "database": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0009511" }, { "id": "245600", "database": "MIM", "url": "https://www.omim.org/entry/245600" }, { "id": "B3GAT3", "database": "Genomics England", "url": "https://panelapp.genomicsengland.co.uk/panels/25/gene/B3GAT3/#!details" }, { "id": "26229", "database": "GlyCosmos", "url": "https://glycosmos.org/glycogenes/show/26229#disease" }, { "id": "0080575", "database": "AGR", "url": "https://www.alliancegenome.org/disease/DOID:0080575" } ] } ], "keywords": [ "biomuta", "somatic", "cancer", "disease", "ebi", "germline" ], "filter_code": "010000000000000000000.00000000000000.000000000001000000.00001.11.000.000", "uniprot_canonical_ac": "Q9UBV7-1" } ], "record_id": "pubmed.15211654", "abstract": "", "glycosylation": [], "mutagenesis": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 20 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A novel secreted, cell-surface glycoprotein containing multiple epidermal growth factor-like repeats and one CUB domain is highly expressed in primary osteoblasts and bones.", "journal": "The Journal of biological chemistry", "date": "2004", "authors": "Wu BT, Su YH, Tsai MT, Wasserman SM, Topper JN, Yang RB", "reference": { "type": "PubMed", "id": "15234972", "url": "https://pubmed.ncbi.nlm.nih.gov/15234972" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P98160-1", "protein_name": "Basement membrane-specific heparan sulfate proteoglycan core protein", "gene_name": "HSPG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15502-3", "protein_name": "Elastin", "gene_name": "ELN", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43897-1", "protein_name": "Tolloid-like protein 1", "gene_name": "TLL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13444-1", "protein_name": "Disintegrin and metalloproteinase domain-containing protein 15", "gene_name": "ADAM15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92542-1", "protein_name": "Nicastrin", "gene_name": "NCSTN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02751-15", "protein_name": "Fibronectin", "gene_name": "FN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04632-1", "protein_name": "Calpain small subunit 1", "gene_name": "CAPNS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08246-1", "protein_name": "Neutrophil elastase", "gene_name": "ELANE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92743-1", "protein_name": "Serine protease HTRA1", "gene_name": "HTRA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBM4-1", "protein_name": "Opticin", "gene_name": "OPTC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16112-1", "protein_name": "Aggrecan core protein", "gene_name": "ACAN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q66PY1-1", "protein_name": "Signal peptide, CUB and EGF-like domain-containing protein 3", "gene_name": "Scube3", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P03956-1", "protein_name": "Interstitial collagenase", "gene_name": "MMP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39900-1", "protein_name": "Macrophage metalloelastase", "gene_name": "MMP12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14543-1", "protein_name": "Nidogen-1", "gene_name": "NID1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWY4-1", "protein_name": "Signal peptide, CUB and EGF-like domain-containing protein 1", "gene_name": "SCUBE1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35613-1", "protein_name": "Basigin", "gene_name": "BSG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50281-1", "protein_name": "Matrix metalloproteinase-14", "gene_name": "MMP14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TE57-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 16", "gene_name": "ADAMTS16", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNA0-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 5", "gene_name": "ADAMTS5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6MZZ7-1", "protein_name": "Calpain-13", "gene_name": "CAPN13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07711-1", "protein_name": "Procathepsin L", "gene_name": "CTSL", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75808-1", "protein_name": "Calpain-15", "gene_name": "CAPN15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16070-1", "protein_name": "CD44 antigen", "gene_name": "CD44", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08311-1", "protein_name": "Cathepsin G", "gene_name": "CTSG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10451-1", "protein_name": "Osteopontin", "gene_name": "SPP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25774-1", "protein_name": "Cathepsin S", "gene_name": "CTSS", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15484-1", "protein_name": "Calpain-5", "gene_name": "CAPN5", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60911-1", "protein_name": "Cathepsin L2", "gene_name": "CTSV", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07942-1", "protein_name": "Laminin subunit beta-1", "gene_name": "LAMB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49862-1", "protein_name": "Kallikrein-7", "gene_name": "KLK7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13753-1", "protein_name": "Laminin subunit gamma-2", "gene_name": "LAMC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11047-1", "protein_name": "Laminin subunit gamma-1", "gene_name": "LAMC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P45452-1", "protein_name": "Collagenase 3", "gene_name": "MMP13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24347-1", "protein_name": "Stromelysin-3", "gene_name": "MMP11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09238-1", "protein_name": "Stromelysin-2", "gene_name": "MMP10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51511-1", "protein_name": "Matrix metalloproteinase-15", "gene_name": "MMP15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96L46-1", "protein_name": "Calpain small subunit 2", "gene_name": "CAPNS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13751-1", "protein_name": "Laminin subunit beta-3", "gene_name": "LAMB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16787-2", "protein_name": "Laminin subunit alpha-3", "gene_name": "LAMA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15230-1", "protein_name": "Laminin subunit alpha-5", "gene_name": "LAMA5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09237-1", "protein_name": "Matrilysin", "gene_name": "MMP7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6L7-1", "protein_name": "Tolloid-like protein 2", "gene_name": "TLL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42574-1", "protein_name": "Caspase-3", "gene_name": "CASP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00747-1", "protein_name": "Plasminogen", "gene_name": "PLG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14780-1", "protein_name": "Matrix metalloproteinase-9", "gene_name": "MMP9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07585-1", "protein_name": "Decorin", "gene_name": "DCN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6W3-1", "protein_name": "Calpain-7", "gene_name": "CAPN7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13497-1", "protein_name": "Bone morphogenetic protein 1", "gene_name": "BMP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "A6NHC0-1", "protein_name": "Calpain-8", "gene_name": "CAPN8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14815-1", "protein_name": "Calpain-9", "gene_name": "CAPN9", "tax_name": "Human" }, { "uniprot_canonical_ac": "A8MX76-1", "protein_name": "Calpain-14", "gene_name": "CAPN14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12830-1", "protein_name": "Cadherin-1", "gene_name": "CDH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZSI9-1", "protein_name": "Calpain-12", "gene_name": "CAPN12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17655-1", "protein_name": "Calpain-2 catalytic subunit", "gene_name": "CAPN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6Q1-1", "protein_name": "Calpain-6", "gene_name": "CAPN6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08253-1", "protein_name": "72 kDa type IV collagenase", "gene_name": "MMP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IX30-1", "protein_name": "Signal peptide, CUB and EGF-like domain-containing protein 3", "gene_name": "SCUBE3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96GW7-1", "protein_name": "Brevican core protein", "gene_name": "BCAN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TE60-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 18", "gene_name": "ADAMTS18", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75173-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 4", "gene_name": "ADAMTS4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P2N4-3", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 9", "gene_name": "ADAMTS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHI8-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 1", "gene_name": "ADAMTS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UP79-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 8", "gene_name": "ADAMTS8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20807-1", "protein_name": "Calpain-3", "gene_name": "CAPN3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07384-1", "protein_name": "Calpain-1 catalytic subunit", "gene_name": "CAPN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HC96-1", "protein_name": "Calpain-10", "gene_name": "CAPN10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P43235-1", "protein_name": "Cathepsin K", "gene_name": "CTSK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UMQ6-1", "protein_name": "Calpain-11", "gene_name": "CAPN11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35555-1", "protein_name": "Fibrillin-1", "gene_name": "FBN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35556-1", "protein_name": "Fibrillin-2", "gene_name": "FBN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q75N90-1", "protein_name": "Fibrillin-3", "gene_name": "FBN3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20810-1", "protein_name": "Calpastatin", "gene_name": "CAST", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08254-1", "protein_name": "Stromelysin-1", "gene_name": "MMP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22894-1", "protein_name": "Neutrophil collagenase", "gene_name": "MMP8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99542-1", "protein_name": "Matrix metalloproteinase-19", "gene_name": "MMP19", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60882-1", "protein_name": "Matrix metalloproteinase-20", "gene_name": "MMP20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IU80-4", "protein_name": "Transmembrane protease serine 6", "gene_name": "TMPRSS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49768-1", "protein_name": "Presenilin-1", "gene_name": "PSEN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14672-1", "protein_name": "Disintegrin and metalloproteinase domain-containing protein 10", "gene_name": "ADAM10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01023-1", "protein_name": "Alpha-2-macroglobulin", "gene_name": "A2M", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78325-1", "protein_name": "Disintegrin and metalloproteinase domain-containing protein 8", "gene_name": "ADAM8", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P98160", "url": "https://www.uniprot.org/uniprotkb/P98160" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.15234972", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 82 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Endorepellin causes endothelial cell disassembly of actin cytoskeleton and focal adhesions through alpha2beta1 integrin.", "journal": "The Journal of cell biology", "date": "2004", "authors": "Bix G, Fu J, Gonzalez EM, Macro L, Barker A, Campbell S, Zutter MM, Santoro SA, Kim JK, Hook M, Reed CC, Iozzo RV", "reference": { "type": "PubMed", "id": "15240572", "url": "https://pubmed.ncbi.nlm.nih.gov/15240572" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P98160-1", "protein_name": "Basement membrane-specific heparan sulfate proteoglycan core protein", "gene_name": "HSPG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51884-1", "protein_name": "Lumican", "gene_name": "LUM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02452-1", "protein_name": "Collagen alpha-1(I) chain", "gene_name": "COL1A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18084-1", "protein_name": "Integrin beta-5", "gene_name": "ITGB5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02671-1", "protein_name": "Fibrinogen alpha chain", "gene_name": "FGA", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00468-1", "protein_name": "Agrin", "gene_name": "AGRN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02751-15", "protein_name": "Fibronectin", "gene_name": "FN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08722-1", "protein_name": "Leukocyte surface antigen CD47", "gene_name": "CD47", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53420-1", "protein_name": "Collagen alpha-4(IV) chain", "gene_name": "COL4A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02679-1", "protein_name": "Fibrinogen gamma chain", "gene_name": "FGG", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86Y22-1", "protein_name": "Collagen alpha-1(XXIII) chain", "gene_name": "COL23A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20701-1", "protein_name": "Integrin alpha-L", "gene_name": "ITGAL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05362-1", "protein_name": "Intercellular adhesion molecule 1", "gene_name": "ICAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y624-1", "protein_name": "Junctional adhesion molecule A", "gene_name": "F11R", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35613-1", "protein_name": "Basigin", "gene_name": "BSG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P21815-1", "protein_name": "Integrin-binding sialoprotein", "gene_name": "IBSP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49747-1", "protein_name": "Cartilage oligomeric matrix protein", "gene_name": "COMP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04275-1", "protein_name": "von Willebrand factor", "gene_name": "VWF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07996-1", "protein_name": "Thrombospondin-1", "gene_name": "THBS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16070-1", "protein_name": "CD44 antigen", "gene_name": "CD44", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10451-1", "protein_name": "Osteopontin", "gene_name": "SPP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12110-1", "protein_name": "Collagen alpha-2(VI) chain", "gene_name": "COL6A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14031-1", "protein_name": "Collagen alpha-6(IV) chain", "gene_name": "COL4A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20908-1", "protein_name": "Collagen alpha-1(V) chain", "gene_name": "COL5A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02462-1", "protein_name": "Collagen alpha-1(IV) chain", "gene_name": "COL4A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27658-1", "protein_name": "Collagen alpha-1(VIII) chain", "gene_name": "COL8A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08572-1", "protein_name": "Collagen alpha-2(IV) chain", "gene_name": "COL4A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25067-1", "protein_name": "Collagen alpha-2(VIII) chain", "gene_name": "COL8A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20849-1", "protein_name": "Collagen alpha-1(IX) chain", "gene_name": "COL9A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25940-1", "protein_name": "Collagen alpha-3(V) chain", "gene_name": "COL5A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01955-1", "protein_name": "Collagen alpha-3(IV) chain", "gene_name": "COL4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16284-1", "protein_name": "Platelet endothelial cell adhesion molecule", "gene_name": "PECAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35968-1", "protein_name": "Vascular endothelial growth factor receptor 2", "gene_name": "KDR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13683-1", "protein_name": "Integrin alpha-7", "gene_name": "ITGA7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18564-1", "protein_name": "Integrin beta-6", "gene_name": "ITGB6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11215-1", "protein_name": "Integrin alpha-M", "gene_name": "ITGAM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26006-2", "protein_name": "Integrin alpha-3", "gene_name": "ITGA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08514-1", "protein_name": "Integrin alpha-IIb", "gene_name": "ITGA2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38570-1", "protein_name": "Integrin alpha-E", "gene_name": "ITGAE", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75578-1", "protein_name": "Integrin alpha-10", "gene_name": "ITGA10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06756-1", "protein_name": "Integrin alpha-V", "gene_name": "ITGAV", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53708-1", "protein_name": "Integrin alpha-8", "gene_name": "ITGA8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13349-1", "protein_name": "Integrin alpha-D", "gene_name": "ITGAD", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKX5-1", "protein_name": "Integrin alpha-11", "gene_name": "ITGA11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08648-1", "protein_name": "Integrin alpha-5", "gene_name": "ITGA5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13612-1", "protein_name": "Integrin alpha-4", "gene_name": "ITGA4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05556-1", "protein_name": "Integrin beta-1", "gene_name": "ITGB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02461-1", "protein_name": "Collagen alpha-1(III) chain", "gene_name": "COL3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07092-1", "protein_name": "Collagen alpha-1(XVI) chain", "gene_name": "COL16A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29400-1", "protein_name": "Collagen alpha-5(IV) chain", "gene_name": "COL4A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14055-1", "protein_name": "Collagen alpha-2(IX) chain", "gene_name": "COL9A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "A8TX70-1", "protein_name": "Collagen alpha-5(VI) chain", "gene_name": "COL6A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05997-1", "protein_name": "Collagen alpha-2(V) chain", "gene_name": "COL5A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "A6NMZ7-1", "protein_name": "Collagen alpha-6(VI) chain", "gene_name": "COL6A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12111-1", "protein_name": "Collagen alpha-3(VI) chain", "gene_name": "COL6A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5TAT6-1", "protein_name": "Collagen alpha-1(XIII) chain", "gene_name": "COL13A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08123-1", "protein_name": "Collagen alpha-2(I) chain", "gene_name": "COL1A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12109-1", "protein_name": "Collagen alpha-1(VI) chain", "gene_name": "COL6A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02458-2", "protein_name": "Collagen alpha-1(II) chain", "gene_name": "COL2A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02388-1", "protein_name": "Collagen alpha-1(VII) chain", "gene_name": "COL7A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14050-1", "protein_name": "Collagen alpha-3(IX) chain", "gene_name": "COL9A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02675-1", "protein_name": "Fibrinogen beta chain", "gene_name": "FGB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26010-1", "protein_name": "Integrin beta-7", "gene_name": "ITGB7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05106-1", "protein_name": "Integrin beta-3", "gene_name": "ITGB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q03692-1", "protein_name": "Collagen alpha-1(X) chain", "gene_name": "COL10A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12830-1", "protein_name": "Cadherin-1", "gene_name": "CDH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04004-1", "protein_name": "Vitronectin", "gene_name": "VTN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23229-1", "protein_name": "Integrin alpha-6", "gene_name": "ITGA6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14773-1", "protein_name": "Intercellular adhesion molecule 4", "gene_name": "ICAM4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13797-1", "protein_name": "Integrin alpha-9", "gene_name": "ITGA9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32942-1", "protein_name": "Intercellular adhesion molecule 3", "gene_name": "ICAM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UMF0-1", "protein_name": "Intercellular adhesion molecule 5", "gene_name": "ICAM5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20702-1", "protein_name": "Integrin alpha-X", "gene_name": "ITGAX", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BX67-1", "protein_name": "Junctional adhesion molecule C", "gene_name": "JAM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17301-1", "protein_name": "Integrin alpha-2", "gene_name": "ITGA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57087-1", "protein_name": "Junctional adhesion molecule B", "gene_name": "JAM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26012-1", "protein_name": "Integrin beta-8", "gene_name": "ITGB8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P56199-1", "protein_name": "Integrin alpha-1", "gene_name": "ITGA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19320-1", "protein_name": "Vascular cell adhesion protein 1", "gene_name": "VCAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35555-1", "protein_name": "Fibrillin-1", "gene_name": "FBN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13598-1", "protein_name": "Intercellular adhesion molecule 2", "gene_name": "ICAM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24821-1", "protein_name": "Tenascin", "gene_name": "TNC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39060-3", "protein_name": "Collagen alpha-1(XVIII) chain", "gene_name": "COL18A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05107-1", "protein_name": "Integrin beta-2", "gene_name": "ITGB2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P98160", "url": "https://www.uniprot.org/uniprotkb/P98160" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.15240572", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 84 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Analysis of the DXD motifs in human xylosyltransferase I required for enzyme activity.", "journal": "The Journal of biological chemistry", "date": "2004", "authors": "Gotting C, Muller S, Schottler M, Schon S, Prante C, Brinkmann T, Kuhn J, Kleesiek K", "reference": { "type": "PubMed", "id": "15294915", "url": "https://pubmed.ncbi.nlm.nih.gov/15294915" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P98160-1", "protein_name": "Basement membrane-specific heparan sulfate proteoglycan core protein", "gene_name": "HSPG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75056-1", "protein_name": "Syndecan-3", "gene_name": "SDC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00468-1", "protein_name": "Agrin", "gene_name": "AGRN", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75063-1", "protein_name": "Glycosaminoglycan xylosylkinase", "gene_name": "FAM20B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P21810-1", "protein_name": "Biglycan", "gene_name": "BGN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51654-1", "protein_name": "Glypican-3", "gene_name": "GPC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18827-1", "protein_name": "Syndecan-1", "gene_name": "SDC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P2W7-1", "protein_name": "Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1", "gene_name": "B3GAT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94766-1", "protein_name": "Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 3", "gene_name": "B3GAT3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPZ5-1", "protein_name": "Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 2", "gene_name": "B3GAT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95196-1", "protein_name": "Chondroitin sulfate proteoglycan 5", "gene_name": "CSPG5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31431-1", "protein_name": "Syndecan-4", "gene_name": "SDC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y625-1", "protein_name": "Glypican-6", "gene_name": "GPC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N158-1", "protein_name": "Glypican-2", "gene_name": "GPC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P34741-1", "protein_name": "Syndecan-2", "gene_name": "SDC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6UVK1-1", "protein_name": "Chondroitin sulfate proteoglycan 4", "gene_name": "CSPG4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78333-1", "protein_name": "Glypican-5", "gene_name": "GPC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35052-1", "protein_name": "Glypican-1", "gene_name": "GPC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13611-1", "protein_name": "Versican core protein", "gene_name": "VCAN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96L58-1", "protein_name": "Beta-1,3-galactosyltransferase 6", "gene_name": "B3GALT6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07585-1", "protein_name": "Decorin", "gene_name": "DCN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBV7-1", "protein_name": "Beta-1,4-galactosyltransferase 7", "gene_name": "B4GALT7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96GW7-1", "protein_name": "Brevican core protein", "gene_name": "BCAN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TE99-1", "protein_name": "2-phosphoxylose phosphatase 1", "gene_name": "PXYLP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H1B5-1", "protein_name": "Xylosyltransferase 2", "gene_name": "XYLT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NBZ7-1", "protein_name": "UDP-glucuronic acid decarboxylase 1", "gene_name": "UXS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86Y38-1", "protein_name": "Xylosyltransferase 1", "gene_name": "XYLT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75487-1", "protein_name": "Glypican-4", "gene_name": "GPC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14594-1", "protein_name": "Neurocan core protein", "gene_name": "NCAN", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P98160", "url": "https://www.uniprot.org/uniprotkb/P98160" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 314, "end_pos": 314, "sequence_org": "D", "sequence_mut": "G", "comment": "No effect.", "evidence": [ { "database": "UniProtKB", "id": "Q86Y38", "url": "https://www.uniprot.org/uniprotkb/Q86Y38" }, { "database": "PubMed", "id": "15294915", "url": "https://pubmed.ncbi.nlm.nih.gov/15294915" } ], "uniprot_canonical_ac": "Q86Y38-1" }, { "start_pos": 316, "end_pos": 316, "sequence_org": "D", "sequence_mut": "G", "comment": "No effect.", "evidence": [ { "database": "UniProtKB", "id": "Q86Y38", "url": "https://www.uniprot.org/uniprotkb/Q86Y38" }, { "database": "PubMed", "id": "15294915", "url": "https://pubmed.ncbi.nlm.nih.gov/15294915" } ], "uniprot_canonical_ac": "Q86Y38-1" }, { "start_pos": 745, "end_pos": 745, "sequence_org": "D", "sequence_mut": "E", "comment": "No effect.", "evidence": [ { "database": "UniProtKB", "id": "Q86Y38", "url": "https://www.uniprot.org/uniprotkb/Q86Y38" }, { "database": "PubMed", "id": "15294915", "url": "https://pubmed.ncbi.nlm.nih.gov/15294915" } ], "uniprot_canonical_ac": "Q86Y38-1" }, { "start_pos": 745, "end_pos": 745, "sequence_org": "D", "sequence_mut": "G", "comment": "Abolishes enzyme activity but does not affect UDP-binding.", "evidence": [ { "database": "UniProtKB", "id": "Q86Y38", "url": "https://www.uniprot.org/uniprotkb/Q86Y38" }, { "database": "PubMed", "id": "15294915", "url": "https://pubmed.ncbi.nlm.nih.gov/15294915" } ], "uniprot_canonical_ac": "Q86Y38-1" }, { "start_pos": 746, "end_pos": 746, "sequence_org": "W", "sequence_mut": "D", "comment": "Strongly reduced enzyme activity but does not affect UDP-binding.", "evidence": [ { "database": "UniProtKB", "id": "Q86Y38", "url": "https://www.uniprot.org/uniprotkb/Q86Y38" }, { "database": "PubMed", "id": "15294915", "url": "https://pubmed.ncbi.nlm.nih.gov/15294915" } ], "uniprot_canonical_ac": "Q86Y38-1" }, { "start_pos": 746, "end_pos": 746, "sequence_org": "W", "sequence_mut": "G", "comment": "Strongly reduced enzyme activity but does not affect UDP-binding.", "evidence": [ { "database": "UniProtKB", "id": "Q86Y38", "url": "https://www.uniprot.org/uniprotkb/Q86Y38" }, { "database": "PubMed", "id": "15294915", "url": "https://pubmed.ncbi.nlm.nih.gov/15294915" } ], "uniprot_canonical_ac": "Q86Y38-1" }, { "start_pos": 746, "end_pos": 746, "sequence_org": "W", "sequence_mut": "N", "comment": "Strongly reduced enzyme activity but does not affect UDP-binding.", "evidence": [ { "database": "UniProtKB", "id": "Q86Y38", "url": "https://www.uniprot.org/uniprotkb/Q86Y38" }, { "database": "PubMed", "id": "15294915", "url": "https://pubmed.ncbi.nlm.nih.gov/15294915" } ], "uniprot_canonical_ac": "Q86Y38-1" }, { "start_pos": 747, "end_pos": 747, "sequence_org": "D", "sequence_mut": "E", "comment": "Reduced enzyme activity but does not affect UDP-binding.", "evidence": [ { "database": "UniProtKB", "id": "Q86Y38", "url": "https://www.uniprot.org/uniprotkb/Q86Y38" }, { "database": "PubMed", "id": "15294915", "url": "https://pubmed.ncbi.nlm.nih.gov/15294915" } ], "uniprot_canonical_ac": "Q86Y38-1" }, { "start_pos": 747, "end_pos": 747, "sequence_org": "D", "sequence_mut": "G", "comment": "Reduced enzyme activity but does not affect UDP-binding.", "evidence": [ { "database": "UniProtKB", "id": "Q86Y38", "url": "https://www.uniprot.org/uniprotkb/Q86Y38" }, { "database": "PubMed", "id": "15294915", "url": "https://pubmed.ncbi.nlm.nih.gov/15294915" } ], "uniprot_canonical_ac": "Q86Y38-1" } ], "record_id": "pubmed.15294915", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 29 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Structural basis for interactions between tenascins and lectican C-type lectin domains: evidence for a crosslinking role for tenascins.", "journal": "Structure (London, England : 1993)", "date": "2004", "authors": "Lundell A, Olin AI, Morgelin M, al-Karadaghi S, Aspberg A, Logan DT", "reference": { "type": "PubMed", "id": "15296743", "url": "https://pubmed.ncbi.nlm.nih.gov/15296743" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P98160-1", "protein_name": "Basement membrane-specific heparan sulfate proteoglycan core protein", "gene_name": "HSPG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51884-1", "protein_name": "Lumican", "gene_name": "LUM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02452-1", "protein_name": "Collagen alpha-1(I) chain", "gene_name": "COL1A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18084-1", "protein_name": "Integrin beta-5", "gene_name": "ITGB5", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00468-1", "protein_name": "Agrin", "gene_name": "AGRN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02751-15", "protein_name": "Fibronectin", "gene_name": "FN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P21810-1", "protein_name": "Biglycan", "gene_name": "BGN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92752-1", "protein_name": "Tenascin-R", "gene_name": "TNR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQP3-1", "protein_name": "Tenascin-N", "gene_name": "TNN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53420-1", "protein_name": "Collagen alpha-4(IV) chain", "gene_name": "COL4A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05546-1", "protein_name": "Tenascin-R", "gene_name": "Tnr", "tax_name": "Rat" }, { "uniprot_canonical_ac": "P07897-1", "protein_name": "Aggrecan core protein", "gene_name": "Acan", "tax_name": "Rat" }, { "uniprot_canonical_ac": "Q06828-1", "protein_name": "Fibromodulin", "gene_name": "FMOD", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75096-1", "protein_name": "Low-density lipoprotein receptor-related protein 4", "gene_name": "LRP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10915-1", "protein_name": "Hyaluronan and proteoglycan link protein 1", "gene_name": "HAPLN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16112-1", "protein_name": "Aggrecan core protein", "gene_name": "ACAN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P21815-1", "protein_name": "Integrin-binding sialoprotein", "gene_name": "IBSP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49747-1", "protein_name": "Cartilage oligomeric matrix protein", "gene_name": "COMP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXN1-1", "protein_name": "Asporin", "gene_name": "ASPN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12110-1", "protein_name": "Collagen alpha-2(VI) chain", "gene_name": "COL6A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14031-1", "protein_name": "Collagen alpha-6(IV) chain", "gene_name": "COL4A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20908-1", "protein_name": "Collagen alpha-1(V) chain", "gene_name": "COL5A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02462-1", "protein_name": "Collagen alpha-1(IV) chain", "gene_name": "COL4A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08572-1", "protein_name": "Collagen alpha-2(IV) chain", "gene_name": "COL4A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20849-1", "protein_name": "Collagen alpha-1(IX) chain", "gene_name": "COL9A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25940-1", "protein_name": "Collagen alpha-3(V) chain", "gene_name": "COL5A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01955-1", "protein_name": "Collagen alpha-3(IV) chain", "gene_name": "COL4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14118-1", "protein_name": "Dystroglycan 1", "gene_name": "DAG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07942-1", "protein_name": "Laminin subunit beta-1", "gene_name": "LAMB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24043-1", "protein_name": "Laminin subunit alpha-2", "gene_name": "LAMA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25391-1", "protein_name": "Laminin subunit alpha-1", "gene_name": "LAMA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11047-1", "protein_name": "Laminin subunit gamma-1", "gene_name": "LAMC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10600-1", "protein_name": "Transforming growth factor beta-3 proprotein", "gene_name": "TGFB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13683-1", "protein_name": "Integrin alpha-7", "gene_name": "ITGA7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16787-2", "protein_name": "Laminin subunit alpha-3", "gene_name": "LAMA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18564-1", "protein_name": "Integrin beta-6", "gene_name": "ITGB6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16363-1", "protein_name": "Laminin subunit alpha-4", "gene_name": "LAMA4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15230-1", "protein_name": "Laminin subunit alpha-5", "gene_name": "LAMA5", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95460-1", "protein_name": "Matrilin-4", "gene_name": "MATN4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08514-1", "protein_name": "Integrin alpha-IIb", "gene_name": "ITGA2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06756-1", "protein_name": "Integrin alpha-V", "gene_name": "ITGAV", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53708-1", "protein_name": "Integrin alpha-8", "gene_name": "ITGA8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P21941-1", "protein_name": "Matrilin-1", "gene_name": "MATN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05556-1", "protein_name": "Integrin beta-1", "gene_name": "ITGB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02461-1", "protein_name": "Collagen alpha-1(III) chain", "gene_name": "COL3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29400-1", "protein_name": "Collagen alpha-5(IV) chain", "gene_name": "COL4A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14055-1", "protein_name": "Collagen alpha-2(IX) chain", "gene_name": "COL9A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09486-1", "protein_name": "SPARC", "gene_name": "SPARC", "tax_name": "Human" }, { "uniprot_canonical_ac": "A8TX70-1", "protein_name": "Collagen alpha-5(VI) chain", "gene_name": "COL6A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05997-1", "protein_name": "Collagen alpha-2(V) chain", "gene_name": "COL5A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "A6NMZ7-1", "protein_name": "Collagen alpha-6(VI) chain", "gene_name": "COL6A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12111-1", "protein_name": "Collagen alpha-3(VI) chain", "gene_name": "COL6A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08123-1", "protein_name": "Collagen alpha-2(I) chain", "gene_name": "COL1A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12109-1", "protein_name": "Collagen alpha-1(VI) chain", "gene_name": "COL6A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02458-2", "protein_name": "Collagen alpha-1(II) chain", "gene_name": "COL2A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14050-1", "protein_name": "Collagen alpha-3(IX) chain", "gene_name": "COL9A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05106-1", "protein_name": "Integrin beta-3", "gene_name": "ITGB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13611-1", "protein_name": "Versican core protein", "gene_name": "VCAN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07585-1", "protein_name": "Decorin", "gene_name": "DCN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04004-1", "protein_name": "Vitronectin", "gene_name": "VTN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NZW4-1", "protein_name": "Dentin sialophosphoprotein", "gene_name": "DSPP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13797-1", "protein_name": "Integrin alpha-9", "gene_name": "ITGA9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96GW7-1", "protein_name": "Brevican core protein", "gene_name": "BCAN", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15146-1", "protein_name": "Muscle, skeletal receptor tyrosine-protein kinase", "gene_name": "MUSK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13332-1", "protein_name": "Receptor-type tyrosine-protein phosphatase S", "gene_name": "PTPRS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20702-1", "protein_name": "Integrin alpha-X", "gene_name": "ITGAX", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17301-1", "protein_name": "Integrin alpha-2", "gene_name": "ITGA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15232-1", "protein_name": "Matrilin-3", "gene_name": "MATN3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22105-3", "protein_name": "Tenascin-X", "gene_name": "TNXB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13591-2", "protein_name": "Neural cell adhesion molecule 1", "gene_name": "NCAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13316-1", "protein_name": "Dentin matrix acidic phosphoprotein 1", "gene_name": "DMP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55268-1", "protein_name": "Laminin subunit beta-2", "gene_name": "LAMB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24821-1", "protein_name": "Tenascin", "gene_name": "TNC", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14594-1", "protein_name": "Neurocan core protein", "gene_name": "NCAN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05067-1", "protein_name": "Amyloid-beta precursor protein", "gene_name": "APP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01137-1", "protein_name": "Transforming growth factor beta-1 proprotein", "gene_name": "TGFB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61812-1", "protein_name": "Transforming growth factor beta-2 proprotein", "gene_name": "TGFB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05121-1", "protein_name": "Plasminogen activator inhibitor 1", "gene_name": "SERPINE1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P98160", "url": "https://www.uniprot.org/uniprotkb/P98160" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.15296743", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 78 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Pannexin membrane channels are mechanosensitive conduits for ATP.", "journal": "FEBS letters", "date": "2004-08-13", "authors": "Bao Li, Locovei Silviu, Dahl Gerhard", "reference": { "type": "PubMed", "id": "15304325", "url": "https://pubmed.ncbi.nlm.nih.gov/15304325" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P98160-1", "protein_name": "Basement membrane-specific heparan sulfate proteoglycan core protein", "gene_name": "HSPG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y490-1", "protein_name": "Talin-1", "gene_name": "TLN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22694-1", "protein_name": "cAMP-dependent protein kinase catalytic subunit beta", "gene_name": "PRKACB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50148-1", "protein_name": "Guanine nucleotide-binding protein G(q) subunit alpha", "gene_name": "GNAQ", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5JWF2-1", "protein_name": "Guanine nucleotide-binding protein G(s) subunit alpha isoforms XLas", "gene_name": "GNAS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04632-1", "protein_name": "Calpain small subunit 1", "gene_name": "CAPNS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42336-1", "protein_name": "Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit alpha isoform", "gene_name": "PIK3CA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62873-1", "protein_name": "Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1", "gene_name": "GNB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63211-1", "protein_name": "Guanine nucleotide-binding protein G(T) subunit gamma-T1", "gene_name": "GNGT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P59768-1", "protein_name": "Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2", "gene_name": "GNG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60262-1", "protein_name": "Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-7", "gene_name": "GNG7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50150-1", "protein_name": "Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-4", "gene_name": "GNG4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50151-1", "protein_name": "Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-10", "gene_name": "GNG10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P2W3-1", "protein_name": "Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-13", "gene_name": "GNG13", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95180-1", "protein_name": "Voltage-dependent T-type calcium channel subunit alpha-1H", "gene_name": "CACNA1H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P54289-1", "protein_name": "Voltage-dependent calcium channel subunit alpha-2/delta-1", "gene_name": "CACNA2D1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02641-1", "protein_name": "Voltage-dependent L-type calcium channel subunit beta-1", "gene_name": "CACNB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41231-1", "protein_name": "P2Y purinoceptor 2", "gene_name": "P2RY2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P85299-1", "protein_name": "Proline-rich protein 5", "gene_name": "PRR5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BPZ7-1", "protein_name": "Target of rapamycin complex 2 subunit MAPKAP1", "gene_name": "MAPKAP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50281-1", "protein_name": "Matrix metalloproteinase-14", "gene_name": "MMP14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18206-1", "protein_name": "Vinculin", "gene_name": "VCL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0DP23-1", "protein_name": "Calmodulin-1", "gene_name": "CALM1; CALM2; CALM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08289-1", "protein_name": "Voltage-dependent L-type calcium channel subunit beta-2", "gene_name": "CACNB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P54284-1", "protein_name": "Voltage-dependent L-type calcium channel subunit beta-3", "gene_name": "CACNB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10451-1", "protein_name": "Osteopontin", "gene_name": "SPP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16284-1", "protein_name": "Platelet endothelial cell adhesion molecule", "gene_name": "PECAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6R327-1", "protein_name": "Rapamycin-insensitive companion of mTOR", "gene_name": "RICTOR", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22612-1", "protein_name": "cAMP-dependent protein kinase catalytic subunit gamma", "gene_name": "PRKACG", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92508-1", "protein_name": "Piezo-type mechanosensitive ion channel component 1", "gene_name": "PIEZO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35968-1", "protein_name": "Vascular endothelial growth factor receptor 2", "gene_name": "KDR", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17302-1", "protein_name": "Gap junction alpha-1 protein", "gene_name": "GJA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96L46-1", "protein_name": "Calpain small subunit 2", "gene_name": "CAPNS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06756-1", "protein_name": "Integrin alpha-V", "gene_name": "ITGAV", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BVC4-1", "protein_name": "Target of rapamycin complex subunit LST8", "gene_name": "MLST8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96RD7-1", "protein_name": "Pannexin-1", "gene_name": "PANX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08648-1", "protein_name": "Integrin alpha-5", "gene_name": "ITGA5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35222-1", "protein_name": "Catenin beta-1", "gene_name": "CTNNB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13861-1", "protein_name": "cAMP-dependent protein kinase type II-alpha regulatory subunit", "gene_name": "PRKAR2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35318-1", "protein_name": "Pro-adrenomedullin", "gene_name": "ADM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29474-1", "protein_name": "Nitric oxide synthase 3", "gene_name": "NOS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17612-1", "protein_name": "cAMP-dependent protein kinase catalytic subunit alpha", "gene_name": "PRKACA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31749-1", "protein_name": "RAC-alpha serine/threonine-protein kinase", "gene_name": "AKT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42345-1", "protein_name": "Serine/threonine-protein kinase mTOR", "gene_name": "MTOR", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63218-1", "protein_name": "Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-5", "gene_name": "GNG5", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95622-1", "protein_name": "Adenylate cyclase type 5", "gene_name": "ADCY5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08828-1", "protein_name": "Adenylate cyclase type 1", "gene_name": "ADCY1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40145-1", "protein_name": "Adenylate cyclase type 8", "gene_name": "ADCY8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60266-1", "protein_name": "Adenylate cyclase type 3", "gene_name": "ADCY3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFM4-1", "protein_name": "Adenylate cyclase type 4", "gene_name": "ADCY4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00459-1", "protein_name": "Phosphatidylinositol 3-kinase regulatory subunit beta", "gene_name": "PIK3R2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10644-1", "protein_name": "cAMP-dependent protein kinase type I-alpha regulatory subunit", "gene_name": "PRKAR1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31323-1", "protein_name": "cAMP-dependent protein kinase type II-beta regulatory subunit", "gene_name": "PRKAR2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05556-1", "protein_name": "Integrin beta-1", "gene_name": "ITGB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16520-1", "protein_name": "Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-3", "gene_name": "GNB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99572-1", "protein_name": "P2X purinoceptor 7", "gene_name": "P2RX7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UK08-1", "protein_name": "Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-8", "gene_name": "GNG8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05106-1", "protein_name": "Integrin beta-3", "gene_name": "ITGB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBI6-1", "protein_name": "Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-12", "gene_name": "GNG12", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14775-1", "protein_name": "Guanine nucleotide-binding protein subunit beta-5", "gene_name": "GNB5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HBA0-1", "protein_name": "Transient receptor potential cation channel subfamily V member 4", "gene_name": "TRPV4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31321-1", "protein_name": "cAMP-dependent protein kinase type I-beta regulatory subunit", "gene_name": "PRKAR1B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33151-1", "protein_name": "Cadherin-5", "gene_name": "CDH5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17655-1", "protein_name": "Calpain-2 catalytic subunit", "gene_name": "CAPN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42338-1", "protein_name": "Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit beta isoform", "gene_name": "PIK3CB", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00329-1", "protein_name": "Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit delta isoform", "gene_name": "PIK3CD", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35916-2", "protein_name": "Vascular endothelial growth factor receptor 3", "gene_name": "FLT4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16513-1", "protein_name": "Serine/threonine-protein kinase N2", "gene_name": "PKN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60895-1", "protein_name": "Receptor activity-modifying protein 2", "gene_name": "RAMP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16602-1", "protein_name": "Calcitonin gene-related peptide type 1 receptor", "gene_name": "CALCRL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62955-1", "protein_name": "Voltage-dependent calcium channel gamma-7 subunit", "gene_name": "CACNG7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HAV0-1", "protein_name": "Guanine nucleotide-binding protein subunit beta-4", "gene_name": "GNB4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61952-1", "protein_name": "Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-11", "gene_name": "GNG11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62879-1", "protein_name": "Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2", "gene_name": "GNB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63215-1", "protein_name": "Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-3", "gene_name": "GNG3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29992-1", "protein_name": "Guanine nucleotide-binding protein subunit alpha-11", "gene_name": "GNA11", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14610-1", "protein_name": "Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-T2", "gene_name": "GNGT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60503-1", "protein_name": "Adenylate cyclase type 9", "gene_name": "ADCY9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06241-1", "protein_name": "Tyrosine-protein kinase Fyn", "gene_name": "FYN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51828-1", "protein_name": "Adenylate cyclase type 7", "gene_name": "ADCY7", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15530-1", "protein_name": "3-phosphoinositide-dependent protein kinase 1", "gene_name": "PDPK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43306-1", "protein_name": "Adenylate cyclase type 6", "gene_name": "ADCY6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08462-1", "protein_name": "Adenylate cyclase type 2", "gene_name": "ADCY2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P98160", "url": "https://www.uniprot.org/uniprotkb/P98160" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.15304325", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 83 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Functional assessment of alphaEbeta7/E-cadherin interactions in the steady state postnatal thymus.", "journal": "Clinical & developmental immunology", "date": "2004", "authors": "Prockop SE, Petrie HT", "reference": { "type": "PubMed", "id": "15330449", "url": "https://pubmed.ncbi.nlm.nih.gov/15330449" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P98160-1", "protein_name": "Basement membrane-specific heparan sulfate proteoglycan core protein", "gene_name": "HSPG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51884-1", "protein_name": "Lumican", "gene_name": "LUM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02452-1", "protein_name": "Collagen alpha-1(I) chain", "gene_name": "COL1A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18084-1", "protein_name": "Integrin beta-5", "gene_name": "ITGB5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02671-1", "protein_name": "Fibrinogen alpha chain", "gene_name": "FGA", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00468-1", "protein_name": "Agrin", "gene_name": "AGRN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02751-15", "protein_name": "Fibronectin", "gene_name": "FN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08722-1", "protein_name": "Leukocyte surface antigen CD47", "gene_name": "CD47", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53420-1", "protein_name": "Collagen alpha-4(IV) chain", "gene_name": "COL4A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02679-1", "protein_name": "Fibrinogen gamma chain", "gene_name": "FGG", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86Y22-1", "protein_name": "Collagen alpha-1(XXIII) chain", "gene_name": "COL23A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20701-1", "protein_name": "Integrin alpha-L", "gene_name": "ITGAL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05362-1", "protein_name": "Intercellular adhesion molecule 1", "gene_name": "ICAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y624-1", "protein_name": "Junctional adhesion molecule A", "gene_name": "F11R", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35613-1", "protein_name": "Basigin", "gene_name": "BSG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P21815-1", "protein_name": "Integrin-binding sialoprotein", "gene_name": "IBSP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49747-1", "protein_name": "Cartilage oligomeric matrix protein", "gene_name": "COMP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04275-1", "protein_name": "von Willebrand factor", "gene_name": "VWF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07996-1", "protein_name": "Thrombospondin-1", "gene_name": "THBS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16070-1", "protein_name": "CD44 antigen", "gene_name": "CD44", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10451-1", "protein_name": "Osteopontin", "gene_name": "SPP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12110-1", "protein_name": "Collagen alpha-2(VI) chain", "gene_name": "COL6A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14031-1", "protein_name": "Collagen alpha-6(IV) chain", "gene_name": "COL4A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20908-1", "protein_name": "Collagen alpha-1(V) chain", "gene_name": "COL5A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02462-1", "protein_name": "Collagen alpha-1(IV) chain", "gene_name": "COL4A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27658-1", "protein_name": "Collagen alpha-1(VIII) chain", "gene_name": "COL8A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08572-1", "protein_name": "Collagen alpha-2(IV) chain", "gene_name": "COL4A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25067-1", "protein_name": "Collagen alpha-2(VIII) chain", "gene_name": "COL8A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20849-1", "protein_name": "Collagen alpha-1(IX) chain", "gene_name": "COL9A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25940-1", "protein_name": "Collagen alpha-3(V) chain", "gene_name": "COL5A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01955-1", "protein_name": "Collagen alpha-3(IV) chain", "gene_name": "COL4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16284-1", "protein_name": "Platelet endothelial cell adhesion molecule", "gene_name": "PECAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35968-1", "protein_name": "Vascular endothelial growth factor receptor 2", "gene_name": "KDR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13683-1", "protein_name": "Integrin alpha-7", "gene_name": "ITGA7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18564-1", "protein_name": "Integrin beta-6", "gene_name": "ITGB6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11215-1", "protein_name": "Integrin alpha-M", "gene_name": "ITGAM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26006-2", "protein_name": "Integrin alpha-3", "gene_name": "ITGA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08514-1", "protein_name": "Integrin alpha-IIb", "gene_name": "ITGA2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38570-1", "protein_name": "Integrin alpha-E", "gene_name": "ITGAE", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75578-1", "protein_name": "Integrin alpha-10", "gene_name": "ITGA10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06756-1", "protein_name": "Integrin alpha-V", "gene_name": "ITGAV", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53708-1", "protein_name": "Integrin alpha-8", "gene_name": "ITGA8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13349-1", "protein_name": "Integrin alpha-D", "gene_name": "ITGAD", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKX5-1", "protein_name": "Integrin alpha-11", "gene_name": "ITGA11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08648-1", "protein_name": "Integrin alpha-5", "gene_name": "ITGA5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13612-1", "protein_name": "Integrin alpha-4", "gene_name": "ITGA4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05556-1", "protein_name": "Integrin beta-1", "gene_name": "ITGB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02461-1", "protein_name": "Collagen alpha-1(III) chain", "gene_name": "COL3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07092-1", "protein_name": "Collagen alpha-1(XVI) chain", "gene_name": "COL16A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29400-1", "protein_name": "Collagen alpha-5(IV) chain", "gene_name": "COL4A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14055-1", "protein_name": "Collagen alpha-2(IX) chain", "gene_name": "COL9A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "A8TX70-1", "protein_name": "Collagen alpha-5(VI) chain", "gene_name": "COL6A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05997-1", "protein_name": "Collagen alpha-2(V) chain", "gene_name": "COL5A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "A6NMZ7-1", "protein_name": "Collagen alpha-6(VI) chain", "gene_name": "COL6A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12111-1", "protein_name": "Collagen alpha-3(VI) chain", "gene_name": "COL6A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5TAT6-1", "protein_name": "Collagen alpha-1(XIII) chain", "gene_name": "COL13A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08123-1", "protein_name": "Collagen alpha-2(I) chain", "gene_name": "COL1A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12109-1", "protein_name": "Collagen alpha-1(VI) chain", "gene_name": "COL6A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02458-2", "protein_name": "Collagen alpha-1(II) chain", "gene_name": "COL2A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02388-1", "protein_name": "Collagen alpha-1(VII) chain", "gene_name": "COL7A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14050-1", "protein_name": "Collagen alpha-3(IX) chain", "gene_name": "COL9A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02675-1", "protein_name": "Fibrinogen beta chain", "gene_name": "FGB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26010-1", "protein_name": "Integrin beta-7", "gene_name": "ITGB7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05106-1", "protein_name": "Integrin beta-3", "gene_name": "ITGB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q03692-1", "protein_name": "Collagen alpha-1(X) chain", "gene_name": "COL10A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12830-1", "protein_name": "Cadherin-1", "gene_name": "CDH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04004-1", "protein_name": "Vitronectin", "gene_name": "VTN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23229-1", "protein_name": "Integrin alpha-6", "gene_name": "ITGA6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14773-1", "protein_name": "Intercellular adhesion molecule 4", "gene_name": "ICAM4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13797-1", "protein_name": "Integrin alpha-9", "gene_name": "ITGA9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32942-1", "protein_name": "Intercellular adhesion molecule 3", "gene_name": "ICAM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UMF0-1", "protein_name": "Intercellular adhesion molecule 5", "gene_name": "ICAM5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20702-1", "protein_name": "Integrin alpha-X", "gene_name": "ITGAX", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BX67-1", "protein_name": "Junctional adhesion molecule C", "gene_name": "JAM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17301-1", "protein_name": "Integrin alpha-2", "gene_name": "ITGA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57087-1", "protein_name": "Junctional adhesion molecule B", "gene_name": "JAM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26012-1", "protein_name": "Integrin beta-8", "gene_name": "ITGB8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P56199-1", "protein_name": "Integrin alpha-1", "gene_name": "ITGA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19320-1", "protein_name": "Vascular cell adhesion protein 1", "gene_name": "VCAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35555-1", "protein_name": "Fibrillin-1", "gene_name": "FBN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13598-1", "protein_name": "Intercellular adhesion molecule 2", "gene_name": "ICAM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24821-1", "protein_name": "Tenascin", "gene_name": "TNC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39060-3", "protein_name": "Collagen alpha-1(XVIII) chain", "gene_name": "COL18A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05107-1", "protein_name": "Integrin beta-2", "gene_name": "ITGB2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P98160", "url": "https://www.uniprot.org/uniprotkb/P98160" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.15330449", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 84 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Galectin-3 is induced in rheumatoid arthritis synovial fibroblasts after adhesion to cartilage oligomeric matrix protein.", "journal": "Annals of the rheumatic diseases", "date": "2005", "authors": "Neidhart M, Zaucke F, von Knoch R, Jungel A, Michel BA, Gay RE, Gay S", "reference": { "type": "PubMed", "id": "15345499", "url": "https://pubmed.ncbi.nlm.nih.gov/15345499" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P98160-1", "protein_name": "Basement membrane-specific heparan sulfate proteoglycan core protein", "gene_name": "HSPG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51884-1", "protein_name": "Lumican", "gene_name": "LUM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02452-1", "protein_name": "Collagen alpha-1(I) chain", "gene_name": "COL1A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18084-1", "protein_name": "Integrin beta-5", "gene_name": "ITGB5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02671-1", "protein_name": "Fibrinogen alpha chain", "gene_name": "FGA", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00468-1", "protein_name": "Agrin", "gene_name": "AGRN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02751-15", "protein_name": "Fibronectin", "gene_name": "FN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08722-1", "protein_name": "Leukocyte surface antigen CD47", "gene_name": "CD47", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53420-1", "protein_name": "Collagen alpha-4(IV) chain", "gene_name": "COL4A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02679-1", "protein_name": "Fibrinogen gamma chain", "gene_name": "FGG", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86Y22-1", "protein_name": "Collagen alpha-1(XXIII) chain", "gene_name": "COL23A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20701-1", "protein_name": "Integrin alpha-L", "gene_name": "ITGAL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05362-1", "protein_name": "Intercellular adhesion molecule 1", "gene_name": "ICAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y624-1", "protein_name": "Junctional adhesion molecule A", "gene_name": "F11R", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35613-1", "protein_name": "Basigin", "gene_name": "BSG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P21815-1", "protein_name": "Integrin-binding sialoprotein", "gene_name": "IBSP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49747-1", "protein_name": "Cartilage oligomeric matrix protein", "gene_name": "COMP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04275-1", "protein_name": "von Willebrand factor", "gene_name": "VWF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07996-1", "protein_name": "Thrombospondin-1", "gene_name": "THBS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16070-1", "protein_name": "CD44 antigen", "gene_name": "CD44", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10451-1", "protein_name": "Osteopontin", "gene_name": "SPP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12110-1", "protein_name": "Collagen alpha-2(VI) chain", "gene_name": "COL6A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14031-1", "protein_name": "Collagen alpha-6(IV) chain", "gene_name": "COL4A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20908-1", "protein_name": "Collagen alpha-1(V) chain", "gene_name": "COL5A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02462-1", "protein_name": "Collagen alpha-1(IV) chain", "gene_name": "COL4A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27658-1", "protein_name": "Collagen alpha-1(VIII) chain", "gene_name": "COL8A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08572-1", "protein_name": "Collagen alpha-2(IV) chain", "gene_name": "COL4A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25067-1", "protein_name": "Collagen alpha-2(VIII) chain", "gene_name": "COL8A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20849-1", "protein_name": "Collagen alpha-1(IX) chain", "gene_name": "COL9A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25940-1", "protein_name": "Collagen alpha-3(V) chain", "gene_name": "COL5A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01955-1", "protein_name": "Collagen alpha-3(IV) chain", "gene_name": "COL4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16284-1", "protein_name": "Platelet endothelial cell adhesion molecule", "gene_name": "PECAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35968-1", "protein_name": "Vascular endothelial growth factor receptor 2", "gene_name": "KDR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13683-1", "protein_name": "Integrin alpha-7", "gene_name": "ITGA7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18564-1", "protein_name": "Integrin beta-6", "gene_name": "ITGB6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11215-1", "protein_name": "Integrin alpha-M", "gene_name": "ITGAM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26006-2", "protein_name": "Integrin alpha-3", "gene_name": "ITGA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08514-1", "protein_name": "Integrin alpha-IIb", "gene_name": "ITGA2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38570-1", "protein_name": "Integrin alpha-E", "gene_name": "ITGAE", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75578-1", "protein_name": "Integrin alpha-10", "gene_name": "ITGA10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06756-1", "protein_name": "Integrin alpha-V", "gene_name": "ITGAV", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53708-1", "protein_name": "Integrin alpha-8", "gene_name": "ITGA8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13349-1", "protein_name": "Integrin alpha-D", "gene_name": "ITGAD", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKX5-1", "protein_name": "Integrin alpha-11", "gene_name": "ITGA11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08648-1", "protein_name": "Integrin alpha-5", "gene_name": "ITGA5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13612-1", "protein_name": "Integrin alpha-4", "gene_name": "ITGA4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05556-1", "protein_name": "Integrin beta-1", "gene_name": "ITGB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02461-1", "protein_name": "Collagen alpha-1(III) chain", "gene_name": "COL3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07092-1", "protein_name": "Collagen alpha-1(XVI) chain", "gene_name": "COL16A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29400-1", "protein_name": "Collagen alpha-5(IV) chain", "gene_name": "COL4A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14055-1", "protein_name": "Collagen alpha-2(IX) chain", "gene_name": "COL9A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "A8TX70-1", "protein_name": "Collagen alpha-5(VI) chain", "gene_name": "COL6A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05997-1", "protein_name": "Collagen alpha-2(V) chain", "gene_name": "COL5A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "A6NMZ7-1", "protein_name": "Collagen alpha-6(VI) chain", "gene_name": "COL6A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12111-1", "protein_name": "Collagen alpha-3(VI) chain", "gene_name": "COL6A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5TAT6-1", "protein_name": "Collagen alpha-1(XIII) chain", "gene_name": "COL13A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08123-1", "protein_name": "Collagen alpha-2(I) chain", "gene_name": "COL1A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12109-1", "protein_name": "Collagen alpha-1(VI) chain", "gene_name": "COL6A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02458-2", "protein_name": "Collagen alpha-1(II) chain", "gene_name": "COL2A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02388-1", "protein_name": "Collagen alpha-1(VII) chain", "gene_name": "COL7A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14050-1", "protein_name": "Collagen alpha-3(IX) chain", "gene_name": "COL9A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02675-1", "protein_name": "Fibrinogen beta chain", "gene_name": "FGB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26010-1", "protein_name": "Integrin beta-7", "gene_name": "ITGB7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05106-1", "protein_name": "Integrin beta-3", "gene_name": "ITGB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q03692-1", "protein_name": "Collagen alpha-1(X) chain", "gene_name": "COL10A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12830-1", "protein_name": "Cadherin-1", "gene_name": "CDH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04004-1", "protein_name": "Vitronectin", "gene_name": "VTN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23229-1", "protein_name": "Integrin alpha-6", "gene_name": "ITGA6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14773-1", "protein_name": "Intercellular adhesion molecule 4", "gene_name": "ICAM4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13797-1", "protein_name": "Integrin alpha-9", "gene_name": "ITGA9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32942-1", "protein_name": "Intercellular adhesion molecule 3", "gene_name": "ICAM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UMF0-1", "protein_name": "Intercellular adhesion molecule 5", "gene_name": "ICAM5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20702-1", "protein_name": "Integrin alpha-X", "gene_name": "ITGAX", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BX67-1", "protein_name": "Junctional adhesion molecule C", "gene_name": "JAM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17301-1", "protein_name": "Integrin alpha-2", "gene_name": "ITGA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57087-1", "protein_name": "Junctional adhesion molecule B", "gene_name": "JAM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26012-1", "protein_name": "Integrin beta-8", "gene_name": "ITGB8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P56199-1", "protein_name": "Integrin alpha-1", "gene_name": "ITGA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19320-1", "protein_name": "Vascular cell adhesion protein 1", "gene_name": "VCAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35555-1", "protein_name": "Fibrillin-1", "gene_name": "FBN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13598-1", "protein_name": "Intercellular adhesion molecule 2", "gene_name": "ICAM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24821-1", "protein_name": "Tenascin", "gene_name": "TNC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39060-3", "protein_name": "Collagen alpha-1(XVIII) chain", "gene_name": "COL18A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05107-1", "protein_name": "Integrin beta-2", "gene_name": "ITGB2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P98160", "url": "https://www.uniprot.org/uniprotkb/P98160" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.15345499", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 84 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Identification of all-trans-retinol:all-trans-13,14-dihydroretinol saturase.", "journal": "The Journal of biological chemistry", "date": "2004", "authors": "Moise AR, Kuksa V, Imanishi Y, Palczewski K", "reference": { "type": "PubMed", "id": "15358783", "url": "https://pubmed.ncbi.nlm.nih.gov/15358783" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P98160-1", "protein_name": "Basement membrane-specific heparan sulfate proteoglycan core protein", "gene_name": "HSPG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02753-1", "protein_name": "Retinol-binding protein 4", "gene_name": "RBP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75056-1", "protein_name": "Syndecan-3", "gene_name": "SDC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00468-1", "protein_name": "Agrin", "gene_name": "AGRN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17516-1", "protein_name": "Aldo-keto reductase family 1 member C4", "gene_name": "AKR1C4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04114-1", "protein_name": "Apolipoprotein B-100", "gene_name": "APOB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07954-1", "protein_name": "Prolow-density lipoprotein receptor-related protein 1", "gene_name": "LRP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95445-1", "protein_name": "Apolipoprotein M", "gene_name": "APOM", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q04828-1", "protein_name": "Aldo-keto reductase family 1 member C1", "gene_name": "AKR1C1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02655-1", "protein_name": "Apolipoprotein C-II", "gene_name": "APOC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42330-1", "protein_name": "Aldo-keto reductase family 1 member C3", "gene_name": "AKR1C3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04118-1", "protein_name": "Colipase", "gene_name": "CLPS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51654-1", "protein_name": "Glypican-3", "gene_name": "GPC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95237-1", "protein_name": "Lecithin retinol acyltransferase", "gene_name": "LRAT", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09455-1", "protein_name": "Retinol-binding protein 1", "gene_name": "RBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TC12-1", "protein_name": "Retinol dehydrogenase 11", "gene_name": "RDH11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50120-1", "protein_name": "Retinol-binding protein 2", "gene_name": "RBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6NUM9-1", "protein_name": "All-trans-retinol 13,14-reductase", "gene_name": "RETSAT", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18827-1", "protein_name": "Syndecan-1", "gene_name": "SDC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02656-1", "protein_name": "Apolipoprotein C-III", "gene_name": "APOC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02649-1", "protein_name": "Apolipoprotein E", "gene_name": "APOE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HAY6-1", "protein_name": "Beta,beta-carotene 15,15'-dioxygenase", "gene_name": "BCO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02766-1", "protein_name": "Transthyretin", "gene_name": "TTR", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31431-1", "protein_name": "Syndecan-4", "gene_name": "SDC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16233-1", "protein_name": "Pancreatic triacylglycerol lipase", "gene_name": "PNLIP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y625-1", "protein_name": "Glypican-6", "gene_name": "GPC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N158-1", "protein_name": "Glypican-2", "gene_name": "GPC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y561-1", "protein_name": "Low-density lipoprotein receptor-related protein 12", "gene_name": "LRP12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P98164-1", "protein_name": "Low-density lipoprotein receptor-related protein 2", "gene_name": "LRP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02652-1", "protein_name": "Apolipoprotein A-II", "gene_name": "APOA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14114-1", "protein_name": "Low-density lipoprotein receptor-related protein 8", "gene_name": "LRP8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06727-1", "protein_name": "Apolipoprotein A-IV", "gene_name": "APOA4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01130-1", "protein_name": "Low-density lipoprotein receptor", "gene_name": "LDLR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q64FW2-1", "protein_name": "All-trans-retinol 13,14-reductase", "gene_name": "Retsat", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P34741-1", "protein_name": "Syndecan-2", "gene_name": "SDC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78333-1", "protein_name": "Glypican-5", "gene_name": "GPC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35052-1", "protein_name": "Glypican-1", "gene_name": "GPC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P1J6-1", "protein_name": "Phospholipase B1, membrane-associated", "gene_name": "PLB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BYV7-1", "protein_name": "Carotenoid-cleaving dioxygenase, mitochondrial", "gene_name": "BCO2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75487-1", "protein_name": "Glypican-4", "gene_name": "GPC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IV16-1", "protein_name": "Glycosylphosphatidylinositol-anchored high density lipoprotein-binding protein 1", "gene_name": "GPIHBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06858-1", "protein_name": "Lipoprotein lipase", "gene_name": "LPL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z4F1-1", "protein_name": "Low-density lipoprotein receptor-related protein 10", "gene_name": "LRP10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02647-1", "protein_name": "Apolipoprotein A-I", "gene_name": "APOA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60218-1", "protein_name": "Aldo-keto reductase family 1 member B10", "gene_name": "AKR1B10", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P98160", "url": "https://www.uniprot.org/uniprotkb/P98160" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.15358783", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 45 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The fibril-associated collagen IX provides a novel mechanism for cell adhesion to cartilaginous matrix.", "journal": "The Journal of biological chemistry", "date": "2004", "authors": "Kapyla J, Jaalinoja J, Tulla M, Ylostalo J, Nissinen L, Viitasalo T, Vehvilainen P, Marjomaki V, Nykvist P, Saamanen AM, Farndale RW, Birk DE, Ala-Kokko L, Heino J", "reference": { "type": "PubMed", "id": "15383545", "url": "https://pubmed.ncbi.nlm.nih.gov/15383545" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P98160-1", "protein_name": "Basement membrane-specific heparan sulfate proteoglycan core protein", "gene_name": "HSPG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51884-1", "protein_name": "Lumican", "gene_name": "LUM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02452-1", "protein_name": "Collagen alpha-1(I) chain", "gene_name": "COL1A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18084-1", "protein_name": "Integrin beta-5", "gene_name": "ITGB5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02671-1", "protein_name": "Fibrinogen alpha chain", "gene_name": "FGA", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00468-1", "protein_name": "Agrin", "gene_name": "AGRN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02751-15", "protein_name": "Fibronectin", "gene_name": "FN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08722-1", "protein_name": "Leukocyte surface antigen CD47", "gene_name": "CD47", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53420-1", "protein_name": "Collagen alpha-4(IV) chain", "gene_name": "COL4A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02679-1", "protein_name": "Fibrinogen gamma chain", "gene_name": "FGG", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86Y22-1", "protein_name": "Collagen alpha-1(XXIII) chain", "gene_name": "COL23A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20701-1", "protein_name": "Integrin alpha-L", "gene_name": "ITGAL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05362-1", "protein_name": "Intercellular adhesion molecule 1", "gene_name": "ICAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y624-1", "protein_name": "Junctional adhesion molecule A", "gene_name": "F11R", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35613-1", "protein_name": "Basigin", "gene_name": "BSG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P21815-1", "protein_name": "Integrin-binding sialoprotein", "gene_name": "IBSP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49747-1", "protein_name": "Cartilage oligomeric matrix protein", "gene_name": "COMP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04275-1", "protein_name": "von Willebrand factor", "gene_name": "VWF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07996-1", "protein_name": "Thrombospondin-1", "gene_name": "THBS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16070-1", "protein_name": "CD44 antigen", "gene_name": "CD44", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10451-1", "protein_name": "Osteopontin", "gene_name": "SPP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12110-1", "protein_name": "Collagen alpha-2(VI) chain", "gene_name": "COL6A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14031-1", "protein_name": "Collagen alpha-6(IV) chain", "gene_name": "COL4A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20908-1", "protein_name": "Collagen alpha-1(V) chain", "gene_name": "COL5A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02462-1", "protein_name": "Collagen alpha-1(IV) chain", "gene_name": "COL4A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27658-1", "protein_name": "Collagen alpha-1(VIII) chain", "gene_name": "COL8A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08572-1", "protein_name": "Collagen alpha-2(IV) chain", "gene_name": "COL4A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25067-1", "protein_name": "Collagen alpha-2(VIII) chain", "gene_name": "COL8A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20849-1", "protein_name": "Collagen alpha-1(IX) chain", "gene_name": "COL9A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25940-1", "protein_name": "Collagen alpha-3(V) chain", "gene_name": "COL5A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01955-1", "protein_name": "Collagen alpha-3(IV) chain", "gene_name": "COL4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16284-1", "protein_name": "Platelet endothelial cell adhesion molecule", "gene_name": "PECAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35968-1", "protein_name": "Vascular endothelial growth factor receptor 2", "gene_name": "KDR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13683-1", "protein_name": "Integrin alpha-7", "gene_name": "ITGA7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18564-1", "protein_name": "Integrin beta-6", "gene_name": "ITGB6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11215-1", "protein_name": "Integrin alpha-M", "gene_name": "ITGAM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26006-2", "protein_name": "Integrin alpha-3", "gene_name": "ITGA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08514-1", "protein_name": "Integrin alpha-IIb", "gene_name": "ITGA2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38570-1", "protein_name": "Integrin alpha-E", "gene_name": "ITGAE", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75578-1", "protein_name": "Integrin alpha-10", "gene_name": "ITGA10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06756-1", "protein_name": "Integrin alpha-V", "gene_name": "ITGAV", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53708-1", "protein_name": "Integrin alpha-8", "gene_name": "ITGA8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13349-1", "protein_name": "Integrin alpha-D", "gene_name": "ITGAD", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKX5-1", "protein_name": "Integrin alpha-11", "gene_name": "ITGA11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08648-1", "protein_name": "Integrin alpha-5", "gene_name": "ITGA5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13612-1", "protein_name": "Integrin alpha-4", "gene_name": "ITGA4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05556-1", "protein_name": "Integrin beta-1", "gene_name": "ITGB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02461-1", "protein_name": "Collagen alpha-1(III) chain", "gene_name": "COL3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07092-1", "protein_name": "Collagen alpha-1(XVI) chain", "gene_name": "COL16A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29400-1", "protein_name": "Collagen alpha-5(IV) chain", "gene_name": "COL4A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14055-1", "protein_name": "Collagen alpha-2(IX) chain", "gene_name": "COL9A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "A8TX70-1", "protein_name": "Collagen alpha-5(VI) chain", "gene_name": "COL6A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05997-1", "protein_name": "Collagen alpha-2(V) chain", "gene_name": "COL5A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "A6NMZ7-1", "protein_name": "Collagen alpha-6(VI) chain", "gene_name": "COL6A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12111-1", "protein_name": "Collagen alpha-3(VI) chain", "gene_name": "COL6A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5TAT6-1", "protein_name": "Collagen alpha-1(XIII) chain", "gene_name": "COL13A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08123-1", "protein_name": "Collagen alpha-2(I) chain", "gene_name": "COL1A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12109-1", "protein_name": "Collagen alpha-1(VI) chain", "gene_name": "COL6A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02458-2", "protein_name": "Collagen alpha-1(II) chain", "gene_name": "COL2A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02388-1", "protein_name": "Collagen alpha-1(VII) chain", "gene_name": "COL7A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14050-1", "protein_name": "Collagen alpha-3(IX) chain", "gene_name": "COL9A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02675-1", "protein_name": "Fibrinogen beta chain", "gene_name": "FGB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26010-1", "protein_name": "Integrin beta-7", "gene_name": "ITGB7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05106-1", "protein_name": "Integrin beta-3", "gene_name": "ITGB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q03692-1", "protein_name": "Collagen alpha-1(X) chain", "gene_name": "COL10A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12830-1", "protein_name": "Cadherin-1", "gene_name": "CDH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04004-1", "protein_name": "Vitronectin", "gene_name": "VTN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23229-1", "protein_name": "Integrin alpha-6", "gene_name": "ITGA6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14773-1", "protein_name": "Intercellular adhesion molecule 4", "gene_name": "ICAM4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13797-1", "protein_name": "Integrin alpha-9", "gene_name": "ITGA9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32942-1", "protein_name": "Intercellular adhesion molecule 3", "gene_name": "ICAM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UMF0-1", "protein_name": "Intercellular adhesion molecule 5", "gene_name": "ICAM5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20702-1", "protein_name": "Integrin alpha-X", "gene_name": "ITGAX", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BX67-1", "protein_name": "Junctional adhesion molecule C", "gene_name": "JAM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17301-1", "protein_name": "Integrin alpha-2", "gene_name": "ITGA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57087-1", "protein_name": "Junctional adhesion molecule B", "gene_name": "JAM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26012-1", "protein_name": "Integrin beta-8", "gene_name": "ITGB8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P56199-1", "protein_name": "Integrin alpha-1", "gene_name": "ITGA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19320-1", "protein_name": "Vascular cell adhesion protein 1", "gene_name": "VCAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35555-1", "protein_name": "Fibrillin-1", "gene_name": "FBN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13598-1", "protein_name": "Intercellular adhesion molecule 2", "gene_name": "ICAM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24821-1", "protein_name": "Tenascin", "gene_name": "TNC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39060-3", "protein_name": "Collagen alpha-1(XVIII) chain", "gene_name": "COL18A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05107-1", "protein_name": "Integrin beta-2", "gene_name": "ITGB2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P98160", "url": "https://www.uniprot.org/uniprotkb/P98160" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.15383545", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 84 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Purification and partial characterization of cellular retinol-binding protein, type two, from human small intestine.", "journal": "The Journal of nutrition", "date": "1992", "authors": "Inagami S, Ong DE", "reference": { "type": "PubMed", "id": "1542003", "url": "https://pubmed.ncbi.nlm.nih.gov/1542003" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P98160-1", "protein_name": "Basement membrane-specific heparan sulfate proteoglycan core protein", "gene_name": "HSPG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02753-1", "protein_name": "Retinol-binding protein 4", "gene_name": "RBP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75056-1", "protein_name": "Syndecan-3", "gene_name": "SDC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00468-1", "protein_name": "Agrin", "gene_name": "AGRN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17516-1", "protein_name": "Aldo-keto reductase family 1 member C4", "gene_name": "AKR1C4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04114-1", "protein_name": "Apolipoprotein B-100", "gene_name": "APOB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07954-1", "protein_name": "Prolow-density lipoprotein receptor-related protein 1", "gene_name": "LRP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95445-1", "protein_name": "Apolipoprotein M", "gene_name": "APOM", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q04828-1", "protein_name": "Aldo-keto reductase family 1 member C1", "gene_name": "AKR1C1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02655-1", "protein_name": "Apolipoprotein C-II", "gene_name": "APOC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42330-1", "protein_name": "Aldo-keto reductase family 1 member C3", "gene_name": "AKR1C3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04118-1", "protein_name": "Colipase", "gene_name": "CLPS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51654-1", "protein_name": "Glypican-3", "gene_name": "GPC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95237-1", "protein_name": "Lecithin retinol acyltransferase", "gene_name": "LRAT", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09455-1", "protein_name": "Retinol-binding protein 1", "gene_name": "RBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TC12-1", "protein_name": "Retinol dehydrogenase 11", "gene_name": "RDH11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50120-1", "protein_name": "Retinol-binding protein 2", "gene_name": "RBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6NUM9-1", "protein_name": "All-trans-retinol 13,14-reductase", "gene_name": "RETSAT", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18827-1", "protein_name": "Syndecan-1", "gene_name": "SDC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02656-1", "protein_name": "Apolipoprotein C-III", "gene_name": "APOC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02649-1", "protein_name": "Apolipoprotein E", "gene_name": "APOE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HAY6-1", "protein_name": "Beta,beta-carotene 15,15'-dioxygenase", "gene_name": "BCO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02766-1", "protein_name": "Transthyretin", "gene_name": "TTR", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31431-1", "protein_name": "Syndecan-4", "gene_name": "SDC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16233-1", "protein_name": "Pancreatic triacylglycerol lipase", "gene_name": "PNLIP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y625-1", "protein_name": "Glypican-6", "gene_name": "GPC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N158-1", "protein_name": "Glypican-2", "gene_name": "GPC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y561-1", "protein_name": "Low-density lipoprotein receptor-related protein 12", "gene_name": "LRP12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P98164-1", "protein_name": "Low-density lipoprotein receptor-related protein 2", "gene_name": "LRP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02652-1", "protein_name": "Apolipoprotein A-II", "gene_name": "APOA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14114-1", "protein_name": "Low-density lipoprotein receptor-related protein 8", "gene_name": "LRP8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06727-1", "protein_name": "Apolipoprotein A-IV", "gene_name": "APOA4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01130-1", "protein_name": "Low-density lipoprotein receptor", "gene_name": "LDLR", "tax_name": "Human" }, { "uniprot_canonical_ac": "P34741-1", "protein_name": "Syndecan-2", "gene_name": "SDC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78333-1", "protein_name": "Glypican-5", "gene_name": "GPC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35052-1", "protein_name": "Glypican-1", "gene_name": "GPC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P1J6-1", "protein_name": "Phospholipase B1, membrane-associated", "gene_name": "PLB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BYV7-1", "protein_name": "Carotenoid-cleaving dioxygenase, mitochondrial", "gene_name": "BCO2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75487-1", "protein_name": "Glypican-4", "gene_name": "GPC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IV16-1", "protein_name": "Glycosylphosphatidylinositol-anchored high density lipoprotein-binding protein 1", "gene_name": "GPIHBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06858-1", "protein_name": "Lipoprotein lipase", "gene_name": "LPL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z4F1-1", "protein_name": "Low-density lipoprotein receptor-related protein 10", "gene_name": "LRP10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02647-1", "protein_name": "Apolipoprotein A-I", "gene_name": "APOA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60218-1", "protein_name": "Aldo-keto reductase family 1 member B10", "gene_name": "AKR1B10", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P98160", "url": "https://www.uniprot.org/uniprotkb/P98160" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.1542003", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 44 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Binding of the proteoglycan decorin to collagen type VI.", "journal": "The Journal of biological chemistry", "date": "1992", "authors": "Bidanset DJ, Guidry C, Rosenberg LC, Choi HU, Timpl R, Hook M", "reference": { "type": "PubMed", "id": "1544908", "url": "https://pubmed.ncbi.nlm.nih.gov/1544908" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P98160-1", "protein_name": "Basement membrane-specific heparan sulfate proteoglycan core protein", "gene_name": "HSPG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51884-1", "protein_name": "Lumican", "gene_name": "LUM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02452-1", "protein_name": "Collagen alpha-1(I) chain", "gene_name": "COL1A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18084-1", "protein_name": "Integrin beta-5", "gene_name": "ITGB5", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00468-1", "protein_name": "Agrin", "gene_name": "AGRN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02751-15", "protein_name": "Fibronectin", "gene_name": "FN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P21810-1", "protein_name": "Biglycan", "gene_name": "BGN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92752-1", "protein_name": "Tenascin-R", "gene_name": "TNR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQP3-1", "protein_name": "Tenascin-N", "gene_name": "TNN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53420-1", "protein_name": "Collagen alpha-4(IV) chain", "gene_name": "COL4A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q06828-1", "protein_name": "Fibromodulin", "gene_name": "FMOD", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75096-1", "protein_name": "Low-density lipoprotein receptor-related protein 4", "gene_name": "LRP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10915-1", "protein_name": "Hyaluronan and proteoglycan link protein 1", "gene_name": "HAPLN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16112-1", "protein_name": "Aggrecan core protein", "gene_name": "ACAN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P21815-1", "protein_name": "Integrin-binding sialoprotein", "gene_name": "IBSP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49747-1", "protein_name": "Cartilage oligomeric matrix protein", "gene_name": "COMP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXN1-1", "protein_name": "Asporin", "gene_name": "ASPN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12110-1", "protein_name": "Collagen alpha-2(VI) chain", "gene_name": "COL6A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14031-1", "protein_name": "Collagen alpha-6(IV) chain", "gene_name": "COL4A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20908-1", "protein_name": "Collagen alpha-1(V) chain", "gene_name": "COL5A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02462-1", "protein_name": "Collagen alpha-1(IV) chain", "gene_name": "COL4A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08572-1", "protein_name": "Collagen alpha-2(IV) chain", "gene_name": "COL4A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20849-1", "protein_name": "Collagen alpha-1(IX) chain", "gene_name": "COL9A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25940-1", "protein_name": "Collagen alpha-3(V) chain", "gene_name": "COL5A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01955-1", "protein_name": "Collagen alpha-3(IV) chain", "gene_name": "COL4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14118-1", "protein_name": "Dystroglycan 1", "gene_name": "DAG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07942-1", "protein_name": "Laminin subunit beta-1", "gene_name": "LAMB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24043-1", "protein_name": "Laminin subunit alpha-2", "gene_name": "LAMA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25391-1", "protein_name": "Laminin subunit alpha-1", "gene_name": "LAMA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11047-1", "protein_name": "Laminin subunit gamma-1", "gene_name": "LAMC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10600-1", "protein_name": "Transforming growth factor beta-3 proprotein", "gene_name": "TGFB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13683-1", "protein_name": "Integrin alpha-7", "gene_name": "ITGA7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16787-2", "protein_name": "Laminin subunit alpha-3", "gene_name": "LAMA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18564-1", "protein_name": "Integrin beta-6", "gene_name": "ITGB6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16363-1", "protein_name": "Laminin subunit alpha-4", "gene_name": "LAMA4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15230-1", "protein_name": "Laminin subunit alpha-5", "gene_name": "LAMA5", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95460-1", "protein_name": "Matrilin-4", "gene_name": "MATN4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08514-1", "protein_name": "Integrin alpha-IIb", "gene_name": "ITGA2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06756-1", "protein_name": "Integrin alpha-V", "gene_name": "ITGAV", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53708-1", "protein_name": "Integrin alpha-8", "gene_name": "ITGA8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P21941-1", "protein_name": "Matrilin-1", "gene_name": "MATN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05556-1", "protein_name": "Integrin beta-1", "gene_name": "ITGB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02461-1", "protein_name": "Collagen alpha-1(III) chain", "gene_name": "COL3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29400-1", "protein_name": "Collagen alpha-5(IV) chain", "gene_name": "COL4A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14055-1", "protein_name": "Collagen alpha-2(IX) chain", "gene_name": "COL9A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09486-1", "protein_name": "SPARC", "gene_name": "SPARC", "tax_name": "Human" }, { "uniprot_canonical_ac": "A8TX70-1", "protein_name": "Collagen alpha-5(VI) chain", "gene_name": "COL6A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05997-1", "protein_name": "Collagen alpha-2(V) chain", "gene_name": "COL5A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "A6NMZ7-1", "protein_name": "Collagen alpha-6(VI) chain", "gene_name": "COL6A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12111-1", "protein_name": "Collagen alpha-3(VI) chain", "gene_name": "COL6A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08123-1", "protein_name": "Collagen alpha-2(I) chain", "gene_name": "COL1A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12109-1", "protein_name": "Collagen alpha-1(VI) chain", "gene_name": "COL6A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02458-2", "protein_name": "Collagen alpha-1(II) chain", "gene_name": "COL2A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14050-1", "protein_name": "Collagen alpha-3(IX) chain", "gene_name": "COL9A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05106-1", "protein_name": "Integrin beta-3", "gene_name": "ITGB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13611-1", "protein_name": "Versican core protein", "gene_name": "VCAN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07585-1", "protein_name": "Decorin", "gene_name": "DCN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04004-1", "protein_name": "Vitronectin", "gene_name": "VTN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NZW4-1", "protein_name": "Dentin sialophosphoprotein", "gene_name": "DSPP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13797-1", "protein_name": "Integrin alpha-9", "gene_name": "ITGA9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96GW7-1", "protein_name": "Brevican core protein", "gene_name": "BCAN", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15146-1", "protein_name": "Muscle, skeletal receptor tyrosine-protein kinase", "gene_name": "MUSK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13332-1", "protein_name": "Receptor-type tyrosine-protein phosphatase S", "gene_name": "PTPRS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20702-1", "protein_name": "Integrin alpha-X", "gene_name": "ITGAX", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17301-1", "protein_name": "Integrin alpha-2", "gene_name": "ITGA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15232-1", "protein_name": "Matrilin-3", "gene_name": "MATN3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22105-3", "protein_name": "Tenascin-X", "gene_name": "TNXB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13591-2", "protein_name": "Neural cell adhesion molecule 1", "gene_name": "NCAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13316-1", "protein_name": "Dentin matrix acidic phosphoprotein 1", "gene_name": "DMP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55268-1", "protein_name": "Laminin subunit beta-2", "gene_name": "LAMB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24821-1", "protein_name": "Tenascin", "gene_name": "TNC", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14594-1", "protein_name": "Neurocan core protein", "gene_name": "NCAN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05067-1", "protein_name": "Amyloid-beta precursor protein", "gene_name": "APP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01137-1", "protein_name": "Transforming growth factor beta-1 proprotein", "gene_name": "TGFB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61812-1", "protein_name": "Transforming growth factor beta-2 proprotein", "gene_name": "TGFB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05121-1", "protein_name": "Plasminogen activator inhibitor 1", "gene_name": "SERPINE1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P98160", "url": "https://www.uniprot.org/uniprotkb/P98160" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.1544908", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 76 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Human xylosyltransferase I: functional and biochemical characterization of cysteine residues required for enzymic activity.", "journal": "The Biochemical journal", "date": "2005", "authors": "Muller S, Schottler M, Schon S, Prante C, Brinkmann T, Kuhn J, Gotting C, Kleesiek K", "reference": { "type": "PubMed", "id": "15461586", "url": "https://pubmed.ncbi.nlm.nih.gov/15461586" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P98160-1", "protein_name": "Basement membrane-specific heparan sulfate proteoglycan core protein", "gene_name": "HSPG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75056-1", "protein_name": "Syndecan-3", "gene_name": "SDC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00468-1", "protein_name": "Agrin", "gene_name": "AGRN", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75063-1", "protein_name": "Glycosaminoglycan xylosylkinase", "gene_name": "FAM20B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P21810-1", "protein_name": "Biglycan", "gene_name": "BGN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51654-1", "protein_name": "Glypican-3", "gene_name": "GPC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q811B1-1", "protein_name": "Xylosyltransferase 1", "gene_name": "Xylt1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P18827-1", "protein_name": "Syndecan-1", "gene_name": "SDC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P2W7-1", "protein_name": "Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1", "gene_name": "B3GAT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94766-1", "protein_name": "Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 3", "gene_name": "B3GAT3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPZ5-1", "protein_name": "Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 2", "gene_name": "B3GAT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95196-1", "protein_name": "Chondroitin sulfate proteoglycan 5", "gene_name": "CSPG5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31431-1", "protein_name": "Syndecan-4", "gene_name": "SDC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y625-1", "protein_name": "Glypican-6", "gene_name": "GPC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N158-1", "protein_name": "Glypican-2", "gene_name": "GPC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P34741-1", "protein_name": "Syndecan-2", "gene_name": "SDC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6UVK1-1", "protein_name": "Chondroitin sulfate proteoglycan 4", "gene_name": "CSPG4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78333-1", "protein_name": "Glypican-5", "gene_name": "GPC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35052-1", "protein_name": "Glypican-1", "gene_name": "GPC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13611-1", "protein_name": "Versican core protein", "gene_name": "VCAN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96L58-1", "protein_name": "Beta-1,3-galactosyltransferase 6", "gene_name": "B3GALT6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07585-1", "protein_name": "Decorin", "gene_name": "DCN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBV7-1", "protein_name": "Beta-1,4-galactosyltransferase 7", "gene_name": "B4GALT7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96GW7-1", "protein_name": "Brevican core protein", "gene_name": "BCAN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TE99-1", "protein_name": "2-phosphoxylose phosphatase 1", "gene_name": "PXYLP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H1B5-1", "protein_name": "Xylosyltransferase 2", "gene_name": "XYLT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NBZ7-1", "protein_name": "UDP-glucuronic acid decarboxylase 1", "gene_name": "UXS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86Y38-1", "protein_name": "Xylosyltransferase 1", "gene_name": "XYLT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75487-1", "protein_name": "Glypican-4", "gene_name": "GPC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14594-1", "protein_name": "Neurocan core protein", "gene_name": "NCAN", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P98160", "url": "https://www.uniprot.org/uniprotkb/P98160" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 257, "end_pos": 257, "sequence_org": "C", "sequence_mut": "A", "comment": "No effect.", "evidence": [ { "database": "UniProtKB", "id": "Q86Y38", "url": "https://www.uniprot.org/uniprotkb/Q86Y38" }, { "database": "PubMed", "id": "15461586", "url": "https://pubmed.ncbi.nlm.nih.gov/15461586" } ], "uniprot_canonical_ac": "Q86Y38-1" }, { "start_pos": 276, "end_pos": 276, "sequence_org": "C", "sequence_mut": "A", "comment": "Strongly reduced enzyme activity.", "evidence": [ { "database": "UniProtKB", "id": "Q86Y38", "url": "https://www.uniprot.org/uniprotkb/Q86Y38" }, { "database": "PubMed", "id": "15461586", "url": "https://pubmed.ncbi.nlm.nih.gov/15461586" } ], "uniprot_canonical_ac": "Q86Y38-1" }, { "start_pos": 285, "end_pos": 285, "sequence_org": "C", "sequence_mut": "A", "comment": "No effect.", "evidence": [ { "database": "UniProtKB", "id": "Q86Y38", "url": "https://www.uniprot.org/uniprotkb/Q86Y38" }, { "database": "PubMed", "id": "15461586", "url": "https://pubmed.ncbi.nlm.nih.gov/15461586" } ], "uniprot_canonical_ac": "Q86Y38-1" }, { "start_pos": 301, "end_pos": 301, "sequence_org": "C", "sequence_mut": "A", "comment": "No effect.", "evidence": [ { "database": "UniProtKB", "id": "Q86Y38", "url": "https://www.uniprot.org/uniprotkb/Q86Y38" }, { "database": "PubMed", "id": "15461586", "url": "https://pubmed.ncbi.nlm.nih.gov/15461586" } ], "uniprot_canonical_ac": "Q86Y38-1" }, { "start_pos": 471, "end_pos": 471, "sequence_org": "C", "sequence_mut": "A", "comment": "Strongly reduced enzyme activity.", "evidence": [ { "database": "UniProtKB", "id": "Q86Y38", "url": "https://www.uniprot.org/uniprotkb/Q86Y38" }, { "database": "PubMed", "id": "15461586", "url": "https://pubmed.ncbi.nlm.nih.gov/15461586" } ], "uniprot_canonical_ac": "Q86Y38-1" }, { "start_pos": 542, "end_pos": 542, "sequence_org": "C", "sequence_mut": "A", "comment": "No effect.", "evidence": [ { "database": "UniProtKB", "id": "Q86Y38", "url": "https://www.uniprot.org/uniprotkb/Q86Y38" }, { "database": "PubMed", "id": "15461586", "url": "https://pubmed.ncbi.nlm.nih.gov/15461586" } ], "uniprot_canonical_ac": "Q86Y38-1" }, { "start_pos": 561, "end_pos": 561, "sequence_org": "C", "sequence_mut": "A", "comment": "Strongly reduced enzyme activity.", "evidence": [ { "database": "UniProtKB", "id": "Q86Y38", "url": "https://www.uniprot.org/uniprotkb/Q86Y38" }, { "database": "PubMed", "id": "15461586", "url": "https://pubmed.ncbi.nlm.nih.gov/15461586" } ], "uniprot_canonical_ac": "Q86Y38-1" }, { "start_pos": 563, "end_pos": 563, "sequence_org": "C", "sequence_mut": "A", "comment": "No effect.", "evidence": [ { "database": "UniProtKB", "id": "Q86Y38", "url": "https://www.uniprot.org/uniprotkb/Q86Y38" }, { "database": "PubMed", "id": "15461586", "url": "https://pubmed.ncbi.nlm.nih.gov/15461586" } ], "uniprot_canonical_ac": "Q86Y38-1" }, { "start_pos": 572, "end_pos": 572, "sequence_org": "C", "sequence_mut": "A", "comment": "Strongly reduced enzyme activity.", "evidence": [ { "database": "UniProtKB", "id": "Q86Y38", "url": "https://www.uniprot.org/uniprotkb/Q86Y38" }, { "database": "PubMed", "id": "15461586", "url": "https://pubmed.ncbi.nlm.nih.gov/15461586" } ], "uniprot_canonical_ac": "Q86Y38-1" }, { "start_pos": 574, "end_pos": 574, "sequence_org": "C", "sequence_mut": "A", "comment": "Strongly reduced enzyme activity.", "evidence": [ { "database": "UniProtKB", "id": "Q86Y38", "url": "https://www.uniprot.org/uniprotkb/Q86Y38" }, { "database": "PubMed", "id": "15461586", "url": "https://pubmed.ncbi.nlm.nih.gov/15461586" } ], "uniprot_canonical_ac": "Q86Y38-1" }, { "start_pos": 675, "end_pos": 675, "sequence_org": "C", "sequence_mut": "A", "comment": "No effect.", "evidence": [ { "database": "UniProtKB", "id": "Q86Y38", "url": "https://www.uniprot.org/uniprotkb/Q86Y38" }, { "database": "PubMed", "id": "15461586", "url": "https://pubmed.ncbi.nlm.nih.gov/15461586" } ], "uniprot_canonical_ac": "Q86Y38-1" }, { "start_pos": 920, "end_pos": 920, "sequence_org": "C", "sequence_mut": "A", "comment": "No effect.", "evidence": [ { "database": "UniProtKB", "id": "Q86Y38", "url": "https://www.uniprot.org/uniprotkb/Q86Y38" }, { "database": "PubMed", "id": "15461586", "url": "https://pubmed.ncbi.nlm.nih.gov/15461586" } ], "uniprot_canonical_ac": "Q86Y38-1" }, { "start_pos": 927, "end_pos": 927, "sequence_org": "C", "sequence_mut": "A", "comment": "No effect.", "evidence": [ { "database": "UniProtKB", "id": "Q86Y38", "url": "https://www.uniprot.org/uniprotkb/Q86Y38" }, { "database": "PubMed", "id": "15461586", "url": "https://pubmed.ncbi.nlm.nih.gov/15461586" } ], "uniprot_canonical_ac": "Q86Y38-1" }, { "start_pos": 933, "end_pos": 933, "sequence_org": "C", "sequence_mut": "A", "comment": "No effect.", "evidence": [ { "database": "UniProtKB", "id": "Q86Y38", "url": "https://www.uniprot.org/uniprotkb/Q86Y38" }, { "database": "PubMed", "id": "15461586", "url": "https://pubmed.ncbi.nlm.nih.gov/15461586" } ], "uniprot_canonical_ac": "Q86Y38-1" } ], "record_id": "pubmed.15461586", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 30 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Efficient assembly and release of SARS coronavirus-like particles by a heterologous expression system.", "journal": "FEBS letters", "date": "2004", "authors": "Mortola E, Roy P", "reference": { "type": "PubMed", "id": "15474033", "url": "https://pubmed.ncbi.nlm.nih.gov/15474033" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P98160-1", "protein_name": "Basement membrane-specific heparan sulfate proteoglycan core protein", "gene_name": "HSPG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75056-1", "protein_name": "Syndecan-3", "gene_name": "SDC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00468-1", "protein_name": "Agrin", "gene_name": "AGRN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09958-1", "protein_name": "Furin", "gene_name": "FURIN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51654-1", "protein_name": "Glypican-3", "gene_name": "GPC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18827-1", "protein_name": "Syndecan-1", "gene_name": "SDC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07711-1", "protein_name": "Procathepsin L", "gene_name": "CTSL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31431-1", "protein_name": "Syndecan-4", "gene_name": "SDC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y625-1", "protein_name": "Glypican-6", "gene_name": "GPC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N158-1", "protein_name": "Glypican-2", "gene_name": "GPC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BYF1-1", "protein_name": "Angiotensin-converting enzyme 2", "gene_name": "ACE2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55072-1", "protein_name": "Transitional endoplasmic reticulum ATPase", "gene_name": "VCP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P34741-1", "protein_name": "Syndecan-2", "gene_name": "SDC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14786-1", "protein_name": "Neuropilin-1", "gene_name": "NRP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78333-1", "protein_name": "Glypican-5", "gene_name": "GPC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35052-1", "protein_name": "Glypican-1", "gene_name": "GPC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96D42-1", "protein_name": "Hepatitis A virus cellular receptor 1", "gene_name": "HAVCR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15393-1", "protein_name": "Transmembrane protease serine 2", "gene_name": "TMPRSS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75487-1", "protein_name": "Glypican-4", "gene_name": "GPC4", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P98160", "url": "https://www.uniprot.org/uniprotkb/P98160" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.15474033", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 19 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Serotype-specific entry of dengue virus into liver cells: identification of the 37-kilodalton/67-kilodalton high-affinity laminin receptor as a dengue virus serotype 1 receptor.", "journal": "Journal of virology", "date": "2004-11", "authors": "Thepparit Chutima, Smith Duncan R", "reference": { "type": "PubMed", "id": "15507651", "url": "https://pubmed.ncbi.nlm.nih.gov/15507651" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P98160-1", "protein_name": "Basement membrane-specific heparan sulfate proteoglycan core protein", "gene_name": "HSPG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75056-1", "protein_name": "Syndecan-3", "gene_name": "SDC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00468-1", "protein_name": "Agrin", "gene_name": "AGRN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11021-1", "protein_name": "Endoplasmic reticulum chaperone BiP", "gene_name": "HSPA5", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95782-1", "protein_name": "AP-2 complex subunit alpha-1", "gene_name": "AP2A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95832-1", "protein_name": "Claudin-1", "gene_name": "CLDN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NNX6-1", "protein_name": "CD209 antigen", "gene_name": "CD209", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TBC4-1", "protein_name": "NEDD8-activating enzyme E1 catalytic subunit", "gene_name": "UBA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UGN4-1", "protein_name": "CMRF35-like molecule 8", "gene_name": "CD300A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22314-1", "protein_name": "Ubiquitin-like modifier-activating enzyme 1", "gene_name": "UBA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14393-2", "protein_name": "Growth arrest-specific protein 6", "gene_name": "GAS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09958-1", "protein_name": "Furin", "gene_name": "FURIN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51654-1", "protein_name": "Glypican-3", "gene_name": "GPC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "A0AVT1-1", "protein_name": "Ubiquitin-like modifier-activating enzyme 6", "gene_name": "UBA6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08865-1", "protein_name": "Small ribosomal subunit protein uS2", "gene_name": "RPSA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P5S7-1", "protein_name": "Ribonuclease kappa", "gene_name": "RNASEK", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18827-1", "protein_name": "Syndecan-1", "gene_name": "SDC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30530-1", "protein_name": "Tyrosine-protein kinase receptor UFO", "gene_name": "AXL", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95352-1", "protein_name": "Ubiquitin-like modifier-activating enzyme ATG7", "gene_name": "ATG7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20138-1", "protein_name": "Myeloid cell surface antigen CD33", "gene_name": "CD33", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q06418-1", "protein_name": "Tyrosine-protein kinase receptor TYRO3", "gene_name": "TYRO3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31431-1", "protein_name": "Syndecan-4", "gene_name": "SDC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16553-1", "protein_name": "Lymphocyte antigen 6E", "gene_name": "LY6E", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y625-1", "protein_name": "Glypican-6", "gene_name": "GPC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9GZZ9-1", "protein_name": "Ubiquitin-like modifier-activating enzyme 5", "gene_name": "UBA5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N158-1", "protein_name": "Glypican-2", "gene_name": "GPC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41226-1", "protein_name": "Ubiquitin-like modifier-activating enzyme 7", "gene_name": "UBA7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63010-1", "protein_name": "AP-2 complex subunit beta", "gene_name": "AP2B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96CW1-1", "protein_name": "AP-2 complex subunit mu", "gene_name": "AP2M1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPY8-1", "protein_name": "Microtubule-associated protein RP/EB family member 3", "gene_name": "MAPRE3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P34741-1", "protein_name": "Syndecan-2", "gene_name": "SDC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78333-1", "protein_name": "Glypican-5", "gene_name": "GPC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35052-1", "protein_name": "Glypican-1", "gene_name": "GPC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5J8M3-1", "protein_name": "ER membrane protein complex subunit 4", "gene_name": "EMC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22897-1", "protein_name": "Macrophage mannose receptor 1", "gene_name": "MRC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07225-1", "protein_name": "Vitamin K-dependent protein S", "gene_name": "PROS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96D42-1", "protein_name": "Hepatitis A virus cellular receptor 1", "gene_name": "HAVCR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96H15-1", "protein_name": "T-cell immunoglobulin and mucin domain-containing protein 4", "gene_name": "TIMD4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08571-1", "protein_name": "Monocyte differentiation antigen CD14", "gene_name": "CD14", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75487-1", "protein_name": "Glypican-4", "gene_name": "GPC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12866-1", "protein_name": "Tyrosine-protein kinase Mer", "gene_name": "MERTK", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53680-1", "protein_name": "AP-2 complex subunit sigma", "gene_name": "AP2S1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27986-1", "protein_name": "Phosphatidylinositol 3-kinase regulatory subunit alpha", "gene_name": "PIK3R1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94973-1", "protein_name": "AP-2 complex subunit alpha-2", "gene_name": "AP2A2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P98160", "url": "https://www.uniprot.org/uniprotkb/P98160" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.15507651", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 44 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Two-step mechanism of binding of apolipoprotein E to heparin: implications for the kinetics of apolipoprotein E-heparan sulfate proteoglycan complex formation on cell surfaces.", "journal": "The Journal of biological chemistry", "date": "2005", "authors": "Futamura M, Dhanasekaran P, Handa T, Phillips MC, Lund-Katz S, Saito H", "reference": { "type": "PubMed", "id": "15583000", "url": "https://pubmed.ncbi.nlm.nih.gov/15583000" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P98160-1", "protein_name": "Basement membrane-specific heparan sulfate proteoglycan core protein", "gene_name": "HSPG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02753-1", "protein_name": "Retinol-binding protein 4", "gene_name": "RBP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75056-1", "protein_name": "Syndecan-3", "gene_name": "SDC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00468-1", "protein_name": "Agrin", "gene_name": "AGRN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17516-1", "protein_name": "Aldo-keto reductase family 1 member C4", "gene_name": "AKR1C4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04114-1", "protein_name": "Apolipoprotein B-100", "gene_name": "APOB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07954-1", "protein_name": "Prolow-density lipoprotein receptor-related protein 1", "gene_name": "LRP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95445-1", "protein_name": "Apolipoprotein M", "gene_name": "APOM", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q04828-1", "protein_name": "Aldo-keto reductase family 1 member C1", "gene_name": "AKR1C1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02655-1", "protein_name": "Apolipoprotein C-II", "gene_name": "APOC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42330-1", "protein_name": "Aldo-keto reductase family 1 member C3", "gene_name": "AKR1C3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04118-1", "protein_name": "Colipase", "gene_name": "CLPS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51654-1", "protein_name": "Glypican-3", "gene_name": "GPC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95237-1", "protein_name": "Lecithin retinol acyltransferase", "gene_name": "LRAT", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09455-1", "protein_name": "Retinol-binding protein 1", "gene_name": "RBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TC12-1", "protein_name": "Retinol dehydrogenase 11", "gene_name": "RDH11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50120-1", "protein_name": "Retinol-binding protein 2", "gene_name": "RBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6NUM9-1", "protein_name": "All-trans-retinol 13,14-reductase", "gene_name": "RETSAT", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18827-1", "protein_name": "Syndecan-1", "gene_name": "SDC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02656-1", "protein_name": "Apolipoprotein C-III", "gene_name": "APOC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02649-1", "protein_name": "Apolipoprotein E", "gene_name": "APOE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HAY6-1", "protein_name": "Beta,beta-carotene 15,15'-dioxygenase", "gene_name": "BCO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02766-1", "protein_name": "Transthyretin", "gene_name": "TTR", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31431-1", "protein_name": "Syndecan-4", "gene_name": "SDC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16233-1", "protein_name": "Pancreatic triacylglycerol lipase", "gene_name": "PNLIP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y625-1", "protein_name": "Glypican-6", "gene_name": "GPC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N158-1", "protein_name": "Glypican-2", "gene_name": "GPC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y561-1", "protein_name": "Low-density lipoprotein receptor-related protein 12", "gene_name": "LRP12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P98164-1", "protein_name": "Low-density lipoprotein receptor-related protein 2", "gene_name": "LRP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02652-1", "protein_name": "Apolipoprotein A-II", "gene_name": "APOA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14114-1", "protein_name": "Low-density lipoprotein receptor-related protein 8", "gene_name": "LRP8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06727-1", "protein_name": "Apolipoprotein A-IV", "gene_name": "APOA4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01130-1", "protein_name": "Low-density lipoprotein receptor", "gene_name": "LDLR", "tax_name": "Human" }, { "uniprot_canonical_ac": "P34741-1", "protein_name": "Syndecan-2", "gene_name": "SDC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78333-1", "protein_name": "Glypican-5", "gene_name": "GPC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35052-1", "protein_name": "Glypican-1", "gene_name": "GPC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P1J6-1", "protein_name": "Phospholipase B1, membrane-associated", "gene_name": "PLB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BYV7-1", "protein_name": "Carotenoid-cleaving dioxygenase, mitochondrial", "gene_name": "BCO2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75487-1", "protein_name": "Glypican-4", "gene_name": "GPC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IV16-1", "protein_name": "Glycosylphosphatidylinositol-anchored high density lipoprotein-binding protein 1", "gene_name": "GPIHBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06858-1", "protein_name": "Lipoprotein lipase", "gene_name": "LPL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z4F1-1", "protein_name": "Low-density lipoprotein receptor-related protein 10", "gene_name": "LRP10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02647-1", "protein_name": "Apolipoprotein A-I", "gene_name": "APOA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60218-1", "protein_name": "Aldo-keto reductase family 1 member B10", "gene_name": "AKR1B10", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P98160", "url": "https://www.uniprot.org/uniprotkb/P98160" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.15583000", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 44 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "BMP-1/Tolloid-like metalloproteases process endorepellin, the angiostatic C-terminal fragment of perlecan.", "journal": "The Journal of biological chemistry", "date": "2005", "authors": "Gonzalez EM, Reed CC, Bix G, Fu J, Zhang Y, Gopalakrishnan B, Greenspan DS, Iozzo RV", "reference": { "type": "PubMed", "id": "15591058", "url": "https://pubmed.ncbi.nlm.nih.gov/15591058" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P98160-1", "protein_name": "Basement membrane-specific heparan sulfate proteoglycan core protein", "gene_name": "HSPG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15502-3", "protein_name": "Elastin", "gene_name": "ELN", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43897-1", "protein_name": "Tolloid-like protein 1", "gene_name": "TLL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13444-1", "protein_name": "Disintegrin and metalloproteinase domain-containing protein 15", "gene_name": "ADAM15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92542-1", "protein_name": "Nicastrin", "gene_name": "NCSTN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02751-15", "protein_name": "Fibronectin", "gene_name": "FN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04632-1", "protein_name": "Calpain small subunit 1", "gene_name": "CAPNS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08246-1", "protein_name": "Neutrophil elastase", "gene_name": "ELANE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92743-1", "protein_name": "Serine protease HTRA1", "gene_name": "HTRA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBM4-1", "protein_name": "Opticin", "gene_name": "OPTC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16112-1", "protein_name": "Aggrecan core protein", "gene_name": "ACAN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P03956-1", "protein_name": "Interstitial collagenase", "gene_name": "MMP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39900-1", "protein_name": "Macrophage metalloelastase", "gene_name": "MMP12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14543-1", "protein_name": "Nidogen-1", "gene_name": "NID1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWY4-1", "protein_name": "Signal peptide, CUB and EGF-like domain-containing protein 1", "gene_name": "SCUBE1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35613-1", "protein_name": "Basigin", "gene_name": "BSG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50281-1", "protein_name": "Matrix metalloproteinase-14", "gene_name": "MMP14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TE57-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 16", "gene_name": "ADAMTS16", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNA0-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 5", "gene_name": "ADAMTS5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6MZZ7-1", "protein_name": "Calpain-13", "gene_name": "CAPN13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07711-1", "protein_name": "Procathepsin L", "gene_name": "CTSL", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75808-1", "protein_name": "Calpain-15", "gene_name": "CAPN15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16070-1", "protein_name": "CD44 antigen", "gene_name": "CD44", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08311-1", "protein_name": "Cathepsin G", "gene_name": "CTSG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10451-1", "protein_name": "Osteopontin", "gene_name": "SPP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25774-1", "protein_name": "Cathepsin S", "gene_name": "CTSS", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15484-1", "protein_name": "Calpain-5", "gene_name": "CAPN5", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60911-1", "protein_name": "Cathepsin L2", "gene_name": "CTSV", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07942-1", "protein_name": "Laminin subunit beta-1", "gene_name": "LAMB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49862-1", "protein_name": "Kallikrein-7", "gene_name": "KLK7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13753-1", "protein_name": "Laminin subunit gamma-2", "gene_name": "LAMC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11047-1", "protein_name": "Laminin subunit gamma-1", "gene_name": "LAMC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P45452-1", "protein_name": "Collagenase 3", "gene_name": "MMP13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24347-1", "protein_name": "Stromelysin-3", "gene_name": "MMP11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09238-1", "protein_name": "Stromelysin-2", "gene_name": "MMP10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51511-1", "protein_name": "Matrix metalloproteinase-15", "gene_name": "MMP15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96L46-1", "protein_name": "Calpain small subunit 2", "gene_name": "CAPNS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13751-1", "protein_name": "Laminin subunit beta-3", "gene_name": "LAMB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16787-2", "protein_name": "Laminin subunit alpha-3", "gene_name": "LAMA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15230-1", "protein_name": "Laminin subunit alpha-5", "gene_name": "LAMA5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09237-1", "protein_name": "Matrilysin", "gene_name": "MMP7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6L7-1", "protein_name": "Tolloid-like protein 2", "gene_name": "TLL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42574-1", "protein_name": "Caspase-3", "gene_name": "CASP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00747-1", "protein_name": "Plasminogen", "gene_name": "PLG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14780-1", "protein_name": "Matrix metalloproteinase-9", "gene_name": "MMP9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07585-1", "protein_name": "Decorin", "gene_name": "DCN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6W3-1", "protein_name": "Calpain-7", "gene_name": "CAPN7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13497-1", "protein_name": "Bone morphogenetic protein 1", "gene_name": "BMP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "A6NHC0-1", "protein_name": "Calpain-8", "gene_name": "CAPN8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14815-1", "protein_name": "Calpain-9", "gene_name": "CAPN9", "tax_name": "Human" }, { "uniprot_canonical_ac": "A8MX76-1", "protein_name": "Calpain-14", "gene_name": "CAPN14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12830-1", "protein_name": "Cadherin-1", "gene_name": "CDH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZSI9-1", "protein_name": "Calpain-12", "gene_name": "CAPN12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17655-1", "protein_name": "Calpain-2 catalytic subunit", "gene_name": "CAPN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6Q1-1", "protein_name": "Calpain-6", "gene_name": "CAPN6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08253-1", "protein_name": "72 kDa type IV collagenase", "gene_name": "MMP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IX30-1", "protein_name": "Signal peptide, CUB and EGF-like domain-containing protein 3", "gene_name": "SCUBE3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96GW7-1", "protein_name": "Brevican core protein", "gene_name": "BCAN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TE60-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 18", "gene_name": "ADAMTS18", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75173-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 4", "gene_name": "ADAMTS4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P2N4-3", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 9", "gene_name": "ADAMTS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHI8-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 1", "gene_name": "ADAMTS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UP79-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 8", "gene_name": "ADAMTS8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20807-1", "protein_name": "Calpain-3", "gene_name": "CAPN3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07384-1", "protein_name": "Calpain-1 catalytic subunit", "gene_name": "CAPN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HC96-1", "protein_name": "Calpain-10", "gene_name": "CAPN10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P43235-1", "protein_name": "Cathepsin K", "gene_name": "CTSK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UMQ6-1", "protein_name": "Calpain-11", "gene_name": "CAPN11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35555-1", "protein_name": "Fibrillin-1", "gene_name": "FBN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35556-1", "protein_name": "Fibrillin-2", "gene_name": "FBN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q75N90-1", "protein_name": "Fibrillin-3", "gene_name": "FBN3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20810-1", "protein_name": "Calpastatin", "gene_name": "CAST", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08254-1", "protein_name": "Stromelysin-1", "gene_name": "MMP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22894-1", "protein_name": "Neutrophil collagenase", "gene_name": "MMP8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99542-1", "protein_name": "Matrix metalloproteinase-19", "gene_name": "MMP19", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60882-1", "protein_name": "Matrix metalloproteinase-20", "gene_name": "MMP20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05793-1", "protein_name": "Basement membrane-specific heparan sulfate proteoglycan core protein", "gene_name": "Hspg2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8IU80-4", "protein_name": "Transmembrane protease serine 6", "gene_name": "TMPRSS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49768-1", "protein_name": "Presenilin-1", "gene_name": "PSEN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14672-1", "protein_name": "Disintegrin and metalloproteinase domain-containing protein 10", "gene_name": "ADAM10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01023-1", "protein_name": "Alpha-2-macroglobulin", "gene_name": "A2M", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78325-1", "protein_name": "Disintegrin and metalloproteinase domain-containing protein 8", "gene_name": "ADAM8", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P98160", "url": "https://www.uniprot.org/uniprotkb/P98160" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 4197, "end_pos": 4197, "sequence_org": "D", "sequence_mut": "I", "comment": "Abolishes BMP1-mediated cleavage of endorepellin.", "evidence": [ { "database": "UniProtKB", "id": "P98160", "url": "https://www.uniprot.org/uniprotkb/P98160" }, { "database": "PubMed", "id": "15591058", "url": "https://pubmed.ncbi.nlm.nih.gov/15591058" } ], "uniprot_canonical_ac": "P98160-1" }, { "start_pos": 4258, "end_pos": 4258, "sequence_org": "D", "sequence_mut": "A", "comment": "Retains proper folding. Reduced calcium ion binding.", "evidence": [ { "database": "UniProtKB", "id": "P98160", "url": "https://www.uniprot.org/uniprotkb/P98160" }, { "database": "PubMed", "id": "15591058", "url": "https://pubmed.ncbi.nlm.nih.gov/15591058" } ], "uniprot_canonical_ac": "P98160-1" }, { "start_pos": 4327, "end_pos": 4327, "sequence_org": "N", "sequence_mut": "A", "comment": "Retains proper folding. Reduced calcium ion binding.", "evidence": [ { "database": "UniProtKB", "id": "P98160", "url": "https://www.uniprot.org/uniprotkb/P98160" }, { "database": "PubMed", "id": "15591058", "url": "https://pubmed.ncbi.nlm.nih.gov/15591058" } ], "uniprot_canonical_ac": "P98160-1" }, { "start_pos": 4197, "end_pos": 4197, "sequence_org": "D", "sequence_mut": "I", "comment": "Abolishes BMP1-mediated cleavage of endorepellin.", "evidence": [ { "database": "UniProtKB", "id": "P98160", "url": "https://www.uniprot.org/uniprotkb/P98160" }, { "database": "PubMed", "id": "15591058", "url": "https://pubmed.ncbi.nlm.nih.gov/15591058" } ], "uniprot_canonical_ac": "P98160-1" }, { "start_pos": 4258, "end_pos": 4258, "sequence_org": "D", "sequence_mut": "A", "comment": "Retains proper folding. Reduced calcium ion binding.", "evidence": [ { "database": "UniProtKB", "id": "P98160", "url": "https://www.uniprot.org/uniprotkb/P98160" }, { "database": "PubMed", "id": "15591058", "url": "https://pubmed.ncbi.nlm.nih.gov/15591058" } ], "uniprot_canonical_ac": "P98160-1" }, { "start_pos": 4327, "end_pos": 4327, "sequence_org": "N", "sequence_mut": "A", "comment": "Retains proper folding. Reduced calcium ion binding.", "evidence": [ { "database": "UniProtKB", "id": "P98160", "url": "https://www.uniprot.org/uniprotkb/P98160" }, { "database": "PubMed", "id": "15591058", "url": "https://pubmed.ncbi.nlm.nih.gov/15591058" } ], "uniprot_canonical_ac": "P98160-1" } ], "record_id": "pubmed.15591058", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 82 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Identification and characterization of human Golgi nucleotide sugar transporter SLC35D2, a novel member of the SLC35 nucleotide sugar transporter family.", "journal": "Genomics", "date": "2005", "authors": "Ishida N, Kuba T, Aoki K, Miyatake S, Kawakita M, Sanai Y", "reference": { "type": "PubMed", "id": "15607426", "url": "https://pubmed.ncbi.nlm.nih.gov/15607426" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P98160-1", "protein_name": "Basement membrane-specific heparan sulfate proteoglycan core protein", "gene_name": "HSPG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78381-1", "protein_name": "UDP-galactose translocator", "gene_name": "SLC35A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2D2-1", "protein_name": "UDP-N-acetylglucosamine transporter", "gene_name": "SLC35A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75056-1", "protein_name": "Syndecan-3", "gene_name": "SDC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78382-1", "protein_name": "CMP-sialic acid transporter", "gene_name": "SLC35A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H1N7-1", "protein_name": "Adenosine 3'-phospho 5'-phosphosulfate transporter 2", "gene_name": "SLC35B3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00468-1", "protein_name": "Agrin", "gene_name": "AGRN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16851-1", "protein_name": "UTP--glucose-1-phosphate uridylyltransferase", "gene_name": "UGP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51654-1", "protein_name": "Glypican-3", "gene_name": "GPC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60243-1", "protein_name": "Heparan-sulfate 6-O-sulfotransferase 1", "gene_name": "HS6ST1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IZT8-1", "protein_name": "Heparan sulfate glucosamine 3-O-sulfotransferase 5", "gene_name": "HS3ST5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y661-1", "protein_name": "Heparan sulfate glucosamine 3-O-sulfotransferase 4", "gene_name": "HS3ST4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y278-1", "protein_name": "Heparan sulfate glucosamine 3-O-sulfotransferase 2", "gene_name": "HS3ST2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q76EJ3-1", "protein_name": "Nucleotide sugar transporter SLC35D2", "gene_name": "SLC35D2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TB61-1", "protein_name": "Adenosine 3'-phospho 5'-phosphosulfate transporter 1", "gene_name": "SLC35B2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18827-1", "protein_name": "Syndecan-1", "gene_name": "SDC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NTN3-1", "protein_name": "Nucleotide sugar transporter SLC35D1", "gene_name": "SLC35D1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31431-1", "protein_name": "Syndecan-4", "gene_name": "SDC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y625-1", "protein_name": "Glypican-6", "gene_name": "GPC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52848-1", "protein_name": "Bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 1", "gene_name": "NDST1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95803-1", "protein_name": "Bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 3", "gene_name": "NDST3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N158-1", "protein_name": "Glypican-2", "gene_name": "GPC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94923-1", "protein_name": "D-glucuronyl C5-epimerase", "gene_name": "GLCE", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43909-1", "protein_name": "Exostosin-like 3", "gene_name": "EXTL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969S0-1", "protein_name": "Nucleotide sugar transporter SLC35B4", "gene_name": "SLC35B4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P34741-1", "protein_name": "Syndecan-2", "gene_name": "SDC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16394-1", "protein_name": "Exostosin-1", "gene_name": "EXT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A29-1", "protein_name": "GDP-fucose transporter 1", "gene_name": "SLC35C1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78333-1", "protein_name": "Glypican-5", "gene_name": "GPC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35052-1", "protein_name": "Glypican-1", "gene_name": "GPC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96MM7-1", "protein_name": "Heparan-sulfate 6-O-sulfotransferase 2", "gene_name": "HS6ST2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBQ6-1", "protein_name": "Exostosin-like 2", "gene_name": "EXTL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14792-1", "protein_name": "Heparan sulfate glucosamine 3-O-sulfotransferase 1", "gene_name": "HS3ST1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y662-1", "protein_name": "Heparan sulfate glucosamine 3-O-sulfotransferase 3B1", "gene_name": "HS3ST3B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52849-1", "protein_name": "Bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 2", "gene_name": "NDST2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H3R1-1", "protein_name": "N-heparan sulfate sulfotransferase 4", "gene_name": "NDST4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60701-1", "protein_name": "UDP-glucose 6-dehydrogenase", "gene_name": "UGDH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NBZ7-1", "protein_name": "UDP-glucuronic acid decarboxylase 1", "gene_name": "UXS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75487-1", "protein_name": "Glypican-4", "gene_name": "GPC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93063-1", "protein_name": "Exostosin-2", "gene_name": "EXT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7LGA3-1", "protein_name": "Heparan sulfate 2-O-sulfotransferase 1", "gene_name": "HS2ST1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IZP7-1", "protein_name": "Heparan-sulfate 6-O-sulfotransferase 3", "gene_name": "HS6ST3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y663-1", "protein_name": "Heparan sulfate glucosamine 3-O-sulfotransferase 3A1", "gene_name": "HS3ST3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96QI5-1", "protein_name": "Heparan sulfate glucosamine 3-O-sulfotransferase 6", "gene_name": "HS3ST6", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P98160", "url": "https://www.uniprot.org/uniprotkb/P98160" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.15607426", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 44 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Lysosomal metabolism of glycoproteins.", "journal": "Glycobiology", "date": "2005", "authors": "Winchester B", "reference": { "type": "PubMed", "id": "15647514", "url": "https://pubmed.ncbi.nlm.nih.gov/15647514" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P98160-1", "protein_name": "Basement membrane-specific heparan sulfate proteoglycan core protein", "gene_name": "HSPG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51884-1", "protein_name": "Lumican", "gene_name": "LUM", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75056-1", "protein_name": "Syndecan-3", "gene_name": "SDC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P54802-1", "protein_name": "Alpha-N-acetylglucosaminidase", "gene_name": "NAGLU", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00468-1", "protein_name": "Agrin", "gene_name": "AGRN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P21810-1", "protein_name": "Biglycan", "gene_name": "BGN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P34059-1", "protein_name": "N-acetylgalactosamine-6-sulfatase", "gene_name": "GALNS", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q06828-1", "protein_name": "Fibromodulin", "gene_name": "FMOD", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15586-1", "protein_name": "N-acetylglucosamine-6-sulfatase", "gene_name": "GNS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51654-1", "protein_name": "Glypican-3", "gene_name": "GPC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22304-1", "protein_name": "Iduronate 2-sulfatase", "gene_name": "IDS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35475-1", "protein_name": "Alpha-L-iduronidase", "gene_name": "IDUA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06865-1", "protein_name": "Beta-hexosaminidase subunit alpha", "gene_name": "HEXA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07686-1", "protein_name": "Beta-hexosaminidase subunit beta", "gene_name": "HEXB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16112-1", "protein_name": "Aggrecan core protein", "gene_name": "ACAN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99983-1", "protein_name": "Osteomodulin", "gene_name": "OMD", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51688-1", "protein_name": "N-sulphoglucosamine sulphohydrolase", "gene_name": "SGSH", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18827-1", "protein_name": "Syndecan-1", "gene_name": "SDC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15848-1", "protein_name": "Arylsulfatase B", "gene_name": "ARSB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16278-1", "protein_name": "Beta-galactosidase", "gene_name": "GLB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07711-1", "protein_name": "Procathepsin L", "gene_name": "CTSL", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43820-1", "protein_name": "Hyaluronidase-3", "gene_name": "HYAL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95196-1", "protein_name": "Chondroitin sulfate proteoglycan 5", "gene_name": "CSPG5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31431-1", "protein_name": "Syndecan-4", "gene_name": "SDC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y625-1", "protein_name": "Glypican-6", "gene_name": "GPC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60938-1", "protein_name": "Keratocan", "gene_name": "KERA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20774-1", "protein_name": "Mimecan", "gene_name": "OGN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N158-1", "protein_name": "Glypican-2", "gene_name": "GPC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IW92-1", "protein_name": "Beta-galactosidase-1-like protein 2", "gene_name": "GLB1L2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P34741-1", "protein_name": "Syndecan-2", "gene_name": "SDC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6UVK1-1", "protein_name": "Chondroitin sulfate proteoglycan 4", "gene_name": "CSPG4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NCI6-1", "protein_name": "Beta-galactosidase-1-like protein 3", "gene_name": "GLB1L3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78333-1", "protein_name": "Glypican-5", "gene_name": "GPC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35052-1", "protein_name": "Glypican-1", "gene_name": "GPC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13611-1", "protein_name": "Versican core protein", "gene_name": "VCAN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08236-1", "protein_name": "Beta-glucuronidase", "gene_name": "GUSB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07585-1", "protein_name": "Decorin", "gene_name": "DCN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96GW7-1", "protein_name": "Brevican core protein", "gene_name": "BCAN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2M3T9-1", "protein_name": "Hyaluronidase-4", "gene_name": "HYAL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12794-1", "protein_name": "Hyaluronidase-1", "gene_name": "HYAL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WWQ2-1", "protein_name": "Inactive heparanase-2", "gene_name": "HPSE2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y251-1", "protein_name": "Heparanase", "gene_name": "HPSE", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51888-1", "protein_name": "Prolargin", "gene_name": "PRELP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6UWU2-1", "protein_name": "Beta-galactosidase-1-like protein", "gene_name": "GLB1L", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75487-1", "protein_name": "Glypican-4", "gene_name": "GPC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q68CP4-1", "protein_name": "Heparan-alpha-glucosaminide N-acetyltransferase", "gene_name": "HGSNAT", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14594-1", "protein_name": "Neurocan core protein", "gene_name": "NCAN", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P98160", "url": "https://www.uniprot.org/uniprotkb/P98160" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.15647514", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 47 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Primary structure of the human heparan sulfate proteoglycan from basement membrane (HSPG2/perlecan). A chimeric molecule with multiple domains homologous to the low density lipoprotein receptor, laminin, neural cell adhesion molecules, and epidermal growth factor.", "journal": "J. Biol. Chem.", "date": "1992", "authors": "Murdoch AD, Dodge GR, Cohen I, Tuan RS, Iozzo RV", "reference": { "type": "PubMed", "id": "1569102", "url": "https://pubmed.ncbi.nlm.nih.gov/1569102" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P98160-1", "protein_name": "Basement membrane-specific heparan sulfate proteoglycan core protein", "gene_name": "HSPG2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P98160", "url": "https://www.uniprot.org/uniprotkb/P98160" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.1569102", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Loss of alpha10beta1 integrin expression leads to moderate dysfunction of growth plate chondrocytes.", "journal": "Journal of cell science", "date": "2005", "authors": "Bengtsson T, Aszodi A, Nicolae C, Hunziker EB, Lundgren-Akerlund E, Fassler R", "reference": { "type": "PubMed", "id": "15713743", "url": "https://pubmed.ncbi.nlm.nih.gov/15713743" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P98160-1", "protein_name": "Basement membrane-specific heparan sulfate proteoglycan core protein", "gene_name": "HSPG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51884-1", "protein_name": "Lumican", "gene_name": "LUM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02452-1", "protein_name": "Collagen alpha-1(I) chain", "gene_name": "COL1A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18084-1", "protein_name": "Integrin beta-5", "gene_name": "ITGB5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02671-1", "protein_name": "Fibrinogen alpha chain", "gene_name": "FGA", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00468-1", "protein_name": "Agrin", "gene_name": "AGRN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02751-15", "protein_name": "Fibronectin", "gene_name": "FN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08722-1", "protein_name": "Leukocyte surface antigen CD47", "gene_name": "CD47", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53420-1", "protein_name": "Collagen alpha-4(IV) chain", "gene_name": "COL4A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02679-1", "protein_name": "Fibrinogen gamma chain", "gene_name": "FGG", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86Y22-1", "protein_name": "Collagen alpha-1(XXIII) chain", "gene_name": "COL23A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20701-1", "protein_name": "Integrin alpha-L", "gene_name": "ITGAL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05362-1", "protein_name": "Intercellular adhesion molecule 1", "gene_name": "ICAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y624-1", "protein_name": "Junctional adhesion molecule A", "gene_name": "F11R", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35613-1", "protein_name": "Basigin", "gene_name": "BSG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P21815-1", "protein_name": "Integrin-binding sialoprotein", "gene_name": "IBSP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49747-1", "protein_name": "Cartilage oligomeric matrix protein", "gene_name": "COMP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04275-1", "protein_name": "von Willebrand factor", "gene_name": "VWF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07996-1", "protein_name": "Thrombospondin-1", "gene_name": "THBS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16070-1", "protein_name": "CD44 antigen", "gene_name": "CD44", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10451-1", "protein_name": "Osteopontin", "gene_name": "SPP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12110-1", "protein_name": "Collagen alpha-2(VI) chain", "gene_name": "COL6A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14031-1", "protein_name": "Collagen alpha-6(IV) chain", "gene_name": "COL4A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20908-1", "protein_name": "Collagen alpha-1(V) chain", "gene_name": "COL5A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02462-1", "protein_name": "Collagen alpha-1(IV) chain", "gene_name": "COL4A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27658-1", "protein_name": "Collagen alpha-1(VIII) chain", "gene_name": "COL8A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08572-1", "protein_name": "Collagen alpha-2(IV) chain", "gene_name": "COL4A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25067-1", "protein_name": "Collagen alpha-2(VIII) chain", "gene_name": "COL8A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20849-1", "protein_name": "Collagen alpha-1(IX) chain", "gene_name": "COL9A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25940-1", "protein_name": "Collagen alpha-3(V) chain", "gene_name": "COL5A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01955-1", "protein_name": "Collagen alpha-3(IV) chain", "gene_name": "COL4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16284-1", "protein_name": "Platelet endothelial cell adhesion molecule", "gene_name": "PECAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35968-1", "protein_name": "Vascular endothelial growth factor receptor 2", "gene_name": "KDR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13683-1", "protein_name": "Integrin alpha-7", "gene_name": "ITGA7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18564-1", "protein_name": "Integrin beta-6", "gene_name": "ITGB6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11215-1", "protein_name": "Integrin alpha-M", "gene_name": "ITGAM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26006-2", "protein_name": "Integrin alpha-3", "gene_name": "ITGA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08514-1", "protein_name": "Integrin alpha-IIb", "gene_name": "ITGA2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38570-1", "protein_name": "Integrin alpha-E", "gene_name": "ITGAE", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75578-1", "protein_name": "Integrin alpha-10", "gene_name": "ITGA10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06756-1", "protein_name": "Integrin alpha-V", "gene_name": "ITGAV", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53708-1", "protein_name": "Integrin alpha-8", "gene_name": "ITGA8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13349-1", "protein_name": "Integrin alpha-D", "gene_name": "ITGAD", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKX5-1", "protein_name": "Integrin alpha-11", "gene_name": "ITGA11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08648-1", "protein_name": "Integrin alpha-5", "gene_name": "ITGA5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13612-1", "protein_name": "Integrin alpha-4", "gene_name": "ITGA4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05556-1", "protein_name": "Integrin beta-1", "gene_name": "ITGB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02461-1", "protein_name": "Collagen alpha-1(III) chain", "gene_name": "COL3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07092-1", "protein_name": "Collagen alpha-1(XVI) chain", "gene_name": "COL16A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29400-1", "protein_name": "Collagen alpha-5(IV) chain", "gene_name": "COL4A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14055-1", "protein_name": "Collagen alpha-2(IX) chain", "gene_name": "COL9A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "A8TX70-1", "protein_name": "Collagen alpha-5(VI) chain", "gene_name": "COL6A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05997-1", "protein_name": "Collagen alpha-2(V) chain", "gene_name": "COL5A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "A6NMZ7-1", "protein_name": "Collagen alpha-6(VI) chain", "gene_name": "COL6A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12111-1", "protein_name": "Collagen alpha-3(VI) chain", "gene_name": "COL6A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5TAT6-1", "protein_name": "Collagen alpha-1(XIII) chain", "gene_name": "COL13A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08123-1", "protein_name": "Collagen alpha-2(I) chain", "gene_name": "COL1A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12109-1", "protein_name": "Collagen alpha-1(VI) chain", "gene_name": "COL6A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02458-2", "protein_name": "Collagen alpha-1(II) chain", "gene_name": "COL2A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02388-1", "protein_name": "Collagen alpha-1(VII) chain", "gene_name": "COL7A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14050-1", "protein_name": "Collagen alpha-3(IX) chain", "gene_name": "COL9A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02675-1", "protein_name": "Fibrinogen beta chain", "gene_name": "FGB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26010-1", "protein_name": "Integrin beta-7", "gene_name": "ITGB7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05106-1", "protein_name": "Integrin beta-3", "gene_name": "ITGB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q03692-1", "protein_name": "Collagen alpha-1(X) chain", "gene_name": "COL10A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12830-1", "protein_name": "Cadherin-1", "gene_name": "CDH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04004-1", "protein_name": "Vitronectin", "gene_name": "VTN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23229-1", "protein_name": "Integrin alpha-6", "gene_name": "ITGA6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14773-1", "protein_name": "Intercellular adhesion molecule 4", "gene_name": "ICAM4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13797-1", "protein_name": "Integrin alpha-9", "gene_name": "ITGA9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32942-1", "protein_name": "Intercellular adhesion molecule 3", "gene_name": "ICAM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UMF0-1", "protein_name": "Intercellular adhesion molecule 5", "gene_name": "ICAM5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20702-1", "protein_name": "Integrin alpha-X", "gene_name": "ITGAX", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BX67-1", "protein_name": "Junctional adhesion molecule C", "gene_name": "JAM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17301-1", "protein_name": "Integrin alpha-2", "gene_name": "ITGA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57087-1", "protein_name": "Junctional adhesion molecule B", "gene_name": "JAM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26012-1", "protein_name": "Integrin beta-8", "gene_name": "ITGB8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P56199-1", "protein_name": "Integrin alpha-1", "gene_name": "ITGA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19320-1", "protein_name": "Vascular cell adhesion protein 1", "gene_name": "VCAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35555-1", "protein_name": "Fibrillin-1", "gene_name": "FBN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13598-1", "protein_name": "Intercellular adhesion molecule 2", "gene_name": "ICAM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24821-1", "protein_name": "Tenascin", "gene_name": "TNC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39060-3", "protein_name": "Collagen alpha-1(XVIII) chain", "gene_name": "COL18A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05107-1", "protein_name": "Integrin beta-2", "gene_name": "ITGB2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P98160", "url": "https://www.uniprot.org/uniprotkb/P98160" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.15713743", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 84 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A variant in the CD209 promoter is associated with severity of dengue disease.", "journal": "Nature genetics", "date": "2005-05", "authors": "Sakuntabhai Anavaj, Turbpaiboon Chairat, Casad\u00e9mont Isabelle, Chuansumrit Ampaiwan, Lowhnoo Tassanee, Kajaste-Rudnitski Anna, Kalayanarooj Sita Mint, Tangnararatchakit Kanchana, Tangthawornchaikul Nattaya, Vasanawathana Sirijit, Chaiyaratana Wathanee, Yenchitsomanus Pa-Thai, Suriyaphol Prapat, Avirutnan Panisadee, Chokephaibulkit Kulkanya, Matsuda Fumihiko, Yoksan Sutee, Jacob Yves, Lathrop G Mark, Malasit Prida, Despr\u00e8s Philippe, Julier C\u00e9cile", "reference": { "type": "PubMed", "id": "15838506", "url": "https://pubmed.ncbi.nlm.nih.gov/15838506" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P98160-1", "protein_name": "Basement membrane-specific heparan sulfate proteoglycan core protein", "gene_name": "HSPG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75056-1", "protein_name": "Syndecan-3", "gene_name": "SDC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00468-1", "protein_name": "Agrin", "gene_name": "AGRN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11021-1", "protein_name": "Endoplasmic reticulum chaperone BiP", "gene_name": "HSPA5", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95782-1", "protein_name": "AP-2 complex subunit alpha-1", "gene_name": "AP2A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95832-1", "protein_name": "Claudin-1", "gene_name": "CLDN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NNX6-1", "protein_name": "CD209 antigen", "gene_name": "CD209", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TBC4-1", "protein_name": "NEDD8-activating enzyme E1 catalytic subunit", "gene_name": "UBA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UGN4-1", "protein_name": "CMRF35-like molecule 8", "gene_name": "CD300A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22314-1", "protein_name": "Ubiquitin-like modifier-activating enzyme 1", "gene_name": "UBA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14393-2", "protein_name": "Growth arrest-specific protein 6", "gene_name": "GAS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09958-1", "protein_name": "Furin", "gene_name": "FURIN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51654-1", "protein_name": "Glypican-3", "gene_name": "GPC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "A0AVT1-1", "protein_name": "Ubiquitin-like modifier-activating enzyme 6", "gene_name": "UBA6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08865-1", "protein_name": "Small ribosomal subunit protein uS2", "gene_name": "RPSA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P5S7-1", "protein_name": "Ribonuclease kappa", "gene_name": "RNASEK", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18827-1", "protein_name": "Syndecan-1", "gene_name": "SDC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30530-1", "protein_name": "Tyrosine-protein kinase receptor UFO", "gene_name": "AXL", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95352-1", "protein_name": "Ubiquitin-like modifier-activating enzyme ATG7", "gene_name": "ATG7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20138-1", "protein_name": "Myeloid cell surface antigen CD33", "gene_name": "CD33", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q06418-1", "protein_name": "Tyrosine-protein kinase receptor TYRO3", "gene_name": "TYRO3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31431-1", "protein_name": "Syndecan-4", "gene_name": "SDC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16553-1", "protein_name": "Lymphocyte antigen 6E", "gene_name": "LY6E", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y625-1", "protein_name": "Glypican-6", "gene_name": "GPC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9GZZ9-1", "protein_name": "Ubiquitin-like modifier-activating enzyme 5", "gene_name": "UBA5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N158-1", "protein_name": "Glypican-2", "gene_name": "GPC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41226-1", "protein_name": "Ubiquitin-like modifier-activating enzyme 7", "gene_name": "UBA7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63010-1", "protein_name": "AP-2 complex subunit beta", "gene_name": "AP2B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96CW1-1", "protein_name": "AP-2 complex subunit mu", "gene_name": "AP2M1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPY8-1", "protein_name": "Microtubule-associated protein RP/EB family member 3", "gene_name": "MAPRE3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P34741-1", "protein_name": "Syndecan-2", "gene_name": "SDC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78333-1", "protein_name": "Glypican-5", "gene_name": "GPC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35052-1", "protein_name": "Glypican-1", "gene_name": "GPC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5J8M3-1", "protein_name": "ER membrane protein complex subunit 4", "gene_name": "EMC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22897-1", "protein_name": "Macrophage mannose receptor 1", "gene_name": "MRC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07225-1", "protein_name": "Vitamin K-dependent protein S", "gene_name": "PROS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96D42-1", "protein_name": "Hepatitis A virus cellular receptor 1", "gene_name": "HAVCR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96H15-1", "protein_name": "T-cell immunoglobulin and mucin domain-containing protein 4", "gene_name": "TIMD4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08571-1", "protein_name": "Monocyte differentiation antigen CD14", "gene_name": "CD14", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75487-1", "protein_name": "Glypican-4", "gene_name": "GPC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12866-1", "protein_name": "Tyrosine-protein kinase Mer", "gene_name": "MERTK", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53680-1", "protein_name": "AP-2 complex subunit sigma", "gene_name": "AP2S1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27986-1", "protein_name": "Phosphatidylinositol 3-kinase regulatory subunit alpha", "gene_name": "PIK3R1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94973-1", "protein_name": "AP-2 complex subunit alpha-2", "gene_name": "AP2A2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P98160", "url": "https://www.uniprot.org/uniprotkb/P98160" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.15838506", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 44 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "VLA-4-fibronectin interaction is required for the terminal differentiation of human bone marrow cells capable of spontaneous and high rate immunoglobulin secretion.", "journal": "The Journal of experimental medicine", "date": "1992", "authors": "Roldan E, Garcia-Pardo A, Brieva JA", "reference": { "type": "PubMed", "id": "1588291", "url": "https://pubmed.ncbi.nlm.nih.gov/1588291" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P98160-1", "protein_name": "Basement membrane-specific heparan sulfate proteoglycan core protein", "gene_name": "HSPG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51884-1", "protein_name": "Lumican", "gene_name": "LUM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02452-1", "protein_name": "Collagen alpha-1(I) chain", "gene_name": "COL1A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18084-1", "protein_name": "Integrin beta-5", "gene_name": "ITGB5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02671-1", "protein_name": "Fibrinogen alpha chain", "gene_name": "FGA", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00468-1", "protein_name": "Agrin", "gene_name": "AGRN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02751-15", "protein_name": "Fibronectin", "gene_name": "FN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08722-1", "protein_name": "Leukocyte surface antigen CD47", "gene_name": "CD47", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53420-1", "protein_name": "Collagen alpha-4(IV) chain", "gene_name": "COL4A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02679-1", "protein_name": "Fibrinogen gamma chain", "gene_name": "FGG", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86Y22-1", "protein_name": "Collagen alpha-1(XXIII) chain", "gene_name": "COL23A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20701-1", "protein_name": "Integrin alpha-L", "gene_name": "ITGAL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05362-1", "protein_name": "Intercellular adhesion molecule 1", "gene_name": "ICAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y624-1", "protein_name": "Junctional adhesion molecule A", "gene_name": "F11R", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35613-1", "protein_name": "Basigin", "gene_name": "BSG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P21815-1", "protein_name": "Integrin-binding sialoprotein", "gene_name": "IBSP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49747-1", "protein_name": "Cartilage oligomeric matrix protein", "gene_name": "COMP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04275-1", "protein_name": "von Willebrand factor", "gene_name": "VWF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07996-1", "protein_name": "Thrombospondin-1", "gene_name": "THBS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16070-1", "protein_name": "CD44 antigen", "gene_name": "CD44", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10451-1", "protein_name": "Osteopontin", "gene_name": "SPP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12110-1", "protein_name": "Collagen alpha-2(VI) chain", "gene_name": "COL6A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14031-1", "protein_name": "Collagen alpha-6(IV) chain", "gene_name": "COL4A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20908-1", "protein_name": "Collagen alpha-1(V) chain", "gene_name": "COL5A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02462-1", "protein_name": "Collagen alpha-1(IV) chain", "gene_name": "COL4A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27658-1", "protein_name": "Collagen alpha-1(VIII) chain", "gene_name": "COL8A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08572-1", "protein_name": "Collagen alpha-2(IV) chain", "gene_name": "COL4A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25067-1", "protein_name": "Collagen alpha-2(VIII) chain", "gene_name": "COL8A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20849-1", "protein_name": "Collagen alpha-1(IX) chain", "gene_name": "COL9A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25940-1", "protein_name": "Collagen alpha-3(V) chain", "gene_name": "COL5A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01955-1", "protein_name": "Collagen alpha-3(IV) chain", "gene_name": "COL4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16284-1", "protein_name": "Platelet endothelial cell adhesion molecule", "gene_name": "PECAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35968-1", "protein_name": "Vascular endothelial growth factor receptor 2", "gene_name": "KDR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13683-1", "protein_name": "Integrin alpha-7", "gene_name": "ITGA7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18564-1", "protein_name": "Integrin beta-6", "gene_name": "ITGB6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11215-1", "protein_name": "Integrin alpha-M", "gene_name": "ITGAM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26006-2", "protein_name": "Integrin alpha-3", "gene_name": "ITGA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08514-1", "protein_name": "Integrin alpha-IIb", "gene_name": "ITGA2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38570-1", "protein_name": "Integrin alpha-E", "gene_name": "ITGAE", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75578-1", "protein_name": "Integrin alpha-10", "gene_name": "ITGA10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06756-1", "protein_name": "Integrin alpha-V", "gene_name": "ITGAV", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53708-1", "protein_name": "Integrin alpha-8", "gene_name": "ITGA8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13349-1", "protein_name": "Integrin alpha-D", "gene_name": "ITGAD", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKX5-1", "protein_name": "Integrin alpha-11", "gene_name": "ITGA11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08648-1", "protein_name": "Integrin alpha-5", "gene_name": "ITGA5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13612-1", "protein_name": "Integrin alpha-4", "gene_name": "ITGA4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05556-1", "protein_name": "Integrin beta-1", "gene_name": "ITGB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02461-1", "protein_name": "Collagen alpha-1(III) chain", "gene_name": "COL3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07092-1", "protein_name": "Collagen alpha-1(XVI) chain", "gene_name": "COL16A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29400-1", "protein_name": "Collagen alpha-5(IV) chain", "gene_name": "COL4A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14055-1", "protein_name": "Collagen alpha-2(IX) chain", "gene_name": "COL9A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "A8TX70-1", "protein_name": "Collagen alpha-5(VI) chain", "gene_name": "COL6A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05997-1", "protein_name": "Collagen alpha-2(V) chain", "gene_name": "COL5A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "A6NMZ7-1", "protein_name": "Collagen alpha-6(VI) chain", "gene_name": "COL6A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12111-1", "protein_name": "Collagen alpha-3(VI) chain", "gene_name": "COL6A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5TAT6-1", "protein_name": "Collagen alpha-1(XIII) chain", "gene_name": "COL13A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08123-1", "protein_name": "Collagen alpha-2(I) chain", "gene_name": "COL1A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12109-1", "protein_name": "Collagen alpha-1(VI) chain", "gene_name": "COL6A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02458-2", "protein_name": "Collagen alpha-1(II) chain", "gene_name": "COL2A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02388-1", "protein_name": "Collagen alpha-1(VII) chain", "gene_name": "COL7A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14050-1", "protein_name": "Collagen alpha-3(IX) chain", "gene_name": "COL9A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02675-1", "protein_name": "Fibrinogen beta chain", "gene_name": "FGB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26010-1", "protein_name": "Integrin beta-7", "gene_name": "ITGB7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05106-1", "protein_name": "Integrin beta-3", "gene_name": "ITGB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q03692-1", "protein_name": "Collagen alpha-1(X) chain", "gene_name": "COL10A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12830-1", "protein_name": "Cadherin-1", "gene_name": "CDH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04004-1", "protein_name": "Vitronectin", "gene_name": "VTN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23229-1", "protein_name": "Integrin alpha-6", "gene_name": "ITGA6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14773-1", "protein_name": "Intercellular adhesion molecule 4", "gene_name": "ICAM4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13797-1", "protein_name": "Integrin alpha-9", "gene_name": "ITGA9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32942-1", "protein_name": "Intercellular adhesion molecule 3", "gene_name": "ICAM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UMF0-1", "protein_name": "Intercellular adhesion molecule 5", "gene_name": "ICAM5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20702-1", "protein_name": "Integrin alpha-X", "gene_name": "ITGAX", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BX67-1", "protein_name": "Junctional adhesion molecule C", "gene_name": "JAM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17301-1", "protein_name": "Integrin alpha-2", "gene_name": "ITGA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57087-1", "protein_name": "Junctional adhesion molecule B", "gene_name": "JAM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26012-1", "protein_name": "Integrin beta-8", "gene_name": "ITGB8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P56199-1", "protein_name": "Integrin alpha-1", "gene_name": "ITGA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19320-1", "protein_name": "Vascular cell adhesion protein 1", "gene_name": "VCAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35555-1", "protein_name": "Fibrillin-1", "gene_name": "FBN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13598-1", "protein_name": "Intercellular adhesion molecule 2", "gene_name": "ICAM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24821-1", "protein_name": "Tenascin", "gene_name": "TNC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39060-3", "protein_name": "Collagen alpha-1(XVIII) chain", "gene_name": "COL18A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05107-1", "protein_name": "Integrin beta-2", "gene_name": "ITGB2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P98160", "url": "https://www.uniprot.org/uniprotkb/P98160" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.1588291", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 84 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Canstatin acts on endothelial and tumor cells via mitochondrial damage initiated through interaction with alphavbeta3 and alphavbeta5 integrins.", "journal": "Cancer research", "date": "2005", "authors": "Magnon C, Galaup A, Mullan B, Rouffiac V, Bouquet C, Bidart JM, Griscelli F, Opolon P, Perricaudet M", "reference": { "type": "PubMed", "id": "15899827", "url": "https://pubmed.ncbi.nlm.nih.gov/15899827" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P98160-1", "protein_name": "Basement membrane-specific heparan sulfate proteoglycan core protein", "gene_name": "HSPG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51884-1", "protein_name": "Lumican", "gene_name": "LUM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02452-1", "protein_name": "Collagen alpha-1(I) chain", "gene_name": "COL1A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18084-1", "protein_name": "Integrin beta-5", "gene_name": "ITGB5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02671-1", "protein_name": "Fibrinogen alpha chain", "gene_name": "FGA", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00468-1", "protein_name": "Agrin", "gene_name": "AGRN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02751-15", "protein_name": "Fibronectin", "gene_name": "FN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08722-1", "protein_name": "Leukocyte surface antigen CD47", "gene_name": "CD47", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53420-1", "protein_name": "Collagen alpha-4(IV) chain", "gene_name": "COL4A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02679-1", "protein_name": "Fibrinogen gamma chain", "gene_name": "FGG", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86Y22-1", "protein_name": "Collagen alpha-1(XXIII) chain", "gene_name": "COL23A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20701-1", "protein_name": "Integrin alpha-L", "gene_name": "ITGAL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05362-1", "protein_name": "Intercellular adhesion molecule 1", "gene_name": "ICAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y624-1", "protein_name": "Junctional adhesion molecule A", "gene_name": "F11R", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35613-1", "protein_name": "Basigin", "gene_name": "BSG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P21815-1", "protein_name": "Integrin-binding sialoprotein", "gene_name": "IBSP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49747-1", "protein_name": "Cartilage oligomeric matrix protein", "gene_name": "COMP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04275-1", "protein_name": "von Willebrand factor", "gene_name": "VWF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07996-1", "protein_name": "Thrombospondin-1", "gene_name": "THBS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16070-1", "protein_name": "CD44 antigen", "gene_name": "CD44", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10451-1", "protein_name": "Osteopontin", "gene_name": "SPP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12110-1", "protein_name": "Collagen alpha-2(VI) chain", "gene_name": "COL6A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14031-1", "protein_name": "Collagen alpha-6(IV) chain", "gene_name": "COL4A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20908-1", "protein_name": "Collagen alpha-1(V) chain", "gene_name": "COL5A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02462-1", "protein_name": "Collagen alpha-1(IV) chain", "gene_name": "COL4A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27658-1", "protein_name": "Collagen alpha-1(VIII) chain", "gene_name": "COL8A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08572-1", "protein_name": "Collagen alpha-2(IV) chain", "gene_name": "COL4A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25067-1", "protein_name": "Collagen alpha-2(VIII) chain", "gene_name": "COL8A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20849-1", "protein_name": "Collagen alpha-1(IX) chain", "gene_name": "COL9A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25940-1", "protein_name": "Collagen alpha-3(V) chain", "gene_name": "COL5A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01955-1", "protein_name": "Collagen alpha-3(IV) chain", "gene_name": "COL4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16284-1", "protein_name": "Platelet endothelial cell adhesion molecule", "gene_name": "PECAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35968-1", "protein_name": "Vascular endothelial growth factor receptor 2", "gene_name": "KDR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13683-1", "protein_name": "Integrin alpha-7", "gene_name": "ITGA7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18564-1", "protein_name": "Integrin beta-6", "gene_name": "ITGB6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11215-1", "protein_name": "Integrin alpha-M", "gene_name": "ITGAM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26006-2", "protein_name": "Integrin alpha-3", "gene_name": "ITGA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08514-1", "protein_name": "Integrin alpha-IIb", "gene_name": "ITGA2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38570-1", "protein_name": "Integrin alpha-E", "gene_name": "ITGAE", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75578-1", "protein_name": "Integrin alpha-10", "gene_name": "ITGA10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06756-1", "protein_name": "Integrin alpha-V", "gene_name": "ITGAV", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53708-1", "protein_name": "Integrin alpha-8", "gene_name": "ITGA8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13349-1", "protein_name": "Integrin alpha-D", "gene_name": "ITGAD", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKX5-1", "protein_name": "Integrin alpha-11", "gene_name": "ITGA11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08648-1", "protein_name": "Integrin alpha-5", "gene_name": "ITGA5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13612-1", "protein_name": "Integrin alpha-4", "gene_name": "ITGA4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05556-1", "protein_name": "Integrin beta-1", "gene_name": "ITGB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02461-1", "protein_name": "Collagen alpha-1(III) chain", "gene_name": "COL3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07092-1", "protein_name": "Collagen alpha-1(XVI) chain", "gene_name": "COL16A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29400-1", "protein_name": "Collagen alpha-5(IV) chain", "gene_name": "COL4A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14055-1", "protein_name": "Collagen alpha-2(IX) chain", "gene_name": "COL9A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "A8TX70-1", "protein_name": "Collagen alpha-5(VI) chain", "gene_name": "COL6A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05997-1", "protein_name": "Collagen alpha-2(V) chain", "gene_name": "COL5A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "A6NMZ7-1", "protein_name": "Collagen alpha-6(VI) chain", "gene_name": "COL6A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12111-1", "protein_name": "Collagen alpha-3(VI) chain", "gene_name": "COL6A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5TAT6-1", "protein_name": "Collagen alpha-1(XIII) chain", "gene_name": "COL13A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08123-1", "protein_name": "Collagen alpha-2(I) chain", "gene_name": "COL1A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12109-1", "protein_name": "Collagen alpha-1(VI) chain", "gene_name": "COL6A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02458-2", "protein_name": "Collagen alpha-1(II) chain", "gene_name": "COL2A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02388-1", "protein_name": "Collagen alpha-1(VII) chain", "gene_name": "COL7A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14050-1", "protein_name": "Collagen alpha-3(IX) chain", "gene_name": "COL9A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02675-1", "protein_name": "Fibrinogen beta chain", "gene_name": "FGB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26010-1", "protein_name": "Integrin beta-7", "gene_name": "ITGB7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05106-1", "protein_name": "Integrin beta-3", "gene_name": "ITGB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q03692-1", "protein_name": "Collagen alpha-1(X) chain", "gene_name": "COL10A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12830-1", "protein_name": "Cadherin-1", "gene_name": "CDH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04004-1", "protein_name": "Vitronectin", "gene_name": "VTN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23229-1", "protein_name": "Integrin alpha-6", "gene_name": "ITGA6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14773-1", "protein_name": "Intercellular adhesion molecule 4", "gene_name": "ICAM4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13797-1", "protein_name": "Integrin alpha-9", "gene_name": "ITGA9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32942-1", "protein_name": "Intercellular adhesion molecule 3", "gene_name": "ICAM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UMF0-1", "protein_name": "Intercellular adhesion molecule 5", "gene_name": "ICAM5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20702-1", "protein_name": "Integrin alpha-X", "gene_name": "ITGAX", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BX67-1", "protein_name": "Junctional adhesion molecule C", "gene_name": "JAM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17301-1", "protein_name": "Integrin alpha-2", "gene_name": "ITGA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57087-1", "protein_name": "Junctional adhesion molecule B", "gene_name": "JAM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26012-1", "protein_name": "Integrin beta-8", "gene_name": "ITGB8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P56199-1", "protein_name": "Integrin alpha-1", "gene_name": "ITGA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19320-1", "protein_name": "Vascular cell adhesion protein 1", "gene_name": "VCAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35555-1", "protein_name": "Fibrillin-1", "gene_name": "FBN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13598-1", "protein_name": "Intercellular adhesion molecule 2", "gene_name": "ICAM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24821-1", "protein_name": "Tenascin", "gene_name": "TNC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39060-3", "protein_name": "Collagen alpha-1(XVIII) chain", "gene_name": "COL18A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05107-1", "protein_name": "Integrin beta-2", "gene_name": "ITGB2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P98160", "url": "https://www.uniprot.org/uniprotkb/P98160" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.15899827", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 84 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "ADAM10 mediates E-cadherin shedding and regulates epithelial cell-cell adhesion, migration, and beta-catenin translocation.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2005", "authors": "Maretzky T, Reiss K, Ludwig A, Buchholz J, Scholz F, Proksch E, de Strooper B, Hartmann D, Saftig P", "reference": { "type": "PubMed", "id": "15958533", "url": "https://pubmed.ncbi.nlm.nih.gov/15958533" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P98160-1", "protein_name": "Basement membrane-specific heparan sulfate proteoglycan core protein", "gene_name": "HSPG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15502-3", "protein_name": "Elastin", "gene_name": "ELN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96AH8-1", "protein_name": "Ras-related protein Rab-7b", "gene_name": "RAB7B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q4ADV7-1", "protein_name": "Guanine nucleotide exchange factor subunit RIC1", "gene_name": "RIC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WYP3-1", "protein_name": "Ras and Rab interactor 2", "gene_name": "RIN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96Q05-1", "protein_name": "Trafficking protein particle complex subunit 9", "gene_name": "TRAPPC9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5R8-1", "protein_name": "Trafficking protein particle complex subunit 1", "gene_name": "TRAPPC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y296-1", "protein_name": "Trafficking protein particle complex subunit 4", "gene_name": "TRAPPC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2L5-1", "protein_name": "Trafficking protein particle complex subunit 8", "gene_name": "TRAPPC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "A5PLN9-1", "protein_name": "Trafficking protein particle complex subunit 13", "gene_name": "TRAPPC13", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43897-1", "protein_name": "Tolloid-like protein 1", "gene_name": "TLL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96NW4-1", "protein_name": "Ankyrin repeat domain-containing protein 27", "gene_name": "ANKRD27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96Q42-1", "protein_name": "Alsin", "gene_name": "ALS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NRW1-1", "protein_name": "Ras-related protein Rab-6B", "gene_name": "RAB6B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y243-1", "protein_name": "RAC-gamma serine/threonine-protein kinase", "gene_name": "AKT3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13444-1", "protein_name": "Disintegrin and metalloproteinase domain-containing protein 15", "gene_name": "ADAM15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92542-1", "protein_name": "Nicastrin", "gene_name": "NCSTN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02751-15", "protein_name": "Fibronectin", "gene_name": "FN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75385-1", "protein_name": "Serine/threonine-protein kinase ULK1", "gene_name": "ULK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04632-1", "protein_name": "Calpain small subunit 1", "gene_name": "CAPNS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P86791-1", "protein_name": "Vacuolar fusion protein CCZ1 homolog", "gene_name": "CCZ1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20340-1", "protein_name": "Ras-related protein Rab-6A", "gene_name": "RAB6A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08246-1", "protein_name": "Neutrophil elastase", "gene_name": "ELANE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96DA2-1", "protein_name": "Ras-related protein Rab-39B", "gene_name": "RAB39B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51159-1", "protein_name": "Ras-related protein Rab-27A", "gene_name": "RAB27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00194-1", "protein_name": "Ras-related protein Rab-27B", "gene_name": "RAB27B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NQG7-1", "protein_name": "BLOC-3 complex member HPS4", "gene_name": "HPS4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92902-1", "protein_name": "BLOC-3 complex member HPS1", "gene_name": "HPS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92743-1", "protein_name": "Serine protease HTRA1", "gene_name": "HTRA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBM4-1", "protein_name": "Opticin", "gene_name": "OPTC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16112-1", "protein_name": "Aggrecan core protein", "gene_name": "ACAN", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95248-1", "protein_name": "Myotubularin-related protein 5", "gene_name": "SBF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P03956-1", "protein_name": "Interstitial collagenase", "gene_name": "MMP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39900-1", "protein_name": "Macrophage metalloelastase", "gene_name": "MMP12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14543-1", "protein_name": "Nidogen-1", "gene_name": "NID1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13636-1", "protein_name": "Ras-related protein Rab-31", "gene_name": "RAB31", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57729-1", "protein_name": "Ras-related protein Rab-38", "gene_name": "RAB38", "tax_name": "Human" }, { "uniprot_canonical_ac": "P48553-1", "protein_name": "Trafficking protein particle complex subunit 10", "gene_name": "TRAPPC10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92930-1", "protein_name": "Ras-related protein Rab-8B", "gene_name": "RAB8B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92546-1", "protein_name": "RAB6A-GEF complex partner protein 2", "gene_name": "RGP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZS11-1", "protein_name": "Ras and Rab interactor-like protein", "gene_name": "RINL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWY4-1", "protein_name": "Signal peptide, CUB and EGF-like domain-containing protein 1", "gene_name": "SCUBE1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35613-1", "protein_name": "Basigin", "gene_name": "BSG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50281-1", "protein_name": "Matrix metalloproteinase-14", "gene_name": "MMP14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UL25-1", "protein_name": "Ras-related protein Rab-21", "gene_name": "RAB21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61020-1", "protein_name": "Ras-related protein Rab-5B", "gene_name": "RAB5B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TE57-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 16", "gene_name": "ADAMTS16", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNA0-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 5", "gene_name": "ADAMTS5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6MZZ7-1", "protein_name": "Calpain-13", "gene_name": "CAPN13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07711-1", "protein_name": "Procathepsin L", "gene_name": "CTSL", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75808-1", "protein_name": "Calpain-15", "gene_name": "CAPN15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16070-1", "protein_name": "CD44 antigen", "gene_name": "CD44", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08311-1", "protein_name": "Cathepsin G", "gene_name": "CTSG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10451-1", "protein_name": "Osteopontin", "gene_name": "SPP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IUR0-1", "protein_name": "Trafficking protein particle complex subunit 5", "gene_name": "TRAPPC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25774-1", "protein_name": "Cathepsin S", "gene_name": "CTSS", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15484-1", "protein_name": "Calpain-5", "gene_name": "CAPN5", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60911-1", "protein_name": "Cathepsin L2", "gene_name": "CTSV", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IV53-1", "protein_name": "DENN domain-containing protein 1C", "gene_name": "DENND1C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TEH3-1", "protein_name": "DENN domain-containing protein 1A", "gene_name": "DENND1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07942-1", "protein_name": "Laminin subunit beta-1", "gene_name": "LAMB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49862-1", "protein_name": "Kallikrein-7", "gene_name": "KLK7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13637-1", "protein_name": "Ras-related protein Rab-32", "gene_name": "RAB32", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13753-1", "protein_name": "Laminin subunit gamma-2", "gene_name": "LAMC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11047-1", "protein_name": "Laminin subunit gamma-1", "gene_name": "LAMC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86WG5-1", "protein_name": "Myotubularin-related protein 13", "gene_name": "SBF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P45452-1", "protein_name": "Collagenase 3", "gene_name": "MMP13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24347-1", "protein_name": "Stromelysin-3", "gene_name": "MMP11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09238-1", "protein_name": "Stromelysin-2", "gene_name": "MMP10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51511-1", "protein_name": "Matrix metalloproteinase-15", "gene_name": "MMP15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51151-1", "protein_name": "Ras-related protein Rab-9A", "gene_name": "RAB9A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TB24-1", "protein_name": "Ras and Rab interactor 3", "gene_name": "RIN3", "tax_name": "Human" }, { "uniprot_canonical_ac": "A2RUS2-1", "protein_name": "DENN domain-containing protein 3", "gene_name": "DENND3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96L46-1", "protein_name": "Calpain small subunit 2", "gene_name": "CAPNS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13751-1", "protein_name": "Laminin subunit beta-3", "gene_name": "LAMB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16787-2", "protein_name": "Laminin subunit alpha-3", "gene_name": "LAMA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61006-1", "protein_name": "Ras-related protein Rab-8A", "gene_name": "RAB8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61026-1", "protein_name": "Ras-related protein Rab-10", "gene_name": "RAB10", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15230-1", "protein_name": "Laminin subunit alpha-5", "gene_name": "LAMA5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6IQ22-1", "protein_name": "Ras-related protein Rab-12", "gene_name": "RAB12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0U4-1", "protein_name": "Ras-related protein Rab-1B", "gene_name": "RAB1B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09237-1", "protein_name": "Matrilysin", "gene_name": "MMP7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51153-1", "protein_name": "Ras-related protein Rab-13", "gene_name": "RAB13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6L7-1", "protein_name": "Tolloid-like protein 2", "gene_name": "TLL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42574-1", "protein_name": "Caspase-3", "gene_name": "CASP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96QF0-1", "protein_name": "Rab-3A-interacting protein", "gene_name": "RAB3IP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31749-1", "protein_name": "RAC-alpha serine/threonine-protein kinase", "gene_name": "AKT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q60I27-1", "protein_name": "ALS2 C-terminal-like protein", "gene_name": "ALS2CL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00747-1", "protein_name": "Plasminogen", "gene_name": "PLG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31751-1", "protein_name": "RAC-beta serine/threonine-protein kinase", "gene_name": "AKT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20339-1", "protein_name": "Ras-related protein Rab-5A", "gene_name": "RAB5A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14780-1", "protein_name": "Matrix metalloproteinase-9", "gene_name": "MMP9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61106-1", "protein_name": "Ras-related protein Rab-14", "gene_name": "RAB14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14C86-1", "protein_name": "GTPase-activating protein and VPS9 domain-containing protein 1", "gene_name": "GAPVD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62820-1", "protein_name": "Ras-related protein Rab-1A", "gene_name": "RAB1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31150-1", "protein_name": "Rab GDP dissociation inhibitor alpha", "gene_name": "GDI1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14964-1", "protein_name": "Ras-related protein Rab-39A", "gene_name": "RAB39A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07585-1", "protein_name": "Decorin", "gene_name": "DCN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6W3-1", "protein_name": "Calpain-7", "gene_name": "CAPN7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13497-1", "protein_name": "Bone morphogenetic protein 1", "gene_name": "BMP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "A6NHC0-1", "protein_name": "Calpain-8", "gene_name": "CAPN8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14815-1", "protein_name": "Calpain-9", "gene_name": "CAPN9", "tax_name": "Human" }, { "uniprot_canonical_ac": "A8MX76-1", "protein_name": "Calpain-14", "gene_name": "CAPN14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12830-1", "protein_name": "Cadherin-1", "gene_name": "CDH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZSI9-1", "protein_name": "Calpain-12", "gene_name": "CAPN12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17655-1", "protein_name": "Calpain-2 catalytic subunit", "gene_name": "CAPN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6Q1-1", "protein_name": "Calpain-6", "gene_name": "CAPN6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZUT9-1", "protein_name": "DENN domain-containing protein 5B", "gene_name": "DENND5B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NEG7-1", "protein_name": "Protein DENND6B", "gene_name": "DENND6B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5VZ89-1", "protein_name": "DENN domain-containing protein 4C", "gene_name": "DENND4C", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75064-1", "protein_name": "DENN domain-containing protein 4B", "gene_name": "DENND4B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q68D51-1", "protein_name": "DENN domain-containing protein 2C", "gene_name": "DENND2C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H6A0-1", "protein_name": "DENN domain-containing protein 2D", "gene_name": "DENND2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08253-1", "protein_name": "72 kDa type IV collagenase", "gene_name": "MMP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IX30-1", "protein_name": "Signal peptide, CUB and EGF-like domain-containing protein 3", "gene_name": "SCUBE3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96GW7-1", "protein_name": "Brevican core protein", "gene_name": "BCAN", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43617-1", "protein_name": "Trafficking protein particle complex subunit 3", "gene_name": "TRAPPC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26374-1", "protein_name": "Rab proteins geranylgeranyltransferase component A 2", "gene_name": "CHML", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24386-1", "protein_name": "Rab proteins geranylgeranyltransferase component A 1", "gene_name": "CHM", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15042-1", "protein_name": "Rab3 GTPase-activating protein catalytic subunit", "gene_name": "RAB3GAP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51149-1", "protein_name": "Ras-related protein Rab-7a", "gene_name": "RAB7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75865-1", "protein_name": "Trafficking protein particle complex subunit 6A", "gene_name": "TRAPPC6A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NP72-1", "protein_name": "Ras-related protein Rab-18", "gene_name": "RAB18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2M9-1", "protein_name": "Rab3 GTPase-activating protein non-catalytic subunit", "gene_name": "RAB3GAP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NP90-1", "protein_name": "Ras-related protein Rab-9B", "gene_name": "RAB9B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78524-1", "protein_name": "DENN domain-containing protein 2B", "gene_name": "DENND2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TE60-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 18", "gene_name": "ADAMTS18", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75173-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 4", "gene_name": "ADAMTS4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P2N4-3", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 9", "gene_name": "ADAMTS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHI8-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 1", "gene_name": "ADAMTS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UP79-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 8", "gene_name": "ADAMTS8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20807-1", "protein_name": "Calpain-3", "gene_name": "CAPN3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07384-1", "protein_name": "Calpain-1 catalytic subunit", "gene_name": "CAPN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HC96-1", "protein_name": "Calpain-10", "gene_name": "CAPN10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UJ41-2", "protein_name": "Rab5 GDP/GTP exchange factor", "gene_name": "RABGEF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P43235-1", "protein_name": "Cathepsin K", "gene_name": "CTSK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UMQ6-1", "protein_name": "Calpain-11", "gene_name": "CAPN11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TBN0-1", "protein_name": "Guanine nucleotide exchange factor for Rab-3A", "gene_name": "RAB3IL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P86790-1", "protein_name": "Vacuolar fusion protein CCZ1 homolog B", "gene_name": "CCZ1B; CCZ1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6IQ26-1", "protein_name": "DENN domain-containing protein 5A", "gene_name": "DENND5A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P3S1-1", "protein_name": "DENN domain-containing protein 1B", "gene_name": "DENND1B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWF6-1", "protein_name": "Protein DENND6A", "gene_name": "DENND6A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UL33-1", "protein_name": "Trafficking protein particle complex subunit 2-like protein", "gene_name": "TRAPPC2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9ULE3-1", "protein_name": "DENN domain-containing protein 2A", "gene_name": "DENND2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51148-1", "protein_name": "Ras-related protein Rab-5C", "gene_name": "RAB5C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35555-1", "protein_name": "Fibrillin-1", "gene_name": "FBN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0DI81-1", "protein_name": "Trafficking protein particle complex subunit 2", "gene_name": "TRAPPC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35556-1", "protein_name": "Fibrillin-2", "gene_name": "FBN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q75N90-1", "protein_name": "Fibrillin-3", "gene_name": "FBN3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50395-1", "protein_name": "Rab GDP dissociation inhibitor beta", "gene_name": "GDI2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20810-1", "protein_name": "Calpastatin", "gene_name": "CAST", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08254-1", "protein_name": "Stromelysin-1", "gene_name": "MMP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22894-1", "protein_name": "Neutrophil collagenase", "gene_name": "MMP8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99542-1", "protein_name": "Matrix metalloproteinase-19", "gene_name": "MMP19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20336-1", "protein_name": "Ras-related protein Rab-3A", "gene_name": "RAB3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7L1V2-1", "protein_name": "Vacuolar fusion protein MON1 homolog B", "gene_name": "MON1B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86VX9-1", "protein_name": "Vacuolar fusion protein MON1 homolog A", "gene_name": "MON1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15286-1", "protein_name": "Ras-related protein Rab-35", "gene_name": "RAB35", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60882-1", "protein_name": "Matrix metalloproteinase-20", "gene_name": "MMP20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z401-1", "protein_name": "C-myc promoter-binding protein", "gene_name": "DENND4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WVT3-1", "protein_name": "Trafficking protein particle complex subunit 12", "gene_name": "TRAPPC12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86SZ2-1", "protein_name": "Trafficking protein particle complex subunit 6B", "gene_name": "TRAPPC6B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IU80-4", "protein_name": "Transmembrane protease serine 6", "gene_name": "TMPRSS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z392-1", "protein_name": "Trafficking protein particle complex subunit 11", "gene_name": "TRAPPC11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49768-1", "protein_name": "Presenilin-1", "gene_name": "PSEN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14672-1", "protein_name": "Disintegrin and metalloproteinase domain-containing protein 10", "gene_name": "ADAM10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01023-1", "protein_name": "Alpha-2-macroglobulin", "gene_name": "A2M", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78325-1", "protein_name": "Disintegrin and metalloproteinase domain-containing protein 8", "gene_name": "ADAM8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13671-1", "protein_name": "Ras and Rab interactor 1", "gene_name": "RIN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62258-1", "protein_name": "14-3-3 protein epsilon", "gene_name": "YWHAE", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P98160", "url": "https://www.uniprot.org/uniprotkb/P98160" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.15958533", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 170 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Senile seminal vesicle amyloid is derived from semenogelin I.", "journal": "The Journal of laboratory and clinical medicine", "date": "2005", "authors": "Linke RP, Joswig R, Murphy CL, Wang S, Zhou H, Gross U, Rocken C, Westermark P, Weiss DT, Solomon A", "reference": { "type": "PubMed", "id": "15962837", "url": "https://pubmed.ncbi.nlm.nih.gov/15962837" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P98160-1", "protein_name": "Basement membrane-specific heparan sulfate proteoglycan core protein", "gene_name": "HSPG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61626-1", "protein_name": "Lysozyme C", "gene_name": "LYZ", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0DJI8-1", "protein_name": "Serum amyloid A-1 protein", "gene_name": "SAA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04279-1", "protein_name": "Semenogelin-1", "gene_name": "SEMG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95858-1", "protein_name": "Tetraspanin-15", "gene_name": "TSPAN15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02788-1", "protein_name": "Lactotransferrin", "gene_name": "LTF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02671-1", "protein_name": "Fibrinogen alpha chain", "gene_name": "FGA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92542-1", "protein_name": "Nicastrin", "gene_name": "NCSTN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BI3-1", "protein_name": "Gamma-secretase subunit APH-1A", "gene_name": "APH1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14933-1", "protein_name": "Ubiquitin/ISG15-conjugating enzyme E2 L6", "gene_name": "UBE2L6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09958-1", "protein_name": "Furin", "gene_name": "FURIN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0C0S5-1", "protein_name": "Histone H2A.Z", "gene_name": "H2AZ1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NZ42-1", "protein_name": "Gamma-secretase subunit PEN-2", "gene_name": "PSENEN", "tax_name": "Human" }, { "uniprot_canonical_ac": "A1E959-1", "protein_name": "Odontogenic ameloblast-associated protein", "gene_name": "ODAM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10997-1", "protein_name": "Islet amyloid polypeptide", "gene_name": "IAPP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02743-1", "protein_name": "Serum amyloid P-component", "gene_name": "APCS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01236-1", "protein_name": "Prolactin", "gene_name": "PRL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6H5-1", "protein_name": "Synphilin-1", "gene_name": "SNCAIP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92673-1", "protein_name": "Sortilin-related receptor", "gene_name": "SORL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84243-1", "protein_name": "Histone H3.3", "gene_name": "H3-3A; H3-3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15582-1", "protein_name": "Transforming growth factor-beta-induced protein ig-h3", "gene_name": "TGFBI", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02649-1", "protein_name": "Apolipoprotein E", "gene_name": "APOE", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01258-1", "protein_name": "Calcitonin", "gene_name": "CALCA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UJY5-1", "protein_name": "ADP-ribosylation factor-binding protein GGA1", "gene_name": "GGA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05937-1", "protein_name": "Calbindin", "gene_name": "CALB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02766-1", "protein_name": "Transthyretin", "gene_name": "TTR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y287-1", "protein_name": "Integral membrane protein 2B", "gene_name": "ITM2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43255-1", "protein_name": "E3 ubiquitin-protein ligase SIAH2", "gene_name": "SIAH2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62079-1", "protein_name": "Tetraspanin-5", "gene_name": "TSPAN5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86UF1-1", "protein_name": "Tetraspanin-33", "gene_name": "TSPAN33", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62805-1", "protein_name": "Histone H4", "gene_name": "H4C11; H4C12; H4C13; H4C14; H4C15; H4C16; H4C1; H4C2; H4C3; H4C4; H4C5; H4C6; H4C8; H4C9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68431-1", "protein_name": "Histone H3.1", "gene_name": "H3C10; H3C11; H3C12; H3C1; H3C2; H3C3; H3C4; H3C6; H3C7; H3C8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61769-1", "protein_name": "Beta-2-microglobulin", "gene_name": "B2M", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01160-1", "protein_name": "Natriuretic peptides A", "gene_name": "NPPA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06727-1", "protein_name": "Apolipoprotein A-IV", "gene_name": "APOA4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WW43-1", "protein_name": "Gamma-secretase subunit APH-1B", "gene_name": "APH1B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16778-1", "protein_name": "Histone H2B type 2-E", "gene_name": "H2BC21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62807-1", "protein_name": "Histone H2B type 1-C/E/F/G/I", "gene_name": "H2BC10; H2BC4; H2BC6; H2BC7; H2BC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06396-1", "protein_name": "Gelsolin", "gene_name": "GSN", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60260-1", "protein_name": "E3 ubiquitin-protein ligase parkin", "gene_name": "PRKN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01034-1", "protein_name": "Cystatin-C", "gene_name": "CST3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NZ52-1", "protein_name": "ADP-ribosylation factor-binding protein GGA3", "gene_name": "GGA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71DI3-1", "protein_name": "Histone H3.2", "gene_name": "H3C13; H3C14; H3C15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UJY4-1", "protein_name": "ADP-ribosylation factor-binding protein GGA2", "gene_name": "GGA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16104-1", "protein_name": "Histone H2AX", "gene_name": "H2AX", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33778-1", "protein_name": "Histone H2B type 1-B", "gene_name": "H2BC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P58876-1", "protein_name": "Histone H2B type 1-D", "gene_name": "H2BC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A08-1", "protein_name": "Histone H2B type 1-A", "gene_name": "H2BC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23527-1", "protein_name": "Histone H2B type 1-O", "gene_name": "H2BC17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0C5Y9-1", "protein_name": "Histone H2A-Bbd type 1", "gene_name": "H2AB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93008-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 9X", "gene_name": "USP9X", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60814-1", "protein_name": "Histone H2B type 1-K", "gene_name": "H2BC12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93077-1", "protein_name": "Histone H2A type 1-C", "gene_name": "H2AC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93079-1", "protein_name": "Histone H2B type 1-H", "gene_name": "H2BC9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99879-1", "protein_name": "Histone H2B type 1-M", "gene_name": "H2BC14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NG11-1", "protein_name": "Tetraspanin-14", "gene_name": "TSPAN14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHE5-1", "protein_name": "N-acetyltransferase 8", "gene_name": "NAT8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHF3-1", "protein_name": "N-acetyltransferase 8B", "gene_name": "NAT8B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P56817-1", "protein_name": "Beta-secretase 1", "gene_name": "BACE1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG47-1", "protein_name": "Polyubiquitin-B", "gene_name": "UBB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01308-1", "protein_name": "Insulin", "gene_name": "INS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04908-1", "protein_name": "Histone H2A type 1-B/E", "gene_name": "H2AC4; H2AC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06899-1", "protein_name": "Histone H2B type 1-J", "gene_name": "H2BC11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20671-1", "protein_name": "Histone H2A type 1-D", "gene_name": "H2AC7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57053-1", "protein_name": "Histone H2B type F-S", "gene_name": "H2BC12L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16777-1", "protein_name": "Histone H2A type 2-C", "gene_name": "H2AC20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6FI13-1", "protein_name": "Histone H2A type 2-A", "gene_name": "H2AC18; H2AC19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N257-1", "protein_name": "Histone H2B type 3-B", "gene_name": "H2BC26", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99877-1", "protein_name": "Histone H2B type 1-N", "gene_name": "H2BC15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99878-1", "protein_name": "Histone H2A type 1-J", "gene_name": "H2AC14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99880-1", "protein_name": "Histone H2B type 1-L", "gene_name": "H2BC13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08431-1", "protein_name": "Lactadherin", "gene_name": "MFGE8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05067-1", "protein_name": "Amyloid-beta precursor protein", "gene_name": "APP", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14672-1", "protein_name": "Disintegrin and metalloproteinase domain-containing protein 10", "gene_name": "ADAM10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02647-1", "protein_name": "Apolipoprotein A-I", "gene_name": "APOA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IUQ4-1", "protein_name": "E3 ubiquitin-protein ligase SIAH1", "gene_name": "SIAH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG48-1", "protein_name": "Polyubiquitin-C", "gene_name": "UBC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P37840-1", "protein_name": "Alpha-synuclein", "gene_name": "SNCA", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P98160", "url": "https://www.uniprot.org/uniprotkb/P98160" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.15962837", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 80 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Critical role of the fifth domain of E-cadherin for heterophilic adhesion with alpha E beta 7, but not for homophilic adhesion.", "journal": "Journal of immunology (Baltimore, Md. : 1950)", "date": "2005", "authors": "Shiraishi K, Tsuzaka K, Yoshimoto K, Kumazawa C, Nozaki K, Abe T, Tsubota K, Takeuchi T", "reference": { "type": "PubMed", "id": "16002701", "url": "https://pubmed.ncbi.nlm.nih.gov/16002701" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P98160-1", "protein_name": "Basement membrane-specific heparan sulfate proteoglycan core protein", "gene_name": "HSPG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51884-1", "protein_name": "Lumican", "gene_name": "LUM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02452-1", "protein_name": "Collagen alpha-1(I) chain", "gene_name": "COL1A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18084-1", "protein_name": "Integrin beta-5", "gene_name": "ITGB5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02671-1", "protein_name": "Fibrinogen alpha chain", "gene_name": "FGA", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00468-1", "protein_name": "Agrin", "gene_name": "AGRN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02751-15", "protein_name": "Fibronectin", "gene_name": "FN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08722-1", "protein_name": "Leukocyte surface antigen CD47", "gene_name": "CD47", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53420-1", "protein_name": "Collagen alpha-4(IV) chain", "gene_name": "COL4A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02679-1", "protein_name": "Fibrinogen gamma chain", "gene_name": "FGG", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86Y22-1", "protein_name": "Collagen alpha-1(XXIII) chain", "gene_name": "COL23A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20701-1", "protein_name": "Integrin alpha-L", "gene_name": "ITGAL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05362-1", "protein_name": "Intercellular adhesion molecule 1", "gene_name": "ICAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y624-1", "protein_name": "Junctional adhesion molecule A", "gene_name": "F11R", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35613-1", "protein_name": "Basigin", "gene_name": "BSG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P21815-1", "protein_name": "Integrin-binding sialoprotein", "gene_name": "IBSP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49747-1", "protein_name": "Cartilage oligomeric matrix protein", "gene_name": "COMP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04275-1", "protein_name": "von Willebrand factor", "gene_name": "VWF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07996-1", "protein_name": "Thrombospondin-1", "gene_name": "THBS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16070-1", "protein_name": "CD44 antigen", "gene_name": "CD44", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10451-1", "protein_name": "Osteopontin", "gene_name": "SPP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12110-1", "protein_name": "Collagen alpha-2(VI) chain", "gene_name": "COL6A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14031-1", "protein_name": "Collagen alpha-6(IV) chain", "gene_name": "COL4A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20908-1", "protein_name": "Collagen alpha-1(V) chain", "gene_name": "COL5A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02462-1", "protein_name": "Collagen alpha-1(IV) chain", "gene_name": "COL4A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27658-1", "protein_name": "Collagen alpha-1(VIII) chain", "gene_name": "COL8A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08572-1", "protein_name": "Collagen alpha-2(IV) chain", "gene_name": "COL4A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25067-1", "protein_name": "Collagen alpha-2(VIII) chain", "gene_name": "COL8A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20849-1", "protein_name": "Collagen alpha-1(IX) chain", "gene_name": "COL9A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25940-1", "protein_name": "Collagen alpha-3(V) chain", "gene_name": "COL5A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01955-1", "protein_name": "Collagen alpha-3(IV) chain", "gene_name": "COL4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16284-1", "protein_name": "Platelet endothelial cell adhesion molecule", "gene_name": "PECAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35968-1", "protein_name": "Vascular endothelial growth factor receptor 2", "gene_name": "KDR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13683-1", "protein_name": "Integrin alpha-7", "gene_name": "ITGA7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18564-1", "protein_name": "Integrin beta-6", "gene_name": "ITGB6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11215-1", "protein_name": "Integrin alpha-M", "gene_name": "ITGAM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26006-2", "protein_name": "Integrin alpha-3", "gene_name": "ITGA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08514-1", "protein_name": "Integrin alpha-IIb", "gene_name": "ITGA2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38570-1", "protein_name": "Integrin alpha-E", "gene_name": "ITGAE", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75578-1", "protein_name": "Integrin alpha-10", "gene_name": "ITGA10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06756-1", "protein_name": "Integrin alpha-V", "gene_name": "ITGAV", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53708-1", "protein_name": "Integrin alpha-8", "gene_name": "ITGA8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13349-1", "protein_name": "Integrin alpha-D", "gene_name": "ITGAD", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKX5-1", "protein_name": "Integrin alpha-11", "gene_name": "ITGA11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08648-1", "protein_name": "Integrin alpha-5", "gene_name": "ITGA5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13612-1", "protein_name": "Integrin alpha-4", "gene_name": "ITGA4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05556-1", "protein_name": "Integrin beta-1", "gene_name": "ITGB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02461-1", "protein_name": "Collagen alpha-1(III) chain", "gene_name": "COL3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07092-1", "protein_name": "Collagen alpha-1(XVI) chain", "gene_name": "COL16A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29400-1", "protein_name": "Collagen alpha-5(IV) chain", "gene_name": "COL4A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14055-1", "protein_name": "Collagen alpha-2(IX) chain", "gene_name": "COL9A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "A8TX70-1", "protein_name": "Collagen alpha-5(VI) chain", "gene_name": "COL6A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05997-1", "protein_name": "Collagen alpha-2(V) chain", "gene_name": "COL5A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "A6NMZ7-1", "protein_name": "Collagen alpha-6(VI) chain", "gene_name": "COL6A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12111-1", "protein_name": "Collagen alpha-3(VI) chain", "gene_name": "COL6A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5TAT6-1", "protein_name": "Collagen alpha-1(XIII) chain", "gene_name": "COL13A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08123-1", "protein_name": "Collagen alpha-2(I) chain", "gene_name": "COL1A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12109-1", "protein_name": "Collagen alpha-1(VI) chain", "gene_name": "COL6A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02458-2", "protein_name": "Collagen alpha-1(II) chain", "gene_name": "COL2A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02388-1", "protein_name": "Collagen alpha-1(VII) chain", "gene_name": "COL7A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14050-1", "protein_name": "Collagen alpha-3(IX) chain", "gene_name": "COL9A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02675-1", "protein_name": "Fibrinogen beta chain", "gene_name": "FGB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26010-1", "protein_name": "Integrin beta-7", "gene_name": "ITGB7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05106-1", "protein_name": "Integrin beta-3", "gene_name": "ITGB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q03692-1", "protein_name": "Collagen alpha-1(X) chain", "gene_name": "COL10A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12830-1", "protein_name": "Cadherin-1", "gene_name": "CDH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04004-1", "protein_name": "Vitronectin", "gene_name": "VTN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23229-1", "protein_name": "Integrin alpha-6", "gene_name": "ITGA6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14773-1", "protein_name": "Intercellular adhesion molecule 4", "gene_name": "ICAM4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13797-1", "protein_name": "Integrin alpha-9", "gene_name": "ITGA9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32942-1", "protein_name": "Intercellular adhesion molecule 3", "gene_name": "ICAM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UMF0-1", "protein_name": "Intercellular adhesion molecule 5", "gene_name": "ICAM5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20702-1", "protein_name": "Integrin alpha-X", "gene_name": "ITGAX", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BX67-1", "protein_name": "Junctional adhesion molecule C", "gene_name": "JAM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17301-1", "protein_name": "Integrin alpha-2", "gene_name": "ITGA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57087-1", "protein_name": "Junctional adhesion molecule B", "gene_name": "JAM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26012-1", "protein_name": "Integrin beta-8", "gene_name": "ITGB8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P56199-1", "protein_name": "Integrin alpha-1", "gene_name": "ITGA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19320-1", "protein_name": "Vascular cell adhesion protein 1", "gene_name": "VCAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35555-1", "protein_name": "Fibrillin-1", "gene_name": "FBN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13598-1", "protein_name": "Intercellular adhesion molecule 2", "gene_name": "ICAM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24821-1", "protein_name": "Tenascin", "gene_name": "TNC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39060-3", "protein_name": "Collagen alpha-1(XVIII) chain", "gene_name": "COL18A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05107-1", "protein_name": "Integrin beta-2", "gene_name": "ITGB2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P98160", "url": "https://www.uniprot.org/uniprotkb/P98160" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.16002701", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 84 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Cartilage oligomeric matrix protein/thrombospondin 5 supports chondrocyte attachment through interaction with integrins.", "journal": "The Journal of biological chemistry", "date": "2005", "authors": "Chen FH, Thomas AO, Hecht JT, Goldring MB, Lawler J", "reference": { "type": "PubMed", "id": "16051604", "url": "https://pubmed.ncbi.nlm.nih.gov/16051604" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P98160-1", "protein_name": "Basement membrane-specific heparan sulfate proteoglycan core protein", "gene_name": "HSPG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51884-1", "protein_name": "Lumican", "gene_name": "LUM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02452-1", "protein_name": "Collagen alpha-1(I) chain", "gene_name": "COL1A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18084-1", "protein_name": "Integrin beta-5", "gene_name": "ITGB5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02671-1", "protein_name": "Fibrinogen alpha chain", "gene_name": "FGA", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00468-1", "protein_name": "Agrin", "gene_name": "AGRN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02751-15", "protein_name": "Fibronectin", "gene_name": "FN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08722-1", "protein_name": "Leukocyte surface antigen CD47", "gene_name": "CD47", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53420-1", "protein_name": "Collagen alpha-4(IV) chain", "gene_name": "COL4A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02679-1", "protein_name": "Fibrinogen gamma chain", "gene_name": "FGG", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86Y22-1", "protein_name": "Collagen alpha-1(XXIII) chain", "gene_name": "COL23A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20701-1", "protein_name": "Integrin alpha-L", "gene_name": "ITGAL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05362-1", "protein_name": "Intercellular adhesion molecule 1", "gene_name": "ICAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y624-1", "protein_name": "Junctional adhesion molecule A", "gene_name": "F11R", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35613-1", "protein_name": "Basigin", "gene_name": "BSG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P21815-1", "protein_name": "Integrin-binding sialoprotein", "gene_name": "IBSP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49747-1", "protein_name": "Cartilage oligomeric matrix protein", "gene_name": "COMP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04275-1", "protein_name": "von Willebrand factor", "gene_name": "VWF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07996-1", "protein_name": "Thrombospondin-1", "gene_name": "THBS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16070-1", "protein_name": "CD44 antigen", "gene_name": "CD44", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10451-1", "protein_name": "Osteopontin", "gene_name": "SPP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12110-1", "protein_name": "Collagen alpha-2(VI) chain", "gene_name": "COL6A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14031-1", "protein_name": "Collagen alpha-6(IV) chain", "gene_name": "COL4A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20908-1", "protein_name": "Collagen alpha-1(V) chain", "gene_name": "COL5A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02462-1", "protein_name": "Collagen alpha-1(IV) chain", "gene_name": "COL4A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27658-1", "protein_name": "Collagen alpha-1(VIII) chain", "gene_name": "COL8A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08572-1", "protein_name": "Collagen alpha-2(IV) chain", "gene_name": "COL4A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25067-1", "protein_name": "Collagen alpha-2(VIII) chain", "gene_name": "COL8A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20849-1", "protein_name": "Collagen alpha-1(IX) chain", "gene_name": "COL9A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25940-1", "protein_name": "Collagen alpha-3(V) chain", "gene_name": "COL5A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01955-1", "protein_name": "Collagen alpha-3(IV) chain", "gene_name": "COL4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16284-1", "protein_name": "Platelet endothelial cell adhesion molecule", "gene_name": "PECAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35968-1", "protein_name": "Vascular endothelial growth factor receptor 2", "gene_name": "KDR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13683-1", "protein_name": "Integrin alpha-7", "gene_name": "ITGA7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18564-1", "protein_name": "Integrin beta-6", "gene_name": "ITGB6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11215-1", "protein_name": "Integrin alpha-M", "gene_name": "ITGAM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26006-2", "protein_name": "Integrin alpha-3", "gene_name": "ITGA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08514-1", "protein_name": "Integrin alpha-IIb", "gene_name": "ITGA2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38570-1", "protein_name": "Integrin alpha-E", "gene_name": "ITGAE", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75578-1", "protein_name": "Integrin alpha-10", "gene_name": "ITGA10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06756-1", "protein_name": "Integrin alpha-V", "gene_name": "ITGAV", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53708-1", "protein_name": "Integrin alpha-8", "gene_name": "ITGA8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13349-1", "protein_name": "Integrin alpha-D", "gene_name": "ITGAD", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKX5-1", "protein_name": "Integrin alpha-11", "gene_name": "ITGA11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08648-1", "protein_name": "Integrin alpha-5", "gene_name": "ITGA5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13612-1", "protein_name": "Integrin alpha-4", "gene_name": "ITGA4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05556-1", "protein_name": "Integrin beta-1", "gene_name": "ITGB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02461-1", "protein_name": "Collagen alpha-1(III) chain", "gene_name": "COL3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07092-1", "protein_name": "Collagen alpha-1(XVI) chain", "gene_name": "COL16A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29400-1", "protein_name": "Collagen alpha-5(IV) chain", "gene_name": "COL4A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14055-1", "protein_name": "Collagen alpha-2(IX) chain", "gene_name": "COL9A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "A8TX70-1", "protein_name": "Collagen alpha-5(VI) chain", "gene_name": "COL6A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05997-1", "protein_name": "Collagen alpha-2(V) chain", "gene_name": "COL5A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "A6NMZ7-1", "protein_name": "Collagen alpha-6(VI) chain", "gene_name": "COL6A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12111-1", "protein_name": "Collagen alpha-3(VI) chain", "gene_name": "COL6A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5TAT6-1", "protein_name": "Collagen alpha-1(XIII) chain", "gene_name": "COL13A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08123-1", "protein_name": "Collagen alpha-2(I) chain", "gene_name": "COL1A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12109-1", "protein_name": "Collagen alpha-1(VI) chain", "gene_name": "COL6A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02458-2", "protein_name": "Collagen alpha-1(II) chain", "gene_name": "COL2A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02388-1", "protein_name": "Collagen alpha-1(VII) chain", "gene_name": "COL7A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14050-1", "protein_name": "Collagen alpha-3(IX) chain", "gene_name": "COL9A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02675-1", "protein_name": "Fibrinogen beta chain", "gene_name": "FGB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26010-1", "protein_name": "Integrin beta-7", "gene_name": "ITGB7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05106-1", "protein_name": "Integrin beta-3", "gene_name": "ITGB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q03692-1", "protein_name": "Collagen alpha-1(X) chain", "gene_name": "COL10A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12830-1", "protein_name": "Cadherin-1", "gene_name": "CDH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04004-1", "protein_name": "Vitronectin", "gene_name": "VTN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23229-1", "protein_name": "Integrin alpha-6", "gene_name": "ITGA6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14773-1", "protein_name": "Intercellular adhesion molecule 4", "gene_name": "ICAM4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13797-1", "protein_name": "Integrin alpha-9", "gene_name": "ITGA9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32942-1", "protein_name": "Intercellular adhesion molecule 3", "gene_name": "ICAM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UMF0-1", "protein_name": "Intercellular adhesion molecule 5", "gene_name": "ICAM5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20702-1", "protein_name": "Integrin alpha-X", "gene_name": "ITGAX", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BX67-1", "protein_name": "Junctional adhesion molecule C", "gene_name": "JAM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17301-1", "protein_name": "Integrin alpha-2", "gene_name": "ITGA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57087-1", "protein_name": "Junctional adhesion molecule B", "gene_name": "JAM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26012-1", "protein_name": "Integrin beta-8", "gene_name": "ITGB8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P56199-1", "protein_name": "Integrin alpha-1", "gene_name": "ITGA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19320-1", "protein_name": "Vascular cell adhesion protein 1", "gene_name": "VCAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35555-1", "protein_name": "Fibrillin-1", "gene_name": "FBN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13598-1", "protein_name": "Intercellular adhesion molecule 2", "gene_name": "ICAM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24821-1", "protein_name": "Tenascin", "gene_name": "TNC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39060-3", "protein_name": "Collagen alpha-1(XVIII) chain", "gene_name": "COL18A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05107-1", "protein_name": "Integrin beta-2", "gene_name": "ITGB2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P98160", "url": "https://www.uniprot.org/uniprotkb/P98160" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.16051604", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 84 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Human glioblastomas overexpress ADAMTS-5 that degrades brevican.", "journal": "Acta neuropathologica", "date": "2005", "authors": "Nakada M, Miyamori H, Kita D, Takahashi T, Yamashita J, Sato H, Miura R, Yamaguchi Y, Okada Y", "reference": { "type": "PubMed", "id": "16133547", "url": "https://pubmed.ncbi.nlm.nih.gov/16133547" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P98160-1", "protein_name": "Basement membrane-specific heparan sulfate proteoglycan core protein", "gene_name": "HSPG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15502-3", "protein_name": "Elastin", "gene_name": "ELN", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43897-1", "protein_name": "Tolloid-like protein 1", "gene_name": "TLL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13444-1", "protein_name": "Disintegrin and metalloproteinase domain-containing protein 15", "gene_name": "ADAM15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92542-1", "protein_name": "Nicastrin", "gene_name": "NCSTN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02751-15", "protein_name": "Fibronectin", "gene_name": "FN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04632-1", "protein_name": "Calpain small subunit 1", "gene_name": "CAPNS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08246-1", "protein_name": "Neutrophil elastase", "gene_name": "ELANE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92743-1", "protein_name": "Serine protease HTRA1", "gene_name": "HTRA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBM4-1", "protein_name": "Opticin", "gene_name": "OPTC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16112-1", "protein_name": "Aggrecan core protein", "gene_name": "ACAN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P03956-1", "protein_name": "Interstitial collagenase", "gene_name": "MMP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39900-1", "protein_name": "Macrophage metalloelastase", "gene_name": "MMP12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14543-1", "protein_name": "Nidogen-1", "gene_name": "NID1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWY4-1", "protein_name": "Signal peptide, CUB and EGF-like domain-containing protein 1", "gene_name": "SCUBE1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35613-1", "protein_name": "Basigin", "gene_name": "BSG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50281-1", "protein_name": "Matrix metalloproteinase-14", "gene_name": "MMP14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TE57-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 16", "gene_name": "ADAMTS16", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNA0-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 5", "gene_name": "ADAMTS5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6MZZ7-1", "protein_name": "Calpain-13", "gene_name": "CAPN13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07711-1", "protein_name": "Procathepsin L", "gene_name": "CTSL", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75808-1", "protein_name": "Calpain-15", "gene_name": "CAPN15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16070-1", "protein_name": "CD44 antigen", "gene_name": "CD44", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08311-1", "protein_name": "Cathepsin G", "gene_name": "CTSG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10451-1", "protein_name": "Osteopontin", "gene_name": "SPP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25774-1", "protein_name": "Cathepsin S", "gene_name": "CTSS", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15484-1", "protein_name": "Calpain-5", "gene_name": "CAPN5", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60911-1", "protein_name": "Cathepsin L2", "gene_name": "CTSV", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07942-1", "protein_name": "Laminin subunit beta-1", "gene_name": "LAMB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49862-1", "protein_name": "Kallikrein-7", "gene_name": "KLK7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13753-1", "protein_name": "Laminin subunit gamma-2", "gene_name": "LAMC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11047-1", "protein_name": "Laminin subunit gamma-1", "gene_name": "LAMC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P45452-1", "protein_name": "Collagenase 3", "gene_name": "MMP13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24347-1", "protein_name": "Stromelysin-3", "gene_name": "MMP11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09238-1", "protein_name": "Stromelysin-2", "gene_name": "MMP10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51511-1", "protein_name": "Matrix metalloproteinase-15", "gene_name": "MMP15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96L46-1", "protein_name": "Calpain small subunit 2", "gene_name": "CAPNS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13751-1", "protein_name": "Laminin subunit beta-3", "gene_name": "LAMB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16787-2", "protein_name": "Laminin subunit alpha-3", "gene_name": "LAMA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15230-1", "protein_name": "Laminin subunit alpha-5", "gene_name": "LAMA5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09237-1", "protein_name": "Matrilysin", "gene_name": "MMP7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6L7-1", "protein_name": "Tolloid-like protein 2", "gene_name": "TLL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42574-1", "protein_name": "Caspase-3", "gene_name": "CASP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00747-1", "protein_name": "Plasminogen", "gene_name": "PLG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14780-1", "protein_name": "Matrix metalloproteinase-9", "gene_name": "MMP9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07585-1", "protein_name": "Decorin", "gene_name": "DCN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6W3-1", "protein_name": "Calpain-7", "gene_name": "CAPN7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13497-1", "protein_name": "Bone morphogenetic protein 1", "gene_name": "BMP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "A6NHC0-1", "protein_name": "Calpain-8", "gene_name": "CAPN8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14815-1", "protein_name": "Calpain-9", "gene_name": "CAPN9", "tax_name": "Human" }, { "uniprot_canonical_ac": "A8MX76-1", "protein_name": "Calpain-14", "gene_name": "CAPN14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12830-1", "protein_name": "Cadherin-1", "gene_name": "CDH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZSI9-1", "protein_name": "Calpain-12", "gene_name": "CAPN12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17655-1", "protein_name": "Calpain-2 catalytic subunit", "gene_name": "CAPN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6Q1-1", "protein_name": "Calpain-6", "gene_name": "CAPN6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08253-1", "protein_name": "72 kDa type IV collagenase", "gene_name": "MMP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IX30-1", "protein_name": "Signal peptide, CUB and EGF-like domain-containing protein 3", "gene_name": "SCUBE3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96GW7-1", "protein_name": "Brevican core protein", "gene_name": "BCAN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TE60-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 18", "gene_name": "ADAMTS18", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75173-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 4", "gene_name": "ADAMTS4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P2N4-3", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 9", "gene_name": "ADAMTS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHI8-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 1", "gene_name": "ADAMTS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UP79-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 8", "gene_name": "ADAMTS8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20807-1", "protein_name": "Calpain-3", "gene_name": "CAPN3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07384-1", "protein_name": "Calpain-1 catalytic subunit", "gene_name": "CAPN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HC96-1", "protein_name": "Calpain-10", "gene_name": "CAPN10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P43235-1", "protein_name": "Cathepsin K", "gene_name": "CTSK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UMQ6-1", "protein_name": "Calpain-11", "gene_name": "CAPN11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35555-1", "protein_name": "Fibrillin-1", "gene_name": "FBN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35556-1", "protein_name": "Fibrillin-2", "gene_name": "FBN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q75N90-1", "protein_name": "Fibrillin-3", "gene_name": "FBN3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20810-1", "protein_name": "Calpastatin", "gene_name": "CAST", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08254-1", "protein_name": "Stromelysin-1", "gene_name": "MMP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22894-1", "protein_name": "Neutrophil collagenase", "gene_name": "MMP8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99542-1", "protein_name": "Matrix metalloproteinase-19", "gene_name": "MMP19", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60882-1", "protein_name": "Matrix metalloproteinase-20", "gene_name": "MMP20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IU80-4", "protein_name": "Transmembrane protease serine 6", "gene_name": "TMPRSS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49768-1", "protein_name": "Presenilin-1", "gene_name": "PSEN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14672-1", "protein_name": "Disintegrin and metalloproteinase domain-containing protein 10", "gene_name": "ADAM10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01023-1", "protein_name": "Alpha-2-macroglobulin", "gene_name": "A2M", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78325-1", "protein_name": "Disintegrin and metalloproteinase domain-containing protein 8", "gene_name": "ADAM8", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P98160", "url": "https://www.uniprot.org/uniprotkb/P98160" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.16133547", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 81 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Molecular defects in Sanfilippo syndrome type B (mucopolysaccharidosis IIIB).", "journal": "Journal of inherited metabolic disease", "date": "2005", "authors": "Beesley CE, Jackson M, Young EP, Vellodi A, Winchester BG", "reference": { "type": "PubMed", "id": "16151907", "url": "https://pubmed.ncbi.nlm.nih.gov/16151907" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P98160-1", "protein_name": "Basement membrane-specific heparan sulfate proteoglycan core protein", "gene_name": "HSPG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75056-1", "protein_name": "Syndecan-3", "gene_name": "SDC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P54802-1", "protein_name": "Alpha-N-acetylglucosaminidase", "gene_name": "NAGLU", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00468-1", "protein_name": "Agrin", "gene_name": "AGRN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51654-1", "protein_name": "Glypican-3", "gene_name": "GPC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22304-1", "protein_name": "Iduronate 2-sulfatase", "gene_name": "IDS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35475-1", "protein_name": "Alpha-L-iduronidase", "gene_name": "IDUA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51688-1", "protein_name": "N-sulphoglucosamine sulphohydrolase", "gene_name": "SGSH", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18827-1", "protein_name": "Syndecan-1", "gene_name": "SDC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07711-1", "protein_name": "Procathepsin L", "gene_name": "CTSL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31431-1", "protein_name": "Syndecan-4", "gene_name": "SDC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y625-1", "protein_name": "Glypican-6", "gene_name": "GPC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N158-1", "protein_name": "Glypican-2", "gene_name": "GPC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P34741-1", "protein_name": "Syndecan-2", "gene_name": "SDC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78333-1", "protein_name": "Glypican-5", "gene_name": "GPC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35052-1", "protein_name": "Glypican-1", "gene_name": "GPC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WWQ2-1", "protein_name": "Inactive heparanase-2", "gene_name": "HPSE2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y251-1", "protein_name": "Heparanase", "gene_name": "HPSE", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75487-1", "protein_name": "Glypican-4", "gene_name": "GPC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q68CP4-1", "protein_name": "Heparan-alpha-glucosaminide N-acetyltransferase", "gene_name": "HGSNAT", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P98160", "url": "https://www.uniprot.org/uniprotkb/P98160" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.16151907", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 20 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Discovery of the novel antithrombotic agent 5-chloro-N-({(5S)-2-oxo-3- [4-(3-oxomorpholin-4-yl)phenyl]-1,3-oxazolidin-5-yl}methyl)thiophene- 2-carboxamide (BAY 59-7939): an oral, direct factor Xa inhibitor.", "journal": "Journal of medicinal chemistry", "date": "2005", "authors": "Roehrig S, Straub A, Pohlmann J, Lampe T, Pernerstorfer J, Schlemmer KH, Reinemer P, Perzborn E", "reference": { "type": "PubMed", "id": "16161994", "url": "https://pubmed.ncbi.nlm.nih.gov/16161994" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P98160-1", "protein_name": "Basement membrane-specific heparan sulfate proteoglycan core protein", "gene_name": "HSPG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75056-1", "protein_name": "Syndecan-3", "gene_name": "SDC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07204-1", "protein_name": "Thrombomodulin", "gene_name": "THBD", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00734-1", "protein_name": "Prothrombin", "gene_name": "F2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q4KMQ2-1", "protein_name": "Anoctamin-6", "gene_name": "ANO6", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00468-1", "protein_name": "Agrin", "gene_name": "AGRN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q75V66-1", "protein_name": "Anoctamin-5", "gene_name": "ANO5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01008-1", "protein_name": "Antithrombin-III", "gene_name": "SERPINC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07093-1", "protein_name": "Glia-derived nexin", "gene_name": "SERPINE2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNN8-1", "protein_name": "Endothelial protein C receptor", "gene_name": "PROCR", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51654-1", "protein_name": "Glypican-3", "gene_name": "GPC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07359-1", "protein_name": "Platelet glycoprotein Ib alpha chain", "gene_name": "GP1BA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13224-1", "protein_name": "Platelet glycoprotein Ib beta chain", "gene_name": "GP1BB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24158-1", "protein_name": "Myeloblastin", "gene_name": "PRTN3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25116-1", "protein_name": "Proteinase-activated receptor 1", "gene_name": "F2R", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18827-1", "protein_name": "Syndecan-1", "gene_name": "SDC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04275-1", "protein_name": "von Willebrand factor", "gene_name": "VWF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17405-1", "protein_name": "Sphingomyelin phosphodiesterase", "gene_name": "SMPD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q76LX8-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 13", "gene_name": "ADAMTS13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N6Q3-1", "protein_name": "CD177 antigen", "gene_name": "CD177", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31431-1", "protein_name": "Syndecan-4", "gene_name": "SDC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y625-1", "protein_name": "Glypican-6", "gene_name": "GPC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05154-1", "protein_name": "Plasma serine protease inhibitor", "gene_name": "SERPINA5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05155-1", "protein_name": "Plasma protease C1 inhibitor", "gene_name": "SERPING1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N158-1", "protein_name": "Glypican-2", "gene_name": "GPC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P03951-1", "protein_name": "Coagulation factor XI", "gene_name": "F11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00451-1", "protein_name": "Coagulation factor VIII", "gene_name": "F8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00740-1", "protein_name": "Coagulation factor IX", "gene_name": "F9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02776-1", "protein_name": "Platelet factor 4", "gene_name": "PF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04070-1", "protein_name": "Vitamin K-dependent protein C", "gene_name": "PROC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P34741-1", "protein_name": "Syndecan-2", "gene_name": "SDC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12259-1", "protein_name": "Coagulation factor V", "gene_name": "F5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78333-1", "protein_name": "Glypican-5", "gene_name": "GPC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35052-1", "protein_name": "Glypican-1", "gene_name": "GPC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UK55-1", "protein_name": "Protein Z-dependent protease inhibitor", "gene_name": "SERPINA10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10720-1", "protein_name": "Platelet factor 4 variant", "gene_name": "PF4V1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07225-1", "protein_name": "Vitamin K-dependent protein S", "gene_name": "PROS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05546-1", "protein_name": "Heparin cofactor 2", "gene_name": "SERPIND1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22891-1", "protein_name": "Vitamin K-dependent protein Z", "gene_name": "PROZ", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00742-1", "protein_name": "Coagulation factor X", "gene_name": "F10", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75487-1", "protein_name": "Glypican-4", "gene_name": "GPC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14770-1", "protein_name": "Platelet glycoprotein IX", "gene_name": "GP9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40197-1", "protein_name": "Platelet glycoprotein V", "gene_name": "GP5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08709-1", "protein_name": "Coagulation factor VII", "gene_name": "F7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13726-1", "protein_name": "Tissue factor", "gene_name": "F3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05067-1", "protein_name": "Amyloid-beta precursor protein", "gene_name": "APP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05121-1", "protein_name": "Plasminogen activator inhibitor 1", "gene_name": "SERPINE1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P98160", "url": "https://www.uniprot.org/uniprotkb/P98160" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.16161994", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 47 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Neuronal sorting protein-related receptor sorLA/LR11 regulates processing of the amyloid precursor protein.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2005", "authors": "Andersen OM, Reiche J, Schmidt V, Gotthardt M, Spoelgen R, Behlke J, von Arnim CA, Breiderhoff T, Jansen P, Wu X, Bales KR, Cappai R, Masters CL, Gliemann J, Mufson EJ, Hyman BT, Paul SM, Nykjaer A, Willnow TE", "reference": { "type": "PubMed", "id": "16174740", "url": "https://pubmed.ncbi.nlm.nih.gov/16174740" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P98160-1", "protein_name": "Basement membrane-specific heparan sulfate proteoglycan core protein", "gene_name": "HSPG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61626-1", "protein_name": "Lysozyme C", "gene_name": "LYZ", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0DJI8-1", "protein_name": "Serum amyloid A-1 protein", "gene_name": "SAA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04279-1", "protein_name": "Semenogelin-1", "gene_name": "SEMG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95858-1", "protein_name": "Tetraspanin-15", "gene_name": "TSPAN15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02788-1", "protein_name": "Lactotransferrin", "gene_name": "LTF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02671-1", "protein_name": "Fibrinogen alpha chain", "gene_name": "FGA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92542-1", "protein_name": "Nicastrin", "gene_name": "NCSTN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BI3-1", "protein_name": "Gamma-secretase subunit APH-1A", "gene_name": "APH1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14933-1", "protein_name": "Ubiquitin/ISG15-conjugating enzyme E2 L6", "gene_name": "UBE2L6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09958-1", "protein_name": "Furin", "gene_name": "FURIN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0C0S5-1", "protein_name": "Histone H2A.Z", "gene_name": "H2AZ1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NZ42-1", "protein_name": "Gamma-secretase subunit PEN-2", "gene_name": "PSENEN", "tax_name": "Human" }, { "uniprot_canonical_ac": "A1E959-1", "protein_name": "Odontogenic ameloblast-associated protein", "gene_name": "ODAM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10997-1", "protein_name": "Islet amyloid polypeptide", "gene_name": "IAPP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02743-1", "protein_name": "Serum amyloid P-component", "gene_name": "APCS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01236-1", "protein_name": "Prolactin", "gene_name": "PRL", "tax_name": "Human" }, { "uniprot_canonical_ac": "O88307-1", "protein_name": "Sortilin-related receptor", "gene_name": "Sorl1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9Y6H5-1", "protein_name": "Synphilin-1", "gene_name": "SNCAIP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92673-1", "protein_name": "Sortilin-related receptor", "gene_name": "SORL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84243-1", "protein_name": "Histone H3.3", "gene_name": "H3-3A; H3-3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15582-1", "protein_name": "Transforming growth factor-beta-induced protein ig-h3", "gene_name": "TGFBI", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02649-1", "protein_name": "Apolipoprotein E", "gene_name": "APOE", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01258-1", "protein_name": "Calcitonin", "gene_name": "CALCA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UJY5-1", "protein_name": "ADP-ribosylation factor-binding protein GGA1", "gene_name": "GGA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05937-1", "protein_name": "Calbindin", "gene_name": "CALB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02766-1", "protein_name": "Transthyretin", "gene_name": "TTR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y287-1", "protein_name": "Integral membrane protein 2B", "gene_name": "ITM2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43255-1", "protein_name": "E3 ubiquitin-protein ligase SIAH2", "gene_name": "SIAH2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62079-1", "protein_name": "Tetraspanin-5", "gene_name": "TSPAN5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86UF1-1", "protein_name": "Tetraspanin-33", "gene_name": "TSPAN33", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62805-1", "protein_name": "Histone H4", "gene_name": "H4C11; H4C12; H4C13; H4C14; H4C15; H4C16; H4C1; H4C2; H4C3; H4C4; H4C5; H4C6; H4C8; H4C9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68431-1", "protein_name": "Histone H3.1", "gene_name": "H3C10; H3C11; H3C12; H3C1; H3C2; H3C3; H3C4; H3C6; H3C7; H3C8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61769-1", "protein_name": "Beta-2-microglobulin", "gene_name": "B2M", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01160-1", "protein_name": "Natriuretic peptides A", "gene_name": "NPPA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06727-1", "protein_name": "Apolipoprotein A-IV", "gene_name": "APOA4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WW43-1", "protein_name": "Gamma-secretase subunit APH-1B", "gene_name": "APH1B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16778-1", "protein_name": "Histone H2B type 2-E", "gene_name": "H2BC21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62807-1", "protein_name": "Histone H2B type 1-C/E/F/G/I", "gene_name": "H2BC10; H2BC4; H2BC6; H2BC7; H2BC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06396-1", "protein_name": "Gelsolin", "gene_name": "GSN", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60260-1", "protein_name": "E3 ubiquitin-protein ligase parkin", "gene_name": "PRKN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01034-1", "protein_name": "Cystatin-C", "gene_name": "CST3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NZ52-1", "protein_name": "ADP-ribosylation factor-binding protein GGA3", "gene_name": "GGA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71DI3-1", "protein_name": "Histone H3.2", "gene_name": "H3C13; H3C14; H3C15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UJY4-1", "protein_name": "ADP-ribosylation factor-binding protein GGA2", "gene_name": "GGA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16104-1", "protein_name": "Histone H2AX", "gene_name": "H2AX", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33778-1", "protein_name": "Histone H2B type 1-B", "gene_name": "H2BC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P58876-1", "protein_name": "Histone H2B type 1-D", "gene_name": "H2BC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A08-1", "protein_name": "Histone H2B type 1-A", "gene_name": "H2BC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23527-1", "protein_name": "Histone H2B type 1-O", "gene_name": "H2BC17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0C5Y9-1", "protein_name": "Histone H2A-Bbd type 1", "gene_name": "H2AB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93008-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 9X", "gene_name": "USP9X", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60814-1", "protein_name": "Histone H2B type 1-K", "gene_name": "H2BC12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93077-1", "protein_name": "Histone H2A type 1-C", "gene_name": "H2AC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93079-1", "protein_name": "Histone H2B type 1-H", "gene_name": "H2BC9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99879-1", "protein_name": "Histone H2B type 1-M", "gene_name": "H2BC14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NG11-1", "protein_name": "Tetraspanin-14", "gene_name": "TSPAN14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHE5-1", "protein_name": "N-acetyltransferase 8", "gene_name": "NAT8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHF3-1", "protein_name": "N-acetyltransferase 8B", "gene_name": "NAT8B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P56817-1", "protein_name": "Beta-secretase 1", "gene_name": "BACE1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG47-1", "protein_name": "Polyubiquitin-B", "gene_name": "UBB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01308-1", "protein_name": "Insulin", "gene_name": "INS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04908-1", "protein_name": "Histone H2A type 1-B/E", "gene_name": "H2AC4; H2AC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06899-1", "protein_name": "Histone H2B type 1-J", "gene_name": "H2BC11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20671-1", "protein_name": "Histone H2A type 1-D", "gene_name": "H2AC7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57053-1", "protein_name": "Histone H2B type F-S", "gene_name": "H2BC12L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16777-1", "protein_name": "Histone H2A type 2-C", "gene_name": "H2AC20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6FI13-1", "protein_name": "Histone H2A type 2-A", "gene_name": "H2AC18; H2AC19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N257-1", "protein_name": "Histone H2B type 3-B", "gene_name": "H2BC26", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99877-1", "protein_name": "Histone H2B type 1-N", "gene_name": "H2BC15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99878-1", "protein_name": "Histone H2A type 1-J", "gene_name": "H2AC14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99880-1", "protein_name": "Histone H2B type 1-L", "gene_name": "H2BC13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08431-1", "protein_name": "Lactadherin", "gene_name": "MFGE8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12023-1", "protein_name": "Amyloid-beta precursor protein", "gene_name": "App", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P05067-1", "protein_name": "Amyloid-beta precursor protein", "gene_name": "APP", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14672-1", "protein_name": "Disintegrin and metalloproteinase domain-containing protein 10", "gene_name": "ADAM10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02647-1", "protein_name": "Apolipoprotein A-I", "gene_name": "APOA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IUQ4-1", "protein_name": "E3 ubiquitin-protein ligase SIAH1", "gene_name": "SIAH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG48-1", "protein_name": "Polyubiquitin-C", "gene_name": "UBC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P37840-1", "protein_name": "Alpha-synuclein", "gene_name": "SNCA", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P98160", "url": "https://www.uniprot.org/uniprotkb/P98160" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.16174740", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 82 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Characterization of the interaction between the A2 subunit and A1/A3-C1-C2 dimer in human factor VIIIa.", "journal": "The Journal of biological chemistry", "date": "1992", "authors": "Fay PJ, Smudzin TM", "reference": { "type": "PubMed", "id": "1618828", "url": "https://pubmed.ncbi.nlm.nih.gov/1618828" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P98160-1", "protein_name": "Basement membrane-specific heparan sulfate proteoglycan core protein", "gene_name": "HSPG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75056-1", "protein_name": "Syndecan-3", "gene_name": "SDC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07204-1", "protein_name": "Thrombomodulin", "gene_name": "THBD", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00734-1", "protein_name": "Prothrombin", "gene_name": "F2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q4KMQ2-1", "protein_name": "Anoctamin-6", "gene_name": "ANO6", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00468-1", "protein_name": "Agrin", "gene_name": "AGRN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q75V66-1", "protein_name": "Anoctamin-5", "gene_name": "ANO5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01008-1", "protein_name": "Antithrombin-III", "gene_name": "SERPINC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07093-1", "protein_name": "Glia-derived nexin", "gene_name": "SERPINE2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNN8-1", "protein_name": "Endothelial protein C receptor", "gene_name": "PROCR", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51654-1", "protein_name": "Glypican-3", "gene_name": "GPC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07359-1", "protein_name": "Platelet glycoprotein Ib alpha chain", "gene_name": "GP1BA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13224-1", "protein_name": "Platelet glycoprotein Ib beta chain", "gene_name": "GP1BB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24158-1", "protein_name": "Myeloblastin", "gene_name": "PRTN3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25116-1", "protein_name": "Proteinase-activated receptor 1", "gene_name": "F2R", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18827-1", "protein_name": "Syndecan-1", "gene_name": "SDC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04275-1", "protein_name": "von Willebrand factor", "gene_name": "VWF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17405-1", "protein_name": "Sphingomyelin phosphodiesterase", "gene_name": "SMPD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q76LX8-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 13", "gene_name": "ADAMTS13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N6Q3-1", "protein_name": "CD177 antigen", "gene_name": "CD177", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31431-1", "protein_name": "Syndecan-4", "gene_name": "SDC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y625-1", "protein_name": "Glypican-6", "gene_name": "GPC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05154-1", "protein_name": "Plasma serine protease inhibitor", "gene_name": "SERPINA5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05155-1", "protein_name": "Plasma protease C1 inhibitor", "gene_name": "SERPING1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N158-1", "protein_name": "Glypican-2", "gene_name": "GPC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P03951-1", "protein_name": "Coagulation factor XI", "gene_name": "F11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00451-1", "protein_name": "Coagulation factor VIII", "gene_name": "F8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00740-1", "protein_name": "Coagulation factor IX", "gene_name": "F9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02776-1", "protein_name": "Platelet factor 4", "gene_name": "PF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04070-1", "protein_name": "Vitamin K-dependent protein C", "gene_name": "PROC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P34741-1", "protein_name": "Syndecan-2", "gene_name": "SDC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12259-1", "protein_name": "Coagulation factor V", "gene_name": "F5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78333-1", "protein_name": "Glypican-5", "gene_name": "GPC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35052-1", "protein_name": "Glypican-1", "gene_name": "GPC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UK55-1", "protein_name": "Protein Z-dependent protease inhibitor", "gene_name": "SERPINA10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10720-1", "protein_name": "Platelet factor 4 variant", "gene_name": "PF4V1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07225-1", "protein_name": "Vitamin K-dependent protein S", "gene_name": "PROS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05546-1", "protein_name": "Heparin cofactor 2", "gene_name": "SERPIND1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22891-1", "protein_name": "Vitamin K-dependent protein Z", "gene_name": "PROZ", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00742-1", "protein_name": "Coagulation factor X", "gene_name": "F10", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75487-1", "protein_name": "Glypican-4", "gene_name": "GPC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14770-1", "protein_name": "Platelet glycoprotein IX", "gene_name": "GP9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40197-1", "protein_name": "Platelet glycoprotein V", "gene_name": "GP5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08709-1", "protein_name": "Coagulation factor VII", "gene_name": "F7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13726-1", "protein_name": "Tissue factor", "gene_name": "F3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05067-1", "protein_name": "Amyloid-beta precursor protein", "gene_name": "APP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05121-1", "protein_name": "Plasminogen activator inhibitor 1", "gene_name": "SERPINE1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P98160", "url": "https://www.uniprot.org/uniprotkb/P98160" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.1618828", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 47 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Apoa5 Q139X truncation predisposes to late-onset hyperchylomicronemia due to lipoprotein lipase impairment.", "journal": "The Journal of clinical investigation", "date": "2005", "authors": "Marcais C, Verges B, Charriere S, Pruneta V, Merlin M, Billon S, Perrot L, Drai J, Sassolas A, Pennacchio LA, Fruchart-Najib J, Fruchart JC, Durlach V, Moulin P", "reference": { "type": "PubMed", "id": "16200213", "url": "https://pubmed.ncbi.nlm.nih.gov/16200213" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P98160-1", "protein_name": "Basement membrane-specific heparan sulfate proteoglycan core protein", "gene_name": "HSPG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02753-1", "protein_name": "Retinol-binding protein 4", "gene_name": "RBP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75056-1", "protein_name": "Syndecan-3", "gene_name": "SDC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00468-1", "protein_name": "Agrin", "gene_name": "AGRN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17516-1", "protein_name": "Aldo-keto reductase family 1 member C4", "gene_name": "AKR1C4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04114-1", "protein_name": "Apolipoprotein B-100", "gene_name": "APOB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07954-1", "protein_name": "Prolow-density lipoprotein receptor-related protein 1", "gene_name": "LRP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95445-1", "protein_name": "Apolipoprotein M", "gene_name": "APOM", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q04828-1", "protein_name": "Aldo-keto reductase family 1 member C1", "gene_name": "AKR1C1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02655-1", "protein_name": "Apolipoprotein C-II", "gene_name": "APOC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42330-1", "protein_name": "Aldo-keto reductase family 1 member C3", "gene_name": "AKR1C3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04118-1", "protein_name": "Colipase", "gene_name": "CLPS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51654-1", "protein_name": "Glypican-3", "gene_name": "GPC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95237-1", "protein_name": "Lecithin retinol acyltransferase", "gene_name": "LRAT", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09455-1", "protein_name": "Retinol-binding protein 1", "gene_name": "RBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TC12-1", "protein_name": "Retinol dehydrogenase 11", "gene_name": "RDH11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50120-1", "protein_name": "Retinol-binding protein 2", "gene_name": "RBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6NUM9-1", "protein_name": "All-trans-retinol 13,14-reductase", "gene_name": "RETSAT", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18827-1", "protein_name": "Syndecan-1", "gene_name": "SDC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02656-1", "protein_name": "Apolipoprotein C-III", "gene_name": "APOC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02649-1", "protein_name": "Apolipoprotein E", "gene_name": "APOE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HAY6-1", "protein_name": "Beta,beta-carotene 15,15'-dioxygenase", "gene_name": "BCO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02766-1", "protein_name": "Transthyretin", "gene_name": "TTR", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31431-1", "protein_name": "Syndecan-4", "gene_name": "SDC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16233-1", "protein_name": "Pancreatic triacylglycerol lipase", "gene_name": "PNLIP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y625-1", "protein_name": "Glypican-6", "gene_name": "GPC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N158-1", "protein_name": "Glypican-2", "gene_name": "GPC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y561-1", "protein_name": "Low-density lipoprotein receptor-related protein 12", "gene_name": "LRP12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P98164-1", "protein_name": "Low-density lipoprotein receptor-related protein 2", "gene_name": "LRP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02652-1", "protein_name": "Apolipoprotein A-II", "gene_name": "APOA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14114-1", "protein_name": "Low-density lipoprotein receptor-related protein 8", "gene_name": "LRP8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06727-1", "protein_name": "Apolipoprotein A-IV", "gene_name": "APOA4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6Q788-1", "protein_name": "Apolipoprotein A-V", "gene_name": "APOA5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01130-1", "protein_name": "Low-density lipoprotein receptor", "gene_name": "LDLR", "tax_name": "Human" }, { "uniprot_canonical_ac": "P34741-1", "protein_name": "Syndecan-2", "gene_name": "SDC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78333-1", "protein_name": "Glypican-5", "gene_name": "GPC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35052-1", "protein_name": "Glypican-1", "gene_name": "GPC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P1J6-1", "protein_name": "Phospholipase B1, membrane-associated", "gene_name": "PLB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BYV7-1", "protein_name": "Carotenoid-cleaving dioxygenase, mitochondrial", "gene_name": "BCO2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75487-1", "protein_name": "Glypican-4", "gene_name": "GPC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IV16-1", "protein_name": "Glycosylphosphatidylinositol-anchored high density lipoprotein-binding protein 1", "gene_name": "GPIHBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06858-1", "protein_name": "Lipoprotein lipase", "gene_name": "LPL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z4F1-1", "protein_name": "Low-density lipoprotein receptor-related protein 10", "gene_name": "LRP10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02647-1", "protein_name": "Apolipoprotein A-I", "gene_name": "APOA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60218-1", "protein_name": "Aldo-keto reductase family 1 member B10", "gene_name": "AKR1B10", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P98160", "url": "https://www.uniprot.org/uniprotkb/P98160" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.16200213", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 45 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Integrin alphaDbeta2, an adhesion receptor up-regulated on macrophage foam cells, exhibits multiligand-binding properties.", "journal": "Blood", "date": "2006", "authors": "Yakubenko VP, Yadav SP, Ugarova TP", "reference": { "type": "PubMed", "id": "16239428", "url": "https://pubmed.ncbi.nlm.nih.gov/16239428" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P98160-1", "protein_name": "Basement membrane-specific heparan sulfate proteoglycan core protein", "gene_name": "HSPG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51884-1", "protein_name": "Lumican", "gene_name": "LUM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02452-1", "protein_name": "Collagen alpha-1(I) chain", "gene_name": "COL1A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18084-1", "protein_name": "Integrin beta-5", "gene_name": "ITGB5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02671-1", "protein_name": "Fibrinogen alpha chain", "gene_name": "FGA", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00468-1", "protein_name": "Agrin", "gene_name": "AGRN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02751-15", "protein_name": "Fibronectin", "gene_name": "FN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08722-1", "protein_name": "Leukocyte surface antigen CD47", "gene_name": "CD47", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53420-1", "protein_name": "Collagen alpha-4(IV) chain", "gene_name": "COL4A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02679-1", "protein_name": "Fibrinogen gamma chain", "gene_name": "FGG", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86Y22-1", "protein_name": "Collagen alpha-1(XXIII) chain", "gene_name": "COL23A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20701-1", "protein_name": "Integrin alpha-L", "gene_name": "ITGAL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05362-1", "protein_name": "Intercellular adhesion molecule 1", "gene_name": "ICAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y624-1", "protein_name": "Junctional adhesion molecule A", "gene_name": "F11R", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35613-1", "protein_name": "Basigin", "gene_name": "BSG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P21815-1", "protein_name": "Integrin-binding sialoprotein", "gene_name": "IBSP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49747-1", "protein_name": "Cartilage oligomeric matrix protein", "gene_name": "COMP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04275-1", "protein_name": "von Willebrand factor", "gene_name": "VWF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07996-1", "protein_name": "Thrombospondin-1", "gene_name": "THBS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16070-1", "protein_name": "CD44 antigen", "gene_name": "CD44", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10451-1", "protein_name": "Osteopontin", "gene_name": "SPP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12110-1", "protein_name": "Collagen alpha-2(VI) chain", "gene_name": "COL6A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14031-1", "protein_name": "Collagen alpha-6(IV) chain", "gene_name": "COL4A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20908-1", "protein_name": "Collagen alpha-1(V) chain", "gene_name": "COL5A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02462-1", "protein_name": "Collagen alpha-1(IV) chain", "gene_name": "COL4A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27658-1", "protein_name": "Collagen alpha-1(VIII) chain", "gene_name": "COL8A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08572-1", "protein_name": "Collagen alpha-2(IV) chain", "gene_name": "COL4A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25067-1", "protein_name": "Collagen alpha-2(VIII) chain", "gene_name": "COL8A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20849-1", "protein_name": "Collagen alpha-1(IX) chain", "gene_name": "COL9A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25940-1", "protein_name": "Collagen alpha-3(V) chain", "gene_name": "COL5A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01955-1", "protein_name": "Collagen alpha-3(IV) chain", "gene_name": "COL4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16284-1", "protein_name": "Platelet endothelial cell adhesion molecule", "gene_name": "PECAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35968-1", "protein_name": "Vascular endothelial growth factor receptor 2", "gene_name": "KDR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13683-1", "protein_name": "Integrin alpha-7", "gene_name": "ITGA7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18564-1", "protein_name": "Integrin beta-6", "gene_name": "ITGB6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11215-1", "protein_name": "Integrin alpha-M", "gene_name": "ITGAM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26006-2", "protein_name": "Integrin alpha-3", "gene_name": "ITGA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08514-1", "protein_name": "Integrin alpha-IIb", "gene_name": "ITGA2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38570-1", "protein_name": "Integrin alpha-E", "gene_name": "ITGAE", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75578-1", "protein_name": "Integrin alpha-10", "gene_name": "ITGA10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06756-1", "protein_name": "Integrin alpha-V", "gene_name": "ITGAV", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53708-1", "protein_name": "Integrin alpha-8", "gene_name": "ITGA8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13349-1", "protein_name": "Integrin alpha-D", "gene_name": "ITGAD", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKX5-1", "protein_name": "Integrin alpha-11", "gene_name": "ITGA11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08648-1", "protein_name": "Integrin alpha-5", "gene_name": "ITGA5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13612-1", "protein_name": "Integrin alpha-4", "gene_name": "ITGA4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05556-1", "protein_name": "Integrin beta-1", "gene_name": "ITGB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02461-1", "protein_name": "Collagen alpha-1(III) chain", "gene_name": "COL3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07092-1", "protein_name": "Collagen alpha-1(XVI) chain", "gene_name": "COL16A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29400-1", "protein_name": "Collagen alpha-5(IV) chain", "gene_name": "COL4A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14055-1", "protein_name": "Collagen alpha-2(IX) chain", "gene_name": "COL9A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "A8TX70-1", "protein_name": "Collagen alpha-5(VI) chain", "gene_name": "COL6A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05997-1", "protein_name": "Collagen alpha-2(V) chain", "gene_name": "COL5A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "A6NMZ7-1", "protein_name": "Collagen alpha-6(VI) chain", "gene_name": "COL6A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12111-1", "protein_name": "Collagen alpha-3(VI) chain", "gene_name": "COL6A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5TAT6-1", "protein_name": "Collagen alpha-1(XIII) chain", "gene_name": "COL13A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08123-1", "protein_name": "Collagen alpha-2(I) chain", "gene_name": "COL1A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12109-1", "protein_name": "Collagen alpha-1(VI) chain", "gene_name": "COL6A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02458-2", "protein_name": "Collagen alpha-1(II) chain", "gene_name": "COL2A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02388-1", "protein_name": "Collagen alpha-1(VII) chain", "gene_name": "COL7A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14050-1", "protein_name": "Collagen alpha-3(IX) chain", "gene_name": "COL9A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02675-1", "protein_name": "Fibrinogen beta chain", "gene_name": "FGB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26010-1", "protein_name": "Integrin beta-7", "gene_name": "ITGB7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05106-1", "protein_name": "Integrin beta-3", "gene_name": "ITGB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q03692-1", "protein_name": "Collagen alpha-1(X) chain", "gene_name": "COL10A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12830-1", "protein_name": "Cadherin-1", "gene_name": "CDH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04004-1", "protein_name": "Vitronectin", "gene_name": "VTN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23229-1", "protein_name": "Integrin alpha-6", "gene_name": "ITGA6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14773-1", "protein_name": "Intercellular adhesion molecule 4", "gene_name": "ICAM4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13797-1", "protein_name": "Integrin alpha-9", "gene_name": "ITGA9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32942-1", "protein_name": "Intercellular adhesion molecule 3", "gene_name": "ICAM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UMF0-1", "protein_name": "Intercellular adhesion molecule 5", "gene_name": "ICAM5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20702-1", "protein_name": "Integrin alpha-X", "gene_name": "ITGAX", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BX67-1", "protein_name": "Junctional adhesion molecule C", "gene_name": "JAM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17301-1", "protein_name": "Integrin alpha-2", "gene_name": "ITGA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57087-1", "protein_name": "Junctional adhesion molecule B", "gene_name": "JAM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26012-1", "protein_name": "Integrin beta-8", "gene_name": "ITGB8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P56199-1", "protein_name": "Integrin alpha-1", "gene_name": "ITGA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19320-1", "protein_name": "Vascular cell adhesion protein 1", "gene_name": "VCAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35555-1", "protein_name": "Fibrillin-1", "gene_name": "FBN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13598-1", "protein_name": "Intercellular adhesion molecule 2", "gene_name": "ICAM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24821-1", "protein_name": "Tenascin", "gene_name": "TNC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39060-3", "protein_name": "Collagen alpha-1(XVIII) chain", "gene_name": "COL18A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05107-1", "protein_name": "Integrin beta-2", "gene_name": "ITGB2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P98160", "url": "https://www.uniprot.org/uniprotkb/P98160" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.16239428", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 84 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Interactions between collagen IX and biglycan measured by atomic force microscopy.", "journal": "Biochemical and biophysical research communications", "date": "2006", "authors": "Chen CH, Yeh ML, Geyer M, Wang GJ, Huang MH, Heggeness MH, Hook M, Luo ZP", "reference": { "type": "PubMed", "id": "16293224", "url": "https://pubmed.ncbi.nlm.nih.gov/16293224" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P98160-1", "protein_name": "Basement membrane-specific heparan sulfate proteoglycan core protein", "gene_name": "HSPG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51884-1", "protein_name": "Lumican", "gene_name": "LUM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02452-1", "protein_name": "Collagen alpha-1(I) chain", "gene_name": "COL1A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18084-1", "protein_name": "Integrin beta-5", "gene_name": "ITGB5", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00468-1", "protein_name": "Agrin", "gene_name": "AGRN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02751-15", "protein_name": "Fibronectin", "gene_name": "FN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P21810-1", "protein_name": "Biglycan", "gene_name": "BGN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92752-1", "protein_name": "Tenascin-R", "gene_name": "TNR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQP3-1", "protein_name": "Tenascin-N", "gene_name": "TNN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53420-1", "protein_name": "Collagen alpha-4(IV) chain", "gene_name": "COL4A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q06828-1", "protein_name": "Fibromodulin", "gene_name": "FMOD", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75096-1", "protein_name": "Low-density lipoprotein receptor-related protein 4", "gene_name": "LRP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10915-1", "protein_name": "Hyaluronan and proteoglycan link protein 1", "gene_name": "HAPLN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16112-1", "protein_name": "Aggrecan core protein", "gene_name": "ACAN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P21815-1", "protein_name": "Integrin-binding sialoprotein", "gene_name": "IBSP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49747-1", "protein_name": "Cartilage oligomeric matrix protein", "gene_name": "COMP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXN1-1", "protein_name": "Asporin", "gene_name": "ASPN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12110-1", "protein_name": "Collagen alpha-2(VI) chain", "gene_name": "COL6A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14031-1", "protein_name": "Collagen alpha-6(IV) chain", "gene_name": "COL4A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20908-1", "protein_name": "Collagen alpha-1(V) chain", "gene_name": "COL5A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02462-1", "protein_name": "Collagen alpha-1(IV) chain", "gene_name": "COL4A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08572-1", "protein_name": "Collagen alpha-2(IV) chain", "gene_name": "COL4A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20849-1", "protein_name": "Collagen alpha-1(IX) chain", "gene_name": "COL9A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25940-1", "protein_name": "Collagen alpha-3(V) chain", "gene_name": "COL5A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01955-1", "protein_name": "Collagen alpha-3(IV) chain", "gene_name": "COL4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14118-1", "protein_name": "Dystroglycan 1", "gene_name": "DAG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07942-1", "protein_name": "Laminin subunit beta-1", "gene_name": "LAMB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24043-1", "protein_name": "Laminin subunit alpha-2", "gene_name": "LAMA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25391-1", "protein_name": "Laminin subunit alpha-1", "gene_name": "LAMA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11047-1", "protein_name": "Laminin subunit gamma-1", "gene_name": "LAMC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10600-1", "protein_name": "Transforming growth factor beta-3 proprotein", "gene_name": "TGFB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13683-1", "protein_name": "Integrin alpha-7", "gene_name": "ITGA7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16787-2", "protein_name": "Laminin subunit alpha-3", "gene_name": "LAMA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18564-1", "protein_name": "Integrin beta-6", "gene_name": "ITGB6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16363-1", "protein_name": "Laminin subunit alpha-4", "gene_name": "LAMA4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15230-1", "protein_name": "Laminin subunit alpha-5", "gene_name": "LAMA5", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95460-1", "protein_name": "Matrilin-4", "gene_name": "MATN4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08514-1", "protein_name": "Integrin alpha-IIb", "gene_name": "ITGA2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06756-1", "protein_name": "Integrin alpha-V", "gene_name": "ITGAV", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53708-1", "protein_name": "Integrin alpha-8", "gene_name": "ITGA8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P21941-1", "protein_name": "Matrilin-1", "gene_name": "MATN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05556-1", "protein_name": "Integrin beta-1", "gene_name": "ITGB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02461-1", "protein_name": "Collagen alpha-1(III) chain", "gene_name": "COL3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29400-1", "protein_name": "Collagen alpha-5(IV) chain", "gene_name": "COL4A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14055-1", "protein_name": "Collagen alpha-2(IX) chain", "gene_name": "COL9A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09486-1", "protein_name": "SPARC", "gene_name": "SPARC", "tax_name": "Human" }, { "uniprot_canonical_ac": "A8TX70-1", "protein_name": "Collagen alpha-5(VI) chain", "gene_name": "COL6A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05997-1", "protein_name": "Collagen alpha-2(V) chain", "gene_name": "COL5A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "A6NMZ7-1", "protein_name": "Collagen alpha-6(VI) chain", "gene_name": "COL6A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12111-1", "protein_name": "Collagen alpha-3(VI) chain", "gene_name": "COL6A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08123-1", "protein_name": "Collagen alpha-2(I) chain", "gene_name": "COL1A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12109-1", "protein_name": "Collagen alpha-1(VI) chain", "gene_name": "COL6A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02458-2", "protein_name": "Collagen alpha-1(II) chain", "gene_name": "COL2A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14050-1", "protein_name": "Collagen alpha-3(IX) chain", "gene_name": "COL9A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05106-1", "protein_name": "Integrin beta-3", "gene_name": "ITGB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13611-1", "protein_name": "Versican core protein", "gene_name": "VCAN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07585-1", "protein_name": "Decorin", "gene_name": "DCN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04004-1", "protein_name": "Vitronectin", "gene_name": "VTN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NZW4-1", "protein_name": "Dentin sialophosphoprotein", "gene_name": "DSPP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13797-1", "protein_name": "Integrin alpha-9", "gene_name": "ITGA9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96GW7-1", "protein_name": "Brevican core protein", "gene_name": "BCAN", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15146-1", "protein_name": "Muscle, skeletal receptor tyrosine-protein kinase", "gene_name": "MUSK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13332-1", "protein_name": "Receptor-type tyrosine-protein phosphatase S", "gene_name": "PTPRS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20702-1", "protein_name": "Integrin alpha-X", "gene_name": "ITGAX", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17301-1", "protein_name": "Integrin alpha-2", "gene_name": "ITGA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15232-1", "protein_name": "Matrilin-3", "gene_name": "MATN3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22105-3", "protein_name": "Tenascin-X", "gene_name": "TNXB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13591-2", "protein_name": "Neural cell adhesion molecule 1", "gene_name": "NCAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13316-1", "protein_name": "Dentin matrix acidic phosphoprotein 1", "gene_name": "DMP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55268-1", "protein_name": "Laminin subunit beta-2", "gene_name": "LAMB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24821-1", "protein_name": "Tenascin", "gene_name": "TNC", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14594-1", "protein_name": "Neurocan core protein", "gene_name": "NCAN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05067-1", "protein_name": "Amyloid-beta precursor protein", "gene_name": "APP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01137-1", "protein_name": "Transforming growth factor beta-1 proprotein", "gene_name": "TGFB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61812-1", "protein_name": "Transforming growth factor beta-2 proprotein", "gene_name": "TGFB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05121-1", "protein_name": "Plasminogen activator inhibitor 1", "gene_name": "SERPINE1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P98160", "url": "https://www.uniprot.org/uniprotkb/P98160" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.16293224", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 76 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Human plasma N-glycoproteome analysis by immunoaffinity subtraction, hydrazide chemistry, and mass spectrometry.", "journal": "Journal of proteome research", "date": "2005", "authors": "Liu T, Qian WJ, Gritsenko MA, Camp DG 2nd, Monroe ME, Moore RJ, Smith RD", "reference": { "type": "PubMed", "id": "16335952", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P98160-1", "protein_name": "Basement membrane-specific heparan sulfate proteoglycan core protein", "gene_name": "HSPG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14818-1", "protein_name": "Proteasome subunit alpha type-7", "gene_name": "PSMA7", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75356-1", "protein_name": "Nucleoside diphosphate phosphatase ENTPD5", "gene_name": "ENTPD5", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75023-1", "protein_name": "Leukocyte immunoglobulin-like receptor subfamily B member 5", "gene_name": "LILRB5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32004-1", "protein_name": "Neural cell adhesion molecule L1", "gene_name": "L1CAM", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5X9-1", "protein_name": "Endothelial lipase", "gene_name": "LIPG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51884-1", "protein_name": "Lumican", "gene_name": "LUM", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZVN7-1", "protein_name": "Putative protein SEM1, isoform 2", "gene_name": "SEM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49908-1", "protein_name": "Selenoprotein P", "gene_name": "SELENOP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00734-1", "protein_name": "Prothrombin", "gene_name": "F2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02671-1", "protein_name": "Fibrinogen alpha chain", "gene_name": "FGA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04180-1", "protein_name": "Phosphatidylcholine-sterol acyltransferase", "gene_name": "LCAT", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16853-1", "protein_name": "Amine oxidase [copper-containing] 3", "gene_name": "AOC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P43652-1", "protein_name": "Afamin", "gene_name": "AFM", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12841-1", "protein_name": "Follistatin-related protein 1", "gene_name": "FSTL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86SQ4-1", "protein_name": "Adhesion G protein-coupled receptor G6", "gene_name": "ADGRG6", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00231-1", "protein_name": "26S proteasome non-ATPase regulatory subunit 11", "gene_name": "PSMD11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16186-1", "protein_name": "Proteasomal ubiquitin receptor ADRM1", "gene_name": "ADRM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14791-1", "protein_name": "Apolipoprotein L1", "gene_name": "APOL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04114-1", "protein_name": "Apolipoprotein B-100", "gene_name": "APOB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02751-15", "protein_name": "Fibronectin", "gene_name": "FN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07954-1", "protein_name": "Prolow-density lipoprotein receptor-related protein 1", "gene_name": "LRP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95445-1", "protein_name": "Apolipoprotein M", "gene_name": "APOM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15144-1", "protein_name": "Aminopeptidase N", "gene_name": "ANPEP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NI99-1", "protein_name": "Angiopoietin-related protein 6", "gene_name": "ANGPTL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01008-1", "protein_name": "Antithrombin-III", "gene_name": "SERPINC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5C1-1", "protein_name": "Angiopoietin-related protein 3", "gene_name": "ANGPTL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13510-1", "protein_name": "Acid ceramidase", "gene_name": "ASAH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16144-1", "protein_name": "Integrin beta-4", "gene_name": "ITGB4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92823-1", "protein_name": "Neuronal cell adhesion molecule", "gene_name": "NRCAM", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92859-1", "protein_name": "Neogenin", "gene_name": "NEO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10646-1", "protein_name": "Tissue factor pathway inhibitor", "gene_name": "TFPI", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10909-1", "protein_name": "Clusterin", "gene_name": "CLU", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQP3-1", "protein_name": "Tenascin-N", "gene_name": "TNN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06681-1", "protein_name": "Complement C2", "gene_name": "C2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12860-1", "protein_name": "Contactin-1", "gene_name": "CNTN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02765-1", "protein_name": "Alpha-2-HS-glycoprotein", "gene_name": "AHSG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02679-1", "protein_name": "Fibrinogen gamma chain", "gene_name": "FGG", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6UX04-1", "protein_name": "Spliceosome-associated protein CWC27 homolog", "gene_name": "CWC27", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43323-1", "protein_name": "Desert hedgehog protein", "gene_name": "DHH", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62195-1", "protein_name": "26S proteasome regulatory subunit 8", "gene_name": "PSMC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07237-1", "protein_name": "Protein disulfide-isomerase", "gene_name": "P4HB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6R7-1", "protein_name": "IgGFc-binding protein", "gene_name": "FCGBP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05160-1", "protein_name": "Coagulation factor XIII B chain", "gene_name": "F13B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86TM6-1", "protein_name": "E3 ubiquitin-protein ligase synoviolin", "gene_name": "SYVN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBV2-1", "protein_name": "Protein sel-1 homolog 1", "gene_name": "SEL1L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25789-1", "protein_name": "Proteasome subunit alpha type-4", "gene_name": "PSMA4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15465-1", "protein_name": "Sonic hedgehog protein", "gene_name": "SHH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5VTY9-1", "protein_name": "Protein-cysteine N-palmitoyltransferase HHAT", "gene_name": "HHAT", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NBJ4-1", "protein_name": "Golgi membrane protein 1", "gene_name": "GOLM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05362-1", "protein_name": "Intercellular adhesion molecule 1", "gene_name": "ICAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75144-1", "protein_name": "ICOS ligand", "gene_name": "ICOSLG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18510-1", "protein_name": "Interleukin-1 receptor antagonist protein", "gene_name": "IL1RN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29622-1", "protein_name": "Kallistatin", "gene_name": "SERPINA4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15151-1", "protein_name": "Poliovirus receptor", "gene_name": "PVR", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41222-1", "protein_name": "Prostaglandin-H2 D-isomerase", "gene_name": "PTGDS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62191-1", "protein_name": "26S proteasome regulatory subunit 4", "gene_name": "PSMC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13201-1", "protein_name": "Multimerin-1", "gene_name": "MMRN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06276-1", "protein_name": "Cholinesterase", "gene_name": "BCHE", "tax_name": "Human" }, { "uniprot_canonical_ac": "P54289-1", "protein_name": "Voltage-dependent calcium channel subunit alpha-2/delta-1", "gene_name": "CACNA2D1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5QGZ9-2", "protein_name": "C-type lectin domain family 12 member A", "gene_name": "CLEC12A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07333-1", "protein_name": "Macrophage colony-stimulating factor 1 receptor", "gene_name": "CSF1R", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYJ1-1", "protein_name": "Copine-9", "gene_name": "CPNE9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P232-1", "protein_name": "Contactin-3", "gene_name": "CNTN3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40189-1", "protein_name": "Interleukin-6 receptor subunit beta", "gene_name": "IL6ST", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96KN2-1", "protein_name": "Beta-Ala-His dipeptidase", "gene_name": "CNDP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4D7-1", "protein_name": "Plexin-D1", "gene_name": "PLXND1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P28827-1", "protein_name": "Receptor-type tyrosine-protein phosphatase mu", "gene_name": "PTPRM", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBM4-1", "protein_name": "Opticin", "gene_name": "OPTC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49720-1", "protein_name": "Proteasome subunit beta type-3", "gene_name": "PSMB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99460-1", "protein_name": "26S proteasome non-ATPase regulatory subunit 1", "gene_name": "PSMD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNM6-1", "protein_name": "26S proteasome non-ATPase regulatory subunit 13", "gene_name": "PSMD13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02743-1", "protein_name": "Serum amyloid P-component", "gene_name": "APCS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51665-1", "protein_name": "26S proteasome non-ATPase regulatory subunit 7", "gene_name": "PSMD7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08603-1", "protein_name": "Complement factor H", "gene_name": "CFH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6EMK4-1", "protein_name": "Vasorin", "gene_name": "VASN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16112-1", "protein_name": "Aggrecan core protein", "gene_name": "ACAN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10253-1", "protein_name": "Lysosomal alpha-glucosidase", "gene_name": "GAA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFP4-1", "protein_name": "MAM domain-containing glycosylphosphatidylinositol anchor protein 1", "gene_name": "MDGA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00533-1", "protein_name": "Neural cell adhesion molecule L1-like protein", "gene_name": "CHL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H8L6-1", "protein_name": "Multimerin-2", "gene_name": "MMRN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96PD5-1", "protein_name": "N-acetylmuramoyl-L-alanine amidase", "gene_name": "PGLYRP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16620-1", "protein_name": "BDNF/NT-3 growth factors receptor", "gene_name": "NTRK2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6UXH9-1", "protein_name": "Inactive serine protease PAMR1", "gene_name": "PAMR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P80108-1", "protein_name": "Phosphatidylinositol-glycan-specific phospholipase D", "gene_name": "GPLD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P28074-1", "protein_name": "Proteasome subunit beta type-5", "gene_name": "PSMB5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35998-1", "protein_name": "26S proteasome regulatory subunit 7", "gene_name": "PSMC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15166-1", "protein_name": "Serum paraoxonase/lactonase 3", "gene_name": "PON3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P43686-1", "protein_name": "26S proteasome regulatory subunit 6B", "gene_name": "PSMC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99436-1", "protein_name": "Proteasome subunit beta type-7", "gene_name": "PSMB7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPR2-1", "protein_name": "Semaphorin-4B", "gene_name": "SEMA4B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WZ75-1", "protein_name": "Roundabout homolog 4", "gene_name": "ROBO4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35542-1", "protein_name": "Serum amyloid A-4 protein", "gene_name": "SAA4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08294-1", "protein_name": "Extracellular superoxide dismutase [Cu-Zn]", "gene_name": "SOD3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04278-1", "protein_name": "Sex hormone-binding globulin", "gene_name": "SHBG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05156-1", "protein_name": "Complement factor I", "gene_name": "CFI", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01033-1", "protein_name": "Metalloproteinase inhibitor 1", "gene_name": "TIMP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H4A9-1", "protein_name": "Dipeptidase 2", "gene_name": "DPEP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09172-1", "protein_name": "Dopamine beta-hydroxylase", "gene_name": "DBH", "tax_name": "Human" }, { "uniprot_canonical_ac": "P28068-1", "protein_name": "HLA class II histocompatibility antigen, DM beta chain", "gene_name": "HLA-DMB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99784-1", "protein_name": "Noelin", "gene_name": "OLFM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13438-1", "protein_name": "Protein OS-9", "gene_name": "OS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17936-1", "protein_name": "Insulin-like growth factor-binding protein 3", "gene_name": "IGFBP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13200-1", "protein_name": "26S proteasome non-ATPase regulatory subunit 2", "gene_name": "PSMD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07307-1", "protein_name": "Asialoglycoprotein receptor 2", "gene_name": "ASGR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q76LX8-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 13", "gene_name": "ADAMTS13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HD20-1", "protein_name": "Endoplasmic reticulum transmembrane helix translocase", "gene_name": "ATP13A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75882-1", "protein_name": "Attractin", "gene_name": "ATRN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86VB7-1", "protein_name": "Scavenger receptor cysteine-rich type 1 protein M130", "gene_name": "CD163", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62333-1", "protein_name": "26S proteasome regulatory subunit 10B", "gene_name": "PSMC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00736-1", "protein_name": "Complement C1r subcomponent", "gene_name": "C1R", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09871-1", "protein_name": "Complement C1s subcomponent", "gene_name": "C1S", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NY97-1", "protein_name": "N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 2", "gene_name": "B3GNT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04003-1", "protein_name": "C4b-binding protein alpha chain", "gene_name": "C4BPA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20851-1", "protein_name": "C4b-binding protein beta chain", "gene_name": "C4BPB", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75493-1", "protein_name": "Carbonic anhydrase-related protein 11", "gene_name": "CA11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07711-1", "protein_name": "Procathepsin L", "gene_name": "CTSL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13688-1", "protein_name": "Cell adhesion molecule CEACAM1", "gene_name": "CEACAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07996-1", "protein_name": "Thrombospondin-1", "gene_name": "THBS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16070-1", "protein_name": "CD44 antigen", "gene_name": "CD44", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96IY4-1", "protein_name": "Carboxypeptidase B2", "gene_name": "CPB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43242-1", "protein_name": "26S proteasome non-ATPase regulatory subunit 3", "gene_name": "PSMD3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08185-1", "protein_name": "Corticosteroid-binding globulin", "gene_name": "SERPINA6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y646-1", "protein_name": "Carboxypeptidase Q", "gene_name": "CPQ", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00450-1", "protein_name": "Ceruloplasmin", "gene_name": "CP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11597-1", "protein_name": "Cholesteryl ester transfer protein", "gene_name": "CETP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02766-1", "protein_name": "Transthyretin", "gene_name": "TTR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HBB8-1", "protein_name": "Cadherin-related family member 5", "gene_name": "CDHR5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NS84-1", "protein_name": "Carbohydrate sulfotransferase 7", "gene_name": "CHST7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23471-1", "protein_name": "Receptor-type tyrosine-protein phosphatase zeta", "gene_name": "PTPRZ1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02246-1", "protein_name": "Contactin-2", "gene_name": "CNTN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55290-1", "protein_name": "Cadherin-13", "gene_name": "CDH13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWV2-1", "protein_name": "Contactin-4", "gene_name": "CNTN4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0C0L4-1", "protein_name": "Complement C4-A", "gene_name": "C4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13671-1", "protein_name": "Complement component C6", "gene_name": "C6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01031-1", "protein_name": "Complement C5", "gene_name": "C5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02748-1", "protein_name": "Complement component C9", "gene_name": "C9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07357-1", "protein_name": "Complement component C8 alpha chain", "gene_name": "C8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23470-1", "protein_name": "Receptor-type tyrosine-protein phosphatase gamma", "gene_name": "PTPRG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P03952-1", "protein_name": "Plasma kallikrein", "gene_name": "KLKB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07942-1", "protein_name": "Laminin subunit beta-1", "gene_name": "LAMB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24043-1", "protein_name": "Laminin subunit alpha-2", "gene_name": "LAMA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5Y7-1", "protein_name": "Lymphatic vessel endothelial hyaluronic acid receptor 1", "gene_name": "LYVE1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06315-1", "protein_name": "Immunoglobulin kappa variable 5-2", "gene_name": "IGKV5-2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11279-1", "protein_name": "Lysosome-associated membrane glycoprotein 1", "gene_name": "LAMP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11047-1", "protein_name": "Laminin subunit gamma-1", "gene_name": "LAMC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99677-1", "protein_name": "Lysophosphatidic acid receptor 4", "gene_name": "LPAR4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19823-1", "protein_name": "Inter-alpha-trypsin inhibitor heavy chain H2", "gene_name": "ITIH2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05154-1", "protein_name": "Plasma serine protease inhibitor", "gene_name": "SERPINA5", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60938-1", "protein_name": "Keratocan", "gene_name": "KERA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49721-1", "protein_name": "Proteasome subunit beta type-2", "gene_name": "PSMB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20618-1", "protein_name": "Proteasome subunit beta type-1", "gene_name": "PSMB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01833-1", "protein_name": "Polymeric immunoglobulin receptor", "gene_name": "PIGR", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27169-1", "protein_name": "Serum paraoxonase/arylesterase 1", "gene_name": "PON1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00241-1", "protein_name": "Signal-regulatory protein beta-1", "gene_name": "SIRPB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15063-1", "protein_name": "Periostin", "gene_name": "POSTN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05155-1", "protein_name": "Plasma protease C1 inhibitor", "gene_name": "SERPING1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22792-1", "protein_name": "Carboxypeptidase N subunit 2", "gene_name": "CPN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75636-1", "protein_name": "Ficolin-3", "gene_name": "FCN3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P28070-1", "protein_name": "Proteasome subunit beta type-4", "gene_name": "PSMB4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08380-1", "protein_name": "Galectin-3-binding protein", "gene_name": "LGALS3BP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08514-1", "protein_name": "Integrin alpha-IIb", "gene_name": "ITGA2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01860-2", "protein_name": "Immunoglobulin heavy constant gamma 3", "gene_name": "IGHG3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01880-2", "protein_name": "Immunoglobulin heavy constant delta", "gene_name": "IGHD", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13473-1", "protein_name": "Lysosome-associated membrane glycoprotein 2", "gene_name": "LAMP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P48740-1", "protein_name": "Mannan-binding lectin serine protease 1", "gene_name": "MASP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UEW3-1", "protein_name": "Macrophage receptor MARCO", "gene_name": "MARCO", "tax_name": "Human" }, { "uniprot_canonical_ac": "P03951-1", "protein_name": "Coagulation factor XI", "gene_name": "F11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00451-1", "protein_name": "Coagulation factor VIII", "gene_name": "F8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19652-1", "protein_name": "Alpha-1-acid glycoprotein 2", "gene_name": "ORM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01019-1", "protein_name": "Angiotensinogen", "gene_name": "AGT", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11362-1", "protein_name": "Fibroblast growth factor receptor 1", "gene_name": "FGFR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HBW9-1", "protein_name": "Adhesion G protein-coupled receptor L4", "gene_name": "ADGRL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02750-1", "protein_name": "Leucine-rich alpha-2-glycoprotein", "gene_name": "LRG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IZF2-1", "protein_name": "Adhesion G protein-coupled receptor F5", "gene_name": "ADGRF5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08195-2", "protein_name": "Amino acid transporter heavy chain SLC3A2", "gene_name": "SLC3A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55072-1", "protein_name": "Transitional endoplasmic reticulum ATPase", "gene_name": "VCP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25786-1", "protein_name": "Proteasome subunit alpha type-1", "gene_name": "PSMA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05090-1", "protein_name": "Apolipoprotein D", "gene_name": "APOD", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17980-1", "protein_name": "26S proteasome regulatory subunit 6A", "gene_name": "PSMC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HDC9-1", "protein_name": "Adipocyte plasma membrane-associated protein", "gene_name": "APMAP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02749-1", "protein_name": "Beta-2-glycoprotein 1", "gene_name": "APOH", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55056-1", "protein_name": "Apolipoprotein C-IV", "gene_name": "APOC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35858-1", "protein_name": "Insulin-like growth factor-binding protein complex acid labile subunit", "gene_name": "IGFALS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01130-1", "protein_name": "Low-density lipoprotein receptor", "gene_name": "LDLR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07075-1", "protein_name": "Glutamyl aminopeptidase", "gene_name": "ENPEP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02786-1", "protein_name": "Transferrin receptor protein 1", "gene_name": "TFRC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05556-1", "protein_name": "Integrin beta-1", "gene_name": "ITGB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00738-1", "protein_name": "Haptoglobin", "gene_name": "HP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25788-1", "protein_name": "Proteasome subunit alpha type-3", "gene_name": "PSMA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5VTT2-1", "protein_name": "Cilia- and flagella-associated protein 95", "gene_name": "CFAP95", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12111-1", "protein_name": "Collagen alpha-3(VI) chain", "gene_name": "COL6A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10643-1", "protein_name": "Complement component C7", "gene_name": "C7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07358-1", "protein_name": "Complement component C8 beta chain", "gene_name": "C8B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04070-1", "protein_name": "Vitamin K-dependent protein C", "gene_name": "PROC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UGM5-1", "protein_name": "Fetuin-B", "gene_name": "FETUB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12913-1", "protein_name": "Receptor-type tyrosine-protein phosphatase eta", "gene_name": "PTPRJ", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36955-1", "protein_name": "Pigment epithelium-derived factor", "gene_name": "SERPINF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14786-1", "protein_name": "Neuropilin-1", "gene_name": "NRP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02675-1", "protein_name": "Fibrinogen beta chain", "gene_name": "FGB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6UVK1-1", "protein_name": "Chondroitin sulfate proteoglycan 4", "gene_name": "CSPG4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12259-1", "protein_name": "Coagulation factor V", "gene_name": "F5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05106-1", "protein_name": "Integrin beta-3", "gene_name": "ITGB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96DZ1-1", "protein_name": "Endoplasmic reticulum lectin 1", "gene_name": "ERLEC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5SZK8-1", "protein_name": "FRAS1-related extracellular matrix protein 2", "gene_name": "FREM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02787-1", "protein_name": "Serotransferrin", "gene_name": "TF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36537-1", "protein_name": "UDP-glucuronosyltransferase 2B10", "gene_name": "UGT2B10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UK55-1", "protein_name": "Protein Z-dependent protease inhibitor", "gene_name": "SERPINA10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08236-1", "protein_name": "Beta-glucuronidase", "gene_name": "GUSB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6UY14-1", "protein_name": "ADAMTS-like protein 4", "gene_name": "ADAMTSL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60900-1", "protein_name": "Proteasome subunit alpha type-6", "gene_name": "PSMA6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33151-1", "protein_name": "Cadherin-5", "gene_name": "CDH5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01042-1", "protein_name": "Kininogen-1", "gene_name": "KNG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BY67-1", "protein_name": "Cell adhesion molecule 1", "gene_name": "CADM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NZP8-1", "protein_name": "Complement C1r subcomponent-like protein", "gene_name": "C1RL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02745-1", "protein_name": "Complement C1q subcomponent subunit A", "gene_name": "C1QA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P43251-4", "protein_name": "Biotinidase", "gene_name": "BTD", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04004-1", "protein_name": "Vitronectin", "gene_name": "VTN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55285-1", "protein_name": "Cadherin-6", "gene_name": "CDH6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00748-1", "protein_name": "Coagulation factor XII", "gene_name": "F12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9GZP9-1", "protein_name": "Derlin-2", "gene_name": "DERL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14126-1", "protein_name": "Desmoglein-2", "gene_name": "DSG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16610-1", "protein_name": "Extracellular matrix protein 1", "gene_name": "ECM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14515-1", "protein_name": "SPARC-like protein 1", "gene_name": "SPARCL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNW1-1", "protein_name": "Multiple inositol polyphosphate phosphatase 1", "gene_name": "MINPP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P48357-1", "protein_name": "Leptin receptor", "gene_name": "LEPR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4L1-1", "protein_name": "Hypoxia up-regulated protein 1", "gene_name": "HYOU1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32942-1", "protein_name": "Intercellular adhesion molecule 3", "gene_name": "ICAM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05164-1", "protein_name": "Myeloperoxidase", "gene_name": "MPO", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55058-1", "protein_name": "Phospholipid transfer protein", "gene_name": "PLTP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07225-1", "protein_name": "Vitamin K-dependent protein S", "gene_name": "PROS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P48556-1", "protein_name": "26S proteasome non-ATPase regulatory subunit 8", "gene_name": "PSMD8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15008-1", "protein_name": "26S proteasome non-ATPase regulatory subunit 6", "gene_name": "PSMD6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P28072-1", "protein_name": "Proteasome subunit beta type-6", "gene_name": "PSMB6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20742-1", "protein_name": "Pregnancy zone protein", "gene_name": "PZP", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00232-1", "protein_name": "26S proteasome non-ATPase regulatory subunit 12", "gene_name": "PSMD12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6UX71-1", "protein_name": "Plexin domain-containing protein 2", "gene_name": "PLXDC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25787-1", "protein_name": "Proteasome subunit alpha type-2", "gene_name": "PSMA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P28066-1", "protein_name": "Proteasome subunit alpha type-5", "gene_name": "PSMA5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35916-2", "protein_name": "Vascular endothelial growth factor receptor 3", "gene_name": "FLT4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q04756-1", "protein_name": "Hepatocyte growth factor activator serine protease", "gene_name": "HGFAC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02790-1", "protein_name": "Hemopexin", "gene_name": "HPX", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q4G148-1", "protein_name": "Glucoside xylosyltransferase 1", "gene_name": "GXYLT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04196-1", "protein_name": "Histidine-rich glycoprotein", "gene_name": "HRG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05546-1", "protein_name": "Heparin cofactor 2", "gene_name": "SERPIND1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13332-1", "protein_name": "Receptor-type tyrosine-protein phosphatase S", "gene_name": "PTPRS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10586-1", "protein_name": "Receptor-type tyrosine-protein phosphatase F", "gene_name": "PTPRF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92954-1", "protein_name": "Proteoglycan 4", "gene_name": "PRG4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01591-1", "protein_name": "Immunoglobulin J chain", "gene_name": "JCHAIN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57087-1", "protein_name": "Junctional adhesion molecule B", "gene_name": "JAM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHG3-1", "protein_name": "Prenylcysteine oxidase 1", "gene_name": "PCYOX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00391-1", "protein_name": "Sulfhydryl oxidase 1", "gene_name": "QSOX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14624-1", "protein_name": "Inter-alpha-trypsin inhibitor heavy chain H4", "gene_name": "ITIH4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14623-1", "protein_name": "Indian hedgehog protein", "gene_name": "IHH", "tax_name": "Human" }, { "uniprot_canonical_ac": "P56199-1", "protein_name": "Integrin alpha-1", "gene_name": "ITGA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UGT4-1", "protein_name": "Sushi domain-containing protein 2", "gene_name": "SUSD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NYV8-1", "protein_name": "Taste receptor type 2 member 14", "gene_name": "TAS2R14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22105-3", "protein_name": "Tenascin-X", "gene_name": "TNXB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13591-2", "protein_name": "Neural cell adhesion molecule 1", "gene_name": "NCAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P80188-1", "protein_name": "Neutrophil gelatinase-associated lipocalin", "gene_name": "LCN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25311-1", "protein_name": "Zinc-alpha-2-glycoprotein", "gene_name": "AZGP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78324-1", "protein_name": "Tyrosine-protein phosphatase non-receptor type substrate 1", "gene_name": "SIRPA", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95498-1", "protein_name": "Pantetheine hydrolase VNN2", "gene_name": "VNN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19320-1", "protein_name": "Vascular cell adhesion protein 1", "gene_name": "VCAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95497-1", "protein_name": "Pantetheinase", "gene_name": "VNN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q10588-1", "protein_name": "ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 2", "gene_name": "BST1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z7M0-1", "protein_name": "Multiple epidermal growth factor-like domains protein 8", "gene_name": "MEGF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50895-1", "protein_name": "Basal cell adhesion molecule", "gene_name": "BCAM", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13740-1", "protein_name": "CD166 antigen", "gene_name": "ALCAM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27487-1", "protein_name": "Dipeptidyl peptidase 4", "gene_name": "DPP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG47-1", "protein_name": "Polyubiquitin-B", "gene_name": "UBB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01024-1", "protein_name": "Complement C3", "gene_name": "C3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08571-1", "protein_name": "Monocyte differentiation antigen CD14", "gene_name": "CD14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00751-1", "protein_name": "Complement factor B", "gene_name": "CFB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6YHK3-1", "protein_name": "CD109 antigen", "gene_name": "CD109", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00487-1", "protein_name": "Ubiquitin C-terminal hydrolase PSMD14", "gene_name": "PSMD14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02487-1", "protein_name": "Desmocollin-2", "gene_name": "DSC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NYQ8-1", "protein_name": "Protocadherin Fat 2", "gene_name": "FAT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12884-1", "protein_name": "Prolyl endopeptidase FAP", "gene_name": "FAP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q06033-1", "protein_name": "Inter-alpha-trypsin inhibitor heavy chain H3", "gene_name": "ITIH3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13598-1", "protein_name": "Intercellular adhesion molecule 2", "gene_name": "ICAM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9ULI3-1", "protein_name": "Protein HEG homolog 1", "gene_name": "HEG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26927-1", "protein_name": "Hepatocyte growth factor-like protein", "gene_name": "MST1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27918-1", "protein_name": "Properdin", "gene_name": "CFP", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43157-1", "protein_name": "Plexin-B1", "gene_name": "PLXNB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14151-1", "protein_name": "L-selectin", "gene_name": "SELL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16706-1", "protein_name": "Alpha-mannosidase 2", "gene_name": "MAN2A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55083-1", "protein_name": "Microfibril-associated glycoprotein 4", "gene_name": "MFAP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12866-1", "protein_name": "Tyrosine-protein kinase Mer", "gene_name": "MERTK", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24821-1", "protein_name": "Tenascin", "gene_name": "TNC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15223-1", "protein_name": "Nectin-1", "gene_name": "NECTIN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05543-1", "protein_name": "Thyroxine-binding globulin", "gene_name": "SERPINA7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20061-1", "protein_name": "Transcobalamin-1", "gene_name": "TCN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P179-1", "protein_name": "Endoplasmic reticulum aminopeptidase 2", "gene_name": "ERAP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00488-1", "protein_name": "Coagulation factor XIII A chain", "gene_name": "F13A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q03591-1", "protein_name": "Complement factor H-related protein 1", "gene_name": "CFHR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14314-1", "protein_name": "Fibroleukin", "gene_name": "FGL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05067-1", "protein_name": "Amyloid-beta precursor protein", "gene_name": "APP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01137-1", "protein_name": "Transforming growth factor beta-1 proprotein", "gene_name": "TGFB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07339-1", "protein_name": "Cathepsin D", "gene_name": "CTSD", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01023-1", "protein_name": "Alpha-2-macroglobulin", "gene_name": "A2M", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04217-1", "protein_name": "Alpha-1B-glycoprotein", "gene_name": "A1BG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10721-1", "protein_name": "Mast/stem cell growth factor receptor Kit", "gene_name": "KIT", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12821-1", "protein_name": "Angiotensin-converting enzyme", "gene_name": "ACE", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01011-1", "protein_name": "Alpha-1-antichymotrypsin", "gene_name": "SERPINA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08697-1", "protein_name": "Alpha-2-antiplasmin", "gene_name": "SERPINF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG48-1", "protein_name": "Polyubiquitin-C", "gene_name": "UBC", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15204-1", "protein_name": "ADAM DEC1", "gene_name": "ADAMDEC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02763-1", "protein_name": "Alpha-1-acid glycoprotein 1", "gene_name": "ORM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01009-1", "protein_name": "Alpha-1-antitrypsin", "gene_name": "SERPINA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05107-1", "protein_name": "Integrin beta-2", "gene_name": "ITGB2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P98160", "url": "https://www.uniprot.org/uniprotkb/P98160" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 1755, "start_aa": "Asn", "end_pos": 1755, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn1755", "evidence": [ { "id": "P98160", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P98160#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P98160-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 232, "start_aa": "Asn", "end_pos": 232, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn232", "evidence": [ { "id": "O75356", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O75356#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "O75356-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 279, "start_aa": "Asn", "end_pos": 279, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn279", "evidence": [ { "id": "O75023", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O75023#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "O75023-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 671, "start_aa": "Asn", "end_pos": 671, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn671", "evidence": [ { "id": "P32004", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P32004#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P32004-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 393, "start_aa": "Asn", "end_pos": 393, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn393", "evidence": [ { "id": "Q9Y5X9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9Y5X9#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "Q9Y5X9-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) (keratan sulfate) asparagine", "icn3d_view": {}, "start_pos": 160, "start_aa": "Asn", "end_pos": 160, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn160", "evidence": [ { "id": "P51884", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P51884#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "14760718", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/14760718" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "P51884-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) (keratan sulfate) asparagine", "icn3d_view": {}, "start_pos": 88, "start_aa": "Asn", "end_pos": 88, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn88", "evidence": [ { "id": "P51884", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P51884#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "14760718", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/14760718" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "P51884-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 119, "start_aa": "Asn", "end_pos": 119, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn119", "evidence": [ { "id": "P49908", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P49908#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P49908-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 128, "start_aa": "Asn", "end_pos": 128, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn128", "evidence": [ { "id": "P49908", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P49908#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P49908-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "Complex", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) (complex) asparagine;Complex", "icn3d_view": {}, "start_pos": 83, "start_aa": "Asn", "end_pos": 83, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn83", "evidence": [ { "id": "P49908", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P49908#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "19139490", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19139490" } ], "filter_code": "001000000000000000000.10000000000000.00.01001", "uniprot_canonical_ac": "P49908-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "Complex", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) (complex) asparagine;Complex", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=4HZH&bu=0&command=select+.B:78;+center+selection;+zoom+selection" }, "start_pos": 121, "start_aa": "Asn", "end_pos": 121, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn121", "evidence": [ { "id": "E9PIT3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/E9PIT3#ptm_processing" }, { "id": "PIRSR001149-3", "database": "PIR Site Rule", "url": "https://www.uniprot.org/unirule/PIRSR001149-3" }, { "id": "P00734", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P00734#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "14760718", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/14760718" }, { "id": "22171320", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/22171320" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "4HZH", "database": "PDB", "url": "https://www.rcsb.org/structure/4HZH" }, { "id": "4O03", "database": "PDB", "url": "https://www.rcsb.org/structure/4O03" }, { "id": "4NZQ", "database": "PDB", "url": "https://www.rcsb.org/structure/4NZQ" }, { "id": "5EDM", "database": "PDB", "url": "https://www.rcsb.org/structure/5EDM" }, { "id": "9CTH", "database": "PDB", "url": "https://www.rcsb.org/structure/9CTH" } ], "filter_code": "001000000000000000000.10000000000000.00.01000", "uniprot_canonical_ac": "P00734-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "Complex", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) (complex) asparagine;Complex", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=4HZH&bu=0&command=select+.B:100;+center+selection;+zoom+selection" }, "start_pos": 143, "start_aa": "Asn", "end_pos": 143, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn143", "evidence": [ { "id": "P00734", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P00734#ptm_processing" }, { "id": "14760718", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/14760718" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "22171320", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/22171320" }, { "id": "E9PIT3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/E9PIT3#ptm_processing" }, { "id": "PIRSR001149-3", "database": "PIR Site Rule", "url": "https://www.uniprot.org/unirule/PIRSR001149-3" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "4HZH", "database": "PDB", "url": "https://www.rcsb.org/structure/4HZH" }, { "id": "4O03", "database": "PDB", "url": "https://www.rcsb.org/structure/4O03" }, { "id": "4NZQ", "database": "PDB", "url": "https://www.rcsb.org/structure/4NZQ" }, { "id": "5EDK", "database": "PDB", "url": "https://www.rcsb.org/structure/5EDK" } ], "filter_code": "001000000000000000000.10000000000000.00.01000", "uniprot_canonical_ac": "P00734-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=1AE8&bu=0&command=select+.H:60;+center+selection;+zoom+selection" }, "start_pos": 416, "start_aa": "Asn", "end_pos": 416, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn416", "evidence": [ { "id": "29741879", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/29741879" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "P00734", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P00734#ptm_processing" }, { "id": "19838169", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19838169" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "19139490", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19139490" }, { "id": "873923", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/873923" }, { "id": "E9PIT3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/E9PIT3#ptm_processing" }, { "id": "PIRSR001149-3", "database": "PIR Site Rule", "url": "https://www.uniprot.org/unirule/PIRSR001149-3" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "1AE8", "database": "PDB", "url": "https://www.rcsb.org/structure/1AE8" }, { "id": "1AFE", "database": "PDB", "url": "https://www.rcsb.org/structure/1AFE" }, { "id": "1BA8", "database": "PDB", "url": "https://www.rcsb.org/structure/1BA8" }, { "id": "1D3D", "database": "PDB", "url": "https://www.rcsb.org/structure/1D3D" }, { "id": "1D3P", "database": "PDB", "url": "https://www.rcsb.org/structure/1D3P" }, { "id": "1D3Q", "database": "PDB", "url": "https://www.rcsb.org/structure/1D3Q" }, { "id": "1D3T", "database": "PDB", "url": "https://www.rcsb.org/structure/1D3T" }, { "id": "1D4P", "database": "PDB", "url": "https://www.rcsb.org/structure/1D4P" }, { "id": "1DOJ", "database": "PDB", "url": "https://www.rcsb.org/structure/1DOJ" }, { "id": "1DX5", "database": "PDB", "url": "https://www.rcsb.org/structure/1DX5" }, { "id": "1HAG", "database": "PDB", "url": "https://www.rcsb.org/structure/1HAG" }, { "id": "1HAH", "database": "PDB", "url": "https://www.rcsb.org/structure/1HAH" }, { "id": "1HAI", "database": "PDB", "url": "https://www.rcsb.org/structure/1HAI" }, { "id": "1JOU", "database": "PDB", "url": "https://www.rcsb.org/structure/1JOU" }, { "id": "1NO9", "database": "PDB", "url": "https://www.rcsb.org/structure/1NO9" }, { "id": "1P8V", "database": "PDB", "url": "https://www.rcsb.org/structure/1P8V" }, { "id": "1RIW", "database": "PDB", "url": "https://www.rcsb.org/structure/1RIW" }, { "id": "1SFQ", "database": "PDB", "url": "https://www.rcsb.org/structure/1SFQ" }, { "id": "1SGI", "database": "PDB", "url": "https://www.rcsb.org/structure/1SGI" }, { "id": "1SHH", "database": "PDB", "url": "https://www.rcsb.org/structure/1SHH" }, { "id": "1SG8", "database": "PDB", "url": "https://www.rcsb.org/structure/1SG8" }, { "id": "1TMT", "database": "PDB", "url": "https://www.rcsb.org/structure/1TMT" }, { "id": "1TMU", "database": "PDB", "url": "https://www.rcsb.org/structure/1TMU" }, { "id": "1TQ7", "database": "PDB", "url": "https://www.rcsb.org/structure/1TQ7" }, { "id": "1UMA", "database": "PDB", "url": "https://www.rcsb.org/structure/1UMA" }, { "id": "1Z8I", "database": "PDB", "url": "https://www.rcsb.org/structure/1Z8I" }, { "id": "1Z8J", "database": "PDB", "url": "https://www.rcsb.org/structure/1Z8J" }, { "id": "2HWL", "database": "PDB", "url": "https://www.rcsb.org/structure/2HWL" }, { "id": "2PGQ", "database": "PDB", "url": "https://www.rcsb.org/structure/2PGQ" }, { "id": "3BEF", "database": "PDB", "url": "https://www.rcsb.org/structure/3BEF" }, { "id": "3BEI", "database": "PDB", "url": "https://www.rcsb.org/structure/3BEI" }, { "id": "3BIU", "database": "PDB", "url": "https://www.rcsb.org/structure/3BIU" }, { "id": "3BIV", "database": "PDB", "url": "https://www.rcsb.org/structure/3BIV" }, { "id": "2OD3", "database": "PDB", "url": "https://www.rcsb.org/structure/2OD3" }, { "id": "3HKJ", "database": "PDB", "url": "https://www.rcsb.org/structure/3HKJ" }, { "id": "3JZ1", "database": "PDB", "url": "https://www.rcsb.org/structure/3JZ1" }, { "id": "3JZ2", "database": "PDB", "url": "https://www.rcsb.org/structure/3JZ2" }, { "id": "3LU9", "database": "PDB", "url": "https://www.rcsb.org/structure/3LU9" }, { "id": "3NXP", "database": "PDB", "url": "https://www.rcsb.org/structure/3NXP" }, { "id": "3P17", "database": "PDB", "url": "https://www.rcsb.org/structure/3P17" }, { "id": "3P6Z", "database": "PDB", "url": "https://www.rcsb.org/structure/3P6Z" }, { "id": "3P70", "database": "PDB", "url": "https://www.rcsb.org/structure/3P70" }, { "id": "3QLP", "database": "PDB", "url": "https://www.rcsb.org/structure/3QLP" }, { "id": "3QTO", "database": "PDB", "url": "https://www.rcsb.org/structure/3QTO" }, { "id": "3QTV", "database": "PDB", "url": "https://www.rcsb.org/structure/3QTV" }, { "id": "3QWC", "database": "PDB", "url": "https://www.rcsb.org/structure/3QWC" }, { "id": "3QX5", "database": "PDB", "url": "https://www.rcsb.org/structure/3QX5" }, { "id": "3R3G", "database": "PDB", "url": "https://www.rcsb.org/structure/3R3G" }, { "id": "3RLW", "database": "PDB", "url": "https://www.rcsb.org/structure/3RLW" }, { "id": "3RLY", "database": "PDB", "url": "https://www.rcsb.org/structure/3RLY" }, { "id": "3RM0", "database": "PDB", "url": "https://www.rcsb.org/structure/3RM0" }, { "id": "3RM2", "database": "PDB", "url": "https://www.rcsb.org/structure/3RM2" }, { "id": "3RML", "database": "PDB", "url": "https://www.rcsb.org/structure/3RML" }, { "id": "3RMM", "database": "PDB", "url": "https://www.rcsb.org/structure/3RMM" }, { "id": "3RMN", "database": "PDB", "url": "https://www.rcsb.org/structure/3RMN" }, { "id": "3RMO", "database": "PDB", "url": "https://www.rcsb.org/structure/3RMO" }, { "id": "3S7H", "database": "PDB", "url": "https://www.rcsb.org/structure/3S7H" }, { "id": "3SHA", "database": "PDB", "url": "https://www.rcsb.org/structure/3SHA" }, { "id": "3SHC", "database": "PDB", "url": "https://www.rcsb.org/structure/3SHC" }, { "id": "3SI3", "database": "PDB", "url": "https://www.rcsb.org/structure/3SI3" }, { "id": "3SI4", "database": "PDB", "url": "https://www.rcsb.org/structure/3SI4" }, { "id": "3SV2", "database": "PDB", "url": "https://www.rcsb.org/structure/3SV2" }, { "id": "3T5F", "database": "PDB", "url": "https://www.rcsb.org/structure/3T5F" }, { "id": "3U69", "database": "PDB", "url": "https://www.rcsb.org/structure/3U69" }, { "id": "3U8O", "database": "PDB", "url": "https://www.rcsb.org/structure/3U8O" }, { "id": "3U8R", "database": "PDB", "url": "https://www.rcsb.org/structure/3U8R" }, { "id": "3U8T", "database": "PDB", "url": "https://www.rcsb.org/structure/3U8T" }, { "id": "3U98", "database": "PDB", "url": "https://www.rcsb.org/structure/3U98" }, { "id": "3U9A", "database": "PDB", "url": "https://www.rcsb.org/structure/3U9A" }, { "id": "3UWJ", "database": "PDB", "url": "https://www.rcsb.org/structure/3UWJ" }, { "id": "3VXE", "database": "PDB", "url": "https://www.rcsb.org/structure/3VXE" }, { "id": "3VXF", "database": "PDB", "url": "https://www.rcsb.org/structure/3VXF" }, { "id": "4AX9", "database": "PDB", "url": "https://www.rcsb.org/structure/4AX9" }, { "id": "4AYV", "database": "PDB", "url": "https://www.rcsb.org/structure/4AYV" }, { "id": "4AYY", "database": "PDB", "url": "https://www.rcsb.org/structure/4AYY" }, { "id": "4AZ2", "database": "PDB", "url": "https://www.rcsb.org/structure/4AZ2" }, { "id": "4BAH", "database": "PDB", "url": "https://www.rcsb.org/structure/4BAH" }, { "id": "4BAK", "database": "PDB", "url": "https://www.rcsb.org/structure/4BAK" }, { "id": "4BAM", "database": "PDB", "url": "https://www.rcsb.org/structure/4BAM" }, { "id": "4BAN", "database": "PDB", "url": "https://www.rcsb.org/structure/4BAN" }, { "id": "4BAQ", "database": "PDB", "url": "https://www.rcsb.org/structure/4BAQ" }, { "id": "4BOH", "database": "PDB", "url": "https://www.rcsb.org/structure/4BOH" }, { "id": "4DIH", "database": "PDB", "url": "https://www.rcsb.org/structure/4DIH" }, { "id": "4DII", "database": "PDB", "url": "https://www.rcsb.org/structure/4DII" }, { "id": "4E05", "database": "PDB", "url": "https://www.rcsb.org/structure/4E05" }, { "id": "4E06", "database": "PDB", "url": "https://www.rcsb.org/structure/4E06" }, { "id": "4E7R", "database": "PDB", "url": "https://www.rcsb.org/structure/4E7R" }, { "id": "3QGN", "database": "PDB", "url": "https://www.rcsb.org/structure/3QGN" }, { "id": "4HTC", "database": "PDB", "url": "https://www.rcsb.org/structure/4HTC" }, { "id": "4HZH", "database": "PDB", "url": "https://www.rcsb.org/structure/4HZH" }, { "id": "4I7Y", "database": "PDB", "url": "https://www.rcsb.org/structure/4I7Y" }, { "id": "4LOY", "database": "PDB", "url": "https://www.rcsb.org/structure/4LOY" }, { "id": "4LZ1", "database": "PDB", "url": "https://www.rcsb.org/structure/4LZ1" }, { "id": "4LZ4", "database": "PDB", "url": "https://www.rcsb.org/structure/4LZ4" }, { "id": "4MLF", "database": "PDB", "url": "https://www.rcsb.org/structure/4MLF" }, { "id": "4RKO", "database": "PDB", "url": "https://www.rcsb.org/structure/4RKO" }, { "id": "4THN", "database": "PDB", "url": "https://www.rcsb.org/structure/4THN" }, { "id": "4UD9", "database": "PDB", "url": "https://www.rcsb.org/structure/4UD9" }, { "id": "4UDW", "database": "PDB", "url": "https://www.rcsb.org/structure/4UDW" }, { "id": "4UE7", "database": "PDB", "url": "https://www.rcsb.org/structure/4UE7" }, { "id": "4UEH", "database": "PDB", "url": "https://www.rcsb.org/structure/4UEH" }, { "id": "4UFD", "database": "PDB", "url": "https://www.rcsb.org/structure/4UFD" }, { "id": "4UFE", "database": "PDB", "url": "https://www.rcsb.org/structure/4UFE" }, { "id": "4UFF", "database": "PDB", "url": "https://www.rcsb.org/structure/4UFF" }, { "id": "4UFG", "database": "PDB", "url": "https://www.rcsb.org/structure/4UFG" }, { "id": "4YES", "database": "PDB", "url": "https://www.rcsb.org/structure/4YES" }, { "id": "4LXB", "database": "PDB", "url": "https://www.rcsb.org/structure/4LXB" }, { "id": "5A2M", "database": "PDB", "url": "https://www.rcsb.org/structure/5A2M" }, { "id": "5AFY", "database": "PDB", "url": "https://www.rcsb.org/structure/5AFY" }, { "id": "5AFZ", "database": "PDB", "url": "https://www.rcsb.org/structure/5AFZ" }, { "id": "5AHG", "database": "PDB", "url": "https://www.rcsb.org/structure/5AHG" }, { "id": "5DO4", "database": "PDB", "url": "https://www.rcsb.org/structure/5DO4" }, { "id": "5GDS", "database": "PDB", "url": "https://www.rcsb.org/structure/5GDS" }, { "id": "5L6N", "database": "PDB", "url": "https://www.rcsb.org/structure/5L6N" }, { "id": "5LCE", "database": "PDB", "url": "https://www.rcsb.org/structure/5LCE" }, { "id": "5NHU", "database": "PDB", "url": "https://www.rcsb.org/structure/5NHU" }, { "id": "5TO3", "database": "PDB", "url": "https://www.rcsb.org/structure/5TO3" }, { "id": "5JFD", "database": "PDB", "url": "https://www.rcsb.org/structure/5JFD" }, { "id": "5AF9", "database": "PDB", "url": "https://www.rcsb.org/structure/5AF9" }, { "id": "6BJR", "database": "PDB", "url": "https://www.rcsb.org/structure/6BJR" }, { "id": "6C2W", "database": "PDB", "url": "https://www.rcsb.org/structure/6C2W" }, { "id": "6EO6", "database": "PDB", "url": "https://www.rcsb.org/structure/6EO6" }, { "id": "6EO7", "database": "PDB", "url": "https://www.rcsb.org/structure/6EO7" }, { "id": "6FJT", "database": "PDB", "url": "https://www.rcsb.org/structure/6FJT" }, { "id": "6HSX", "database": "PDB", "url": "https://www.rcsb.org/structure/6HSX" }, { "id": "6I51", "database": "PDB", "url": "https://www.rcsb.org/structure/6I51" }, { "id": "6CYM", "database": "PDB", "url": "https://www.rcsb.org/structure/6CYM" }, { "id": "6P9U", "database": "PDB", "url": "https://www.rcsb.org/structure/6P9U" }, { "id": "6PXQ", "database": "PDB", "url": "https://www.rcsb.org/structure/6PXQ" }, { "id": "6ROT", "database": "PDB", "url": "https://www.rcsb.org/structure/6ROT" }, { "id": "6T3M", "database": "PDB", "url": "https://www.rcsb.org/structure/6T3M" }, { "id": "6T3Q", "database": "PDB", "url": "https://www.rcsb.org/structure/6T3Q" }, { "id": "6T4A", "database": "PDB", "url": "https://www.rcsb.org/structure/6T4A" }, { "id": "6T52", "database": "PDB", "url": "https://www.rcsb.org/structure/6T52" }, { "id": "6T53", "database": "PDB", "url": "https://www.rcsb.org/structure/6T53" }, { "id": "6T54", "database": "PDB", "url": "https://www.rcsb.org/structure/6T54" }, { "id": "6T55", "database": "PDB", "url": "https://www.rcsb.org/structure/6T55" }, { "id": "6T56", "database": "PDB", "url": "https://www.rcsb.org/structure/6T56" }, { "id": "6T57", "database": "PDB", "url": "https://www.rcsb.org/structure/6T57" }, { "id": "6T7H", "database": "PDB", "url": "https://www.rcsb.org/structure/6T7H" }, { "id": "6T89", "database": "PDB", "url": "https://www.rcsb.org/structure/6T89" }, { "id": "6T8A", "database": "PDB", "url": "https://www.rcsb.org/structure/6T8A" }, { "id": "6TDT", "database": "PDB", "url": "https://www.rcsb.org/structure/6TDT" }, { "id": "6TKG", "database": "PDB", "url": "https://www.rcsb.org/structure/6TKG" }, { "id": "6TKH", "database": "PDB", "url": "https://www.rcsb.org/structure/6TKH" }, { "id": "6TKJ", "database": "PDB", "url": "https://www.rcsb.org/structure/6TKJ" }, { "id": "6TKL", "database": "PDB", "url": "https://www.rcsb.org/structure/6TKL" }, { "id": "6TKI", "database": "PDB", "url": "https://www.rcsb.org/structure/6TKI" }, { "id": "6Y02", "database": "PDB", "url": "https://www.rcsb.org/structure/6Y02" }, { "id": "6Y9H", "database": "PDB", "url": "https://www.rcsb.org/structure/6Y9H" }, { "id": "6YB6", "database": "PDB", "url": "https://www.rcsb.org/structure/6YB6" }, { "id": "6YHG", "database": "PDB", "url": "https://www.rcsb.org/structure/6YHG" }, { "id": "6YHJ", "database": "PDB", "url": "https://www.rcsb.org/structure/6YHJ" }, { "id": "6YMP", "database": "PDB", "url": "https://www.rcsb.org/structure/6YMP" }, { "id": "6YSJ", "database": "PDB", "url": "https://www.rcsb.org/structure/6YSJ" }, { "id": "6YSX", "database": "PDB", "url": "https://www.rcsb.org/structure/6YSX" }, { "id": "6ZUG", "database": "PDB", "url": "https://www.rcsb.org/structure/6ZUG" }, { "id": "6ZUH", "database": "PDB", "url": "https://www.rcsb.org/structure/6ZUH" }, { "id": "6ZUN", "database": "PDB", "url": "https://www.rcsb.org/structure/6ZUN" }, { "id": "6ZUW", "database": "PDB", "url": "https://www.rcsb.org/structure/6ZUW" }, { "id": "6ZUX", "database": "PDB", "url": "https://www.rcsb.org/structure/6ZUX" }, { "id": "6ZV7", "database": "PDB", "url": "https://www.rcsb.org/structure/6ZV7" }, { "id": "6ZV8", "database": "PDB", "url": "https://www.rcsb.org/structure/6ZV8" }, { "id": "7AC9", "database": "PDB", "url": "https://www.rcsb.org/structure/7AC9" }, { "id": "6ZUU", "database": "PDB", "url": "https://www.rcsb.org/structure/6ZUU" }, { "id": "6ZGO", "database": "PDB", "url": "https://www.rcsb.org/structure/6ZGO" }, { "id": "6YQV", "database": "PDB", "url": "https://www.rcsb.org/structure/6YQV" }, { "id": "6YN3", "database": "PDB", "url": "https://www.rcsb.org/structure/6YN3" }, { "id": "7MJ5", "database": "PDB", "url": "https://www.rcsb.org/structure/7MJ5" }, { "id": "7NTU", "database": "PDB", "url": "https://www.rcsb.org/structure/7NTU" }, { "id": "7PHX", "database": "PDB", "url": "https://www.rcsb.org/structure/7PHX" }, { "id": "7SR9", "database": "PDB", "url": "https://www.rcsb.org/structure/7SR9" }, { "id": "8ASE", "database": "PDB", "url": "https://www.rcsb.org/structure/8ASE" }, { "id": "8RTN", "database": "PDB", "url": "https://www.rcsb.org/structure/8RTN" }, { "id": "9CTH", "database": "PDB", "url": "https://www.rcsb.org/structure/9CTH" }, { "id": "9H5N", "database": "PDB", "url": "https://www.rcsb.org/structure/9H5N" }, { "id": "9H79", "database": "PDB", "url": "https://www.rcsb.org/structure/9H79" }, { "id": "9R8Q", "database": "PDB", "url": "https://www.rcsb.org/structure/9R8Q" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "P00734-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=1FZD&bu=0&command=select+.H:667;+center+selection;+zoom+selection" }, "start_pos": 686, "start_aa": "Asn", "end_pos": 686, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn686", "evidence": [ { "id": "P02671", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P02671#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "9689040", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/9689040" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "1FZD", "database": "PDB", "url": "https://www.rcsb.org/structure/1FZD" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "P02671-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "Complex", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) (complex) asparagine;Complex", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=4XWG&bu=0&command=select+.A:272;+center+selection;+zoom+selection" }, "start_pos": 296, "start_aa": "Asn", "end_pos": 296, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn296", "evidence": [ { "id": "P04180", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P04180#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "7613477", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/7613477" }, { "id": "26195816", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/26195816" }, { "id": "4X96", "database": "PDB", "url": "https://www.rcsb.org/sequence/4X96" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "4XWG", "database": "PDB", "url": "https://www.rcsb.org/structure/4XWG" }, { "id": "4XX1", "database": "PDB", "url": "https://www.rcsb.org/structure/4XX1" }, { "id": "5TXF", "database": "PDB", "url": "https://www.rcsb.org/structure/5TXF" }, { "id": "6MVD", "database": "PDB", "url": "https://www.rcsb.org/structure/6MVD" } ], "filter_code": "001000000000000000000.10000000000000.00.01000", "uniprot_canonical_ac": "P04180-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "Complex", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) (complex) asparagine;Complex", "icn3d_view": {}, "start_pos": 44, "start_aa": "Asn", "end_pos": 44, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn44", "evidence": [ { "id": "P04180", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P04180#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "7613477", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/7613477" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" } ], "filter_code": "001000000000000000000.10000000000000.00.01001", "uniprot_canonical_ac": "P04180-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "Complex", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) (complex) asparagine;Complex", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=2Y73&bu=0&command=select+.B:592;+center+selection;+zoom+selection" }, "start_pos": 592, "start_aa": "Asn", "end_pos": 592, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn592", "evidence": [ { "id": "Q16853", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q16853#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16046623", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16046623" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "4BTW", "database": "PDB", "url": "https://www.rcsb.org/sequence/4BTW" }, { "id": "4BTX", "database": "PDB", "url": "https://www.rcsb.org/sequence/4BTX" }, { "id": "4BTY", "database": "PDB", "url": "https://www.rcsb.org/sequence/4BTY" }, { "id": "19139490", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19139490" }, { "id": "24304424", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24304424" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "2Y73", "database": "PDB", "url": "https://www.rcsb.org/structure/2Y73" }, { "id": "2Y74", "database": "PDB", "url": "https://www.rcsb.org/structure/2Y74" } ], "filter_code": "001000000000000000000.10000000000000.00.01001", "uniprot_canonical_ac": "Q16853-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=4BTW&bu=0&command=select+.B:618;+center+selection;+zoom+selection" }, "start_pos": 618, "start_aa": "Asn", "end_pos": 618, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn618", "evidence": [ { "id": "Q16853", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q16853#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16046623", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16046623" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "4BTW", "database": "PDB", "url": "https://www.rcsb.org/sequence/4BTW" }, { "id": "4BTX", "database": "PDB", "url": "https://www.rcsb.org/sequence/4BTX" }, { "id": "24304424", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24304424" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "8S1Z", "database": "PDB", "url": "https://www.rcsb.org/structure/8S1Z" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "Q16853-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=2C10&bu=0&command=select+.D:666;+center+selection;+zoom+selection" }, "start_pos": 666, "start_aa": "Asn", "end_pos": 666, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn666", "evidence": [ { "id": "Q16853", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q16853#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16046623", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16046623" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "4BTW", "database": "PDB", "url": "https://www.rcsb.org/sequence/4BTW" }, { "id": "4BTX", "database": "PDB", "url": "https://www.rcsb.org/sequence/4BTX" }, { "id": "4BTY", "database": "PDB", "url": "https://www.rcsb.org/sequence/4BTY" }, { "id": "24304424", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24304424" }, { "id": "2C10", "database": "PDB", "url": "https://www.rcsb.org/structure/2C10" }, { "id": "2C11", "database": "PDB", "url": "https://www.rcsb.org/structure/2C11" }, { "id": "2Y73", "database": "PDB", "url": "https://www.rcsb.org/structure/2Y73" }, { "id": "2Y74", "database": "PDB", "url": "https://www.rcsb.org/structure/2Y74" }, { "id": "3ALA", "database": "PDB", "url": "https://www.rcsb.org/structure/3ALA" }, { "id": "8S1Z", "database": "PDB", "url": "https://www.rcsb.org/structure/8S1Z" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "Q16853-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "Complex", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) (complex) asparagine;Complex", "icn3d_view": {}, "start_pos": 33, "start_aa": "Asn", "end_pos": 33, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn33", "evidence": [ { "id": "P43652", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P43652#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "16740002", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16740002" }, { "id": "19139490", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19139490" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.10000000000000.00.01001", "uniprot_canonical_ac": "P43652-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=5OKL&bu=0&command=select+.B:381;+center+selection;+zoom+selection" }, "start_pos": 402, "start_aa": "Asn", "end_pos": 402, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn402", "evidence": [ { "id": "19838169", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19838169" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "P43652", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P43652#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "14760718", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/14760718" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "19139490", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19139490" }, { "id": "26902720", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/26902720" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "5OKL", "database": "PDB", "url": "https://www.rcsb.org/structure/5OKL" }, { "id": "6FAK", "database": "PDB", "url": "https://www.rcsb.org/structure/6FAK" }, { "id": "6RQ7", "database": "PDB", "url": "https://www.rcsb.org/structure/6RQ7" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P43652-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=6RQ7&bu=0&command=select+.B:467;+center+selection;+zoom+selection" }, "start_pos": 488, "start_aa": "Asn", "end_pos": 488, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn488", "evidence": [ { "id": "P43652", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P43652#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "26902720", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/26902720" }, { "id": "6RQ7", "database": "PDB", "url": "https://www.rcsb.org/structure/6RQ7" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "P43652-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true, "automatic_literature_mining": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 175, "start_aa": "Asn", "end_pos": 175, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn175", "evidence": [ { "id": "Q12841", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q12841#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "38768802", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/38768802" }, { "id": "GLY_000481", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000481" } ], "mining_tool": "GlycoSiteMiner_1.0", "mining_tool_list": [ { "label": "GlycoSiteMiner_1.0" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "Q12841-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true, "automatic_literature_mining": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 180, "start_aa": "Asn", "end_pos": 180, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn180", "evidence": [ { "id": "Q12841", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q12841#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "38768802", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/38768802" }, { "id": "GLY_000481", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000481" } ], "mining_tool": "GlycoSiteMiner_1.0", "mining_tool_list": [ { "label": "GlycoSiteMiner_1.0" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "Q12841-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 143, "start_aa": "Asn", "end_pos": 143, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn143", "evidence": [ { "id": "Q86SQ4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q86SQ4#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "Q86SQ4-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 438, "start_aa": "Asn", "end_pos": 438, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn438", "evidence": [ { "id": "Q86SQ4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q86SQ4#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "Q86SQ4-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 445, "start_aa": "Asn", "end_pos": 445, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn445", "evidence": [ { "id": "Q86SQ4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q86SQ4#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "Q86SQ4-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 261, "start_aa": "Asn", "end_pos": 261, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn261", "evidence": [ { "id": "O14791", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O14791#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "O14791-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 1523, "start_aa": "Asn", "end_pos": 1523, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn1523", "evidence": [ { "id": "P04114", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P04114#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "P04114-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 2982, "start_aa": "Asn", "end_pos": 2982, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn2982", "evidence": [ { "id": "P04114", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P04114#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "P04114-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=9BDE&bu=0&command=select+.A:3465;+center+selection;+zoom+selection" }, "start_pos": 3465, "start_aa": "Asn", "end_pos": 3465, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn3465", "evidence": [ { "id": "P04114", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P04114#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "9BDE", "database": "PDB", "url": "https://www.rcsb.org/structure/9BDE" }, { "id": "9BDT", "database": "PDB", "url": "https://www.rcsb.org/structure/9BDT" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "P04114-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 3895, "start_aa": "Asn", "end_pos": 3895, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn3895", "evidence": [ { "id": "P04114", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P04114#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "P04114-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true, "automatic_literature_mining": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1007, "start_aa": "Asn", "end_pos": 1007, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn1007", "evidence": [ { "id": "24279413", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24279413" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "P02751", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P02751#ptm_processing" }, { "id": "16037490", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16037490" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "19139490", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19139490" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "35484284", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/35484284" }, { "id": "GLY_000481", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000481" } ], "mining_tool": "GlycoSiteMiner_1.0", "mining_tool_list": [ { "label": "GlycoSiteMiner_1.0" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P02751-15" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 1244, "start_aa": "Asn", "end_pos": 1244, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn1244", "evidence": [ { "id": "P02751", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P02751#ptm_processing" }, { "id": "16037490", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16037490" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P02751-15" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=1E8B&bu=0&command=select+.A:126;+center+selection;+zoom+selection" }, "start_pos": 430, "start_aa": "Asn", "end_pos": 430, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn430", "evidence": [ { "id": "29741879", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/29741879" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "P02751", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P02751#ptm_processing" }, { "id": "16037490", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16037490" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "11285216", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/11285216" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "1E8B", "database": "PDB", "url": "https://www.rcsb.org/structure/1E8B" }, { "id": "1E88", "database": "PDB", "url": "https://www.rcsb.org/structure/1E88" }, { "id": "2FN2", "database": "PDB", "url": "https://www.rcsb.org/structure/2FN2" }, { "id": "3M7P", "database": "PDB", "url": "https://www.rcsb.org/structure/3M7P" }, { "id": "3MQL", "database": "PDB", "url": "https://www.rcsb.org/structure/3MQL" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P02751-15" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=3M7P&bu=0&command=select+.A:528;+center+selection;+zoom+selection" }, "start_pos": 528, "start_aa": "Asn", "end_pos": 528, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn528", "evidence": [ { "id": "29741879", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/29741879" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "24279413", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24279413" }, { "id": "P02751", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P02751#ptm_processing" }, { "id": "16037490", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16037490" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "14760718", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/14760718" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "19139490", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19139490" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "3M7P", "database": "PDB", "url": "https://www.rcsb.org/structure/3M7P" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P02751-15" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=3EJH&bu=0&command=select+.B:542;+center+selection;+zoom+selection" }, "start_pos": 542, "start_aa": "Asn", "end_pos": 542, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn542", "evidence": [ { "id": "29741879", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/29741879" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "24279413", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24279413" }, { "id": "P02751", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P02751#ptm_processing" }, { "id": "16037490", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16037490" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "19139490", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19139490" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "3EJH", "database": "PDB", "url": "https://www.rcsb.org/structure/3EJH" }, { "id": "3GXE", "database": "PDB", "url": "https://www.rcsb.org/structure/3GXE" }, { "id": "3M7P", "database": "PDB", "url": "https://www.rcsb.org/structure/3M7P" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P02751-15" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 2127, "start_aa": "Asn", "end_pos": 2127, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn2127", "evidence": [ { "id": "Q07954", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q07954#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "Q07954-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 3048, "start_aa": "Asn", "end_pos": 3048, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn3048", "evidence": [ { "id": "Q07954", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q07954#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "Q07954-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 446, "start_aa": "Asn", "end_pos": 446, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn446", "evidence": [ { "id": "Q07954", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q07954#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "Q07954-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 729, "start_aa": "Asn", "end_pos": 729, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn729", "evidence": [ { "id": "29741879", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/29741879" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "Q07954", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q07954#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "19139490", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19139490" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "Q07954-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true, "automatic_literature_mining": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 135, "start_aa": "Asn", "end_pos": 135, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn135", "evidence": [ { "id": "O95445", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O95445#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "11418126", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/11418126" }, { "id": "GLY_000481", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000481" } ], "mining_tool": "RLIMS-G_1.0;GlycoSiteMiner_1.0", "mining_tool_list": [ { "label": "RLIMS-G_1.0" }, { "label": "GlycoSiteMiner_1.0" } ], "filter_code": "001000000000000000000.00010000000000.00.01101", "uniprot_canonical_ac": "O95445-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=4FYQ&bu=0&command=select+.A:128;+center+selection;+zoom+selection" }, "start_pos": 128, "start_aa": "Asn", "end_pos": 128, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn128", "evidence": [ { "id": "P15144", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P15144#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "22932899", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/22932899" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "4FYQ", "database": "PDB", "url": "https://www.rcsb.org/structure/4FYQ" }, { "id": "4FYR", "database": "PDB", "url": "https://www.rcsb.org/structure/4FYR" }, { "id": "4FYS", "database": "PDB", "url": "https://www.rcsb.org/structure/4FYS" }, { "id": "4FYT", "database": "PDB", "url": "https://www.rcsb.org/structure/4FYT" }, { "id": "6ATK", "database": "PDB", "url": "https://www.rcsb.org/structure/6ATK" }, { "id": "6U7E", "database": "PDB", "url": "https://www.rcsb.org/structure/6U7E" }, { "id": "6U7F", "database": "PDB", "url": "https://www.rcsb.org/structure/6U7F" }, { "id": "6U7G", "database": "PDB", "url": "https://www.rcsb.org/structure/6U7G" }, { "id": "7VPQ", "database": "PDB", "url": "https://www.rcsb.org/structure/7VPQ" }, { "id": "9CAM", "database": "PDB", "url": "https://www.rcsb.org/structure/9CAM" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "P15144-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=6ATK&bu=0&command=select+.C:234;+center+selection;+zoom+selection" }, "start_pos": 234, "start_aa": "Asn", "end_pos": 234, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn234", "evidence": [ { "id": "29741879", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/29741879" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "P15144", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P15144#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "22932899", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/22932899" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "6ATK", "database": "PDB", "url": "https://www.rcsb.org/structure/6ATK" }, { "id": "6U7E", "database": "PDB", "url": "https://www.rcsb.org/structure/6U7E" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P15144-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=4FYQ&bu=0&command=select+.A:265;+center+selection;+zoom+selection" }, "start_pos": 265, "start_aa": "Asn", "end_pos": 265, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn265", "evidence": [ { "id": "P15144", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P15144#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "15084671", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/15084671" }, { "id": "22932899", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/22932899" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "4FYQ", "database": "PDB", "url": "https://www.rcsb.org/structure/4FYQ" }, { "id": "4FYR", "database": "PDB", "url": "https://www.rcsb.org/structure/4FYR" }, { "id": "4FYS", "database": "PDB", "url": "https://www.rcsb.org/structure/4FYS" }, { "id": "4FYT", "database": "PDB", "url": "https://www.rcsb.org/structure/4FYT" }, { "id": "6ATK", "database": "PDB", "url": "https://www.rcsb.org/structure/6ATK" }, { "id": "6U7E", "database": "PDB", "url": "https://www.rcsb.org/structure/6U7E" }, { "id": "6U7F", "database": "PDB", "url": "https://www.rcsb.org/structure/6U7F" }, { "id": "6U7G", "database": "PDB", "url": "https://www.rcsb.org/structure/6U7G" }, { "id": "7VPQ", "database": "PDB", "url": "https://www.rcsb.org/structure/7VPQ" }, { "id": "8WDE", "database": "PDB", "url": "https://www.rcsb.org/structure/8WDE" }, { "id": "9CAO", "database": "PDB", "url": "https://www.rcsb.org/structure/9CAO" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P15144-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=4FYQ&bu=0&command=select+.A:681;+center+selection;+zoom+selection" }, "start_pos": 681, "start_aa": "Asn", "end_pos": 681, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn681", "evidence": [ { "id": "P15144", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P15144#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "22932899", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/22932899" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "4FYQ", "database": "PDB", "url": "https://www.rcsb.org/structure/4FYQ" }, { "id": "4FYR", "database": "PDB", "url": "https://www.rcsb.org/structure/4FYR" }, { "id": "4FYS", "database": "PDB", "url": "https://www.rcsb.org/structure/4FYS" }, { "id": "6ATK", "database": "PDB", "url": "https://www.rcsb.org/structure/6ATK" }, { "id": "6U7E", "database": "PDB", "url": "https://www.rcsb.org/structure/6U7E" }, { "id": "6U7F", "database": "PDB", "url": "https://www.rcsb.org/structure/6U7F" }, { "id": "6U7G", "database": "PDB", "url": "https://www.rcsb.org/structure/6U7G" }, { "id": "7VPQ", "database": "PDB", "url": "https://www.rcsb.org/structure/7VPQ" }, { "id": "9CAM", "database": "PDB", "url": "https://www.rcsb.org/structure/9CAM" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "P15144-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=4FYQ&bu=0&command=select+.A:818;+center+selection;+zoom+selection" }, "start_pos": 818, "start_aa": "Asn", "end_pos": 818, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn818", "evidence": [ { "id": "P15144", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P15144#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "22932899", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/22932899" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "4FYQ", "database": "PDB", "url": "https://www.rcsb.org/structure/4FYQ" }, { "id": "4FYR", "database": "PDB", "url": "https://www.rcsb.org/structure/4FYR" }, { "id": "4FYT", "database": "PDB", "url": "https://www.rcsb.org/structure/4FYT" }, { "id": "5LHD", "database": "PDB", "url": "https://www.rcsb.org/structure/5LHD" }, { "id": "7VPQ", "database": "PDB", "url": "https://www.rcsb.org/structure/7VPQ" }, { "id": "9CAM", "database": "PDB", "url": "https://www.rcsb.org/structure/9CAM" }, { "id": "9CAO", "database": "PDB", "url": "https://www.rcsb.org/structure/9CAO" } ], "filter_code": "001000000000000000000.00010000000000.00.01101", "uniprot_canonical_ac": "P15144-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "Complex", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) (complex) asparagine;Complex", "icn3d_view": {}, "start_pos": 145, "start_aa": "Asn", "end_pos": 145, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn145", "evidence": [ { "id": "Q8NI99", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8NI99#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "19139490", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19139490" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" } ], "filter_code": "001000000000000000000.10000000000000.00.01001", "uniprot_canonical_ac": "Q8NI99-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=1DZG&bu=0&command=select+.I:96;+center+selection;+zoom+selection" }, "start_pos": 128, "start_aa": "Asn", "end_pos": 128, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn128", "evidence": [ { "id": "24279413", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24279413" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "P01008", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P01008#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "14760718", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/14760718" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "1DZG", "database": "PDB", "url": "https://www.rcsb.org/structure/1DZG" }, { "id": "1DZH", "database": "PDB", "url": "https://www.rcsb.org/structure/1DZH" }, { "id": "1E03", "database": "PDB", "url": "https://www.rcsb.org/structure/1E03" }, { "id": "1E05", "database": "PDB", "url": "https://www.rcsb.org/structure/1E05" }, { "id": "1NQ9", "database": "PDB", "url": "https://www.rcsb.org/structure/1NQ9" }, { "id": "1OYH", "database": "PDB", "url": "https://www.rcsb.org/structure/1OYH" }, { "id": "1TB6", "database": "PDB", "url": "https://www.rcsb.org/structure/1TB6" }, { "id": "2B4X", "database": "PDB", "url": "https://www.rcsb.org/structure/2B4X" }, { "id": "2BEH", "database": "PDB", "url": "https://www.rcsb.org/structure/2BEH" }, { "id": "2GD4", "database": "PDB", "url": "https://www.rcsb.org/structure/2GD4" }, { "id": "2HIJ", "database": "PDB", "url": "https://www.rcsb.org/structure/2HIJ" }, { "id": "2ZNH", "database": "PDB", "url": "https://www.rcsb.org/structure/2ZNH" }, { "id": "3EVJ", "database": "PDB", "url": "https://www.rcsb.org/structure/3EVJ" }, { "id": "4EB1", "database": "PDB", "url": "https://www.rcsb.org/structure/4EB1" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P01008-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=1AZX&bu=0&command=select+.L:155;+center+selection;+zoom+selection" }, "start_pos": 187, "start_aa": "Asn", "end_pos": 187, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn187", "evidence": [ { "id": "24279413", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24279413" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "P01008", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P01008#ptm_processing" }, { "id": "19838169", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19838169" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "14760718", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/14760718" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "15084671", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/15084671" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "1AZX", "database": "PDB", "url": "https://www.rcsb.org/structure/1AZX" }, { "id": "2B4X", "database": "PDB", "url": "https://www.rcsb.org/structure/2B4X" }, { "id": "2B5T", "database": "PDB", "url": "https://www.rcsb.org/structure/2B5T" }, { "id": "2HIJ", "database": "PDB", "url": "https://www.rcsb.org/structure/2HIJ" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P01008-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true, "automatic_literature_mining": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=1AZX&bu=0&command=select+.L:192;+center+selection;+zoom+selection" }, "start_pos": 224, "start_aa": "Asn", "end_pos": 224, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn224", "evidence": [ { "id": "P01008", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P01008#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "16263699", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16263699" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "35486842", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/35486842" }, { "id": "GLY_000481", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000481" }, { "id": "1AZX", "database": "PDB", "url": "https://www.rcsb.org/structure/1AZX" }, { "id": "1DZG", "database": "PDB", "url": "https://www.rcsb.org/structure/1DZG" }, { "id": "1DZH", "database": "PDB", "url": "https://www.rcsb.org/structure/1DZH" }, { "id": "1E05", "database": "PDB", "url": "https://www.rcsb.org/structure/1E05" }, { "id": "1OYH", "database": "PDB", "url": "https://www.rcsb.org/structure/1OYH" }, { "id": "2BEH", "database": "PDB", "url": "https://www.rcsb.org/structure/2BEH" }, { "id": "2GD4", "database": "PDB", "url": "https://www.rcsb.org/structure/2GD4" }, { "id": "2HIJ", "database": "PDB", "url": "https://www.rcsb.org/structure/2HIJ" }, { "id": "2ZNH", "database": "PDB", "url": "https://www.rcsb.org/structure/2ZNH" }, { "id": "4EB1", "database": "PDB", "url": "https://www.rcsb.org/structure/4EB1" } ], "mining_tool": "GlycoSiteMiner_1.0", "mining_tool_list": [ { "label": "GlycoSiteMiner_1.0" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P01008-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 115, "start_aa": "Asn", "end_pos": 115, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn115", "evidence": [ { "id": "Q9Y5C1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9Y5C1#ptm_processing" }, { "id": "10644446", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/10644446" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "Q9Y5C1-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 296, "start_aa": "Asn", "end_pos": 296, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn296", "evidence": [ { "id": "Q9Y5C1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9Y5C1#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "Q9Y5C1-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 357, "start_aa": "Asn", "end_pos": 357, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn357", "evidence": [ { "id": "Q9Y5C1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9Y5C1#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "Q9Y5C1-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=5U7Z&bu=0&command=select+.D:259;+center+selection;+zoom+selection" }, "start_pos": 259, "start_aa": "Asn", "end_pos": 259, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn259", "evidence": [ { "id": "29741879", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/29741879" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "Q13510", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q13510#ptm_processing" }, { "id": "12754519", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/12754519" }, { "id": "16263699", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16263699" }, { "id": "29692406", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/29692406" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "5U7Z", "database": "PDB", "url": "https://www.rcsb.org/sequence/5U7Z" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.00010000000000.00.01100", "uniprot_canonical_ac": "Q13510-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 695, "start_aa": "Asn", "end_pos": 695, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn695", "evidence": [ { "id": "P16144", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P16144#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "P16144-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 276, "start_aa": "Asn", "end_pos": 276, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn276", "evidence": [ { "id": "Q92823", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q92823#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "Q92823-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 210, "start_aa": "Asn", "end_pos": 210, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn210", "evidence": [ { "id": "Q92859", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q92859#ptm_processing" }, { "id": "19349973", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19349973" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "Q92859-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 489, "start_aa": "Asn", "end_pos": 489, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn489", "evidence": [ { "id": "Q92859", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q92859#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "Q92859-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 145, "start_aa": "Asn", "end_pos": 145, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn145", "evidence": [ { "id": "P10646", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P10646#ptm_processing" }, { "id": "19017259", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19017259" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "8639592", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/8639592" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P10646-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=7ZEU&bu=0&command=select+.A:103;+center+selection;+zoom+selection" }, "start_pos": 103, "start_aa": "Asn", "end_pos": 103, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn103", "evidence": [ { "id": "P10909", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P10909#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "9336835", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/9336835" }, { "id": "1551440", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/1551440" }, { "id": "2721499", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/2721499" }, { "id": "7ZEU", "database": "PDB", "url": "https://www.rcsb.org/structure/7ZEU" } ], "filter_code": "001000000000000000000.00010000000000.00.01100", "uniprot_canonical_ac": "P10909-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 145, "start_aa": "Asn", "end_pos": 145, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn145", "evidence": [ { "id": "P10909", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P10909#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "1551440", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/1551440" }, { "id": "9336835", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/9336835" }, { "id": "2721499", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/2721499" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" } ], "filter_code": "001000000000000000000.00010000000000.00.01101", "uniprot_canonical_ac": "P10909-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 291, "start_aa": "Asn", "end_pos": 291, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn291", "evidence": [ { "id": "29741879", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/29741879" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "P10909", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P10909#ptm_processing" }, { "id": "9336835", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/9336835" }, { "id": "2721499", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/2721499" }, { "id": "18780401", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/18780401" }, { "id": "1551440", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/1551440" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" } ], "filter_code": "001000000000000000000.00010000000000.00.01100", "uniprot_canonical_ac": "P10909-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true, "automatic_literature_mining": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 354, "start_aa": "Asn", "end_pos": 354, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn354", "evidence": [ { "id": "P10909", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P10909#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "14760718", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/14760718" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "12754519", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/12754519" }, { "id": "9336835", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/9336835" }, { "id": "1551440", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/1551440" }, { "id": "29427759", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/29427759" }, { "id": "GLY_000481", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000481" } ], "mining_tool": "RLIMS-G_1.0;GlycoSiteMiner_1.0", "mining_tool_list": [ { "label": "RLIMS-G_1.0" }, { "label": "GlycoSiteMiner_1.0" } ], "filter_code": "001000000000000000000.00010000000000.00.01101", "uniprot_canonical_ac": "P10909-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true, "automatic_literature_mining": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 374, "start_aa": "Asn", "end_pos": 374, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn374", "evidence": [ { "id": "19838169", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19838169" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "29741879", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/29741879" }, { "id": "P10909", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P10909#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "14760718", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/14760718" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "9336835", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/9336835" }, { "id": "18780401", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/18780401" }, { "id": "16740002", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16740002" }, { "id": "1551440", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/1551440" }, { "id": "19139490", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19139490" }, { "id": "16263699", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16263699" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "25855029", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/25855029" }, { "id": "GLY_000481", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000481" }, { "id": "35975084", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/35975084" } ], "mining_tool": "GlycoSiteMiner_1.0", "mining_tool_list": [ { "label": "GlycoSiteMiner_1.0" } ], "filter_code": "001000000000000000000.00010000000000.00.01100", "uniprot_canonical_ac": "P10909-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=7ZET&bu=0&command=select+.A:86;+center+selection;+zoom+selection" }, "start_pos": 86, "start_aa": "Asn", "end_pos": 86, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn86", "evidence": [ { "id": "29741879", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/29741879" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "P10909", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P10909#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "9336835", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/9336835" }, { "id": "1551440", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/1551440" }, { "id": "19139490", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19139490" }, { "id": "7ZET", "database": "PDB", "url": "https://www.rcsb.org/structure/7ZET" }, { "id": "7ZEU", "database": "PDB", "url": "https://www.rcsb.org/structure/7ZEU" } ], "filter_code": "001000000000000000000.00010000000000.00.01101", "uniprot_canonical_ac": "P10909-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 1149, "start_aa": "Asn", "end_pos": 1149, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn1149", "evidence": [ { "id": "Q9UQP3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9UQP3#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "Q9UQP3-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 112, "start_aa": "Asn", "end_pos": 112, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn112", "evidence": [ { "id": "P06681", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P06681#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P06681-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 333, "start_aa": "Asn", "end_pos": 333, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn333", "evidence": [ { "id": "P06681", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P06681#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "17027507", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/17027507" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P06681-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=9QPY&bu=0&command=select+.E:467;+center+selection;+zoom+selection" }, "start_pos": 467, "start_aa": "Asn", "end_pos": 467, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn467", "evidence": [ { "id": "P06681", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P06681#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "17027507", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/17027507" }, { "id": "9QPY", "database": "PDB", "url": "https://www.rcsb.org/structure/9QPY" }, { "id": "9QK2", "database": "PDB", "url": "https://www.rcsb.org/structure/9QK2" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P06681-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=9QPY&bu=0&command=select+.E:471;+center+selection;+zoom+selection" }, "start_pos": 471, "start_aa": "Asn", "end_pos": 471, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn471", "evidence": [ { "id": "P06681", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P06681#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "9QPY", "database": "PDB", "url": "https://www.rcsb.org/structure/9QPY" }, { "id": "2I6S", "database": "PDB", "url": "https://www.rcsb.org/structure/2I6S" }, { "id": "9U61", "database": "PDB", "url": "https://www.rcsb.org/structure/9U61" }, { "id": "9QK2", "database": "PDB", "url": "https://www.rcsb.org/structure/9QK2" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P06681-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=2I6Q&bu=0&command=select+.A:601;+center+selection;+zoom+selection" }, "start_pos": 621, "start_aa": "Asn", "end_pos": 621, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn621", "evidence": [ { "id": "P06681", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P06681#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "17027507", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/17027507" }, { "id": "2I6Q", "database": "PDB", "url": "https://www.rcsb.org/structure/2I6Q" }, { "id": "9QK2", "database": "PDB", "url": "https://www.rcsb.org/structure/9QK2" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P06681-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "Complex", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) (complex) asparagine;Complex", "icn3d_view": {}, "start_pos": 651, "start_aa": "Asn", "end_pos": 651, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn651", "evidence": [ { "id": "P06681", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P06681#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "17234210", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/17234210" }, { "id": "2ODQ", "database": "PDB", "url": "https://www.rcsb.org/sequence/2ODQ" } ], "filter_code": "001000000000000000000.10000000000000.00.01001", "uniprot_canonical_ac": "P06681-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "Complex", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) (complex) asparagine;Complex", "icn3d_view": {}, "start_pos": 494, "start_aa": "Asn", "end_pos": 494, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn494", "evidence": [ { "id": "Q12860", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q12860#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "19139490", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19139490" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" } ], "filter_code": "001000000000000000000.10000000000000.00.01001", "uniprot_canonical_ac": "Q12860-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "Complex", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) (complex) asparagine;Complex", "icn3d_view": {}, "start_pos": 156, "start_aa": "Asn", "end_pos": 156, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn156", "evidence": [ { "id": "P02765", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P02765#ptm_processing" }, { "id": "19838169", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19838169" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "14760718", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/14760718" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "16740002", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16740002" }, { "id": "19139490", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19139490" }, { "id": "22171320", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/22171320" } ], "filter_code": "001000000000000000000.10000000000000.00.01001", "uniprot_canonical_ac": "P02765-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 176, "start_aa": "Asn", "end_pos": 176, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn176", "evidence": [ { "id": "19838169", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19838169" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "P02765", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P02765#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "12754519", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/12754519" }, { "id": "16740002", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16740002" }, { "id": "22171320", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/22171320" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P02765-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "Complex", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) (complex) asparagine;Complex", "icn3d_view": {}, "start_pos": 78, "start_aa": "Asn", "end_pos": 78, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn78", "evidence": [ { "id": "P02679", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P02679#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "14760718", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/14760718" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "18780401", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/18780401" }, { "id": "19139490", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19139490" }, { "id": "16263699", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16263699" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.10000000000000.00.01000", "uniprot_canonical_ac": "P02679-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 201, "start_aa": "Asn", "end_pos": 201, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn201", "evidence": [ { "id": "Q6UX04", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q6UX04#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "Q6UX04-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 1743, "start_aa": "Asn", "end_pos": 1743, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn1743", "evidence": [ { "id": "Q9Y6R7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9Y6R7#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "Q9Y6R7-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 2138, "start_aa": "Asn", "end_pos": 2138, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn2138", "evidence": [ { "id": "Q9Y6R7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9Y6R7#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "Q9Y6R7-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 2518, "start_aa": "Asn", "end_pos": 2518, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn2518", "evidence": [ { "id": "Q9Y6R7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9Y6R7#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "16740002", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16740002" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "Q9Y6R7-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 75, "start_aa": "Asn", "end_pos": 75, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn75", "evidence": [ { "id": "Q9Y6R7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9Y6R7#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "Q9Y6R7-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 91, "start_aa": "Asn", "end_pos": 91, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn91", "evidence": [ { "id": "Q9Y6R7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9Y6R7#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "Q9Y6R7-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 545, "start_aa": "Asn", "end_pos": 545, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn545", "evidence": [ { "id": "P05160", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P05160#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P05160-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 278, "start_aa": "Asn", "end_pos": 278, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn278", "evidence": [ { "id": "Q15465", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q15465#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "Q15465-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "Complex", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true, "automatic_literature_mining": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) (complex) asparagine;Complex", "icn3d_view": {}, "start_pos": 109, "start_aa": "Asn", "end_pos": 109, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn109", "evidence": [ { "id": "Q8NBJ4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8NBJ4#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "16740002", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16740002" }, { "id": "19139490", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19139490" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "26993603", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/26993603" }, { "id": "GLY_000481", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000481" } ], "mining_tool": "RLIMS-G_1.0;GlycoSiteMiner_1.0", "mining_tool_list": [ { "label": "RLIMS-G_1.0" }, { "label": "GlycoSiteMiner_1.0" } ], "filter_code": "001000000000000000000.10000000000000.00.01001", "uniprot_canonical_ac": "Q8NBJ4-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=1P53&bu=0&command=select+.B:240;+center+selection;+zoom+selection" }, "start_pos": 267, "start_aa": "Asn", "end_pos": 267, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn267", "evidence": [ { "id": "P05362", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P05362#ptm_processing" }, { "id": "19349973", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19349973" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "15099525", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/15099525" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "1P53", "database": "PDB", "url": "https://www.rcsb.org/structure/1P53" }, { "id": "1Z7Z", "database": "PDB", "url": "https://www.rcsb.org/structure/1Z7Z" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P05362-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=6X4G&bu=0&command=select+.C:186;+center+selection;+zoom+selection" }, "start_pos": 186, "start_aa": "Asn", "end_pos": 186, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn186", "evidence": [ { "id": "O75144", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O75144#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "6X4G", "database": "PDB", "url": "https://www.rcsb.org/structure/6X4G" }, { "id": "6X4T", "database": "PDB", "url": "https://www.rcsb.org/structure/6X4T" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "O75144-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=6X4G&bu=0&command=select+.C:70;+center+selection;+zoom+selection" }, "start_pos": 70, "start_aa": "Asn", "end_pos": 70, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn70", "evidence": [ { "id": "O75144", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O75144#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "6X4G", "database": "PDB", "url": "https://www.rcsb.org/structure/6X4G" }, { "id": "6X4T", "database": "PDB", "url": "https://www.rcsb.org/structure/6X4T" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "O75144-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 109, "start_aa": "Asn", "end_pos": 109, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn109", "evidence": [ { "id": "P18510", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P18510#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "2137200", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/2137200" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P18510-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 108, "start_aa": "Asn", "end_pos": 108, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn108", "evidence": [ { "id": "P29622", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P29622#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P29622-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 157, "start_aa": "Asn", "end_pos": 157, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn157", "evidence": [ { "id": "P29622", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P29622#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "12754519", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/12754519" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P29622-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "Complex", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) (complex) asparagine;Complex", "icn3d_view": {}, "start_pos": 238, "start_aa": "Asn", "end_pos": 238, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn238", "evidence": [ { "id": "P29622", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P29622#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "19139490", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19139490" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.10000000000000.00.01000", "uniprot_canonical_ac": "P29622-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 278, "start_aa": "Asn", "end_pos": 278, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn278", "evidence": [ { "id": "P15151", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P15151#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "P15151-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true, "automatic_literature_mining": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 78, "start_aa": "Asn", "end_pos": 78, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn78", "evidence": [ { "id": "7525874", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/7525874" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "19838169", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19838169" }, { "id": "P41222", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P41222#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "19139490", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19139490" }, { "id": "8336134", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/8336134" }, { "id": "22171320", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/22171320" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "20954982", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/20954982" }, { "id": "GLY_000481", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000481" }, { "id": "34743203", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/34743203" } ], "mining_tool": "GlycoSiteMiner_1.0", "mining_tool_list": [ { "label": "GlycoSiteMiner_1.0" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P41222-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 114, "start_aa": "Asn", "end_pos": 114, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn114", "evidence": [ { "id": "Q13201", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q13201#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "16263699", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16263699" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "Q13201-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 120, "start_aa": "Asn", "end_pos": 120, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn120", "evidence": [ { "id": "Q13201", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q13201#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "Q13201-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "Complex", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) (complex) asparagine;Complex", "icn3d_view": {}, "start_pos": 136, "start_aa": "Asn", "end_pos": 136, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn136", "evidence": [ { "id": "Q13201", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q13201#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "19139490", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19139490" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.10000000000000.00.01001", "uniprot_canonical_ac": "Q13201-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 618, "start_aa": "Asn", "end_pos": 618, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn618", "evidence": [ { "id": "Q13201", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q13201#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "Q13201-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 729, "start_aa": "Asn", "end_pos": 729, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn729", "evidence": [ { "id": "Q13201", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q13201#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "Q13201-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "Complex", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) (complex) asparagine;Complex", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=4AQD&bu=0&command=select+.B:341;+center+selection;+zoom+selection" }, "start_pos": 369, "start_aa": "Asn", "end_pos": 369, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn369", "evidence": [ { "id": "P06276", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P06276#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "18203274", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/18203274" }, { "id": "15667209", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/15667209" }, { "id": "17355286", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/17355286" }, { "id": "18975951", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/18975951" }, { "id": "19368529", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19368529" }, { "id": "12869558", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/12869558" }, { "id": "17768338", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/17768338" }, { "id": "23679855", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23679855" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "4AQD", "database": "PDB", "url": "https://www.rcsb.org/structure/4AQD" }, { "id": "4TPK", "database": "PDB", "url": "https://www.rcsb.org/structure/4TPK" }, { "id": "4XII", "database": "PDB", "url": "https://www.rcsb.org/structure/4XII" }, { "id": "5DYT", "database": "PDB", "url": "https://www.rcsb.org/structure/5DYT" }, { "id": "5DYW", "database": "PDB", "url": "https://www.rcsb.org/structure/5DYW" }, { "id": "5DYY", "database": "PDB", "url": "https://www.rcsb.org/structure/5DYY" }, { "id": "5K5E", "database": "PDB", "url": "https://www.rcsb.org/structure/5K5E" }, { "id": "5LKR", "database": "PDB", "url": "https://www.rcsb.org/structure/5LKR" }, { "id": "6ESJ", "database": "PDB", "url": "https://www.rcsb.org/structure/6ESJ" }, { "id": "6ESY", "database": "PDB", "url": "https://www.rcsb.org/structure/6ESY" }, { "id": "6EZ2", "database": "PDB", "url": "https://www.rcsb.org/structure/6EZ2" }, { "id": "6I2T", "database": "PDB", "url": "https://www.rcsb.org/structure/6I2T" }, { "id": "6RUA", "database": "PDB", "url": "https://www.rcsb.org/structure/6RUA" }, { "id": "6T9S", "database": "PDB", "url": "https://www.rcsb.org/structure/6T9S" } ], "filter_code": "001000000000000000000.10000000000000.00.01001", "uniprot_canonical_ac": "P06276-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "Complex", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) (complex) asparagine;Complex", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=4AQD&bu=0&command=select+.B:17;+center+selection;+zoom+selection" }, "start_pos": 45, "start_aa": "Asn", "end_pos": 45, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn45", "evidence": [ { "id": "P06276", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P06276#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "18203274", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/18203274" }, { "id": "4AQD", "database": "PDB", "url": "https://www.rcsb.org/structure/4AQD" }, { "id": "4TPK", "database": "PDB", "url": "https://www.rcsb.org/structure/4TPK" }, { "id": "4XII", "database": "PDB", "url": "https://www.rcsb.org/structure/4XII" }, { "id": "5DYT", "database": "PDB", "url": "https://www.rcsb.org/structure/5DYT" }, { "id": "5DYW", "database": "PDB", "url": "https://www.rcsb.org/structure/5DYW" }, { "id": "5DYY", "database": "PDB", "url": "https://www.rcsb.org/structure/5DYY" }, { "id": "5K5E", "database": "PDB", "url": "https://www.rcsb.org/structure/5K5E" }, { "id": "5LKR", "database": "PDB", "url": "https://www.rcsb.org/structure/5LKR" }, { "id": "6ESJ", "database": "PDB", "url": "https://www.rcsb.org/structure/6ESJ" }, { "id": "6ESY", "database": "PDB", "url": "https://www.rcsb.org/structure/6ESY" }, { "id": "6EZ2", "database": "PDB", "url": "https://www.rcsb.org/structure/6EZ2" }, { "id": "6I2T", "database": "PDB", "url": "https://www.rcsb.org/structure/6I2T" }, { "id": "6RUA", "database": "PDB", "url": "https://www.rcsb.org/structure/6RUA" } ], "filter_code": "001000000000000000000.10000000000000.00.01001", "uniprot_canonical_ac": "P06276-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "Complex", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) (complex) asparagine;Complex", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=4XII&bu=0&command=select+.B:455;+center+selection;+zoom+selection" }, "start_pos": 483, "start_aa": "Asn", "end_pos": 483, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn483", "evidence": [ { "id": "P06276", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P06276#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "18203274", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/18203274" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "4XII", "database": "PDB", "url": "https://www.rcsb.org/structure/4XII" }, { "id": "5DYY", "database": "PDB", "url": "https://www.rcsb.org/structure/5DYY" }, { "id": "6ESY", "database": "PDB", "url": "https://www.rcsb.org/structure/6ESY" }, { "id": "6EZ2", "database": "PDB", "url": "https://www.rcsb.org/structure/6EZ2" } ], "filter_code": "001000000000000000000.10000000000000.00.01001", "uniprot_canonical_ac": "P06276-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=4AQD&bu=0&command=select+.B:481;+center+selection;+zoom+selection" }, "start_pos": 509, "start_aa": "Asn", "end_pos": 509, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn509", "evidence": [ { "id": "P06276", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P06276#ptm_processing" }, { "id": "14760718", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/14760718" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "3542989", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/3542989" }, { "id": "4AQD", "database": "PDB", "url": "https://www.rcsb.org/structure/4AQD" }, { "id": "4XII", "database": "PDB", "url": "https://www.rcsb.org/structure/4XII" }, { "id": "5DYT", "database": "PDB", "url": "https://www.rcsb.org/structure/5DYT" }, { "id": "5DYW", "database": "PDB", "url": "https://www.rcsb.org/structure/5DYW" }, { "id": "5DYY", "database": "PDB", "url": "https://www.rcsb.org/structure/5DYY" }, { "id": "5K5E", "database": "PDB", "url": "https://www.rcsb.org/structure/5K5E" }, { "id": "5LKR", "database": "PDB", "url": "https://www.rcsb.org/structure/5LKR" }, { "id": "6ESJ", "database": "PDB", "url": "https://www.rcsb.org/structure/6ESJ" }, { "id": "6ESY", "database": "PDB", "url": "https://www.rcsb.org/structure/6ESY" }, { "id": "6EZ2", "database": "PDB", "url": "https://www.rcsb.org/structure/6EZ2" }, { "id": "6I2T", "database": "PDB", "url": "https://www.rcsb.org/structure/6I2T" }, { "id": "6RUA", "database": "PDB", "url": "https://www.rcsb.org/structure/6RUA" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P06276-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 514, "start_aa": "Asn", "end_pos": 514, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn514", "evidence": [ { "id": "P06276", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P06276#ptm_processing" }, { "id": "14760718", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/14760718" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "3542989", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/3542989" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P06276-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "Complex", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) (complex) asparagine;Complex", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=1P0I&bu=0&command=select+.A:57;+center+selection;+zoom+selection" }, "start_pos": 85, "start_aa": "Asn", "end_pos": 85, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn85", "evidence": [ { "id": "P06276", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P06276#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "18203274", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/18203274" }, { "id": "15667209", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/15667209" }, { "id": "17355286", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/17355286" }, { "id": "18975951", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/18975951" }, { "id": "19368529", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19368529" }, { "id": "12869558", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/12869558" }, { "id": "17768338", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/17768338" }, { "id": "23679855", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23679855" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "1P0I", "database": "PDB", "url": "https://www.rcsb.org/structure/1P0I" }, { "id": "1P0M", "database": "PDB", "url": "https://www.rcsb.org/structure/1P0M" }, { "id": "1P0P", "database": "PDB", "url": "https://www.rcsb.org/structure/1P0P" }, { "id": "1P0Q", "database": "PDB", "url": "https://www.rcsb.org/structure/1P0Q" }, { "id": "1XLU", "database": "PDB", "url": "https://www.rcsb.org/structure/1XLU" }, { "id": "1XLV", "database": "PDB", "url": "https://www.rcsb.org/structure/1XLV" }, { "id": "2PM8", "database": "PDB", "url": "https://www.rcsb.org/structure/2PM8" }, { "id": "2WID", "database": "PDB", "url": "https://www.rcsb.org/structure/2WID" }, { "id": "2WIF", "database": "PDB", "url": "https://www.rcsb.org/structure/2WIF" }, { "id": "2WIG", "database": "PDB", "url": "https://www.rcsb.org/structure/2WIG" }, { "id": "2WIJ", "database": "PDB", "url": "https://www.rcsb.org/structure/2WIJ" }, { "id": "2WIK", "database": "PDB", "url": "https://www.rcsb.org/structure/2WIK" }, { "id": "2WIL", "database": "PDB", "url": "https://www.rcsb.org/structure/2WIL" }, { "id": "2WSL", "database": "PDB", "url": "https://www.rcsb.org/structure/2WSL" }, { "id": "2XMB", "database": "PDB", "url": "https://www.rcsb.org/structure/2XMB" }, { "id": "2XMC", "database": "PDB", "url": "https://www.rcsb.org/structure/2XMC" }, { "id": "2XMD", "database": "PDB", "url": "https://www.rcsb.org/structure/2XMD" }, { "id": "2XMG", "database": "PDB", "url": "https://www.rcsb.org/structure/2XMG" }, { "id": "2XQF", "database": "PDB", "url": "https://www.rcsb.org/structure/2XQF" }, { "id": "2XQG", "database": "PDB", "url": "https://www.rcsb.org/structure/2XQG" }, { "id": "2XQI", "database": "PDB", "url": "https://www.rcsb.org/structure/2XQI" }, { "id": "2XQJ", "database": "PDB", "url": "https://www.rcsb.org/structure/2XQJ" }, { "id": "3DJY", "database": "PDB", "url": "https://www.rcsb.org/structure/3DJY" }, { "id": "3DKK", "database": "PDB", "url": "https://www.rcsb.org/structure/3DKK" }, { "id": "2J4C", "database": "PDB", "url": "https://www.rcsb.org/structure/2J4C" }, { "id": "1XLW", "database": "PDB", "url": "https://www.rcsb.org/structure/1XLW" }, { "id": "4AQD", "database": "PDB", "url": "https://www.rcsb.org/structure/4AQD" }, { "id": "4AXB", "database": "PDB", "url": "https://www.rcsb.org/structure/4AXB" }, { "id": "4B0O", "database": "PDB", "url": "https://www.rcsb.org/structure/4B0O" }, { "id": "4B0P", "database": "PDB", "url": "https://www.rcsb.org/structure/4B0P" }, { "id": "4BDS", "database": "PDB", "url": "https://www.rcsb.org/structure/4BDS" }, { "id": "4TPK", "database": "PDB", "url": "https://www.rcsb.org/structure/4TPK" }, { "id": "4XII", "database": "PDB", "url": "https://www.rcsb.org/structure/4XII" }, { "id": "5DYT", "database": "PDB", "url": "https://www.rcsb.org/structure/5DYT" }, { "id": "5DYW", "database": "PDB", "url": "https://www.rcsb.org/structure/5DYW" }, { "id": "5DYY", "database": "PDB", "url": "https://www.rcsb.org/structure/5DYY" }, { "id": "5LKR", "database": "PDB", "url": "https://www.rcsb.org/structure/5LKR" }, { "id": "5NN0", "database": "PDB", "url": "https://www.rcsb.org/structure/5NN0" }, { "id": "6EP4", "database": "PDB", "url": "https://www.rcsb.org/structure/6EP4" }, { "id": "6EQP", "database": "PDB", "url": "https://www.rcsb.org/structure/6EQP" }, { "id": "6EQQ", "database": "PDB", "url": "https://www.rcsb.org/structure/6EQQ" }, { "id": "6ESJ", "database": "PDB", "url": "https://www.rcsb.org/structure/6ESJ" }, { "id": "6ESY", "database": "PDB", "url": "https://www.rcsb.org/structure/6ESY" }, { "id": "6EYF", "database": "PDB", "url": "https://www.rcsb.org/structure/6EYF" }, { "id": "6EZ2", "database": "PDB", "url": "https://www.rcsb.org/structure/6EZ2" }, { "id": "6F7Q", "database": "PDB", "url": "https://www.rcsb.org/structure/6F7Q" }, { "id": "6RUA", "database": "PDB", "url": "https://www.rcsb.org/structure/6RUA" }, { "id": "7Q1O", "database": "PDB", "url": "https://www.rcsb.org/structure/7Q1O" }, { "id": "7Q1P", "database": "PDB", "url": "https://www.rcsb.org/structure/7Q1P" }, { "id": "7QHE", "database": "PDB", "url": "https://www.rcsb.org/structure/7QHE" }, { "id": "8AM1", "database": "PDB", "url": "https://www.rcsb.org/structure/8AM1" }, { "id": "8AM2", "database": "PDB", "url": "https://www.rcsb.org/structure/8AM2" }, { "id": "9I5Q", "database": "PDB", "url": "https://www.rcsb.org/structure/9I5Q" }, { "id": "9SL9", "database": "PDB", "url": "https://www.rcsb.org/structure/9SL9" } ], "filter_code": "001000000000000000000.10000000000000.00.01000", "uniprot_canonical_ac": "P06276-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 98, "start_aa": "Asn", "end_pos": 98, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn98", "evidence": [ { "id": "Q5QGZ9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q5QGZ9#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "Q5QGZ9-2" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 302, "start_aa": "Asn", "end_pos": 302, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn302", "evidence": [ { "id": "P07333", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P07333#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P07333-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 353, "start_aa": "Asn", "end_pos": 353, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn353", "evidence": [ { "id": "P07333", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P07333#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P07333-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 95, "start_aa": "Asn", "end_pos": 95, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn95", "evidence": [ { "id": "Q8IYJ1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8IYJ1#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "Q8IYJ1-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 489, "start_aa": "Asn", "end_pos": 489, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn489", "evidence": [ { "id": "Q9P232", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9P232#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "Q9P232-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 860, "start_aa": "Asn", "end_pos": 860, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn860", "evidence": [ { "id": "Q9P232", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9P232#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "Q9P232-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 931, "start_aa": "Asn", "end_pos": 931, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn931", "evidence": [ { "id": "Q9P232", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9P232#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "Q9P232-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=8D6A&bu=0&command=select+.A:379;+center+selection;+zoom+selection" }, "start_pos": 379, "start_aa": "Asn", "end_pos": 379, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn379", "evidence": [ { "id": "P40189", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P40189#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "11098061", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/11098061" }, { "id": "36930708", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/36930708" }, { "id": "39532904", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/39532904" }, { "id": "8D7R", "database": "PDB", "url": "https://www.rcsb.org/sequence/8D7R" }, { "id": "8D74", "database": "PDB", "url": "https://www.rcsb.org/sequence/8D74" }, { "id": "8D6A", "database": "PDB", "url": "https://www.rcsb.org/sequence/8D6A" }, { "id": "8D82", "database": "PDB", "url": "https://www.rcsb.org/sequence/8D82" }, { "id": "8V29", "database": "PDB", "url": "https://www.rcsb.org/sequence/8V29" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P40189-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=8D6A&bu=0&command=select+.A:383;+center+selection;+zoom+selection" }, "start_pos": 383, "start_aa": "Asn", "end_pos": 383, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn383", "evidence": [ { "id": "P40189", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P40189#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "11098061", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/11098061" }, { "id": "20489211", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/20489211" }, { "id": "36930708", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/36930708" }, { "id": "39532904", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/39532904" }, { "id": "8D7R", "database": "PDB", "url": "https://www.rcsb.org/sequence/8D7R" }, { "id": "8D74", "database": "PDB", "url": "https://www.rcsb.org/sequence/8D74" }, { "id": "8D6A", "database": "PDB", "url": "https://www.rcsb.org/sequence/8D6A" }, { "id": "8D82", "database": "PDB", "url": "https://www.rcsb.org/sequence/8D82" }, { "id": "8V29", "database": "PDB", "url": "https://www.rcsb.org/sequence/8V29" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P40189-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 322, "start_aa": "Asn", "end_pos": 322, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn322", "evidence": [ { "id": "Q96KN2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q96KN2#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "Q96KN2-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 382, "start_aa": "Asn", "end_pos": 382, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn382", "evidence": [ { "id": "Q96KN2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q96KN2#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "Q96KN2-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 500, "start_aa": "Asn", "end_pos": 500, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn500", "evidence": [ { "id": "Q9Y4D7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9Y4D7#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "Q9Y4D7-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=2C9A&bu=0&command=select+.A:131;+center+selection;+zoom+selection" }, "start_pos": 131, "start_aa": "Asn", "end_pos": 131, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn131", "evidence": [ { "id": "P28827", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P28827#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "2C9A", "database": "PDB", "url": "https://www.rcsb.org/structure/2C9A" }, { "id": "2V5Y", "database": "PDB", "url": "https://www.rcsb.org/structure/2V5Y" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P28827-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 312, "start_aa": "Asn", "end_pos": 312, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn312", "evidence": [ { "id": "Q9UBM4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9UBM4#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "Q9UBM4-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=2W08&bu=0&command=select+.E:32;+center+selection;+zoom+selection" }, "start_pos": 51, "start_aa": "Asn", "end_pos": 51, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn51", "evidence": [ { "id": "29741879", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/29741879" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "P02743", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P02743#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "2W08", "database": "PDB", "url": "https://www.rcsb.org/structure/2W08" }, { "id": "3D5O", "database": "PDB", "url": "https://www.rcsb.org/structure/3D5O" }, { "id": "3KQR", "database": "PDB", "url": "https://www.rcsb.org/structure/3KQR" }, { "id": "4AVS", "database": "PDB", "url": "https://www.rcsb.org/structure/4AVS" }, { "id": "4AVT", "database": "PDB", "url": "https://www.rcsb.org/structure/4AVT" }, { "id": "4AVV", "database": "PDB", "url": "https://www.rcsb.org/structure/4AVV" }, { "id": "4AYU", "database": "PDB", "url": "https://www.rcsb.org/structure/4AYU" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P02743-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 529, "start_aa": "Asn", "end_pos": 529, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn529", "evidence": [ { "id": "P08603", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P08603#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "2963625", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/2963625" }, { "id": "17591618", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/17591618" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "P08603-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "Complex", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) (complex) asparagine;Complex", "icn3d_view": {}, "start_pos": 911, "start_aa": "Asn", "end_pos": 911, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn911", "evidence": [ { "id": "P08603", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P08603#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "17591618", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/17591618" }, { "id": "19139490", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19139490" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.10000000000000.00.01001", "uniprot_canonical_ac": "P08603-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "Complex", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) (complex) asparagine;Complex", "icn3d_view": {}, "start_pos": 117, "start_aa": "Asn", "end_pos": 117, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn117", "evidence": [ { "id": "Q6EMK4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q6EMK4#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "19139490", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19139490" }, { "id": "22171320", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/22171320" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" } ], "filter_code": "001000000000000000000.10000000000000.00.01001", "uniprot_canonical_ac": "Q6EMK4-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 273, "start_aa": "Asn", "end_pos": 273, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn273", "evidence": [ { "id": "Q6EMK4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q6EMK4#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "Q6EMK4-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 658, "start_aa": "Asn", "end_pos": 658, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn658", "evidence": [ { "id": "P16112", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P16112#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P16112-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=7P32&bu=0&command=select+.AAA:390;+center+selection;+zoom+selection" }, "start_pos": 390, "start_aa": "Asn", "end_pos": 390, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn390", "evidence": [ { "id": "17293352", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/17293352" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "29741879", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/29741879" }, { "id": "P10253", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P10253#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "8435067", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/8435067" }, { "id": "29061980", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/29061980" }, { "id": "5NN3", "database": "PDB", "url": "https://www.rcsb.org/sequence/5NN3" }, { "id": "5KZW", "database": "PDB", "url": "https://www.rcsb.org/sequence/5KZW" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "7P32", "database": "PDB", "url": "https://www.rcsb.org/structure/7P32" }, { "id": "9GTW", "database": "PDB", "url": "https://www.rcsb.org/structure/9GTW" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "P10253-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 247, "start_aa": "Asn", "end_pos": 247, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn247", "evidence": [ { "id": "Q8NFP4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8NFP4#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "Q8NFP4-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 1026, "start_aa": "Asn", "end_pos": 1026, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn1026", "evidence": [ { "id": "O00533", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O00533#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "O00533-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 476, "start_aa": "Asn", "end_pos": 476, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn476", "evidence": [ { "id": "O00533", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O00533#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "O00533-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 482, "start_aa": "Asn", "end_pos": 482, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn482", "evidence": [ { "id": "O00533", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O00533#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "O00533-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 562, "start_aa": "Asn", "end_pos": 562, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn562", "evidence": [ { "id": "O00533", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O00533#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "O00533-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 767, "start_aa": "Asn", "end_pos": 767, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn767", "evidence": [ { "id": "O00533", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O00533#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "O00533-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 822, "start_aa": "Asn", "end_pos": 822, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn822", "evidence": [ { "id": "O00533", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O00533#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "O00533-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 845, "start_aa": "Asn", "end_pos": 845, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn845", "evidence": [ { "id": "Q9H8L6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9H8L6#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "Q9H8L6-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 367, "start_aa": "Asn", "end_pos": 367, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn367", "evidence": [ { "id": "Q96PD5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q96PD5#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "Q96PD5-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 485, "start_aa": "Asn", "end_pos": 485, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn485", "evidence": [ { "id": "Q96PD5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q96PD5#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "12754519", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/12754519" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "Q96PD5-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 77, "start_aa": "Asn", "end_pos": 77, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn77", "evidence": [ { "id": "Q96PD5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q96PD5#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "Q96PD5-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 121, "start_aa": "Asn", "end_pos": 121, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn121", "evidence": [ { "id": "Q16620", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q16620#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "7574684", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/7574684" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "Q16620-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 254, "start_aa": "Asn", "end_pos": 254, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn254", "evidence": [ { "id": "Q16620", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q16620#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "7574684", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/7574684" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "Q16620-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 67, "start_aa": "Asn", "end_pos": 67, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn67", "evidence": [ { "id": "Q16620", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q16620#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "7574684", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/7574684" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "Q16620-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 614, "start_aa": "Asn", "end_pos": 614, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn614", "evidence": [ { "id": "Q6UXH9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q6UXH9#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "Q6UXH9-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 94, "start_aa": "Asn", "end_pos": 94, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn94", "evidence": [ { "id": "P80108", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P80108#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "P80108-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 323, "start_aa": "Asn", "end_pos": 323, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn323", "evidence": [ { "id": "Q15166", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q15166#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "Q15166-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 410, "start_aa": "Asn", "end_pos": 410, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn410", "evidence": [ { "id": "Q9NPR2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9NPR2#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "Q9NPR2-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 69, "start_aa": "Asn", "end_pos": 69, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn69", "evidence": [ { "id": "Q9NPR2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9NPR2#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "Q9NPR2-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "Complex", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) (complex) asparagine;Complex", "icn3d_view": {}, "start_pos": 246, "start_aa": "Asn", "end_pos": 246, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn246", "evidence": [ { "id": "Q8WZ75", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8WZ75#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "19139490", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19139490" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.10000000000000.00.01001", "uniprot_canonical_ac": "Q8WZ75-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 94, "start_aa": "Asn", "end_pos": 94, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn94", "evidence": [ { "id": "P35542", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P35542#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "1740433", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/1740433" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P35542-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 107, "start_aa": "Asn", "end_pos": 107, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn107", "evidence": [ { "id": "P08294", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P08294#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "P08294-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 380, "start_aa": "Asn", "end_pos": 380, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn380", "evidence": [ { "id": "23001782", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23001782" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "P04278", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P04278#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "3542030", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/3542030" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P04278-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "Complex", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) (complex) asparagine;Complex", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=2XRC&bu=0&command=select+.D:85;+center+selection;+zoom+selection" }, "start_pos": 103, "start_aa": "Asn", "end_pos": 103, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn103", "evidence": [ { "id": "P05156", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P05156#ptm_processing" }, { "id": "19838169", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19838169" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "21768352", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/21768352" }, { "id": "19139490", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19139490" }, { "id": "2XRC", "database": "PDB", "url": "https://www.rcsb.org/sequence/2XRC" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "5O32", "database": "PDB", "url": "https://www.rcsb.org/structure/5O32" } ], "filter_code": "001000000000000000000.10000000000000.00.01000", "uniprot_canonical_ac": "P05156-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=2XRC&bu=0&command=select+.B:159;+center+selection;+zoom+selection" }, "start_pos": 177, "start_aa": "Asn", "end_pos": 177, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn177", "evidence": [ { "id": "P05156", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P05156#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "21768352", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/21768352" }, { "id": "2XRC", "database": "PDB", "url": "https://www.rcsb.org/sequence/2XRC" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "5O32", "database": "PDB", "url": "https://www.rcsb.org/structure/5O32" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P05156-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=2XRC&bu=0&command=select+.D:446;+center+selection;+zoom+selection" }, "start_pos": 464, "start_aa": "Asn", "end_pos": 464, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn464", "evidence": [ { "id": "P05156", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P05156#ptm_processing" }, { "id": "14760718", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/14760718" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "21768352", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/21768352" }, { "id": "2XRC", "database": "PDB", "url": "https://www.rcsb.org/sequence/2XRC" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "5O32", "database": "PDB", "url": "https://www.rcsb.org/structure/5O32" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P05156-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=2XRC&bu=0&command=select+.D:518;+center+selection;+zoom+selection" }, "start_pos": 536, "start_aa": "Asn", "end_pos": 536, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn536", "evidence": [ { "id": "P05156", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P05156#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "21768352", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/21768352" }, { "id": "2XRC", "database": "PDB", "url": "https://www.rcsb.org/sequence/2XRC" }, { "id": "5O32", "database": "PDB", "url": "https://www.rcsb.org/structure/5O32" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P05156-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=2XRC&bu=0&command=select+.D:52;+center+selection;+zoom+selection" }, "start_pos": 70, "start_aa": "Asn", "end_pos": 70, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn70", "evidence": [ { "id": "P05156", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P05156#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "21768352", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/21768352" }, { "id": "2XRC", "database": "PDB", "url": "https://www.rcsb.org/sequence/2XRC" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "5O32", "database": "PDB", "url": "https://www.rcsb.org/structure/5O32" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P05156-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "Complex", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) (complex) asparagine;Complex", "icn3d_view": {}, "start_pos": 53, "start_aa": "Asn", "end_pos": 53, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn53", "evidence": [ { "id": "P01033", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P01033#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "16740002", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16740002" }, { "id": "19139490", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19139490" }, { "id": "16263699", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16263699" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" } ], "filter_code": "001000000000000000000.10000000000000.00.01000", "uniprot_canonical_ac": "P01033-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 111, "start_aa": "Asn", "end_pos": 111, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn111", "evidence": [ { "id": "Q9H4A9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9H4A9#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "Q9H4A9-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 235, "start_aa": "Asn", "end_pos": 235, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn235", "evidence": [ { "id": "Q9H4A9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9H4A9#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "Q9H4A9-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "Complex", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) (complex) asparagine;Complex", "icn3d_view": {}, "start_pos": 184, "start_aa": "Asn", "end_pos": 184, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn184", "evidence": [ { "id": "P09172", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P09172#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "27152332", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/27152332" }, { "id": "19139490", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19139490" }, { "id": "4ZEL", "database": "PDB", "url": "https://www.rcsb.org/sequence/4ZEL" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.10000000000000.00.01001", "uniprot_canonical_ac": "P09172-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 110, "start_aa": "Asn", "end_pos": 110, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn110", "evidence": [ { "id": "P28068", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P28068#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P28068-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 103, "start_aa": "Asn", "end_pos": 103, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn103", "evidence": [ { "id": "Q99784", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q99784#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "Q99784-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 187, "start_aa": "Asn", "end_pos": 187, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn187", "evidence": [ { "id": "Q99784", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q99784#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "Q99784-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=6QHJ&bu=0&command=select+.A:288;+center+selection;+zoom+selection" }, "start_pos": 288, "start_aa": "Asn", "end_pos": 288, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn288", "evidence": [ { "id": "Q99784", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q99784#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "6QHJ", "database": "PDB", "url": "https://www.rcsb.org/structure/6QHJ" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "Q99784-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=6QHJ&bu=0&command=select+.A:394;+center+selection;+zoom+selection" }, "start_pos": 394, "start_aa": "Asn", "end_pos": 394, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn394", "evidence": [ { "id": "Q99784", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q99784#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "6QHJ", "database": "PDB", "url": "https://www.rcsb.org/structure/6QHJ" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "Q99784-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "Complex", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) (complex) asparagine;Complex", "icn3d_view": {}, "start_pos": 136, "start_aa": "Asn", "end_pos": 136, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn136", "evidence": [ { "id": "P17936", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P17936#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "14760718", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/14760718" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "19139490", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19139490" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" } ], "filter_code": "001000000000000000000.10000000000000.00.01000", "uniprot_canonical_ac": "P17936-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "Complex", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) (complex) asparagine;Complex", "icn3d_view": {}, "start_pos": 199, "start_aa": "Asn", "end_pos": 199, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn199", "evidence": [ { "id": "P17936", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P17936#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "19139490", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19139490" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" } ], "filter_code": "001000000000000000000.10000000000000.00.01001", "uniprot_canonical_ac": "P17936-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 102, "start_aa": "Asn", "end_pos": 102, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn102", "evidence": [ { "id": "P07307", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P07307#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P07307-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 1354, "start_aa": "Asn", "end_pos": 1354, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn1354", "evidence": [ { "id": "Q76LX8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q76LX8#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "Q76LX8-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true, "automatic_literature_mining": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 614, "start_aa": "Asn", "end_pos": 614, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn614", "evidence": [ { "id": "Q76LX8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q76LX8#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "19880749", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19880749" }, { "id": "3GHN", "database": "PDB", "url": "https://www.rcsb.org/sequence/3GHN" }, { "id": "3GHM", "database": "PDB", "url": "https://www.rcsb.org/sequence/3GHM" }, { "id": "3VN4", "database": "PDB", "url": "https://www.rcsb.org/sequence/3VN4" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "27574189", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/27574189" }, { "id": "GLY_000481", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000481" } ], "mining_tool": "RLIMS-G_1.0;GlycoSiteMiner_1.0", "mining_tool_list": [ { "label": "RLIMS-G_1.0" }, { "label": "GlycoSiteMiner_1.0" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "Q76LX8-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "Complex", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) (complex) asparagine;Complex", "icn3d_view": {}, "start_pos": 667, "start_aa": "Asn", "end_pos": 667, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn667", "evidence": [ { "id": "Q76LX8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q76LX8#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "19139490", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19139490" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.10000000000000.00.01000", "uniprot_canonical_ac": "Q76LX8-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 420, "start_aa": "Asn", "end_pos": 420, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn420", "evidence": [ { "id": "Q9HD20", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9HD20#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "Q9HD20-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 1043, "start_aa": "Asn", "end_pos": 1043, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn1043", "evidence": [ { "id": "O75882", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O75882#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "O75882-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 1198, "start_aa": "Asn", "end_pos": 1198, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn1198", "evidence": [ { "id": "O75882", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O75882#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "O75882-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 1250, "start_aa": "Asn", "end_pos": 1250, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn1250", "evidence": [ { "id": "O75882", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O75882#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "O75882-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 1259, "start_aa": "Asn", "end_pos": 1259, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn1259", "evidence": [ { "id": "O75882", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O75882#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "O75882-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 264, "start_aa": "Asn", "end_pos": 264, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn264", "evidence": [ { "id": "O75882", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O75882#ptm_processing" }, { "id": "14760718", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/14760718" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "O75882-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "Complex", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) (complex) asparagine;Complex", "icn3d_view": {}, "start_pos": 300, "start_aa": "Asn", "end_pos": 300, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn300", "evidence": [ { "id": "O75882", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O75882#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "19139490", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19139490" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" } ], "filter_code": "001000000000000000000.10000000000000.00.01001", "uniprot_canonical_ac": "O75882-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "Complex", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) (complex) asparagine;Complex", "icn3d_view": {}, "start_pos": 383, "start_aa": "Asn", "end_pos": 383, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn383", "evidence": [ { "id": "O75882", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O75882#ptm_processing" }, { "id": "14760718", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/14760718" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "19139490", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19139490" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" } ], "filter_code": "001000000000000000000.10000000000000.00.01001", "uniprot_canonical_ac": "O75882-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 416, "start_aa": "Asn", "end_pos": 416, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn416", "evidence": [ { "id": "O75882", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O75882#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "O75882-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 428, "start_aa": "Asn", "end_pos": 428, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn428", "evidence": [ { "id": "O75882", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O75882#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "O75882-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 575, "start_aa": "Asn", "end_pos": 575, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn575", "evidence": [ { "id": "O75882", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O75882#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "O75882-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 623, "start_aa": "Asn", "end_pos": 623, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn623", "evidence": [ { "id": "O75882", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O75882#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "O75882-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "Complex", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) (complex) asparagine;Complex", "icn3d_view": {}, "start_pos": 105, "start_aa": "Asn", "end_pos": 105, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn105", "evidence": [ { "id": "Q86VB7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q86VB7#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "19139490", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19139490" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.10000000000000.00.01001", "uniprot_canonical_ac": "Q86VB7-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=6F1C&bu=0&command=select+.C:108;+center+selection;+zoom+selection" }, "start_pos": 125, "start_aa": "Asn", "end_pos": 125, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn125", "evidence": [ { "id": "P00736", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P00736#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "6F39", "database": "PDB", "url": "https://www.rcsb.org/sequence/6F39" }, { "id": "29311313", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/29311313" }, { "id": "6F1H", "database": "PDB", "url": "https://www.rcsb.org/sequence/6F1H" }, { "id": "6F1C", "database": "PDB", "url": "https://www.rcsb.org/sequence/6F1C" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P00736-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 221, "start_aa": "Asn", "end_pos": 221, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn221", "evidence": [ { "id": "P00736", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P00736#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "P00736-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=1MD7&bu=0&command=select+.A:497;+center+selection;+zoom+selection" }, "start_pos": 514, "start_aa": "Asn", "end_pos": 514, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn514", "evidence": [ { "id": "P00736", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P00736#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "1MD7", "database": "PDB", "url": "https://www.rcsb.org/structure/1MD7" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P00736-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 406, "start_aa": "Asn", "end_pos": 406, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn406", "evidence": [ { "id": "P09871", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P09871#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "12788922", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/12788922" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P09871-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 79, "start_aa": "Asn", "end_pos": 79, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn79", "evidence": [ { "id": "Q9NY97", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9NY97#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "Q9NY97-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 221, "start_aa": "Asn", "end_pos": 221, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn221", "evidence": [ { "id": "P04003", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P04003#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "3840370", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/3840370" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P04003-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 506, "start_aa": "Asn", "end_pos": 506, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn506", "evidence": [ { "id": "P04003", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P04003#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "14760718", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/14760718" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "3840370", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/3840370" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "P04003-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 64, "start_aa": "Asn", "end_pos": 64, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn64", "evidence": [ { "id": "P20851", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P20851#ptm_processing" }, { "id": "14760718", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/14760718" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P20851-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 98, "start_aa": "Asn", "end_pos": 98, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn98", "evidence": [ { "id": "P20851", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P20851#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "14760718", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/14760718" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "P20851-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 118, "start_aa": "Asn", "end_pos": 118, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn118", "evidence": [ { "id": "O75493", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O75493#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "O75493-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true, "automatic_literature_mining": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=3IV2&bu=0&command=select+.A:108;+center+selection;+zoom+selection" }, "start_pos": 221, "start_aa": "Asn", "end_pos": 221, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn221", "evidence": [ { "id": "P07711", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P07711#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "12754519", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/12754519" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "35494076", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/35494076" }, { "id": "GLY_000481", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000481" }, { "id": "3IV2", "database": "PDB", "url": "https://www.rcsb.org/structure/3IV2" }, { "id": "3K24", "database": "PDB", "url": "https://www.rcsb.org/structure/3K24" } ], "mining_tool": "GlycoSiteMiner_1.0", "mining_tool_list": [ { "label": "GlycoSiteMiner_1.0" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P07711-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=7MU8&bu=0&command=select+.B:70;+center+selection;+zoom+selection" }, "start_pos": 104, "start_aa": "Asn", "end_pos": 104, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn104", "evidence": [ { "id": "P13688", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P13688#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" }, { "id": "7MU8", "database": "PDB", "url": "https://www.rcsb.org/structure/7MU8" }, { "id": "9GH5", "database": "PDB", "url": "https://www.rcsb.org/structure/9GH5" }, { "id": "9GH6", "database": "PDB", "url": "https://www.rcsb.org/structure/9GH6" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P13688-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=7MU8&bu=0&command=select+.B:77;+center+selection;+zoom+selection" }, "start_pos": 111, "start_aa": "Asn", "end_pos": 111, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn111", "evidence": [ { "id": "P13688", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P13688#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" }, { "id": "7MU8", "database": "PDB", "url": "https://www.rcsb.org/structure/7MU8" }, { "id": "9GH5", "database": "PDB", "url": "https://www.rcsb.org/structure/9GH5" }, { "id": "9GH6", "database": "PDB", "url": "https://www.rcsb.org/structure/9GH6" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "P13688-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1067, "start_aa": "Asn", "end_pos": 1067, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn1067", "evidence": [ { "id": "29741879", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/29741879" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "P07996", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P07996#ptm_processing" }, { "id": "16740002", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16740002" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "15014436", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/15014436" } ], "filter_code": "001000000000000000000.00010000000000.00.01100", "uniprot_canonical_ac": "P07996-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 248, "start_aa": "Asn", "end_pos": 248, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn248", "evidence": [ { "id": "P07996", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P07996#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "16263699", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16263699" }, { "id": "18065761", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/18065761" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P07996-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true, "automatic_literature_mining": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 57, "start_aa": "Asn", "end_pos": 57, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn57", "evidence": [ { "id": "P16070", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P16070#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "37703748", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/37703748" }, { "id": "GLY_000481", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000481" } ], "mining_tool": "GlycoSiteMiner_1.0", "mining_tool_list": [ { "label": "GlycoSiteMiner_1.0" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "P16070-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "Complex", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) (complex) asparagine;Complex", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=3D66&bu=0&command=select+.A:86;+center+selection;+zoom+selection" }, "start_pos": 108, "start_aa": "Asn", "end_pos": 108, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn108", "evidence": [ { "id": "Q96IY4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q96IY4#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "16445295", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16445295" }, { "id": "18559974", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/18559974" }, { "id": "22171320", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/22171320" }, { "id": "3D66", "database": "PDB", "url": "https://www.rcsb.org/structure/3D66" }, { "id": "3D68", "database": "PDB", "url": "https://www.rcsb.org/structure/3D68" }, { "id": "3D67", "database": "PDB", "url": "https://www.rcsb.org/structure/3D67" }, { "id": "4P10", "database": "PDB", "url": "https://www.rcsb.org/structure/4P10" }, { "id": "5HVF", "database": "PDB", "url": "https://www.rcsb.org/structure/5HVF" }, { "id": "5HVG", "database": "PDB", "url": "https://www.rcsb.org/structure/5HVG" }, { "id": "5HVH", "database": "PDB", "url": "https://www.rcsb.org/structure/5HVH" } ], "filter_code": "001000000000000000000.10000000000000.00.01001", "uniprot_canonical_ac": "Q96IY4-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=3D66&bu=0&command=select+.A:22;+center+selection;+zoom+selection" }, "start_pos": 44, "start_aa": "Asn", "end_pos": 44, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn44", "evidence": [ { "id": "Q96IY4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q96IY4#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "16445295", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16445295" }, { "id": "18559974", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/18559974" }, { "id": "3D66", "database": "PDB", "url": "https://www.rcsb.org/structure/3D66" }, { "id": "3D68", "database": "PDB", "url": "https://www.rcsb.org/structure/3D68" }, { "id": "3D67", "database": "PDB", "url": "https://www.rcsb.org/structure/3D67" }, { "id": "7NEU", "database": "PDB", "url": "https://www.rcsb.org/structure/7NEU" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "Q96IY4-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=3D66&bu=0&command=select+.A:51;+center+selection;+zoom+selection" }, "start_pos": 73, "start_aa": "Asn", "end_pos": 73, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn73", "evidence": [ { "id": "Q96IY4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q96IY4#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "16445295", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16445295" }, { "id": "18559974", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/18559974" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "3D66", "database": "PDB", "url": "https://www.rcsb.org/structure/3D66" }, { "id": "3D68", "database": "PDB", "url": "https://www.rcsb.org/structure/3D68" }, { "id": "3D67", "database": "PDB", "url": "https://www.rcsb.org/structure/3D67" }, { "id": "5HVF", "database": "PDB", "url": "https://www.rcsb.org/structure/5HVF" }, { "id": "5HVG", "database": "PDB", "url": "https://www.rcsb.org/structure/5HVG" }, { "id": "7NEU", "database": "PDB", "url": "https://www.rcsb.org/structure/7NEU" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "Q96IY4-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 31, "start_aa": "Asn", "end_pos": 31, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn31", "evidence": [ { "id": "P08185", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P08185#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P08185-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 330, "start_aa": "Asn", "end_pos": 330, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn330", "evidence": [ { "id": "P08185", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P08185#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P08185-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 369, "start_aa": "Asn", "end_pos": 369, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn369", "evidence": [ { "id": "P08185", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P08185#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P08185-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 96, "start_aa": "Asn", "end_pos": 96, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn96", "evidence": [ { "id": "P08185", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P08185#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "14760718", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/14760718" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "P08185-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 179, "start_aa": "Asn", "end_pos": 179, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn179", "evidence": [ { "id": "Q9Y646", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9Y646#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "Q9Y646-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 353, "start_aa": "Asn", "end_pos": 353, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn353", "evidence": [ { "id": "Q9Y646", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9Y646#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "Q9Y646-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 356, "start_aa": "Asn", "end_pos": 356, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn356", "evidence": [ { "id": "Q9Y646", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9Y646#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "Q9Y646-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true, "automatic_literature_mining": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=1KCW&bu=0&command=select+.A:119;+center+selection;+zoom+selection" }, "start_pos": 138, "start_aa": "Asn", "end_pos": 138, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn138", "evidence": [ { "id": "29671580", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/29671580" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "24279413", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24279413" }, { "id": "19838169", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19838169" }, { "id": "24841998", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24841998" }, { "id": "16321355", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16321355" }, { "id": "P00450", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P00450#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "14760718", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/14760718" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "4EJX", "database": "PDB", "url": "https://www.rcsb.org/sequence/4EJX" }, { "id": "1KCW", "database": "PDB", "url": "https://www.rcsb.org/sequence/1KCW" }, { "id": "17242517", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/17242517" }, { "id": "4ENZ", "database": "PDB", "url": "https://www.rcsb.org/sequence/4ENZ" }, { "id": "2J5W", "database": "PDB", "url": "https://www.rcsb.org/sequence/2J5W" }, { "id": "23843990", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23843990" }, { "id": "19139490", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19139490" }, { "id": "15084671", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/15084671" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "29427759", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/29427759" }, { "id": "GLY_000481", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000481" } ], "mining_tool": "RLIMS-G_1.0", "mining_tool_list": [ { "label": "RLIMS-G_1.0" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P00450-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 358, "start_aa": "Asn", "end_pos": 358, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn358", "evidence": [ { "id": "29671580", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/29671580" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "19838169", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19838169" }, { "id": "16321355", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16321355" }, { "id": "P00450", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P00450#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "19139490", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19139490" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P00450-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true, "automatic_literature_mining": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=2J5W&bu=0&command=select+.A:378;+center+selection;+zoom+selection" }, "start_pos": 397, "start_aa": "Asn", "end_pos": 397, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn397", "evidence": [ { "id": "24279413", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24279413" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "24841998", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24841998" }, { "id": "16321355", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16321355" }, { "id": "P00450", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P00450#ptm_processing" }, { "id": "19838169", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19838169" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "14760718", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/14760718" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "4EJX", "database": "PDB", "url": "https://www.rcsb.org/sequence/4EJX" }, { "id": "17242517", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/17242517" }, { "id": "4ENZ", "database": "PDB", "url": "https://www.rcsb.org/sequence/4ENZ" }, { "id": "2J5W", "database": "PDB", "url": "https://www.rcsb.org/sequence/2J5W" }, { "id": "23843990", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23843990" }, { "id": "19139490", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19139490" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "29427759", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/29427759" }, { "id": "GLY_000481", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000481" } ], "mining_tool": "RLIMS-G_1.0", "mining_tool_list": [ { "label": "RLIMS-G_1.0" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P00450-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 588, "start_aa": "Asn", "end_pos": 588, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn588", "evidence": [ { "id": "P00450", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P00450#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P00450-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true, "automatic_literature_mining": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=1KCW&bu=0&command=select+.A:743;+center+selection;+zoom+selection" }, "start_pos": 762, "start_aa": "Asn", "end_pos": 762, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn762", "evidence": [ { "id": "16321355", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16321355" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "24279413", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24279413" }, { "id": "P00450", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P00450#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "14760718", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/14760718" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "1KCW", "database": "PDB", "url": "https://www.rcsb.org/sequence/1KCW" }, { "id": "19139490", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19139490" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "29427759", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/29427759" }, { "id": "GLY_000481", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000481" }, { "id": "35372033", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/35372033" } ], "mining_tool": "GlycoSiteMiner_1.0", "mining_tool_list": [ { "label": "GlycoSiteMiner_1.0" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P00450-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 926, "start_aa": "Asn", "end_pos": 926, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn926", "evidence": [ { "id": "P00450", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P00450#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "P00450-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 257, "start_aa": "Asn", "end_pos": 257, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn257", "evidence": [ { "id": "P11597", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P11597#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P11597-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 358, "start_aa": "Asn", "end_pos": 358, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn358", "evidence": [ { "id": "P11597", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P11597#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P11597-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 118, "start_aa": "Asn", "end_pos": 118, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn118", "evidence": [ { "id": "P02766", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P02766#ptm_processing" }, { "id": "19167329", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19167329" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "P02766-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 308, "start_aa": "Asn", "end_pos": 308, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn308", "evidence": [ { "id": "Q9HBB8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9HBB8#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "Q9HBB8-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 81, "start_aa": "Asn", "end_pos": 81, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn81", "evidence": [ { "id": "Q9HBB8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9HBB8#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "Q9HBB8-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 407, "start_aa": "Asn", "end_pos": 407, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn407", "evidence": [ { "id": "Q9NS84", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9NS84#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "Q9NS84-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 105, "start_aa": "Asn", "end_pos": 105, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn105", "evidence": [ { "id": "P23471", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P23471#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" } ], "filter_code": "001000000000000000000.00010000000000.00.xxxxx", "uniprot_canonical_ac": "P23471-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 904, "start_aa": "Asn", "end_pos": 904, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn904", "evidence": [ { "id": "Q02246", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q02246#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "Q02246-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 500, "start_aa": "Asn", "end_pos": 500, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn500", "evidence": [ { "id": "P55290", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P55290#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P55290-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 638, "start_aa": "Asn", "end_pos": 638, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn638", "evidence": [ { "id": "P55290", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P55290#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "P55290-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 86, "start_aa": "Asn", "end_pos": 86, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn86", "evidence": [ { "id": "P55290", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P55290#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P55290-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 65, "start_aa": "Asn", "end_pos": 65, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn65", "evidence": [ { "id": "Q8IWV2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8IWV2#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "Q8IWV2-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "Complex", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) (complex) asparagine;Complex", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=9QPY&bu=0&command=select+.B:1328;+center+selection;+zoom+selection" }, "start_pos": 1328, "start_aa": "Asn", "end_pos": 1328, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn1328", "evidence": [ { "id": "P0C0L4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P0C0L4#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "18780401", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/18780401" }, { "id": "19139490", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19139490" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "9QPY", "database": "PDB", "url": "https://www.rcsb.org/structure/9QPY" }, { "id": "7B2M", "database": "PDB", "url": "https://www.rcsb.org/structure/7B2M" }, { "id": "7B2Q", "database": "PDB", "url": "https://www.rcsb.org/structure/7B2Q" }, { "id": "7B2P", "database": "PDB", "url": "https://www.rcsb.org/structure/7B2P" }, { "id": "9QJ4", "database": "PDB", "url": "https://www.rcsb.org/structure/9QJ4" }, { "id": "9QJ5", "database": "PDB", "url": "https://www.rcsb.org/structure/9QJ5" } ], "filter_code": "001000000000000000000.10000000000000.00.01000", "uniprot_canonical_ac": "P0C0L4-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=7B2M&bu=0&command=select+.B:1391;+center+selection;+zoom+selection" }, "start_pos": 1391, "start_aa": "Asn", "end_pos": 1391, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn1391", "evidence": [ { "id": "P0C0L4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P0C0L4#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "14760718", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/14760718" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "7B2M", "database": "PDB", "url": "https://www.rcsb.org/structure/7B2M" }, { "id": "7B2Q", "database": "PDB", "url": "https://www.rcsb.org/structure/7B2Q" }, { "id": "7B2P", "database": "PDB", "url": "https://www.rcsb.org/structure/7B2P" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "P0C0L4-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=9QPY&bu=0&command=select+.B:862;+center+selection;+zoom+selection" }, "start_pos": 862, "start_aa": "Asn", "end_pos": 862, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn862", "evidence": [ { "id": "P0C0L4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P0C0L4#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "27599733", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/27599733" }, { "id": "9QPY", "database": "PDB", "url": "https://www.rcsb.org/structure/9QPY" }, { "id": "5JTW", "database": "PDB", "url": "https://www.rcsb.org/structure/5JTW" }, { "id": "7B2M", "database": "PDB", "url": "https://www.rcsb.org/structure/7B2M" }, { "id": "7B2Q", "database": "PDB", "url": "https://www.rcsb.org/structure/7B2Q" }, { "id": "7B2P", "database": "PDB", "url": "https://www.rcsb.org/structure/7B2P" }, { "id": "9QJ4", "database": "PDB", "url": "https://www.rcsb.org/structure/9QJ4" }, { "id": "9QJ5", "database": "PDB", "url": "https://www.rcsb.org/structure/9QJ5" }, { "id": "9QK2", "database": "PDB", "url": "https://www.rcsb.org/structure/9QK2" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "P0C0L4-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=4A5W&bu=0&command=select+.B:324;+center+selection;+zoom+selection" }, "start_pos": 324, "start_aa": "Asn", "end_pos": 324, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn324", "evidence": [ { "id": "P13671", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P13671#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "22267737", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/22267737" }, { "id": "4A5W", "database": "PDB", "url": "https://www.rcsb.org/structure/4A5W" }, { "id": "7NYC", "database": "PDB", "url": "https://www.rcsb.org/structure/7NYC" }, { "id": "6H04", "database": "PDB", "url": "https://www.rcsb.org/structure/6H04" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P13671-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=4A5W&bu=0&command=select+.B:855;+center+selection;+zoom+selection" }, "start_pos": 855, "start_aa": "Asn", "end_pos": 855, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn855", "evidence": [ { "id": "P13671", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P13671#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "4A5W", "database": "PDB", "url": "https://www.rcsb.org/structure/4A5W" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P13671-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 1630, "start_aa": "Asn", "end_pos": 1630, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn1630", "evidence": [ { "id": "P01031", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P01031#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P01031-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=3CU7&bu=0&command=select+.A:741;+center+selection;+zoom+selection" }, "start_pos": 741, "start_aa": "Asn", "end_pos": 741, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn741", "evidence": [ { "id": "P01031", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P01031#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "18536718", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/18536718" }, { "id": "3KLS", "database": "PDB", "url": "https://www.rcsb.org/sequence/3KLS" }, { "id": "3KM9", "database": "PDB", "url": "https://www.rcsb.org/sequence/3KM9" }, { "id": "3CU7", "database": "PDB", "url": "https://www.rcsb.org/sequence/3CU7" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P01031-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=3PVM&bu=0&command=select+.C:911;+center+selection;+zoom+selection" }, "start_pos": 911, "start_aa": "Asn", "end_pos": 911, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn911", "evidence": [ { "id": "P01031", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P01031#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "18536718", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/18536718" }, { "id": "21217642", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/21217642" }, { "id": "3KLS", "database": "PDB", "url": "https://www.rcsb.org/sequence/3KLS" }, { "id": "3KM9", "database": "PDB", "url": "https://www.rcsb.org/sequence/3KM9" }, { "id": "3CU7", "database": "PDB", "url": "https://www.rcsb.org/sequence/3CU7" }, { "id": "3PVM", "database": "PDB", "url": "https://www.rcsb.org/structure/3PVM" }, { "id": "3PRX", "database": "PDB", "url": "https://www.rcsb.org/structure/3PRX" }, { "id": "8COE", "database": "PDB", "url": "https://www.rcsb.org/structure/8COE" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "P01031-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "Complex", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) (complex) asparagine;Complex", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=7NYD&bu=0&command=select+.H:394;+center+selection;+zoom+selection" }, "start_pos": 415, "start_aa": "Asn", "end_pos": 415, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn415", "evidence": [ { "id": "P02748", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P02748#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "14760718", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/14760718" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "4055801", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/4055801" }, { "id": "19139490", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19139490" }, { "id": "16263699", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16263699" }, { "id": "30552328", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/30552328" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "7NYD", "database": "PDB", "url": "https://www.rcsb.org/structure/7NYD" }, { "id": "7NYC", "database": "PDB", "url": "https://www.rcsb.org/structure/7NYC" } ], "filter_code": "001000000000000000000.10000000000000.00.01000", "uniprot_canonical_ac": "P02748-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=7NYC&bu=0&command=select+.E:407;+center+selection;+zoom+selection" }, "start_pos": 437, "start_aa": "Asn", "end_pos": 437, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn437", "evidence": [ { "id": "P07357", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P07357#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "30552328", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/30552328" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "7NYC", "database": "PDB", "url": "https://www.rcsb.org/structure/7NYC" }, { "id": "6H03", "database": "PDB", "url": "https://www.rcsb.org/structure/6H03" }, { "id": "8B0F", "database": "PDB", "url": "https://www.rcsb.org/structure/8B0F" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P07357-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 113, "start_aa": "Asn", "end_pos": 113, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn113", "evidence": [ { "id": "P23470", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P23470#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P23470-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 444, "start_aa": "Asn", "end_pos": 444, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn444", "evidence": [ { "id": "P23470", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P23470#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "P23470-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=7QOX&bu=0&command=select+.B:108;+center+selection;+zoom+selection" }, "start_pos": 127, "start_aa": "Asn", "end_pos": 127, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn127", "evidence": [ { "id": "P03952", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P03952#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "3521732", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/3521732" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "7QOX", "database": "PDB", "url": "https://www.rcsb.org/structure/7QOX" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P03952-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 308, "start_aa": "Asn", "end_pos": 308, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn308", "evidence": [ { "id": "P03952", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P03952#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "3521732", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/3521732" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "P03952-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=10LR&bu=0&command=select+.A:396;+center+selection;+zoom+selection" }, "start_pos": 396, "start_aa": "Asn", "end_pos": 396, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn396", "evidence": [ { "id": "P03952", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P03952#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "3521732", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/3521732" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "10LR", "database": "PDB", "url": "https://www.rcsb.org/structure/10LR" }, { "id": "10MV", "database": "PDB", "url": "https://www.rcsb.org/structure/10MV" }, { "id": "10MW", "database": "PDB", "url": "https://www.rcsb.org/structure/10MW" }, { "id": "8A3Q", "database": "PDB", "url": "https://www.rcsb.org/structure/8A3Q" }, { "id": "8FGX", "database": "PDB", "url": "https://www.rcsb.org/structure/8FGX" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P03952-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=8FGX&bu=0&command=select+.C:453;+center+selection;+zoom+selection" }, "start_pos": 453, "start_aa": "Asn", "end_pos": 453, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn453", "evidence": [ { "id": "P03952", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P03952#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "12754519", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/12754519" }, { "id": "3521732", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/3521732" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "8FGX", "database": "PDB", "url": "https://www.rcsb.org/structure/8FGX" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "P03952-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=8FGX&bu=0&command=select+.C:494;+center+selection;+zoom+selection" }, "start_pos": 494, "start_aa": "Asn", "end_pos": 494, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn494", "evidence": [ { "id": "P03952", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P03952#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "3521732", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/3521732" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "8FGX", "database": "PDB", "url": "https://www.rcsb.org/structure/8FGX" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "P03952-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1279, "start_aa": "Asn", "end_pos": 1279, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn1279", "evidence": [ { "id": "29741879", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/29741879" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "P07942", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P07942#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P07942-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 363, "start_aa": "Asn", "end_pos": 363, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn363", "evidence": [ { "id": "P24043", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P24043#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "P24043-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=8OS2&bu=0&command=select+.A:53;+center+selection;+zoom+selection" }, "start_pos": 53, "start_aa": "Asn", "end_pos": 53, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn53", "evidence": [ { "id": "Q9Y5Y7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9Y5Y7#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "8OS2", "database": "PDB", "url": "https://www.rcsb.org/structure/8OS2" }, { "id": "8OXD", "database": "PDB", "url": "https://www.rcsb.org/structure/8OXD" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "Q9Y5Y7-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 40, "start_aa": "Asn", "end_pos": 40, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn40", "evidence": [ { "id": "P06315", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P06315#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P06315-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 103, "start_aa": "Asn", "end_pos": 103, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn103", "evidence": [ { "id": "29741879", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/29741879" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "P11279", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P11279#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "12754519", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/12754519" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P11279-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 249, "start_aa": "Asn", "end_pos": 249, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn249", "evidence": [ { "id": "29741879", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/29741879" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "23345538", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23345538" }, { "id": "P11279", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P11279#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P11279-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 1107, "start_aa": "Asn", "end_pos": 1107, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn1107", "evidence": [ { "id": "P11047", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P11047#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P11047-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 1161, "start_aa": "Asn", "end_pos": 1161, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn1161", "evidence": [ { "id": "P11047", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P11047#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P11047-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 1175, "start_aa": "Asn", "end_pos": 1175, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn1175", "evidence": [ { "id": "P11047", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P11047#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P11047-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 1223, "start_aa": "Asn", "end_pos": 1223, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn1223", "evidence": [ { "id": "P11047", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P11047#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P11047-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 1395, "start_aa": "Asn", "end_pos": 1395, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn1395", "evidence": [ { "id": "P11047", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P11047#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P11047-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 183, "start_aa": "Asn", "end_pos": 183, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn183", "evidence": [ { "id": "Q99677", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q99677#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "Q99677-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "Complex", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) (complex) asparagine;Complex", "icn3d_view": {}, "start_pos": 118, "start_aa": "Asn", "end_pos": 118, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn118", "evidence": [ { "id": "P19823", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P19823#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "9425062", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/9425062" }, { "id": "12754519", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/12754519" }, { "id": "9677337", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/9677337" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.10000000000000.00.01001", "uniprot_canonical_ac": "P19823-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 445, "start_aa": "Asn", "end_pos": 445, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn445", "evidence": [ { "id": "P19823", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P19823#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P19823-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 262, "start_aa": "Asn", "end_pos": 262, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn262", "evidence": [ { "id": "P05154", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P05154#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "18467335", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/18467335" }, { "id": "12575940", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/12575940" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P05154-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=1LQ8&bu=0&command=select+.C:319;+center+selection;+zoom+selection" }, "start_pos": 338, "start_aa": "Asn", "end_pos": 338, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn338", "evidence": [ { "id": "P05154", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P05154#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "18467335", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/18467335" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "1LQ8", "database": "PDB", "url": "https://www.rcsb.org/structure/1LQ8" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P05154-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 298, "start_aa": "Asn", "end_pos": 298, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn298", "evidence": [ { "id": "O60938", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O60938#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "O60938-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=6UE7&bu=0&command=select+.C:403;+center+selection;+zoom+selection" }, "start_pos": 421, "start_aa": "Asn", "end_pos": 421, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn421", "evidence": [ { "id": "P01833", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P01833#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "6526384", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/6526384" }, { "id": "18780401", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/18780401" }, { "id": "16740002", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16740002" }, { "id": "15084671", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/15084671" }, { "id": "6UE7", "database": "PDB", "url": "https://www.rcsb.org/structure/6UE7" }, { "id": "6UE9", "database": "PDB", "url": "https://www.rcsb.org/structure/6UE9" }, { "id": "6UEA", "database": "PDB", "url": "https://www.rcsb.org/structure/6UEA" }, { "id": "8SKU", "database": "PDB", "url": "https://www.rcsb.org/structure/8SKU" }, { "id": "8SKV", "database": "PDB", "url": "https://www.rcsb.org/structure/8SKV" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "P01833-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "Complex", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) (complex) asparagine;Complex", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=6UE9&bu=0&command=select+.C:451;+center+selection;+zoom+selection" }, "start_pos": 469, "start_aa": "Asn", "end_pos": 469, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn469", "evidence": [ { "id": "P01833", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P01833#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "6526384", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/6526384" }, { "id": "18780401", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/18780401" }, { "id": "16740002", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16740002" }, { "id": "19139490", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19139490" }, { "id": "15084671", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/15084671" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "6UE9", "database": "PDB", "url": "https://www.rcsb.org/structure/6UE9" } ], "filter_code": "001000000000000000000.10000000000000.00.01001", "uniprot_canonical_ac": "P01833-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 90, "start_aa": "Asn", "end_pos": 90, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn90", "evidence": [ { "id": "P01833", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P01833#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "6526384", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/6526384" }, { "id": "18780401", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/18780401" }, { "id": "16740002", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16740002" }, { "id": "15084671", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/15084671" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P01833-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 253, "start_aa": "Asn", "end_pos": 253, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn253", "evidence": [ { "id": "P27169", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P27169#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "14760718", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/14760718" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P27169-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 324, "start_aa": "Asn", "end_pos": 324, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn324", "evidence": [ { "id": "P27169", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P27169#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "P27169-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 244, "start_aa": "Asn", "end_pos": 244, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn244", "evidence": [ { "id": "O00241", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O00241#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "Q5TFQ8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q5TFQ8#ptm_processing" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "O00241-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 599, "start_aa": "Asn", "end_pos": 599, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn599", "evidence": [ { "id": "Q15063", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q15063#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "Q15063-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "Complex", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) (complex) asparagine;Complex", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=2OAY&bu=0&command=select+.A:216;+center+selection;+zoom+selection" }, "start_pos": 238, "start_aa": "Asn", "end_pos": 238, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn238", "evidence": [ { "id": "P05155", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P05155#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "14760718", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/14760718" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "3756141", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/3756141" }, { "id": "19139490", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19139490" }, { "id": "17488724", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/17488724" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "2OAY", "database": "PDB", "url": "https://www.rcsb.org/structure/2OAY" }, { "id": "5DUQ", "database": "PDB", "url": "https://www.rcsb.org/structure/5DUQ" } ], "filter_code": "001000000000000000000.10000000000000.00.01001", "uniprot_canonical_ac": "P05155-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "Complex", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true, "automatic_literature_mining": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) (complex) asparagine;Complex", "icn3d_view": {}, "start_pos": 253, "start_aa": "Asn", "end_pos": 253, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn253", "evidence": [ { "id": "P05155", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P05155#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "14760718", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/14760718" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "12754519", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/12754519" }, { "id": "3756141", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/3756141" }, { "id": "19139490", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19139490" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "29427759", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/29427759" }, { "id": "GLY_000481", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000481" } ], "mining_tool": "RLIMS-G_1.0", "mining_tool_list": [ { "label": "RLIMS-G_1.0" } ], "filter_code": "001000000000000000000.10000000000000.00.01001", "uniprot_canonical_ac": "P05155-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "Complex", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) (complex) asparagine;Complex", "icn3d_view": {}, "start_pos": 25, "start_aa": "Asn", "end_pos": 25, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn25", "evidence": [ { "id": "P05155", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P05155#ptm_processing" }, { "id": "14760718", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/14760718" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "3756141", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/3756141" }, { "id": "16040958", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16040958" }, { "id": "22171320", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/22171320" } ], "filter_code": "001000000000000000000.10000000000000.00.01001", "uniprot_canonical_ac": "P05155-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "Complex", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) (complex) asparagine;Complex", "icn3d_view": {}, "start_pos": 352, "start_aa": "Asn", "end_pos": 352, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn352", "evidence": [ { "id": "P05155", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P05155#ptm_processing" }, { "id": "19838169", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19838169" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "14760718", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/14760718" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "3756141", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/3756141" }, { "id": "19139490", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19139490" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.10000000000000.00.01001", "uniprot_canonical_ac": "P05155-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 69, "start_aa": "Asn", "end_pos": 69, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn69", "evidence": [ { "id": "P05155", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P05155#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "3756141", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/3756141" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P05155-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 228, "start_aa": "Asn", "end_pos": 228, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn228", "evidence": [ { "id": "P22792", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P22792#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "P22792-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 518, "start_aa": "Asn", "end_pos": 518, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn518", "evidence": [ { "id": "P22792", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P22792#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "P22792-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "Complex", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) (complex) asparagine;Complex", "icn3d_view": {}, "start_pos": 189, "start_aa": "Asn", "end_pos": 189, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn189", "evidence": [ { "id": "O75636", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O75636#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "19139490", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19139490" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.10000000000000.00.01001", "uniprot_canonical_ac": "O75636-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 125, "start_aa": "Asn", "end_pos": 125, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn125", "evidence": [ { "id": "Q08380", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q08380#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "Q08380-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 192, "start_aa": "Asn", "end_pos": 192, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn192", "evidence": [ { "id": "Q08380", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q08380#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "Q08380-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true, "automatic_literature_mining": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 398, "start_aa": "Asn", "end_pos": 398, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn398", "evidence": [ { "id": "29741879", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/29741879" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "Q08380", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q08380#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "16740002", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16740002" }, { "id": "19139490", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19139490" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "38345243", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/38345243" }, { "id": "GLY_000481", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000481" } ], "mining_tool": "GlycoSiteMiner_1.0", "mining_tool_list": [ { "label": "GlycoSiteMiner_1.0" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "Q08380-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "Complex", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true, "automatic_literature_mining": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) (complex) asparagine;Complex", "icn3d_view": {}, "start_pos": 551, "start_aa": "Asn", "end_pos": 551, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn551", "evidence": [ { "id": "Q08380", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q08380#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "18780401", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/18780401" }, { "id": "16740002", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16740002" }, { "id": "19139490", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19139490" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "38345243", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/38345243" }, { "id": "GLY_000481", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000481" } ], "mining_tool": "GlycoSiteMiner_1.0", "mining_tool_list": [ { "label": "GlycoSiteMiner_1.0" } ], "filter_code": "001000000000000000000.10000000000000.00.01001", "uniprot_canonical_ac": "Q08380-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "Complex", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) (complex) asparagine;Complex", "icn3d_view": {}, "start_pos": 580, "start_aa": "Asn", "end_pos": 580, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn580", "evidence": [ { "id": "Q08380", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q08380#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "16740002", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16740002" }, { "id": "19139490", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19139490" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" } ], "filter_code": "001000000000000000000.10000000000000.00.01001", "uniprot_canonical_ac": "Q08380-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "Complex", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) (complex) asparagine;Complex", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=1BY2&bu=0&command=select+.A:51;+center+selection;+zoom+selection" }, "start_pos": 69, "start_aa": "Asn", "end_pos": 69, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn69", "evidence": [ { "id": "Q08380", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q08380#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "9501082", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/9501082" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "18780401", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/18780401" }, { "id": "16740002", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16740002" }, { "id": "19139490", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19139490" }, { "id": "15084671", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/15084671" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "1BY2", "database": "PDB", "url": "https://www.rcsb.org/structure/1BY2" } ], "filter_code": "001000000000000000000.10000000000000.00.01001", "uniprot_canonical_ac": "Q08380-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=3FCS&bu=0&command=select+.C:570;+center+selection;+zoom+selection" }, "start_pos": 601, "start_aa": "Asn", "end_pos": 601, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn601", "evidence": [ { "id": "P08514", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P08514#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "2775232", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/2775232" }, { "id": "3FCS", "database": "PDB", "url": "https://www.rcsb.org/sequence/3FCS" }, { "id": "19111664", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19111664" }, { "id": "4CAK", "database": "PDB", "url": "https://www.rcsb.org/structure/4CAK" }, { "id": "8GCD", "database": "PDB", "url": "https://www.rcsb.org/structure/8GCD" }, { "id": "8GCE", "database": "PDB", "url": "https://www.rcsb.org/structure/8GCE" }, { "id": "8T2V", "database": "PDB", "url": "https://www.rcsb.org/structure/8T2V" }, { "id": "9DEQ", "database": "PDB", "url": "https://www.rcsb.org/structure/9DEQ" }, { "id": "9TD2", "database": "PDB", "url": "https://www.rcsb.org/structure/9TD2" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "P08514-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 227, "start_aa": "Asn", "end_pos": 227, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn227", "evidence": [ { "id": "P01860", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P01860#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "11406581", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/11406581" }, { "id": "20357243", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/20357243" }, { "id": "26536155", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/26536155" }, { "id": "29445378", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/29445378" }, { "id": "39983994", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/39983994" }, { "id": "20176268", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/20176268" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "P01860-2" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 225, "start_aa": "Asn", "end_pos": 225, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn225", "evidence": [ { "id": "P01880", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P01880#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "6785754", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/6785754" }, { "id": "6619128", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/6619128" }, { "id": "7008791", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/7008791" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "P01880-2" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 316, "start_aa": "Asn", "end_pos": 316, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn316", "evidence": [ { "id": "P01880", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P01880#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "6785754", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/6785754" }, { "id": "6619128", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/6619128" }, { "id": "7008791", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/7008791" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "P01880-2" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 101, "start_aa": "Asn", "end_pos": 101, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn101", "evidence": [ { "id": "29741879", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/29741879" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "P13473", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P13473#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "12754519", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/12754519" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "P13473-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 123, "start_aa": "Asn", "end_pos": 123, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn123", "evidence": [ { "id": "29741879", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/29741879" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "P13473", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P13473#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P13473-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 257, "start_aa": "Asn", "end_pos": 257, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn257", "evidence": [ { "id": "P13473", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P13473#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P13473-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 32, "start_aa": "Asn", "end_pos": 32, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn32", "evidence": [ { "id": "29741879", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/29741879" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "P13473", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P13473#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P13473-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 38, "start_aa": "Asn", "end_pos": 38, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn38", "evidence": [ { "id": "29741879", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/29741879" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "P13473", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P13473#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "P13473-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 49, "start_aa": "Asn", "end_pos": 49, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn49", "evidence": [ { "id": "29741879", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/29741879" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "P13473", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P13473#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "12754519", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/12754519" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "P13473-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "Complex", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) (complex) asparagine;Complex", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=3DEM&bu=0&command=select+.A:159;+center+selection;+zoom+selection" }, "start_pos": 178, "start_aa": "Asn", "end_pos": 178, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn178", "evidence": [ { "id": "P48740", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P48740#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "18596036", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/18596036" }, { "id": "19139490", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19139490" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "3DEM", "database": "PDB", "url": "https://www.rcsb.org/structure/3DEM" } ], "filter_code": "001000000000000000000.10000000000000.00.01001", "uniprot_canonical_ac": "P48740-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "Complex", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) (complex) asparagine;Complex", "icn3d_view": {}, "start_pos": 385, "start_aa": "Asn", "end_pos": 385, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn385", "evidence": [ { "id": "P48740", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P48740#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "19139490", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19139490" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.10000000000000.00.01001", "uniprot_canonical_ac": "P48740-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 407, "start_aa": "Asn", "end_pos": 407, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn407", "evidence": [ { "id": "P48740", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P48740#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "11290788", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/11290788" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "P48740-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 49, "start_aa": "Asn", "end_pos": 49, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn49", "evidence": [ { "id": "P48740", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P48740#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "11290788", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/11290788" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P48740-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 136, "start_aa": "Asn", "end_pos": 136, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn136", "evidence": [ { "id": "Q9UEW3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9UEW3#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "Q9UEW3-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "Complex", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) (complex) asparagine;Complex", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=5EOD&bu=0&command=select+.A:108;+center+selection;+zoom+selection" }, "start_pos": 126, "start_aa": "Asn", "end_pos": 126, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn126", "evidence": [ { "id": "P03951", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P03951#ptm_processing" }, { "id": "25092234", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/25092234" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "5EOD", "database": "PDB", "url": "https://www.rcsb.org/structure/5EOD" }, { "id": "7QOT", "database": "PDB", "url": "https://www.rcsb.org/structure/7QOT" } ], "filter_code": "001000000000000000000.10000000000000.00.01000", "uniprot_canonical_ac": "P03951-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "Complex", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) (complex) asparagine;Complex", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=4X6P&bu=0&command=select+.B:72;+center+selection;+zoom+selection" }, "start_pos": 450, "start_aa": "Asn", "end_pos": 450, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn450", "evidence": [ { "id": "P03951", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P03951#ptm_processing" }, { "id": "25092234", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/25092234" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "4X6P", "database": "PDB", "url": "https://www.rcsb.org/structure/4X6P" }, { "id": "5EOD", "database": "PDB", "url": "https://www.rcsb.org/structure/5EOD" }, { "id": "5EOK", "database": "PDB", "url": "https://www.rcsb.org/structure/5EOK" }, { "id": "6I58", "database": "PDB", "url": "https://www.rcsb.org/structure/6I58" } ], "filter_code": "001000000000000000000.10000000000000.00.01000", "uniprot_canonical_ac": "P03951-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=1XX9&bu=0&command=select+.A:113;+center+selection;+zoom+selection" }, "start_pos": 491, "start_aa": "Asn", "end_pos": 491, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn491", "evidence": [ { "id": "25092234", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/25092234" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "P03951", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P03951#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "1998667", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/1998667" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "1XX9", "database": "PDB", "url": "https://www.rcsb.org/structure/1XX9" }, { "id": "5EOK", "database": "PDB", "url": "https://www.rcsb.org/structure/5EOK" }, { "id": "5EXN", "database": "PDB", "url": "https://www.rcsb.org/structure/5EXN" }, { "id": "7MBO", "database": "PDB", "url": "https://www.rcsb.org/structure/7MBO" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P03951-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 601, "start_aa": "Asn", "end_pos": 601, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn601", "evidence": [ { "id": "P00451", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P00451#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P00451-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 103, "start_aa": "Asn", "end_pos": 103, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn103", "evidence": [ { "id": "P19652", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P19652#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "1567356", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/1567356" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "P19652-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 33, "start_aa": "Asn", "end_pos": 33, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn33", "evidence": [ { "id": "19838169", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19838169" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "P19652", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P19652#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "14760718", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/14760718" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "15253437", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/15253437" }, { "id": "1567356", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/1567356" }, { "id": "15084671", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/15084671" }, { "id": "22171320", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/22171320" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P19652-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 56, "start_aa": "Asn", "end_pos": 56, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn56", "evidence": [ { "id": "P19652", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P19652#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "14760718", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/14760718" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "1567356", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/1567356" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P19652-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 72, "start_aa": "Asn", "end_pos": 72, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn72", "evidence": [ { "id": "P19652", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P19652#ptm_processing" }, { "id": "14760718", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/14760718" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "1567356", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/1567356" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P19652-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 93, "start_aa": "Asn", "end_pos": 93, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn93", "evidence": [ { "id": "P19652", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P19652#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "14760718", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/14760718" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "15253437", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/15253437" }, { "id": "1567356", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/1567356" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "P19652-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 38, "start_aa": "Asn", "end_pos": 38, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn38", "evidence": [ { "id": "P01019", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P01019#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "3934016", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/3934016" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P01019-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 296, "start_aa": "Asn", "end_pos": 296, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn296", "evidence": [ { "id": "P11362", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P11362#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P11362-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 249, "start_aa": "Asn", "end_pos": 249, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn249", "evidence": [ { "id": "Q9HBW9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9HBW9#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "Q9HBW9-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=8H24&bu=0&command=select+.A:186;+center+selection;+zoom+selection" }, "start_pos": 186, "start_aa": "Asn", "end_pos": 186, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn186", "evidence": [ { "id": "24279413", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24279413" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "19838169", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19838169" }, { "id": "P02750", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P02750#ptm_processing" }, { "id": "14760718", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/14760718" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "18780401", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/18780401" }, { "id": "16740002", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16740002" }, { "id": "19139490", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19139490" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "8H24", "database": "PDB", "url": "https://www.rcsb.org/structure/8H24" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P02750-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=8H24&bu=0&command=select+.A:269;+center+selection;+zoom+selection" }, "start_pos": 269, "start_aa": "Asn", "end_pos": 269, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn269", "evidence": [ { "id": "P02750", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P02750#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "8H24", "database": "PDB", "url": "https://www.rcsb.org/structure/8H24" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P02750-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "Complex", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) (complex) asparagine;Complex", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=8H24&bu=0&command=select+.A:325;+center+selection;+zoom+selection" }, "start_pos": 325, "start_aa": "Asn", "end_pos": 325, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn325", "evidence": [ { "id": "P02750", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P02750#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "19139490", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19139490" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "8H24", "database": "PDB", "url": "https://www.rcsb.org/structure/8H24" } ], "filter_code": "001000000000000000000.10000000000000.00.01000", "uniprot_canonical_ac": "P02750-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 256, "start_aa": "Asn", "end_pos": 256, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn256", "evidence": [ { "id": "Q8IZF2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8IZF2#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "Q8IZF2-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 315, "start_aa": "Asn", "end_pos": 315, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn315", "evidence": [ { "id": "Q8IZF2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q8IZF2#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "Q8IZF2-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=8A6L&bu=0&command=select+.A:381;+center+selection;+zoom+selection" }, "start_pos": 280, "start_aa": "Asn", "end_pos": 280, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn280", "evidence": [ { "id": "P08195", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P08195#ptm_processing" }, { "id": "19349973", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19349973" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "12754519", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/12754519" }, { "id": "7P9V", "database": "PDB", "url": "https://www.rcsb.org/sequence/7P9V" }, { "id": "7EPZ", "database": "PDB", "url": "https://www.rcsb.org/sequence/7EPZ" }, { "id": "34880232", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/34880232" }, { "id": "35352032", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/35352032" }, { "id": "30867591", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/30867591" }, { "id": "6IRS", "database": "PDB", "url": "https://www.rcsb.org/sequence/6IRS" }, { "id": "7CMI", "database": "PDB", "url": "https://www.rcsb.org/sequence/7CMI" }, { "id": "7DSK", "database": "PDB", "url": "https://www.rcsb.org/sequence/7DSK" }, { "id": "33758168", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/33758168" }, { "id": "33298890", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/33298890" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "8A6L", "database": "PDB", "url": "https://www.rcsb.org/structure/8A6L" }, { "id": "8KDD", "database": "PDB", "url": "https://www.rcsb.org/structure/8KDD" }, { "id": "8KDI", "database": "PDB", "url": "https://www.rcsb.org/structure/8KDI" }, { "id": "8KDG", "database": "PDB", "url": "https://www.rcsb.org/structure/8KDG" }, { "id": "8WNS", "database": "PDB", "url": "https://www.rcsb.org/structure/8WNS" }, { "id": "8WNY", "database": "PDB", "url": "https://www.rcsb.org/structure/8WNY" } ], "filter_code": "001000000000000000000.00010000000000.00.01101", "uniprot_canonical_ac": "P08195-2" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "Complex", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) (complex) asparagine;Complex", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=6JMQ&bu=0&command=select+.B:424;+center+selection;+zoom+selection" }, "start_pos": 323, "start_aa": "Asn", "end_pos": 323, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn323", "evidence": [ { "id": "P08195", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P08195#ptm_processing" }, { "id": "6IRS", "database": "PDB", "url": "https://www.rcsb.org/sequence/6IRS" }, { "id": "34880232", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/34880232" }, { "id": "33758168", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/33758168" }, { "id": "12754519", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/12754519" }, { "id": "7CMI", "database": "PDB", "url": "https://www.rcsb.org/sequence/7CMI" }, { "id": "30867591", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/30867591" }, { "id": "19349973", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19349973" }, { "id": "35352032", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/35352032" }, { "id": "7DSK", "database": "PDB", "url": "https://www.rcsb.org/sequence/7DSK" }, { "id": "7P9V", "database": "PDB", "url": "https://www.rcsb.org/sequence/7P9V" }, { "id": "33298890", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/33298890" }, { "id": "7EPZ", "database": "PDB", "url": "https://www.rcsb.org/sequence/7EPZ" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "19139490", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19139490" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "6JMQ", "database": "PDB", "url": "https://www.rcsb.org/structure/6JMQ" }, { "id": "6JMR", "database": "PDB", "url": "https://www.rcsb.org/structure/6JMR" }, { "id": "8A6L", "database": "PDB", "url": "https://www.rcsb.org/structure/8A6L" }, { "id": "8KDD", "database": "PDB", "url": "https://www.rcsb.org/structure/8KDD" }, { "id": "8KDI", "database": "PDB", "url": "https://www.rcsb.org/structure/8KDI" }, { "id": "8KDG", "database": "PDB", "url": "https://www.rcsb.org/structure/8KDG" }, { "id": "8WNS", "database": "PDB", "url": "https://www.rcsb.org/structure/8WNS" }, { "id": "8WNT", "database": "PDB", "url": "https://www.rcsb.org/structure/8WNT" }, { "id": "8WNY", "database": "PDB", "url": "https://www.rcsb.org/structure/8WNY" } ], "filter_code": "001000000000000000000.10000000000000.00.01100", "uniprot_canonical_ac": "P08195-2" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 98, "start_aa": "Asn", "end_pos": 98, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn98", "evidence": [ { "id": "19838169", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19838169" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "P05090", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P05090#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "7918467", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/7918467" }, { "id": "14760718", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/14760718" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "7613477", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/7613477" }, { "id": "19139490", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19139490" }, { "id": "22171320", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/22171320" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P05090-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 160, "start_aa": "Asn", "end_pos": 160, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn160", "evidence": [ { "id": "29741879", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/29741879" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "24721674", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24721674" }, { "id": "Q9HDC9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9HDC9#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "12754519", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/12754519" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "Q9HDC9-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true, "automatic_literature_mining": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 196, "start_aa": "Asn", "end_pos": 196, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn196", "evidence": [ { "id": "29741879", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/29741879" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "Q9HDC9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9HDC9#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "12754519", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/12754519" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "25628020", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/25628020" }, { "id": "GLY_000481", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000481" } ], "mining_tool": "GlycoSiteMiner_1.0", "mining_tool_list": [ { "label": "GlycoSiteMiner_1.0" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "Q9HDC9-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=1QUB&bu=0&command=select+.A:143;+center+selection;+zoom+selection" }, "start_pos": 162, "start_aa": "Asn", "end_pos": 162, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn162", "evidence": [ { "id": "19838169", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19838169" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "P02749", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P02749#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "14760718", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/14760718" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "6587378", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/6587378" }, { "id": "16740002", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16740002" }, { "id": "19139490", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19139490" }, { "id": "15084671", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/15084671" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "1QUB", "database": "PDB", "url": "https://www.rcsb.org/structure/1QUB" }, { "id": "6V09", "database": "PDB", "url": "https://www.rcsb.org/structure/6V09" }, { "id": "6XSD", "database": "PDB", "url": "https://www.rcsb.org/structure/6XSD" }, { "id": "6XST", "database": "PDB", "url": "https://www.rcsb.org/structure/6XST" }, { "id": "7KG4", "database": "PDB", "url": "https://www.rcsb.org/structure/7KG4" }, { "id": "7JIK", "database": "PDB", "url": "https://www.rcsb.org/structure/7JIK" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P02749-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=1C1Z&bu=0&command=select+.A:164;+center+selection;+zoom+selection" }, "start_pos": 183, "start_aa": "Asn", "end_pos": 183, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn183", "evidence": [ { "id": "P02749", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P02749#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "14760718", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/14760718" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "6587378", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/6587378" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "1C1Z", "database": "PDB", "url": "https://www.rcsb.org/structure/1C1Z" }, { "id": "1QUB", "database": "PDB", "url": "https://www.rcsb.org/structure/1QUB" }, { "id": "6V09", "database": "PDB", "url": "https://www.rcsb.org/structure/6V09" }, { "id": "6XSD", "database": "PDB", "url": "https://www.rcsb.org/structure/6XSD" }, { "id": "6XST", "database": "PDB", "url": "https://www.rcsb.org/structure/6XST" }, { "id": "7KG4", "database": "PDB", "url": "https://www.rcsb.org/structure/7KG4" }, { "id": "7JIK", "database": "PDB", "url": "https://www.rcsb.org/structure/7JIK" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P02749-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 193, "start_aa": "Asn", "end_pos": 193, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn193", "evidence": [ { "id": "P02749", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P02749#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "14760718", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/14760718" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "6587378", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/6587378" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P02749-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 253, "start_aa": "Asn", "end_pos": 253, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn253", "evidence": [ { "id": "24279413", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24279413" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "P02749", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P02749#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "6587378", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/6587378" }, { "id": "16740002", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16740002" }, { "id": "15084671", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/15084671" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P02749-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 63, "start_aa": "Asn", "end_pos": 63, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn63", "evidence": [ { "id": "P55056", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P55056#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "P55056-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 368, "start_aa": "Asn", "end_pos": 368, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn368", "evidence": [ { "id": "P35858", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P35858#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "P35858-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=7WRQ&bu=0&command=select+.A:515;+center+selection;+zoom+selection" }, "start_pos": 515, "start_aa": "Asn", "end_pos": 515, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn515", "evidence": [ { "id": "P35858", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P35858#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "7WRQ", "database": "PDB", "url": "https://www.rcsb.org/structure/7WRQ" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P35858-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 657, "start_aa": "Asn", "end_pos": 657, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn657", "evidence": [ { "id": "P01130", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P01130#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "12754519", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/12754519" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P01130-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 607, "start_aa": "Asn", "end_pos": 607, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn607", "evidence": [ { "id": "Q07075", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q07075#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "Q07075-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true, "automatic_literature_mining": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=11QC&bu=0&command=select+.B:251;+center+selection;+zoom+selection" }, "start_pos": 251, "start_aa": "Asn", "end_pos": 251, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn251", "evidence": [ { "id": "P02786", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P02786#ptm_processing" }, { "id": "19349973", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19349973" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "10531064", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/10531064" }, { "id": "1CX8", "database": "PDB", "url": "https://www.rcsb.org/sequence/1CX8" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "9136890", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/9136890" }, { "id": "GLY_000481", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000481" }, { "id": "16716077", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16716077" }, { "id": "8509412", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/8509412" }, { "id": "11QC", "database": "PDB", "url": "https://www.rcsb.org/structure/11QC" }, { "id": "11RN", "database": "PDB", "url": "https://www.rcsb.org/structure/11RN" }, { "id": "3KAS", "database": "PDB", "url": "https://www.rcsb.org/structure/3KAS" }, { "id": "6D03", "database": "PDB", "url": "https://www.rcsb.org/structure/6D03" }, { "id": "6D04", "database": "PDB", "url": "https://www.rcsb.org/structure/6D04" }, { "id": "6D05", "database": "PDB", "url": "https://www.rcsb.org/structure/6D05" }, { "id": "6OKD", "database": "PDB", "url": "https://www.rcsb.org/structure/6OKD" }, { "id": "6WRX", "database": "PDB", "url": "https://www.rcsb.org/structure/6WRX" }, { "id": "7ZQS", "database": "PDB", "url": "https://www.rcsb.org/structure/7ZQS" } ], "mining_tool": "GlycoSiteMiner_1.0", "mining_tool_list": [ { "label": "GlycoSiteMiner_1.0" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P02786-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=3VI3&bu=0&command=select+.D:386;+center+selection;+zoom+selection" }, "start_pos": 406, "start_aa": "Asn", "end_pos": 406, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn406", "evidence": [ { "id": "29741879", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/29741879" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "P05556", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P05556#ptm_processing" }, { "id": "19349973", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19349973" }, { "id": "22451694", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/22451694" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "33962943", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/33962943" }, { "id": "3VI4", "database": "PDB", "url": "https://www.rcsb.org/sequence/3VI4" }, { "id": "7NXD", "database": "PDB", "url": "https://www.rcsb.org/sequence/7NXD" }, { "id": "3VI3", "database": "PDB", "url": "https://www.rcsb.org/sequence/3VI3" }, { "id": "7NWL", "database": "PDB", "url": "https://www.rcsb.org/sequence/7NWL" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "7CEB", "database": "PDB", "url": "https://www.rcsb.org/structure/7CEB" }, { "id": "7CEC", "database": "PDB", "url": "https://www.rcsb.org/structure/7CEC" }, { "id": "8W30", "database": "PDB", "url": "https://www.rcsb.org/structure/8W30" }, { "id": "9CKV", "database": "PDB", "url": "https://www.rcsb.org/structure/9CKV" }, { "id": "9DIA", "database": "PDB", "url": "https://www.rcsb.org/structure/9DIA" }, { "id": "9P6S", "database": "PDB", "url": "https://www.rcsb.org/structure/9P6S" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P05556-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true, "automatic_literature_mining": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=4WJG&bu=0&command=select+.W:180;+center+selection;+zoom+selection" }, "start_pos": 184, "start_aa": "Asn", "end_pos": 184, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn184", "evidence": [ { "id": "18214858", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/18214858" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "24279413", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24279413" }, { "id": "P00738", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P00738#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "14760718", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/14760718" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "19139490", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19139490" }, { "id": "17803183", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/17803183" }, { "id": "GLY_000481", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000481" }, { "id": "26869352", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/26869352" }, { "id": "32412768", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/32412768" }, { "id": "31014754", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/31014754" }, { "id": "35811936", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/35811936" }, { "id": "30370771", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/30370771" }, { "id": "4WJG", "database": "PDB", "url": "https://www.rcsb.org/structure/4WJG" }, { "id": "5HU6", "database": "PDB", "url": "https://www.rcsb.org/structure/5HU6" }, { "id": "8XMP", "database": "PDB", "url": "https://www.rcsb.org/structure/8XMP" }, { "id": "8XMQ", "database": "PDB", "url": "https://www.rcsb.org/structure/8XMQ" }, { "id": "8XMW", "database": "PDB", "url": "https://www.rcsb.org/structure/8XMW" }, { "id": "9FHB", "database": "PDB", "url": "https://www.rcsb.org/structure/9FHB" }, { "id": "9FMU", "database": "PDB", "url": "https://www.rcsb.org/structure/9FMU" }, { "id": "9FNO", "database": "PDB", "url": "https://www.rcsb.org/structure/9FNO" } ], "mining_tool": "GlycoSiteMiner_1.0", "mining_tool_list": [ { "label": "GlycoSiteMiner_1.0" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P00738-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true, "automatic_literature_mining": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=4WJG&bu=0&command=select+.W:203;+center+selection;+zoom+selection" }, "start_pos": 207, "start_aa": "Asn", "end_pos": 207, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn207", "evidence": [ { "id": "18214858", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/18214858" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "P00738", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P00738#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "14760718", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/14760718" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "12754519", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/12754519" }, { "id": "16740002", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16740002" }, { "id": "17803183", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/17803183" }, { "id": "GLY_000481", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000481" }, { "id": "26869352", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/26869352" }, { "id": "29580922", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/29580922" }, { "id": "34207451", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/34207451" }, { "id": "31014754", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/31014754" }, { "id": "19714880", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19714880" }, { "id": "34436504", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/34436504" }, { "id": "31737099", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/31737099" }, { "id": "4WJG", "database": "PDB", "url": "https://www.rcsb.org/structure/4WJG" }, { "id": "9FNO", "database": "PDB", "url": "https://www.rcsb.org/structure/9FNO" } ], "mining_tool": "GlycoSiteMiner_1.0", "mining_tool_list": [ { "label": "GlycoSiteMiner_1.0" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P00738-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true, "automatic_literature_mining": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=4WJG&bu=0&command=select+.R:207;+center+selection;+zoom+selection" }, "start_pos": 211, "start_aa": "Asn", "end_pos": 211, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn211", "evidence": [ { "id": "18214858", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/18214858" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "P00738", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P00738#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "14760718", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/14760718" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "16740002", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16740002" }, { "id": "17803183", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/17803183" }, { "id": "GLY_000481", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000481" }, { "id": "26869352", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/26869352" }, { "id": "29580922", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/29580922" }, { "id": "34207451", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/34207451" }, { "id": "31014754", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/31014754" }, { "id": "19714880", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19714880" }, { "id": "4WJG", "database": "PDB", "url": "https://www.rcsb.org/structure/4WJG" } ], "mining_tool": "GlycoSiteMiner_1.0", "mining_tool_list": [ { "label": "GlycoSiteMiner_1.0" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P00738-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true, "automatic_literature_mining": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=5HU6&bu=0&command=select+.C:241;+center+selection;+zoom+selection" }, "start_pos": 241, "start_aa": "Asn", "end_pos": 241, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn241", "evidence": [ { "id": "18214858", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/18214858" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "24279413", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24279413" }, { "id": "29741879", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/29741879" }, { "id": "P00738", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P00738#ptm_processing" }, { "id": "19838169", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19838169" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "14760718", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/14760718" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "12754519", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/12754519" }, { "id": "19139490", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19139490" }, { "id": "17803183", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/17803183" }, { "id": "GLY_000481", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000481" }, { "id": "21692080", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/21692080" }, { "id": "21780104", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/21780104" }, { "id": "26869352", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/26869352" }, { "id": "32412768", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/32412768" }, { "id": "34207451", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/34207451" }, { "id": "35811936", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/35811936" }, { "id": "36324280", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/36324280" }, { "id": "19714880", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19714880" }, { "id": "30370771", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/30370771" }, { "id": "5HU6", "database": "PDB", "url": "https://www.rcsb.org/structure/5HU6" }, { "id": "8XMP", "database": "PDB", "url": "https://www.rcsb.org/structure/8XMP" }, { "id": "8XMQ", "database": "PDB", "url": "https://www.rcsb.org/structure/8XMQ" }, { "id": "8XMW", "database": "PDB", "url": "https://www.rcsb.org/structure/8XMW" }, { "id": "9FHB", "database": "PDB", "url": "https://www.rcsb.org/structure/9FHB" }, { "id": "9FMU", "database": "PDB", "url": "https://www.rcsb.org/structure/9FMU" }, { "id": "9FNM", "database": "PDB", "url": "https://www.rcsb.org/structure/9FNM" }, { "id": "9FNO", "database": "PDB", "url": "https://www.rcsb.org/structure/9FNO" }, { "id": "9HEJ", "database": "PDB", "url": "https://www.rcsb.org/structure/9HEJ" }, { "id": "9HEK", "database": "PDB", "url": "https://www.rcsb.org/structure/9HEK" } ], "mining_tool": "GlycoSiteMiner_1.0", "mining_tool_list": [ { "label": "GlycoSiteMiner_1.0" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P00738-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 75, "start_aa": "Asn", "end_pos": 75, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn75", "evidence": [ { "id": "Q5VTT2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q5VTT2#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "Q5VTT2-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=9GTU&bu=0&command=select+.C:2677;+center+selection;+zoom+selection" }, "start_pos": 2677, "start_aa": "Asn", "end_pos": 2677, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn2677", "evidence": [ { "id": "P12111", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P12111#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "9GTU", "database": "PDB", "url": "https://www.rcsb.org/structure/9GTU" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P12111-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=6H04&bu=0&command=select+.D:202;+center+selection;+zoom+selection" }, "start_pos": 202, "start_aa": "Asn", "end_pos": 202, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn202", "evidence": [ { "id": "P10643", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P10643#ptm_processing" }, { "id": "14760718", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/14760718" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "6H04", "database": "PDB", "url": "https://www.rcsb.org/structure/6H04" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P10643-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "Complex", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) (complex) asparagine;Complex", "icn3d_view": {}, "start_pos": 754, "start_aa": "Asn", "end_pos": 754, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn754", "evidence": [ { "id": "P10643", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P10643#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "19139490", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19139490" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.10000000000000.00.01001", "uniprot_canonical_ac": "P10643-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 243, "start_aa": "Asn", "end_pos": 243, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn243", "evidence": [ { "id": "P07358", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P07358#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "30552328", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/30552328" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P07358-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=6M3B&bu=0&command=select+.A:93;+center+selection;+zoom+selection" }, "start_pos": 290, "start_aa": "Asn", "end_pos": 290, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn290", "evidence": [ { "id": "19343721", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19343721" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "P04070", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P04070#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "2991887", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/2991887" }, { "id": "6M3B", "database": "PDB", "url": "https://www.rcsb.org/structure/6M3B" }, { "id": "9MOT", "database": "PDB", "url": "https://www.rcsb.org/structure/9MOT" }, { "id": "9MOV", "database": "PDB", "url": "https://www.rcsb.org/structure/9MOV" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P04070-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=6SAZ&bu=0&command=select+.D:136;+center+selection;+zoom+selection" }, "start_pos": 136, "start_aa": "Asn", "end_pos": 136, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn136", "evidence": [ { "id": "Q9UGM5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9UGM5#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "6SAZ", "database": "PDB", "url": "https://www.rcsb.org/structure/6SAZ" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "Q9UGM5-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 37, "start_aa": "Asn", "end_pos": 37, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn37", "evidence": [ { "id": "Q9UGM5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9UGM5#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "Q9UGM5-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 342, "start_aa": "Asn", "end_pos": 342, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn342", "evidence": [ { "id": "Q12913", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q12913#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "Q12913-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 351, "start_aa": "Asn", "end_pos": 351, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn351", "evidence": [ { "id": "Q12913", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q12913#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "Q12913-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 391, "start_aa": "Asn", "end_pos": 391, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn391", "evidence": [ { "id": "Q12913", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q12913#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "Q12913-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 396, "start_aa": "Asn", "end_pos": 396, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn396", "evidence": [ { "id": "Q12913", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q12913#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "Q12913-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=1IMV&bu=0&command=select+.A:265;+center+selection;+zoom+selection" }, "start_pos": 285, "start_aa": "Asn", "end_pos": 285, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn285", "evidence": [ { "id": "24279413", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24279413" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "P36955", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P36955#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "11562499", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/11562499" }, { "id": "19139490", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19139490" }, { "id": "1IMV", "database": "PDB", "url": "https://www.rcsb.org/structure/1IMV" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "P36955-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 150, "start_aa": "Asn", "end_pos": 150, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn150", "evidence": [ { "id": "O14786", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O14786#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "17989695", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/17989695" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "O14786-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=1FZC&bu=0&command=select+.E:364;+center+selection;+zoom+selection" }, "start_pos": 394, "start_aa": "Asn", "end_pos": 394, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn394", "evidence": [ { "id": "P02675", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P02675#ptm_processing" }, { "id": "10074346", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/10074346" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "9628725", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/9628725" }, { "id": "16263699", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16263699" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "1FZC", "database": "PDB", "url": "https://www.rcsb.org/structure/1FZC" }, { "id": "1LT9", "database": "PDB", "url": "https://www.rcsb.org/structure/1LT9" }, { "id": "1RE4", "database": "PDB", "url": "https://www.rcsb.org/structure/1RE4" }, { "id": "1RF0", "database": "PDB", "url": "https://www.rcsb.org/structure/1RF0" }, { "id": "2HOD", "database": "PDB", "url": "https://www.rcsb.org/structure/2HOD" }, { "id": "2HPC", "database": "PDB", "url": "https://www.rcsb.org/structure/2HPC" }, { "id": "2Z4E", "database": "PDB", "url": "https://www.rcsb.org/structure/2Z4E" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "P02675-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 2075, "start_aa": "Asn", "end_pos": 2075, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn2075", "evidence": [ { "id": "Q6UVK1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q6UVK1#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "Q6UVK1-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 1559, "start_aa": "Asn", "end_pos": 1559, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn1559", "evidence": [ { "id": "P12259", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P12259#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P12259-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=8TN9&bu=0&command=select+.A:269;+center+selection;+zoom+selection" }, "start_pos": 297, "start_aa": "Asn", "end_pos": 297, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn297", "evidence": [ { "id": "P12259", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P12259#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "16263699", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16263699" }, { "id": "8TN9", "database": "PDB", "url": "https://www.rcsb.org/structure/8TN9" }, { "id": "9CTH", "database": "PDB", "url": "https://www.rcsb.org/structure/9CTH" }, { "id": "9MOT", "database": "PDB", "url": "https://www.rcsb.org/structure/9MOT" }, { "id": "9MOV", "database": "PDB", "url": "https://www.rcsb.org/structure/9MOV" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "P12259-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=9MOT&bu=0&command=select+.A:432;+center+selection;+zoom+selection" }, "start_pos": 460, "start_aa": "Asn", "end_pos": 460, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn460", "evidence": [ { "id": "P12259", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P12259#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "9MOT", "database": "PDB", "url": "https://www.rcsb.org/structure/9MOT" }, { "id": "9MOV", "database": "PDB", "url": "https://www.rcsb.org/structure/9MOV" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P12259-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 821, "start_aa": "Asn", "end_pos": 821, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn821", "evidence": [ { "id": "P12259", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P12259#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P12259-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 977, "start_aa": "Asn", "end_pos": 977, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn977", "evidence": [ { "id": "P12259", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P12259#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P12259-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=1TYE&bu=0&command=select+.F:99;+center+selection;+zoom+selection" }, "start_pos": 125, "start_aa": "Asn", "end_pos": 125, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn125", "evidence": [ { "id": "P05106", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P05106#ptm_processing" }, { "id": "19704023", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19704023" }, { "id": "16263699", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16263699" }, { "id": "1TYE", "database": "PDB", "url": "https://www.rcsb.org/sequence/1TYE" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "3IJE", "database": "PDB", "url": "https://www.rcsb.org/sequence/3IJE" }, { "id": "19111664", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19111664" }, { "id": "15378069", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/15378069" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "2VC2", "database": "PDB", "url": "https://www.rcsb.org/structure/2VC2" }, { "id": "2VDK", "database": "PDB", "url": "https://www.rcsb.org/structure/2VDK" }, { "id": "2VDL", "database": "PDB", "url": "https://www.rcsb.org/structure/2VDL" }, { "id": "2VDM", "database": "PDB", "url": "https://www.rcsb.org/structure/2VDM" }, { "id": "2VDN", "database": "PDB", "url": "https://www.rcsb.org/structure/2VDN" }, { "id": "2VDO", "database": "PDB", "url": "https://www.rcsb.org/structure/2VDO" }, { "id": "2VDP", "database": "PDB", "url": "https://www.rcsb.org/structure/2VDP" }, { "id": "2VDQ", "database": "PDB", "url": "https://www.rcsb.org/structure/2VDQ" }, { "id": "2VDR", "database": "PDB", "url": "https://www.rcsb.org/structure/2VDR" }, { "id": "3FCS", "database": "PDB", "url": "https://www.rcsb.org/structure/3FCS" }, { "id": "3FCU", "database": "PDB", "url": "https://www.rcsb.org/structure/3FCU" }, { "id": "3NID", "database": "PDB", "url": "https://www.rcsb.org/structure/3NID" }, { "id": "3NIF", "database": "PDB", "url": "https://www.rcsb.org/structure/3NIF" }, { "id": "3NIG", "database": "PDB", "url": "https://www.rcsb.org/structure/3NIG" }, { "id": "3T3M", "database": "PDB", "url": "https://www.rcsb.org/structure/3T3M" }, { "id": "3T3P", "database": "PDB", "url": "https://www.rcsb.org/structure/3T3P" }, { "id": "3ZDX", "database": "PDB", "url": "https://www.rcsb.org/structure/3ZDX" }, { "id": "3ZDY", "database": "PDB", "url": "https://www.rcsb.org/structure/3ZDY" }, { "id": "3ZDZ", "database": "PDB", "url": "https://www.rcsb.org/structure/3ZDZ" }, { "id": "3ZE0", "database": "PDB", "url": "https://www.rcsb.org/structure/3ZE0" }, { "id": "3ZE1", "database": "PDB", "url": "https://www.rcsb.org/structure/3ZE1" }, { "id": "4G1M", "database": "PDB", "url": "https://www.rcsb.org/structure/4G1M" }, { "id": "4MMX", "database": "PDB", "url": "https://www.rcsb.org/structure/4MMX" }, { "id": "4MMY", "database": "PDB", "url": "https://www.rcsb.org/structure/4MMY" }, { "id": "4O02", "database": "PDB", "url": "https://www.rcsb.org/structure/4O02" }, { "id": "4Z7N", "database": "PDB", "url": "https://www.rcsb.org/structure/4Z7N" }, { "id": "4Z7Q", "database": "PDB", "url": "https://www.rcsb.org/structure/4Z7Q" }, { "id": "4Z7O", "database": "PDB", "url": "https://www.rcsb.org/structure/4Z7O" }, { "id": "4MMZ", "database": "PDB", "url": "https://www.rcsb.org/structure/4MMZ" }, { "id": "5HDB", "database": "PDB", "url": "https://www.rcsb.org/structure/5HDB" }, { "id": "6BXB", "database": "PDB", "url": "https://www.rcsb.org/structure/6BXB" }, { "id": "6BXF", "database": "PDB", "url": "https://www.rcsb.org/structure/6BXF" }, { "id": "6BXJ", "database": "PDB", "url": "https://www.rcsb.org/structure/6BXJ" }, { "id": "6CKB", "database": "PDB", "url": "https://www.rcsb.org/structure/6CKB" }, { "id": "6MK0", "database": "PDB", "url": "https://www.rcsb.org/structure/6MK0" }, { "id": "6MSL", "database": "PDB", "url": "https://www.rcsb.org/structure/6MSL" }, { "id": "6MSU", "database": "PDB", "url": "https://www.rcsb.org/structure/6MSU" }, { "id": "6NAJ", "database": "PDB", "url": "https://www.rcsb.org/structure/6NAJ" }, { "id": "7L8P", "database": "PDB", "url": "https://www.rcsb.org/structure/7L8P" }, { "id": "7TCT", "database": "PDB", "url": "https://www.rcsb.org/structure/7TCT" }, { "id": "7TD8", "database": "PDB", "url": "https://www.rcsb.org/structure/7TD8" }, { "id": "7THO", "database": "PDB", "url": "https://www.rcsb.org/structure/7THO" }, { "id": "7TMZ", "database": "PDB", "url": "https://www.rcsb.org/structure/7TMZ" }, { "id": "7TPD", "database": "PDB", "url": "https://www.rcsb.org/structure/7TPD" }, { "id": "7U60", "database": "PDB", "url": "https://www.rcsb.org/structure/7U60" }, { "id": "7U9F", "database": "PDB", "url": "https://www.rcsb.org/structure/7U9F" }, { "id": "7U9V", "database": "PDB", "url": "https://www.rcsb.org/structure/7U9V" }, { "id": "7UBR", "database": "PDB", "url": "https://www.rcsb.org/structure/7UBR" }, { "id": "7UCY", "database": "PDB", "url": "https://www.rcsb.org/structure/7UCY" }, { "id": "7UDG", "database": "PDB", "url": "https://www.rcsb.org/structure/7UDG" }, { "id": "7UDH", "database": "PDB", "url": "https://www.rcsb.org/structure/7UDH" }, { "id": "7UFH", "database": "PDB", "url": "https://www.rcsb.org/structure/7UFH" }, { "id": "7UH8", "database": "PDB", "url": "https://www.rcsb.org/structure/7UH8" }, { "id": "7UJE", "database": "PDB", "url": "https://www.rcsb.org/structure/7UJE" }, { "id": "7UJK", "database": "PDB", "url": "https://www.rcsb.org/structure/7UJK" }, { "id": "7UK9", "database": "PDB", "url": "https://www.rcsb.org/structure/7UK9" }, { "id": "7UKO", "database": "PDB", "url": "https://www.rcsb.org/structure/7UKO" }, { "id": "7UKP", "database": "PDB", "url": "https://www.rcsb.org/structure/7UKP" }, { "id": "7UKT", "database": "PDB", "url": "https://www.rcsb.org/structure/7UKT" }, { "id": "7UE0", "database": "PDB", "url": "https://www.rcsb.org/structure/7UE0" }, { "id": "8T2U", "database": "PDB", "url": "https://www.rcsb.org/structure/8T2U" }, { "id": "9E8B", "database": "PDB", "url": "https://www.rcsb.org/structure/9E8B" }, { "id": "9IUJ", "database": "PDB", "url": "https://www.rcsb.org/structure/9IUJ" }, { "id": "9JEI", "database": "PDB", "url": "https://www.rcsb.org/structure/9JEI" }, { "id": "9TD2", "database": "PDB", "url": "https://www.rcsb.org/structure/9TD2" }, { "id": "9LT3", "database": "PDB", "url": "https://www.rcsb.org/structure/9LT3" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "P05106-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 1741, "start_aa": "Asn", "end_pos": 1741, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn1741", "evidence": [ { "id": "Q5SZK8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q5SZK8#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "Q5SZK8-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true, "automatic_literature_mining": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=3QYT&bu=0&command=select+.A:413;+center+selection;+zoom+selection" }, "start_pos": 432, "start_aa": "Asn", "end_pos": 432, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn432", "evidence": [ { "id": "19838169", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19838169" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "15536627", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/15536627" }, { "id": "P02787", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P02787#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "14760718", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/14760718" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "22327295", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/22327295" }, { "id": "15084671", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/15084671" }, { "id": "6SOZ", "database": "PDB", "url": "https://www.rcsb.org/sequence/6SOZ" }, { "id": "6SOY", "database": "PDB", "url": "https://www.rcsb.org/sequence/6SOY" }, { "id": "31636418", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/31636418" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "GLY_000481", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000481" }, { "id": "24780636", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24780636" }, { "id": "25425657", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/25425657" }, { "id": "15474009", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/15474009" }, { "id": "36543268", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/36543268" }, { "id": "3QYT", "database": "PDB", "url": "https://www.rcsb.org/structure/3QYT" }, { "id": "4H0W", "database": "PDB", "url": "https://www.rcsb.org/structure/4H0W" }, { "id": "8BRC", "database": "PDB", "url": "https://www.rcsb.org/structure/8BRC" }, { "id": "9H4V", "database": "PDB", "url": "https://www.rcsb.org/structure/9H4V" }, { "id": "9THQ", "database": "PDB", "url": "https://www.rcsb.org/structure/9THQ" } ], "mining_tool": "GlycoSiteMiner_1.0", "mining_tool_list": [ { "label": "GlycoSiteMiner_1.0" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "P02787-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true, "automatic_literature_mining": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=3QYT&bu=0&command=select+.A:611;+center+selection;+zoom+selection" }, "start_pos": 630, "start_aa": "Asn", "end_pos": 630, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn630", "evidence": [ { "id": "19838169", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19838169" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "15536627", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/15536627" }, { "id": "P02787", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P02787#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "14760718", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/14760718" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "16740002", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16740002" }, { "id": "22327295", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/22327295" }, { "id": "19139490", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19139490" }, { "id": "15084671", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/15084671" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "GLY_000481", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000481" }, { "id": "24780636", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24780636" }, { "id": "25425657", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/25425657" }, { "id": "29427759", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/29427759" }, { "id": "15474009", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/15474009" }, { "id": "36543268", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/36543268" }, { "id": "3QYT", "database": "PDB", "url": "https://www.rcsb.org/structure/3QYT" }, { "id": "6D03", "database": "PDB", "url": "https://www.rcsb.org/structure/6D03" }, { "id": "6D04", "database": "PDB", "url": "https://www.rcsb.org/structure/6D04" }, { "id": "6D05", "database": "PDB", "url": "https://www.rcsb.org/structure/6D05" } ], "mining_tool": "GlycoSiteMiner_1.0", "mining_tool_list": [ { "label": "GlycoSiteMiner_1.0" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P02787-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 314, "start_aa": "Asn", "end_pos": 314, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn314", "evidence": [ { "id": "P36537", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P36537#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P36537-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 180, "start_aa": "Asn", "end_pos": 180, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn180", "evidence": [ { "id": "Q9UK55", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9UK55#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "Q9UK55-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=3H5C&bu=0&command=select+.A:274;+center+selection;+zoom+selection" }, "start_pos": 295, "start_aa": "Asn", "end_pos": 295, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn295", "evidence": [ { "id": "Q9UK55", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9UK55#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "20427285", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/20427285" }, { "id": "3H5C", "database": "PDB", "url": "https://www.rcsb.org/structure/3H5C" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "Q9UK55-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true, "automatic_literature_mining": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=3HN3&bu=0&command=select+.E:272;+center+selection;+zoom+selection" }, "start_pos": 272, "start_aa": "Asn", "end_pos": 272, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn272", "evidence": [ { "id": "P08236", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P08236#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "12754519", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/12754519" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "24260279", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24260279" }, { "id": "GLY_000481", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000481" }, { "id": "3HN3", "database": "PDB", "url": "https://www.rcsb.org/structure/3HN3" } ], "mining_tool": "GlycoSiteMiner_1.0", "mining_tool_list": [ { "label": "GlycoSiteMiner_1.0" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "P08236-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "Complex", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) (complex) asparagine;Complex", "icn3d_view": {}, "start_pos": 490, "start_aa": "Asn", "end_pos": 490, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn490", "evidence": [ { "id": "Q6UY14", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q6UY14#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "19139490", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19139490" } ], "filter_code": "001000000000000000000.10000000000000.00.01001", "uniprot_canonical_ac": "Q6UY14-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "Complex", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) (complex) asparagine;Complex", "icn3d_view": {}, "start_pos": 112, "start_aa": "Asn", "end_pos": 112, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn112", "evidence": [ { "id": "P33151", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P33151#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "21269602", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/21269602" }, { "id": "19139490", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19139490" } ], "filter_code": "001000000000000000000.10000000000000.00.01000", "uniprot_canonical_ac": "P33151-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "Complex", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) (complex) asparagine;Complex", "icn3d_view": {}, "start_pos": 442, "start_aa": "Asn", "end_pos": 442, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn442", "evidence": [ { "id": "P33151", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P33151#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "21269602", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/21269602" }, { "id": "19139490", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19139490" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" } ], "filter_code": "001000000000000000000.10000000000000.00.01000", "uniprot_canonical_ac": "P33151-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 523, "start_aa": "Asn", "end_pos": 523, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn523", "evidence": [ { "id": "P33151", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P33151#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P33151-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 535, "start_aa": "Asn", "end_pos": 535, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn535", "evidence": [ { "id": "P33151", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P33151#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P33151-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 169, "start_aa": "Asn", "end_pos": 169, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn169", "evidence": [ { "id": "P01042", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P01042#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "14760718", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/14760718" }, { "id": "3484703", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/3484703" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P01042-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "Complex", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) (complex) asparagine;Complex", "icn3d_view": {}, "start_pos": 205, "start_aa": "Asn", "end_pos": 205, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn205", "evidence": [ { "id": "P01042", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P01042#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "3484703", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/3484703" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "19139490", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19139490" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.10000000000000.00.01001", "uniprot_canonical_ac": "P01042-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 294, "start_aa": "Asn", "end_pos": 294, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn294", "evidence": [ { "id": "19838169", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19838169" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "P01042", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P01042#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "14760718", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/14760718" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "12754519", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/12754519" }, { "id": "19139490", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19139490" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "P01042-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "Complex", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) (complex) asparagine;Complex", "icn3d_view": {}, "start_pos": 48, "start_aa": "Asn", "end_pos": 48, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn48", "evidence": [ { "id": "P01042", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P01042#ptm_processing" }, { "id": "19139490", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19139490" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.10000000000000.00.01001", "uniprot_canonical_ac": "P01042-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 101, "start_aa": "Asn", "end_pos": 101, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn101", "evidence": [ { "id": "Q9BY67", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9BY67#ptm_processing" }, { "id": "19349973", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19349973" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "Q9BY67-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 113, "start_aa": "Asn", "end_pos": 113, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn113", "evidence": [ { "id": "Q9BY67", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9BY67#ptm_processing" }, { "id": "19349973", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19349973" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "Q9BY67-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 166, "start_aa": "Asn", "end_pos": 166, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn166", "evidence": [ { "id": "Q9NZP8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9NZP8#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "Q9NZP8-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "Complex", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) (complex) asparagine;Complex", "icn3d_view": {}, "start_pos": 242, "start_aa": "Asn", "end_pos": 242, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn242", "evidence": [ { "id": "Q9NZP8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9NZP8#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "19139490", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19139490" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" } ], "filter_code": "001000000000000000000.10000000000000.00.01001", "uniprot_canonical_ac": "Q9NZP8-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 296, "start_aa": "Asn", "end_pos": 296, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn296", "evidence": [ { "id": "Q9NZP8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9NZP8#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "Q9NZP8-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=5HKJ&bu=0&command=select+.A:37;+center+selection;+zoom+selection" }, "start_pos": 146, "start_aa": "Asn", "end_pos": 146, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn146", "evidence": [ { "id": "P02745", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P02745#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "5HKJ", "database": "PDB", "url": "https://www.rcsb.org/structure/5HKJ" }, { "id": "6Z6V", "database": "PDB", "url": "https://www.rcsb.org/structure/6Z6V" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P02745-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "Complex", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) (complex) asparagine;Complex", "icn3d_view": {}, "start_pos": 130, "start_aa": "Asn", "end_pos": 130, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn130", "evidence": [ { "id": "P43251", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P43251#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "19139490", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19139490" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.10000000000000.00.01001", "uniprot_canonical_ac": "P43251-4" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 183, "start_aa": "Asn", "end_pos": 183, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn183", "evidence": [ { "id": "P43251", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P43251#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P43251-4" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 329, "start_aa": "Asn", "end_pos": 329, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn329", "evidence": [ { "id": "P43251", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P43251#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P43251-4" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 382, "start_aa": "Asn", "end_pos": 382, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn382", "evidence": [ { "id": "P43251", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P43251#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P43251-4" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 99, "start_aa": "Asn", "end_pos": 99, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn99", "evidence": [ { "id": "P43251", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P43251#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P43251-4" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true, "automatic_literature_mining": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 169, "start_aa": "Asn", "end_pos": 169, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn169", "evidence": [ { "id": "29741879", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/29741879" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "25374123", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/25374123" }, { "id": "24279413", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24279413" }, { "id": "P04004", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P04004#ptm_processing" }, { "id": "14760718", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/14760718" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "19899825", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19899825" }, { "id": "GLY_000481", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000481" } ], "mining_tool": "GlycoSiteMiner_1.0", "mining_tool_list": [ { "label": "GlycoSiteMiner_1.0" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "P04004-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 242, "start_aa": "Asn", "end_pos": 242, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn242", "evidence": [ { "id": "25374123", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/25374123" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "24279413", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24279413" }, { "id": "P04004", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P04004#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "14760718", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/14760718" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "19139490", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19139490" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P04004-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true, "automatic_literature_mining": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 86, "start_aa": "Asn", "end_pos": 86, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn86", "evidence": [ { "id": "25374123", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/25374123" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "P04004", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P04004#ptm_processing" }, { "id": "17558413", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/17558413" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "14760718", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/14760718" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "19139490", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19139490" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "29427759", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/29427759" }, { "id": "GLY_000481", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000481" }, { "id": "24628331", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24628331" } ], "mining_tool": "GlycoSiteMiner_1.0", "mining_tool_list": [ { "label": "GlycoSiteMiner_1.0" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P04004-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 399, "start_aa": "Asn", "end_pos": 399, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn399", "evidence": [ { "id": "P55285", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P55285#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P55285-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 249, "start_aa": "Asn", "end_pos": 249, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn249", "evidence": [ { "id": "P00748", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P00748#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "3877053", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/3877053" }, { "id": "3886654", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/3886654" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P00748-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 433, "start_aa": "Asn", "end_pos": 433, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn433", "evidence": [ { "id": "P00748", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P00748#ptm_processing" }, { "id": "14760718", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/14760718" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "P00748-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=5J5J&bu=0&command=select+.A:131;+center+selection;+zoom+selection" }, "start_pos": 182, "start_aa": "Asn", "end_pos": 182, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn182", "evidence": [ { "id": "Q14126", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q14126#ptm_processing" }, { "id": "19349973", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19349973" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "30885746", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/30885746" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "5J5J", "database": "PDB", "url": "https://www.rcsb.org/structure/5J5J" } ], "filter_code": "001000000000000000000.00010000000000.00.01101", "uniprot_canonical_ac": "Q14126-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "Complex", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) (complex) asparagine;Complex", "icn3d_view": {}, "start_pos": 444, "start_aa": "Asn", "end_pos": 444, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn444", "evidence": [ { "id": "Q16610", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q16610#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "19139490", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19139490" } ], "filter_code": "001000000000000000000.10000000000000.00.01001", "uniprot_canonical_ac": "Q16610-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 412, "start_aa": "Asn", "end_pos": 412, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn412", "evidence": [ { "id": "Q14515", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q14515#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "Q14515-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 242, "start_aa": "Asn", "end_pos": 242, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn242", "evidence": [ { "id": "Q9UNW1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9UNW1#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "Q9UNW1-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 276, "start_aa": "Asn", "end_pos": 276, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn276", "evidence": [ { "id": "P48357", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P48357#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "9786864", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/9786864" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "P48357-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=8X80&bu=0&command=select+.C:516;+center+selection;+zoom+selection" }, "start_pos": 516, "start_aa": "Asn", "end_pos": 516, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn516", "evidence": [ { "id": "P48357", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P48357#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "9786864", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/9786864" }, { "id": "8X80", "database": "PDB", "url": "https://www.rcsb.org/structure/8X80" }, { "id": "8X81", "database": "PDB", "url": "https://www.rcsb.org/structure/8X81" }, { "id": "8X85", "database": "PDB", "url": "https://www.rcsb.org/structure/8X85" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P48357-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 515, "start_aa": "Asn", "end_pos": 515, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn515", "evidence": [ { "id": "29741879", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/29741879" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "Q9Y4L1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9Y4L1#ptm_processing" }, { "id": "19349973", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19349973" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "12754519", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/12754519" }, { "id": "16263699", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16263699" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "Q9Y4L1-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 830, "start_aa": "Asn", "end_pos": 830, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn830", "evidence": [ { "id": "29741879", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/29741879" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "Q9Y4L1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9Y4L1#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "12754519", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/12754519" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "Q9Y4L1-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 869, "start_aa": "Asn", "end_pos": 869, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn869", "evidence": [ { "id": "29741879", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/29741879" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "Q9Y4L1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9Y4L1#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "Q9Y4L1-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 931, "start_aa": "Asn", "end_pos": 931, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn931", "evidence": [ { "id": "29741879", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/29741879" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "Q9Y4L1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9Y4L1#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "12754519", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/12754519" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "Q9Y4L1-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 206, "start_aa": "Asn", "end_pos": 206, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn206", "evidence": [ { "id": "P32942", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P32942#ptm_processing" }, { "id": "19349973", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19349973" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "P32942-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 363, "start_aa": "Asn", "end_pos": 363, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn363", "evidence": [ { "id": "P32942", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P32942#ptm_processing" }, { "id": "19349973", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19349973" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P32942-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 139, "start_aa": "Asn", "end_pos": 139, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn139", "evidence": [ { "id": "P05164", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P05164#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P05164-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=5WDJ&bu=0&command=select+.B:317;+center+selection;+zoom+selection" }, "start_pos": 483, "start_aa": "Asn", "end_pos": 483, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn483", "evidence": [ { "id": "P05164", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P05164#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "16740002", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16740002" }, { "id": "4EJX", "database": "PDB", "url": "https://www.rcsb.org/sequence/4EJX" }, { "id": "23843990", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23843990" }, { "id": "20332087", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/20332087" }, { "id": "31719144", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/31719144" }, { "id": "40963017", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/40963017" }, { "id": "5WDJ", "database": "PDB", "url": "https://www.rcsb.org/structure/5WDJ" }, { "id": "9GEN", "database": "PDB", "url": "https://www.rcsb.org/structure/9GEN" }, { "id": "9IHF", "database": "PDB", "url": "https://www.rcsb.org/structure/9IHF" }, { "id": "9IHD", "database": "PDB", "url": "https://www.rcsb.org/structure/9IHD" }, { "id": "9QJ3", "database": "PDB", "url": "https://www.rcsb.org/structure/9QJ3" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P05164-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 143, "start_aa": "Asn", "end_pos": 143, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn143", "evidence": [ { "id": "P55058", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P55058#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "19139490", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19139490" }, { "id": "21515415", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/21515415" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.00010000000000.00.01101", "uniprot_canonical_ac": "P55058-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "Complex", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) (complex) asparagine;Complex", "icn3d_view": {}, "start_pos": 245, "start_aa": "Asn", "end_pos": 245, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn245", "evidence": [ { "id": "P55058", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P55058#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "21515415", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/21515415" }, { "id": "19139490", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19139490" } ], "filter_code": "001000000000000000000.10000000000000.00.01000", "uniprot_canonical_ac": "P55058-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 398, "start_aa": "Asn", "end_pos": 398, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn398", "evidence": [ { "id": "P55058", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P55058#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P55058-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "Complex", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) (complex) asparagine;Complex", "icn3d_view": {}, "start_pos": 64, "start_aa": "Asn", "end_pos": 64, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn64", "evidence": [ { "id": "P55058", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P55058#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "19139490", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19139490" }, { "id": "21515415", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/21515415" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.10000000000000.00.01101", "uniprot_canonical_ac": "P55058-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 94, "start_aa": "Asn", "end_pos": 94, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn94", "evidence": [ { "id": "P55058", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P55058#ptm_processing" }, { "id": "21515415", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/21515415" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" } ], "filter_code": "001000000000000000000.00010000000000.00.01101", "uniprot_canonical_ac": "P55058-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 530, "start_aa": "Asn", "end_pos": 530, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn530", "evidence": [ { "id": "P07225", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P07225#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P07225-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 1430, "start_aa": "Asn", "end_pos": 1430, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn1430", "evidence": [ { "id": "P20742", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P20742#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "P20742-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 406, "start_aa": "Asn", "end_pos": 406, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn406", "evidence": [ { "id": "P20742", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P20742#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P20742-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 932, "start_aa": "Asn", "end_pos": 932, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn932", "evidence": [ { "id": "P20742", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P20742#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P20742-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 997, "start_aa": "Asn", "end_pos": 997, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn997", "evidence": [ { "id": "P20742", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P20742#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P20742-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 103, "start_aa": "Asn", "end_pos": 103, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn103", "evidence": [ { "id": "Q6UX71", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q6UX71#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "Q6UX71-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 527, "start_aa": "Asn", "end_pos": 527, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn527", "evidence": [ { "id": "P35916", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P35916#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P35916-2" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=1YBW&bu=0&command=select+.B:468;+center+selection;+zoom+selection" }, "start_pos": 468, "start_aa": "Asn", "end_pos": 468, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn468", "evidence": [ { "id": "Q04756", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q04756#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "15713485", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/15713485" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "1YBW", "database": "PDB", "url": "https://www.rcsb.org/sequence/1YBW" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "Q04756-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true, "automatic_literature_mining": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 187, "start_aa": "Asn", "end_pos": 187, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn187", "evidence": [ { "id": "19838169", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19838169" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "24279413", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24279413" }, { "id": "P02790", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P02790#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "14760718", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/14760718" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "6371807", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/6371807" }, { "id": "16740002", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16740002" }, { "id": "19139490", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19139490" }, { "id": "15084671", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/15084671" }, { "id": "29427759", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/29427759" }, { "id": "GLY_000481", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000481" } ], "mining_tool": "RLIMS-G_1.0;GlycoSiteMiner_1.0", "mining_tool_list": [ { "label": "RLIMS-G_1.0" }, { "label": "GlycoSiteMiner_1.0" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P02790-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 64, "start_aa": "Asn", "end_pos": 64, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn64", "evidence": [ { "id": "19838169", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19838169" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "P02790", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P02790#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "6371807", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/6371807" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P02790-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 278, "start_aa": "Asn", "end_pos": 278, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn278", "evidence": [ { "id": "Q4G148", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q4G148#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "Q4G148-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 125, "start_aa": "Asn", "end_pos": 125, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn125", "evidence": [ { "id": "24279413", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24279413" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "P04196", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P04196#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P04196-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 344, "start_aa": "Asn", "end_pos": 344, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn344", "evidence": [ { "id": "P04196", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P04196#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "P04196-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 63, "start_aa": "Asn", "end_pos": 63, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn63", "evidence": [ { "id": "P04196", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P04196#ptm_processing" }, { "id": "19285951", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19285951" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P04196-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=1JMO&bu=0&command=select+.A:169;+center+selection;+zoom+selection" }, "start_pos": 188, "start_aa": "Asn", "end_pos": 188, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn188", "evidence": [ { "id": "24279413", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24279413" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "P05546", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P05546#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "12169660", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/12169660" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "1JMO", "database": "PDB", "url": "https://www.rcsb.org/structure/1JMO" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "P05546-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 49, "start_aa": "Asn", "end_pos": 49, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn49", "evidence": [ { "id": "24279413", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24279413" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "P05546", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P05546#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "19139490", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19139490" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "P05546-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 733, "start_aa": "Asn", "end_pos": 733, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn733", "evidence": [ { "id": "Q13332", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q13332#ptm_processing" }, { "id": "19349973", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19349973" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "Q13332-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 966, "start_aa": "Asn", "end_pos": 966, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn966", "evidence": [ { "id": "P10586", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P10586#ptm_processing" }, { "id": "19349973", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19349973" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P10586-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 1159, "start_aa": "Asn", "end_pos": 1159, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn1159", "evidence": [ { "id": "Q92954", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q92954#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "Q92954-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true, "automatic_literature_mining": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=7YTC&bu=0&command=select+.J:48;+center+selection;+zoom+selection" }, "start_pos": 71, "start_aa": "Asn", "end_pos": 71, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn71", "evidence": [ { "id": "25802287", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/25802287" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "P01591", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P01591#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "18780401", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/18780401" }, { "id": "16740002", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16740002" }, { "id": "19139490", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19139490" }, { "id": "15084671", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/15084671" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "29427759", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/29427759" }, { "id": "GLY_000481", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000481" }, { "id": "7YTC", "database": "PDB", "url": "https://www.rcsb.org/structure/7YTC" }, { "id": "9MBZ", "database": "PDB", "url": "https://www.rcsb.org/structure/9MBZ" } ], "mining_tool": "RLIMS-G_1.0;GlycoSiteMiner_1.0", "mining_tool_list": [ { "label": "RLIMS-G_1.0" }, { "label": "GlycoSiteMiner_1.0" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P01591-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 98, "start_aa": "Asn", "end_pos": 98, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn98", "evidence": [ { "id": "P57087", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P57087#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P57087-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 196, "start_aa": "Asn", "end_pos": 196, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn196", "evidence": [ { "id": "29741879", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/29741879" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "Q9UHG3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9UHG3#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "Q9UHG3-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 323, "start_aa": "Asn", "end_pos": 323, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn323", "evidence": [ { "id": "Q9UHG3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9UHG3#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "Q9UHG3-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 353, "start_aa": "Asn", "end_pos": 353, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn353", "evidence": [ { "id": "29741879", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/29741879" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "Q9UHG3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9UHG3#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "Q9UHG3-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "Complex", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) (complex) asparagine;Complex", "icn3d_view": {}, "start_pos": 130, "start_aa": "Asn", "end_pos": 130, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn130", "evidence": [ { "id": "O00391", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O00391#ptm_processing" }, { "id": "19139490", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19139490" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "29757379", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/29757379" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" } ], "filter_code": "001000000000000000000.10000000000000.00.01101", "uniprot_canonical_ac": "O00391-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true, "automatic_literature_mining": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 207, "start_aa": "Asn", "end_pos": 207, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn207", "evidence": [ { "id": "24884609", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24884609" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "Q14624", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q14624#ptm_processing" }, { "id": "12754519", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/12754519" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "GLY_000481", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000481" } ], "mining_tool": "RLIMS-G_1.0;GlycoSiteMiner_1.0", "mining_tool_list": [ { "label": "RLIMS-G_1.0" }, { "label": "GlycoSiteMiner_1.0" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "Q14624-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true, "automatic_literature_mining": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 517, "start_aa": "Asn", "end_pos": 517, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn517", "evidence": [ { "id": "24884609", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24884609" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "Q14624", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q14624#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "14760718", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/14760718" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "GLY_000481", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000481" } ], "mining_tool": "RLIMS-G_1.0;GlycoSiteMiner_1.0", "mining_tool_list": [ { "label": "RLIMS-G_1.0" }, { "label": "GlycoSiteMiner_1.0" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "Q14624-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true, "automatic_literature_mining": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 577, "start_aa": "Asn", "end_pos": 577, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn577", "evidence": [ { "id": "24884609", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24884609" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "Q14624", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q14624#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "GLY_000481", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000481" } ], "mining_tool": "RLIMS-G_1.0;GlycoSiteMiner_1.0", "mining_tool_list": [ { "label": "RLIMS-G_1.0" }, { "label": "GlycoSiteMiner_1.0" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "Q14624-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true, "automatic_literature_mining": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 81, "start_aa": "Asn", "end_pos": 81, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn81", "evidence": [ { "id": "24884609", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24884609" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "Q14624", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q14624#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "GLY_000481", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000481" } ], "mining_tool": "RLIMS-G_1.0;GlycoSiteMiner_1.0", "mining_tool_list": [ { "label": "RLIMS-G_1.0" }, { "label": "GlycoSiteMiner_1.0" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "Q14624-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 282, "start_aa": "Asn", "end_pos": 282, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn282", "evidence": [ { "id": "Q14623", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q14623#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "Q14623-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 532, "start_aa": "Asn", "end_pos": 532, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn532", "evidence": [ { "id": "P56199", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P56199#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P56199-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 522, "start_aa": "Asn", "end_pos": 522, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn522", "evidence": [ { "id": "Q9UGT4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9UGT4#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "Q9UGT4-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 153, "start_aa": "Asn", "end_pos": 153, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn153", "evidence": [ { "id": "Q9NYV8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9NYV8#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "Q9NYV8-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 459, "start_aa": "Asn", "end_pos": 459, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn459", "evidence": [ { "id": "P13591", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P13591#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "9774483", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/9774483" } ], "filter_code": "001000000000000000000.00010000000000.00.01101", "uniprot_canonical_ac": "P13591-2" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=1DFV&bu=0&command=select+.B:65;+center+selection;+zoom+selection" }, "start_pos": 85, "start_aa": "Asn", "end_pos": 85, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn85", "evidence": [ { "id": "P80188", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P80188#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "16740002", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16740002" }, { "id": "7683678", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/7683678" }, { "id": "10684642", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/10684642" }, { "id": "1QQS", "database": "PDB", "url": "https://www.rcsb.org/sequence/1QQS" }, { "id": "1DFV", "database": "PDB", "url": "https://www.rcsb.org/sequence/1DFV" }, { "id": "15084671", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/15084671" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "P80188-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true, "automatic_literature_mining": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 112, "start_aa": "Asn", "end_pos": 112, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn112", "evidence": [ { "id": "29741879", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/29741879" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "P25311", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P25311#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "14760718", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/14760718" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "18780401", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/18780401" }, { "id": "16740002", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16740002" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "32507236", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/32507236" }, { "id": "GLY_000481", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000481" } ], "mining_tool": "GlycoSiteMiner_1.0", "mining_tool_list": [ { "label": "GlycoSiteMiner_1.0" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P25311-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 245, "start_aa": "Asn", "end_pos": 245, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn245", "evidence": [ { "id": "P78324", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P78324#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P78324-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 411, "start_aa": "Asn", "end_pos": 411, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn411", "evidence": [ { "id": "O95498", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O95498#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "O95498-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 561, "start_aa": "Asn", "end_pos": 561, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn561", "evidence": [ { "id": "P19320", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P19320#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P19320-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=4CYF&bu=0&command=select+.B:130;+center+selection;+zoom+selection" }, "start_pos": 130, "start_aa": "Asn", "end_pos": 130, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn130", "evidence": [ { "id": "O95497", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O95497#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "4CYG", "database": "PDB", "url": "https://www.rcsb.org/sequence/4CYG" }, { "id": "4CYY", "database": "PDB", "url": "https://www.rcsb.org/sequence/4CYY" }, { "id": "4CYF", "database": "PDB", "url": "https://www.rcsb.org/sequence/4CYF" }, { "id": "7SLV", "database": "PDB", "url": "https://www.rcsb.org/structure/7SLV" }, { "id": "7SLX", "database": "PDB", "url": "https://www.rcsb.org/structure/7SLX" }, { "id": "7SLY", "database": "PDB", "url": "https://www.rcsb.org/structure/7SLY" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "O95497-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 283, "start_aa": "Asn", "end_pos": 283, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn283", "evidence": [ { "id": "O95497", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O95497#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "O95497-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=4CYF&bu=0&command=select+.B:315;+center+selection;+zoom+selection" }, "start_pos": 315, "start_aa": "Asn", "end_pos": 315, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn315", "evidence": [ { "id": "O95497", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O95497#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "4CYG", "database": "PDB", "url": "https://www.rcsb.org/sequence/4CYG" }, { "id": "4CYY", "database": "PDB", "url": "https://www.rcsb.org/sequence/4CYY" }, { "id": "4CYF", "database": "PDB", "url": "https://www.rcsb.org/sequence/4CYF" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "O95497-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=4CYF&bu=0&command=select+.B:353;+center+selection;+zoom+selection" }, "start_pos": 353, "start_aa": "Asn", "end_pos": 353, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn353", "evidence": [ { "id": "O95497", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O95497#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "4CYG", "database": "PDB", "url": "https://www.rcsb.org/sequence/4CYG" }, { "id": "4CYY", "database": "PDB", "url": "https://www.rcsb.org/sequence/4CYY" }, { "id": "15084671", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/15084671" }, { "id": "4CYF", "database": "PDB", "url": "https://www.rcsb.org/sequence/4CYF" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "7SLV", "database": "PDB", "url": "https://www.rcsb.org/structure/7SLV" }, { "id": "7SLX", "database": "PDB", "url": "https://www.rcsb.org/structure/7SLX" }, { "id": "7SLY", "database": "PDB", "url": "https://www.rcsb.org/structure/7SLY" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "O95497-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 192, "start_aa": "Asn", "end_pos": 192, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn192", "evidence": [ { "id": "Q10588", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q10588#ptm_processing" }, { "id": "11866528", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/11866528" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "1ISG", "database": "PDB", "url": "https://www.rcsb.org/sequence/1ISG" }, { "id": "1ISF", "database": "PDB", "url": "https://www.rcsb.org/sequence/1ISF" }, { "id": "1ISM", "database": "PDB", "url": "https://www.rcsb.org/sequence/1ISM" }, { "id": "1ISH", "database": "PDB", "url": "https://www.rcsb.org/sequence/1ISH" }, { "id": "1ISI", "database": "PDB", "url": "https://www.rcsb.org/sequence/1ISI" }, { "id": "1ISJ", "database": "PDB", "url": "https://www.rcsb.org/sequence/1ISJ" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "Q10588-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 1271, "start_aa": "Asn", "end_pos": 1271, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn1271", "evidence": [ { "id": "Q7Z7M0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q7Z7M0#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "Q7Z7M0-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 439, "start_aa": "Asn", "end_pos": 439, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn439", "evidence": [ { "id": "P50895", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P50895#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "12754519", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/12754519" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "P50895-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 265, "start_aa": "Asn", "end_pos": 265, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn265", "evidence": [ { "id": "Q13740", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q13740#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "Q13740-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 499, "start_aa": "Asn", "end_pos": 499, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn499", "evidence": [ { "id": "Q13740", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q13740#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "12754519", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/12754519" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "Q13740-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=5A2F&bu=0&command=select+.A:95;+center+selection;+zoom+selection" }, "start_pos": 95, "start_aa": "Asn", "end_pos": 95, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn95", "evidence": [ { "id": "Q13740", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q13740#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "5A2F", "database": "PDB", "url": "https://www.rcsb.org/structure/5A2F" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "Q13740-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=1N1M&bu=0&command=select+.A:520;+center+selection;+zoom+selection" }, "start_pos": 520, "start_aa": "Asn", "end_pos": 520, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn520", "evidence": [ { "id": "P27487", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P27487#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "23835475", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23835475" }, { "id": "12483204", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/12483204" }, { "id": "4L72", "database": "PDB", "url": "https://www.rcsb.org/sequence/4L72" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "20684603", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/20684603" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "1N1M", "database": "PDB", "url": "https://www.rcsb.org/structure/1N1M" }, { "id": "1R9M", "database": "PDB", "url": "https://www.rcsb.org/structure/1R9M" }, { "id": "1R9N", "database": "PDB", "url": "https://www.rcsb.org/structure/1R9N" }, { "id": "1TK3", "database": "PDB", "url": "https://www.rcsb.org/structure/1TK3" }, { "id": "1U8E", "database": "PDB", "url": "https://www.rcsb.org/structure/1U8E" }, { "id": "1W1I", "database": "PDB", "url": "https://www.rcsb.org/structure/1W1I" }, { "id": "1X70", "database": "PDB", "url": "https://www.rcsb.org/structure/1X70" }, { "id": "2BGN", "database": "PDB", "url": "https://www.rcsb.org/structure/2BGN" }, { "id": "2FJP", "database": "PDB", "url": "https://www.rcsb.org/structure/2FJP" }, { "id": "2HHA", "database": "PDB", "url": "https://www.rcsb.org/structure/2HHA" }, { "id": "2IIT", "database": "PDB", "url": "https://www.rcsb.org/structure/2IIT" }, { "id": "2IIV", "database": "PDB", "url": "https://www.rcsb.org/structure/2IIV" }, { "id": "2OPH", "database": "PDB", "url": "https://www.rcsb.org/structure/2OPH" }, { "id": "2P8S", "database": "PDB", "url": "https://www.rcsb.org/structure/2P8S" }, { "id": "2QT9", "database": "PDB", "url": "https://www.rcsb.org/structure/2QT9" }, { "id": "2QTB", "database": "PDB", "url": "https://www.rcsb.org/structure/2QTB" }, { "id": "3C43", "database": "PDB", "url": "https://www.rcsb.org/structure/3C43" }, { "id": "3C45", "database": "PDB", "url": "https://www.rcsb.org/structure/3C45" }, { "id": "3D4L", "database": "PDB", "url": "https://www.rcsb.org/structure/3D4L" }, { "id": "3EIO", "database": "PDB", "url": "https://www.rcsb.org/structure/3EIO" }, { "id": "3G0B", "database": "PDB", "url": "https://www.rcsb.org/structure/3G0B" }, { "id": "3O95", "database": "PDB", "url": "https://www.rcsb.org/structure/3O95" }, { "id": "3SWW", "database": "PDB", "url": "https://www.rcsb.org/structure/3SWW" }, { "id": "4A5S", "database": "PDB", "url": "https://www.rcsb.org/structure/4A5S" }, { "id": "3SX4", "database": "PDB", "url": "https://www.rcsb.org/structure/3SX4" }, { "id": "3Q0T", "database": "PDB", "url": "https://www.rcsb.org/structure/3Q0T" }, { "id": "3NOX", "database": "PDB", "url": "https://www.rcsb.org/structure/3NOX" }, { "id": "4N8E", "database": "PDB", "url": "https://www.rcsb.org/structure/4N8E" }, { "id": "4N8D", "database": "PDB", "url": "https://www.rcsb.org/structure/4N8D" }, { "id": "8WKU", "database": "PDB", "url": "https://www.rcsb.org/structure/8WKU" }, { "id": "9K9N", "database": "PDB", "url": "https://www.rcsb.org/structure/9K9N" } ], "filter_code": "001000000000000000000.00010000000000.00.01101", "uniprot_canonical_ac": "P27487-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=1R9M&bu=0&command=select+.D:685;+center+selection;+zoom+selection" }, "start_pos": 685, "start_aa": "Asn", "end_pos": 685, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn685", "evidence": [ { "id": "29741879", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/29741879" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "P27487", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P27487#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "1R9M", "database": "PDB", "url": "https://www.rcsb.org/structure/1R9M" }, { "id": "1R9N", "database": "PDB", "url": "https://www.rcsb.org/structure/1R9N" }, { "id": "8WKU", "database": "PDB", "url": "https://www.rcsb.org/structure/8WKU" }, { "id": "9GOH", "database": "PDB", "url": "https://www.rcsb.org/structure/9GOH" }, { "id": "9JMJ", "database": "PDB", "url": "https://www.rcsb.org/structure/9JMJ" }, { "id": "9JMM", "database": "PDB", "url": "https://www.rcsb.org/structure/9JMM" }, { "id": "9V2L", "database": "PDB", "url": "https://www.rcsb.org/structure/9V2L" } ], "filter_code": "001000000000000000000.00010000000000.00.01101", "uniprot_canonical_ac": "P27487-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 1617, "start_aa": "Asn", "end_pos": 1617, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn1617", "evidence": [ { "id": "P01024", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P01024#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P01024-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=5FO9&bu=0&command=select+.D:85;+center+selection;+zoom+selection" }, "start_pos": 85, "start_aa": "Asn", "end_pos": 85, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn85", "evidence": [ { "id": "4077844", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/4077844" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "24279413", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24279413" }, { "id": "29671580", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/29671580" }, { "id": "P01024", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P01024#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "12754519", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/12754519" }, { "id": "17051150", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/17051150" }, { "id": "2579379", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/2579379" }, { "id": "17684013", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/17684013" }, { "id": "16263699", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16263699" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "5FO9", "database": "PDB", "url": "https://www.rcsb.org/structure/5FO9" }, { "id": "6RU5", "database": "PDB", "url": "https://www.rcsb.org/structure/6RU5" }, { "id": "7QIV", "database": "PDB", "url": "https://www.rcsb.org/structure/7QIV" }, { "id": "8UH2", "database": "PDB", "url": "https://www.rcsb.org/structure/8UH2" }, { "id": "8UIN", "database": "PDB", "url": "https://www.rcsb.org/structure/8UIN" }, { "id": "9U61", "database": "PDB", "url": "https://www.rcsb.org/structure/9U61" }, { "id": "9U62", "database": "PDB", "url": "https://www.rcsb.org/structure/9U62" }, { "id": "9QK2", "database": "PDB", "url": "https://www.rcsb.org/structure/9QK2" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "P01024-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=2I07&bu=0&command=select+.B:917;+center+selection;+zoom+selection" }, "start_pos": 939, "start_aa": "Asn", "end_pos": 939, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn939", "evidence": [ { "id": "29741879", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/29741879" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "P01024", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P01024#ptm_processing" }, { "id": "14760718", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/14760718" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "17051150", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/17051150" }, { "id": "2I07", "database": "PDB", "url": "https://www.rcsb.org/structure/2I07" }, { "id": "2XWB", "database": "PDB", "url": "https://www.rcsb.org/structure/2XWB" }, { "id": "2XWJ", "database": "PDB", "url": "https://www.rcsb.org/structure/2XWJ" }, { "id": "2WII", "database": "PDB", "url": "https://www.rcsb.org/structure/2WII" }, { "id": "2ICF", "database": "PDB", "url": "https://www.rcsb.org/structure/2ICF" }, { "id": "6EHG", "database": "PDB", "url": "https://www.rcsb.org/structure/6EHG" }, { "id": "7AKK", "database": "PDB", "url": "https://www.rcsb.org/structure/7AKK" }, { "id": "7QIV", "database": "PDB", "url": "https://www.rcsb.org/structure/7QIV" }, { "id": "7TV9", "database": "PDB", "url": "https://www.rcsb.org/structure/7TV9" }, { "id": "8ENU", "database": "PDB", "url": "https://www.rcsb.org/structure/8ENU" }, { "id": "8OQ3", "database": "PDB", "url": "https://www.rcsb.org/structure/8OQ3" }, { "id": "8UH2", "database": "PDB", "url": "https://www.rcsb.org/structure/8UH2" }, { "id": "8UIN", "database": "PDB", "url": "https://www.rcsb.org/structure/8UIN" }, { "id": "9U62", "database": "PDB", "url": "https://www.rcsb.org/structure/9U62" }, { "id": "9QK2", "database": "PDB", "url": "https://www.rcsb.org/structure/9QK2" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "P01024-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 151, "start_aa": "Asn", "end_pos": 151, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn151", "evidence": [ { "id": "P08571", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P08571#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "P08571-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 282, "start_aa": "Asn", "end_pos": 282, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn282", "evidence": [ { "id": "P08571", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P08571#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P08571-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=7NOZ&bu=0&command=select+.F:122;+center+selection;+zoom+selection" }, "start_pos": 122, "start_aa": "Asn", "end_pos": 122, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn122", "evidence": [ { "id": "P00751", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P00751#ptm_processing" }, { "id": "17310251", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/17310251" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "6546754", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/6546754" }, { "id": "7NOZ", "database": "PDB", "url": "https://www.rcsb.org/structure/7NOZ" }, { "id": "2XWB", "database": "PDB", "url": "https://www.rcsb.org/structure/2XWB" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P00751-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=2OK5&bu=0&command=select+.A:260;+center+selection;+zoom+selection" }, "start_pos": 285, "start_aa": "Asn", "end_pos": 285, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn285", "evidence": [ { "id": "P00751", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P00751#ptm_processing" }, { "id": "17310251", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/17310251" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "6546754", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/6546754" }, { "id": "2OK5", "database": "PDB", "url": "https://www.rcsb.org/structure/2OK5" }, { "id": "8ENU", "database": "PDB", "url": "https://www.rcsb.org/structure/8ENU" }, { "id": "9U62", "database": "PDB", "url": "https://www.rcsb.org/structure/9U62" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P00751-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=2OK5&bu=0&command=select+.A:353;+center+selection;+zoom+selection" }, "start_pos": 378, "start_aa": "Asn", "end_pos": 378, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn378", "evidence": [ { "id": "P00751", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P00751#ptm_processing" }, { "id": "17310251", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/17310251" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "19574954", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19574954" }, { "id": "6546754", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/6546754" }, { "id": "2WIN", "database": "PDB", "url": "https://www.rcsb.org/sequence/2WIN" }, { "id": "19503103", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19503103" }, { "id": "2OK5", "database": "PDB", "url": "https://www.rcsb.org/structure/2OK5" }, { "id": "2XWB", "database": "PDB", "url": "https://www.rcsb.org/structure/2XWB" }, { "id": "2XWJ", "database": "PDB", "url": "https://www.rcsb.org/structure/2XWJ" }, { "id": "3HS0", "database": "PDB", "url": "https://www.rcsb.org/structure/3HS0" }, { "id": "8EOK", "database": "PDB", "url": "https://www.rcsb.org/structure/8EOK" }, { "id": "8ENU", "database": "PDB", "url": "https://www.rcsb.org/structure/8ENU" }, { "id": "9U62", "database": "PDB", "url": "https://www.rcsb.org/structure/9U62" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P00751-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=8S3O&bu=0&command=select+.A:118;+center+selection;+zoom+selection" }, "start_pos": 118, "start_aa": "Asn", "end_pos": 118, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn118", "evidence": [ { "id": "Q6YHK3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q6YHK3#ptm_processing" }, { "id": "19349973", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19349973" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "8S3O", "database": "PDB", "url": "https://www.rcsb.org/structure/8S3O" }, { "id": "9FX2", "database": "PDB", "url": "https://www.rcsb.org/structure/9FX2" }, { "id": "9FX3", "database": "PDB", "url": "https://www.rcsb.org/structure/9FX3" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "Q6YHK3-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 247, "start_aa": "Asn", "end_pos": 247, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn247", "evidence": [ { "id": "Q6YHK3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q6YHK3#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "16263699", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16263699" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "Q6YHK3-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=9FX2&bu=0&command=select+.A:419;+center+selection;+zoom+selection" }, "start_pos": 419, "start_aa": "Asn", "end_pos": 419, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn419", "evidence": [ { "id": "Q6YHK3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q6YHK3#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "9FX2", "database": "PDB", "url": "https://www.rcsb.org/structure/9FX2" }, { "id": "9FX3", "database": "PDB", "url": "https://www.rcsb.org/structure/9FX3" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "Q6YHK3-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 68, "start_aa": "Asn", "end_pos": 68, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn68", "evidence": [ { "id": "Q6YHK3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q6YHK3#ptm_processing" }, { "id": "19349973", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19349973" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "Q6YHK3-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 546, "start_aa": "Asn", "end_pos": 546, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn546", "evidence": [ { "id": "29741879", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/29741879" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "Q02487", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q02487#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "Q02487-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 3904, "start_aa": "Asn", "end_pos": 3904, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn3904", "evidence": [ { "id": "Q9NYQ8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9NYQ8#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "Q9NYQ8-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=1Z68&bu=0&command=select+.B:227;+center+selection;+zoom+selection" }, "start_pos": 227, "start_aa": "Asn", "end_pos": 227, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn227", "evidence": [ { "id": "Q12884", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q12884#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" }, { "id": "15809306", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/15809306" }, { "id": "1Z68", "database": "PDB", "url": "https://www.rcsb.org/structure/1Z68" }, { "id": "6Y0F", "database": "PDB", "url": "https://www.rcsb.org/structure/6Y0F" }, { "id": "9DVQ", "database": "PDB", "url": "https://www.rcsb.org/structure/9DVQ" }, { "id": "9DVR", "database": "PDB", "url": "https://www.rcsb.org/structure/9DVR" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "Q12884-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 99, "start_aa": "Asn", "end_pos": 99, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn99", "evidence": [ { "id": "Q12884", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q12884#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "PRU00498", "database": "PROSITE-ProRule", "url": "https://prosite.expasy.org/rule/PRU00498" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "Q12884-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 580, "start_aa": "Asn", "end_pos": 580, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn580", "evidence": [ { "id": "Q06033", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q06033#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "Q06033-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 91, "start_aa": "Asn", "end_pos": 91, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn91", "evidence": [ { "id": "Q06033", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q06033#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "Q06033-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 105, "start_aa": "Asn", "end_pos": 105, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn105", "evidence": [ { "id": "P13598", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P13598#ptm_processing" }, { "id": "19349973", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19349973" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "9153399", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/9153399" }, { "id": "1ZXQ", "database": "PDB", "url": "https://www.rcsb.org/sequence/1ZXQ" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P13598-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 176, "start_aa": "Asn", "end_pos": 176, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn176", "evidence": [ { "id": "P13598", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P13598#ptm_processing" }, { "id": "19349973", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19349973" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "P13598-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 159, "start_aa": "Asn", "end_pos": 159, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn159", "evidence": [ { "id": "Q9ULI3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9ULI3#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "Q9ULI3-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 520, "start_aa": "Asn", "end_pos": 520, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn520", "evidence": [ { "id": "Q9ULI3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9ULI3#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "Q9ULI3-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 296, "start_aa": "Asn", "end_pos": 296, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn296", "evidence": [ { "id": "P26927", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P26927#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "P26927-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "Complex", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) (complex) asparagine;Complex", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=6S0B&bu=0&command=select+.A:428;+center+selection;+zoom+selection" }, "start_pos": 428, "start_aa": "Asn", "end_pos": 428, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn428", "evidence": [ { "id": "P27918", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P27918#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "19139490", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19139490" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "6S0B", "database": "PDB", "url": "https://www.rcsb.org/structure/6S0B" }, { "id": "8Q6R", "database": "PDB", "url": "https://www.rcsb.org/structure/8Q6R" } ], "filter_code": "001000000000000000000.10000000000000.00.01001", "uniprot_canonical_ac": "P27918-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 1253, "start_aa": "Asn", "end_pos": 1253, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn1253", "evidence": [ { "id": "O43157", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O43157#ptm_processing" }, { "id": "19349973", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19349973" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "O43157-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 60, "start_aa": "Asn", "end_pos": 60, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn60", "evidence": [ { "id": "P14151", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P14151#ptm_processing" }, { "id": "28011641", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/28011641" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "3CFW", "database": "PDB", "url": "https://www.rcsb.org/sequence/3CFW" }, { "id": "19349973", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19349973" }, { "id": "28489325", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/28489325" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.00010000000000.00.01101", "uniprot_canonical_ac": "P14151-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 1125, "start_aa": "Asn", "end_pos": 1125, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn1125", "evidence": [ { "id": "Q16706", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q16706#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "Q16706-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 78, "start_aa": "Asn", "end_pos": 78, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn78", "evidence": [ { "id": "Q16706", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q16706#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "Q16706-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=8UN7&bu=0&command=select+.B:137;+center+selection;+zoom+selection" }, "start_pos": 137, "start_aa": "Asn", "end_pos": 137, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn137", "evidence": [ { "id": "P55083", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P55083#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "8UN7", "database": "PDB", "url": "https://www.rcsb.org/structure/8UN7" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "P55083-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 442, "start_aa": "Asn", "end_pos": 442, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn442", "evidence": [ { "id": "Q12866", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q12866#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "Q12866-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 1809, "start_aa": "Asn", "end_pos": 1809, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn1809", "evidence": [ { "id": "P24821", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P24821#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P24821-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "Complex", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) (complex) asparagine;Complex", "icn3d_view": {}, "start_pos": 202, "start_aa": "Asn", "end_pos": 202, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn202", "evidence": [ { "id": "Q15223", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q15223#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "21980294", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/21980294" }, { "id": "22902367", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/22902367" }, { "id": "19139490", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19139490" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" } ], "filter_code": "001000000000000000000.10000000000000.00.01001", "uniprot_canonical_ac": "Q15223-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 165, "start_aa": "Asn", "end_pos": 165, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn165", "evidence": [ { "id": "P05543", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P05543#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P05543-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "Complex", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) (complex) asparagine;Complex", "icn3d_view": {}, "start_pos": 36, "start_aa": "Asn", "end_pos": 36, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn36", "evidence": [ { "id": "P05543", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P05543#ptm_processing" }, { "id": "19838169", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19838169" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.10000000000000.00.01000", "uniprot_canonical_ac": "P05543-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=4KKI&bu=0&command=select+.A:193;+center+selection;+zoom+selection" }, "start_pos": 216, "start_aa": "Asn", "end_pos": 216, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn216", "evidence": [ { "id": "P20061", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P20061#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "16740002", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16740002" }, { "id": "23846701", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23846701" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "4KKI", "database": "PDB", "url": "https://www.rcsb.org/structure/4KKI" }, { "id": "4KKJ", "database": "PDB", "url": "https://www.rcsb.org/structure/4KKJ" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "P20061-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=5AB0&bu=0&command=select+.A:119;+center+selection;+zoom+selection" }, "start_pos": 119, "start_aa": "Asn", "end_pos": 119, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn119", "evidence": [ { "id": "Q6P179", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q6P179#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "5AB0", "database": "PDB", "url": "https://www.rcsb.org/structure/5AB0" }, { "id": "5CU5", "database": "PDB", "url": "https://www.rcsb.org/structure/5CU5" }, { "id": "5J6S", "database": "PDB", "url": "https://www.rcsb.org/structure/5J6S" }, { "id": "7NSK", "database": "PDB", "url": "https://www.rcsb.org/structure/7NSK" }, { "id": "7NUP", "database": "PDB", "url": "https://www.rcsb.org/structure/7NUP" }, { "id": "7P7P", "database": "PDB", "url": "https://www.rcsb.org/structure/7P7P" }, { "id": "7PFS", "database": "PDB", "url": "https://www.rcsb.org/structure/7PFS" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "Q6P179-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 614, "start_aa": "Asn", "end_pos": 614, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn614", "evidence": [ { "id": "P00488", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P00488#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P00488-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 126, "start_aa": "Asn", "end_pos": 126, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn126", "evidence": [ { "id": "Q03591", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q03591#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "Q03591-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 194, "start_aa": "Asn", "end_pos": 194, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn194", "evidence": [ { "id": "Q03591", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q03591#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "Q03591-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 179, "start_aa": "Asn", "end_pos": 179, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn179", "evidence": [ { "id": "Q14314", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q14314#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "Q14314-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 336, "start_aa": "Asn", "end_pos": 336, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn336", "evidence": [ { "id": "Q14314", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q14314#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "Q14314-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 542, "start_aa": "Asn", "end_pos": 542, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn542", "evidence": [ { "id": "P05067", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P05067#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P05067-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true, "automatic_literature_mining": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=7Y1R&bu=0&command=select+.B:53;+center+selection;+zoom+selection" }, "start_pos": 82, "start_aa": "Asn", "end_pos": 82, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn82", "evidence": [ { "id": "P01137", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P01137#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "5FFO", "database": "PDB", "url": "https://www.rcsb.org/sequence/5FFO" }, { "id": "28117447", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/28117447" }, { "id": "16263699", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16263699" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "1448117", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/1448117" }, { "id": "GLY_000481", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000481" }, { "id": "7Y1R", "database": "PDB", "url": "https://www.rcsb.org/structure/7Y1R" }, { "id": "8REW", "database": "PDB", "url": "https://www.rcsb.org/structure/8REW" }, { "id": "8UDZ", "database": "PDB", "url": "https://www.rcsb.org/structure/8UDZ" } ], "mining_tool": "GlycoSiteMiner_1.0", "mining_tool_list": [ { "label": "GlycoSiteMiner_1.0" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P01137-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=1LYA&bu=0&command=select+.D:199;+center+selection;+zoom+selection" }, "start_pos": 263, "start_aa": "Asn", "end_pos": 263, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn263", "evidence": [ { "id": "29741879", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/29741879" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "P07339", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P07339#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "12754519", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/12754519" }, { "id": "8393577", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/8393577" }, { "id": "16263699", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16263699" }, { "id": "A0A1B0GVD5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A1B0GVD5#ptm_processing" }, { "id": "PIRSR633144-3", "database": "PIR Site Rule", "url": "https://www.uniprot.org/unirule/PIRSR633144-3" }, { "id": "A0A1B0GV23", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A1B0GV23#ptm_processing" }, { "id": "C9JH19", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/C9JH19#ptm_processing" }, { "id": "A0A1B0GVP3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A1B0GVP3#ptm_processing" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "1LYA", "database": "PDB", "url": "https://www.rcsb.org/structure/1LYA" }, { "id": "1LYB", "database": "PDB", "url": "https://www.rcsb.org/structure/1LYB" }, { "id": "4OC6", "database": "PDB", "url": "https://www.rcsb.org/structure/4OC6" }, { "id": "4OD9", "database": "PDB", "url": "https://www.rcsb.org/structure/4OD9" }, { "id": "6QBG", "database": "PDB", "url": "https://www.rcsb.org/structure/6QBG" }, { "id": "6QBH", "database": "PDB", "url": "https://www.rcsb.org/structure/6QBH" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P07339-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true, "automatic_literature_mining": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=6TAV&bu=0&command=select+.A:1424;+center+selection;+zoom+selection" }, "start_pos": 1424, "start_aa": "Asn", "end_pos": 1424, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn1424", "evidence": [ { "id": "24279413", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24279413" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "P01023", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P01023#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "14760718", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/14760718" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "19139490", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19139490" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "24285556", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24285556" }, { "id": "GLY_000481", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000481" }, { "id": "6TAV", "database": "PDB", "url": "https://www.rcsb.org/structure/6TAV" }, { "id": "7O7L", "database": "PDB", "url": "https://www.rcsb.org/structure/7O7L" }, { "id": "7O7N", "database": "PDB", "url": "https://www.rcsb.org/structure/7O7N" }, { "id": "7O7S", "database": "PDB", "url": "https://www.rcsb.org/structure/7O7S" }, { "id": "7O7M", "database": "PDB", "url": "https://www.rcsb.org/structure/7O7M" } ], "mining_tool": "GlycoSiteMiner_1.0", "mining_tool_list": [ { "label": "GlycoSiteMiner_1.0" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P01023-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=6TAV&bu=0&command=select+.D:247;+center+selection;+zoom+selection" }, "start_pos": 247, "start_aa": "Asn", "end_pos": 247, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn247", "evidence": [ { "id": "P01023", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P01023#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "6203908", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/6203908" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "6TAV", "database": "PDB", "url": "https://www.rcsb.org/structure/6TAV" }, { "id": "7O7L", "database": "PDB", "url": "https://www.rcsb.org/structure/7O7L" }, { "id": "7O7N", "database": "PDB", "url": "https://www.rcsb.org/structure/7O7N" }, { "id": "7O7O", "database": "PDB", "url": "https://www.rcsb.org/structure/7O7O" }, { "id": "7O7P", "database": "PDB", "url": "https://www.rcsb.org/structure/7O7P" }, { "id": "7O7Q", "database": "PDB", "url": "https://www.rcsb.org/structure/7O7Q" }, { "id": "7O7S", "database": "PDB", "url": "https://www.rcsb.org/structure/7O7S" }, { "id": "7O7R", "database": "PDB", "url": "https://www.rcsb.org/structure/7O7R" }, { "id": "7O7M", "database": "PDB", "url": "https://www.rcsb.org/structure/7O7M" }, { "id": "7VOO", "database": "PDB", "url": "https://www.rcsb.org/structure/7VOO" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P01023-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true, "automatic_literature_mining": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=6TAV&bu=0&command=select+.C:396;+center+selection;+zoom+selection" }, "start_pos": 396, "start_aa": "Asn", "end_pos": 396, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn396", "evidence": [ { "id": "P01023", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P01023#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "6203908", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/6203908" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "24285556", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24285556" }, { "id": "GLY_000481", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000481" }, { "id": "6TAV", "database": "PDB", "url": "https://www.rcsb.org/structure/6TAV" }, { "id": "7O7L", "database": "PDB", "url": "https://www.rcsb.org/structure/7O7L" }, { "id": "7O7N", "database": "PDB", "url": "https://www.rcsb.org/structure/7O7N" }, { "id": "7O7P", "database": "PDB", "url": "https://www.rcsb.org/structure/7O7P" }, { "id": "7O7Q", "database": "PDB", "url": "https://www.rcsb.org/structure/7O7Q" }, { "id": "7O7S", "database": "PDB", "url": "https://www.rcsb.org/structure/7O7S" }, { "id": "7O7R", "database": "PDB", "url": "https://www.rcsb.org/structure/7O7R" }, { "id": "7O7M", "database": "PDB", "url": "https://www.rcsb.org/structure/7O7M" }, { "id": "7VOO", "database": "PDB", "url": "https://www.rcsb.org/structure/7VOO" } ], "mining_tool": "GlycoSiteMiner_1.0", "mining_tool_list": [ { "label": "GlycoSiteMiner_1.0" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P01023-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=6TAV&bu=0&command=select+.D:410;+center+selection;+zoom+selection" }, "start_pos": 410, "start_aa": "Asn", "end_pos": 410, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn410", "evidence": [ { "id": "P01023", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P01023#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "6203908", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/6203908" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "6TAV", "database": "PDB", "url": "https://www.rcsb.org/structure/6TAV" }, { "id": "7O7N", "database": "PDB", "url": "https://www.rcsb.org/structure/7O7N" }, { "id": "7O7O", "database": "PDB", "url": "https://www.rcsb.org/structure/7O7O" }, { "id": "7O7P", "database": "PDB", "url": "https://www.rcsb.org/structure/7O7P" }, { "id": "7O7Q", "database": "PDB", "url": "https://www.rcsb.org/structure/7O7Q" }, { "id": "7O7S", "database": "PDB", "url": "https://www.rcsb.org/structure/7O7S" }, { "id": "7O7R", "database": "PDB", "url": "https://www.rcsb.org/structure/7O7R" }, { "id": "7O7M", "database": "PDB", "url": "https://www.rcsb.org/structure/7O7M" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P01023-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "Complex", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) (complex) asparagine;Complex", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=6TAV&bu=0&command=select+.C:55;+center+selection;+zoom+selection" }, "start_pos": 55, "start_aa": "Asn", "end_pos": 55, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn55", "evidence": [ { "id": "P01023", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P01023#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "19139490", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19139490" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "6TAV", "database": "PDB", "url": "https://www.rcsb.org/structure/6TAV" }, { "id": "7O7L", "database": "PDB", "url": "https://www.rcsb.org/structure/7O7L" }, { "id": "7O7N", "database": "PDB", "url": "https://www.rcsb.org/structure/7O7N" }, { "id": "7O7O", "database": "PDB", "url": "https://www.rcsb.org/structure/7O7O" }, { "id": "7O7P", "database": "PDB", "url": "https://www.rcsb.org/structure/7O7P" }, { "id": "7O7Q", "database": "PDB", "url": "https://www.rcsb.org/structure/7O7Q" }, { "id": "7O7S", "database": "PDB", "url": "https://www.rcsb.org/structure/7O7S" }, { "id": "7O7R", "database": "PDB", "url": "https://www.rcsb.org/structure/7O7R" }, { "id": "7O7M", "database": "PDB", "url": "https://www.rcsb.org/structure/7O7M" } ], "filter_code": "001000000000000000000.10000000000000.00.01000", "uniprot_canonical_ac": "P01023-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=7O7L&bu=0&command=select+.C:869;+center+selection;+zoom+selection" }, "start_pos": 869, "start_aa": "Asn", "end_pos": 869, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn869", "evidence": [ { "id": "24279413", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24279413" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "P01023", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P01023#ptm_processing" }, { "id": "14760718", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/14760718" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "7O7L", "database": "PDB", "url": "https://www.rcsb.org/structure/7O7L" }, { "id": "7O7N", "database": "PDB", "url": "https://www.rcsb.org/structure/7O7N" }, { "id": "7O7O", "database": "PDB", "url": "https://www.rcsb.org/structure/7O7O" }, { "id": "7O7S", "database": "PDB", "url": "https://www.rcsb.org/structure/7O7S" }, { "id": "7O7M", "database": "PDB", "url": "https://www.rcsb.org/structure/7O7M" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "P01023-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=7O7N&bu=0&command=select+.D:991;+center+selection;+zoom+selection" }, "start_pos": 991, "start_aa": "Asn", "end_pos": 991, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn991", "evidence": [ { "id": "P01023", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P01023#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "12754519", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/12754519" }, { "id": "6203908", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/6203908" }, { "id": "7O7N", "database": "PDB", "url": "https://www.rcsb.org/structure/7O7N" }, { "id": "7O7O", "database": "PDB", "url": "https://www.rcsb.org/structure/7O7O" }, { "id": "7O7S", "database": "PDB", "url": "https://www.rcsb.org/structure/7O7S" }, { "id": "7O7M", "database": "PDB", "url": "https://www.rcsb.org/structure/7O7M" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "P01023-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 179, "start_aa": "Asn", "end_pos": 179, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn179", "evidence": [ { "id": "P04217", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P04217#ptm_processing" }, { "id": "14760718", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/14760718" }, { "id": "3458201", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/3458201" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P04217-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 363, "start_aa": "Asn", "end_pos": 363, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn363", "evidence": [ { "id": "P04217", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P04217#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "3458201", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/3458201" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P04217-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 371, "start_aa": "Asn", "end_pos": 371, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn371", "evidence": [ { "id": "P04217", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P04217#ptm_processing" }, { "id": "3458201", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/3458201" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P04217-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "Complex", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) (complex) asparagine;Complex", "icn3d_view": {}, "start_pos": 44, "start_aa": "Asn", "end_pos": 44, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn44", "evidence": [ { "id": "P04217", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P04217#ptm_processing" }, { "id": "19838169", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19838169" }, { "id": "14760718", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/14760718" }, { "id": "3458201", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/3458201" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.10000000000000.00.01001", "uniprot_canonical_ac": "P04217-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=2EC8&bu=0&command=select+.A:130;+center+selection;+zoom+selection" }, "start_pos": 130, "start_aa": "Asn", "end_pos": 130, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn130", "evidence": [ { "id": "29741879", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/29741879" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "P10721", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P10721#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "17662946", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/17662946" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "2EC8", "database": "PDB", "url": "https://www.rcsb.org/structure/2EC8" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P10721-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=4BXK&bu=0&command=select+.B:480;+center+selection;+zoom+selection" }, "start_pos": 509, "start_aa": "Asn", "end_pos": 509, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn509", "evidence": [ { "id": "P12821", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P12821#ptm_processing" }, { "id": "26403559", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/26403559" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "20826823", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/20826823" }, { "id": "9013598", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/9013598" }, { "id": "16476442", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16476442" }, { "id": "3NXQ", "database": "PDB", "url": "https://www.rcsb.org/sequence/3NXQ" }, { "id": "A0A0A0MSN4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A0A0MSN4#ptm_processing" }, { "id": "PIRSR601548-5", "database": "PIR Site Rule", "url": "https://www.uniprot.org/unirule/PIRSR601548-5" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "4BXK", "database": "PDB", "url": "https://www.rcsb.org/structure/4BXK" }, { "id": "4UFA", "database": "PDB", "url": "https://www.rcsb.org/structure/4UFA" }, { "id": "5AM8", "database": "PDB", "url": "https://www.rcsb.org/structure/5AM8" }, { "id": "5AMA", "database": "PDB", "url": "https://www.rcsb.org/structure/5AMA" }, { "id": "6F9V", "database": "PDB", "url": "https://www.rcsb.org/structure/6F9V" }, { "id": "6ZPT", "database": "PDB", "url": "https://www.rcsb.org/structure/6ZPT" }, { "id": "8QFX", "database": "PDB", "url": "https://www.rcsb.org/structure/8QFX" }, { "id": "9GBP", "database": "PDB", "url": "https://www.rcsb.org/structure/9GBP" }, { "id": "9GBQ", "database": "PDB", "url": "https://www.rcsb.org/structure/9GBQ" }, { "id": "9GBR", "database": "PDB", "url": "https://www.rcsb.org/structure/9GBR" }, { "id": "9GBS", "database": "PDB", "url": "https://www.rcsb.org/structure/9GBS" }, { "id": "9H1A", "database": "PDB", "url": "https://www.rcsb.org/structure/9H1A" }, { "id": "9QAU", "database": "PDB", "url": "https://www.rcsb.org/structure/9QAU" }, { "id": "9SS9", "database": "PDB", "url": "https://www.rcsb.org/structure/9SS9" }, { "id": "9SS8", "database": "PDB", "url": "https://www.rcsb.org/structure/9SS8" }, { "id": "9QAV", "database": "PDB", "url": "https://www.rcsb.org/structure/9QAV" } ], "filter_code": "001000000000000000000.00010000000000.00.01101", "uniprot_canonical_ac": "P12821-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "Complex", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) (complex) asparagine;Complex", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=1O8A&bu=0&command=select+.A:90;+center+selection;+zoom+selection" }, "start_pos": 695, "start_aa": "Asn", "end_pos": 695, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn695", "evidence": [ { "id": "A0A0A0MSN4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A0A0MSN4#ptm_processing" }, { "id": "PIRSR601548-10", "database": "PIR Site Rule", "url": "https://www.uniprot.org/unirule/PIRSR601548-10" }, { "id": "P12821", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P12821#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "9013598", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/9013598" }, { "id": "1O8A", "database": "PDB", "url": "https://www.rcsb.org/structure/1O8A" }, { "id": "7Q4C", "database": "PDB", "url": "https://www.rcsb.org/structure/7Q4C" }, { "id": "7Q3Y", "database": "PDB", "url": "https://www.rcsb.org/structure/7Q3Y" }, { "id": "9CLX", "database": "PDB", "url": "https://www.rcsb.org/structure/9CLX" }, { "id": "9D55", "database": "PDB", "url": "https://www.rcsb.org/structure/9D55" }, { "id": "9D5M", "database": "PDB", "url": "https://www.rcsb.org/structure/9D5M" }, { "id": "9D5S", "database": "PDB", "url": "https://www.rcsb.org/structure/9D5S" } ], "filter_code": "001000000000000000000.10000000000000.00.01001", "uniprot_canonical_ac": "P12821-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "Complex", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) (complex) asparagine;Complex", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=1O8A&bu=0&command=select+.A:109;+center+selection;+zoom+selection" }, "start_pos": 714, "start_aa": "Asn", "end_pos": 714, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn714", "evidence": [ { "id": "A0A0A0MSN4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A0A0MSN4#ptm_processing" }, { "id": "PIRSR601548-10", "database": "PIR Site Rule", "url": "https://www.uniprot.org/unirule/PIRSR601548-10" }, { "id": "P12821", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P12821#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "9013598", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/9013598" }, { "id": "23056909", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23056909" }, { "id": "4APH", "database": "PDB", "url": "https://www.rcsb.org/sequence/4APH" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "1O8A", "database": "PDB", "url": "https://www.rcsb.org/structure/1O8A" }, { "id": "1UZF", "database": "PDB", "url": "https://www.rcsb.org/structure/1UZF" }, { "id": "2IUX", "database": "PDB", "url": "https://www.rcsb.org/structure/2IUX" } ], "filter_code": "001000000000000000000.10000000000000.00.01001", "uniprot_canonical_ac": "P12821-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 106, "start_aa": "Asn", "end_pos": 106, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn106", "evidence": [ { "id": "P01011", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P01011#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "12754519", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/12754519" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P01011-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 127, "start_aa": "Asn", "end_pos": 127, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn127", "evidence": [ { "id": "P01011", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P01011#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P01011-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 186, "start_aa": "Asn", "end_pos": 186, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn186", "evidence": [ { "id": "P01011", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P01011#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P01011-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 271, "start_aa": "Asn", "end_pos": 271, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn271", "evidence": [ { "id": "P01011", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P01011#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P01011-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 33, "start_aa": "Asn", "end_pos": 33, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn33", "evidence": [ { "id": "P01011", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P01011#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "P01011-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 93, "start_aa": "Asn", "end_pos": 93, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn93", "evidence": [ { "id": "P01011", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P01011#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "14760718", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/14760718" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "12754519", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/12754519" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P01011-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 126, "start_aa": "Asn", "end_pos": 126, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn126", "evidence": [ { "id": "P08697", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P08697#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P08697-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 295, "start_aa": "Asn", "end_pos": 295, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn295", "evidence": [ { "id": "P08697", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P08697#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "P08697-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 309, "start_aa": "Asn", "end_pos": 309, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn309", "evidence": [ { "id": "P08697", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P08697#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P08697-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 237, "start_aa": "Asn", "end_pos": 237, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn237", "evidence": [ { "id": "O15204", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/O15204#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "O15204-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 103, "start_aa": "Asn", "end_pos": 103, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn103", "evidence": [ { "id": "P02763", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P02763#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "14760718", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/14760718" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "1567356", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/1567356" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "P02763-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 33, "start_aa": "Asn", "end_pos": 33, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn33", "evidence": [ { "id": "19838169", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19838169" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "P02763", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P02763#ptm_processing" }, { "id": "14760718", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/14760718" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "12754519", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/12754519" }, { "id": "15253437", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/15253437" }, { "id": "1567356", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/1567356" }, { "id": "15084671", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/15084671" }, { "id": "22171320", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/22171320" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P02763-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 56, "start_aa": "Asn", "end_pos": 56, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn56", "evidence": [ { "id": "P02763", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P02763#ptm_processing" }, { "id": "14760718", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/14760718" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "4603214", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/4603214" }, { "id": "1567356", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/1567356" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P02763-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 72, "start_aa": "Asn", "end_pos": 72, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn72", "evidence": [ { "id": "24279413", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24279413" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "P02763", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P02763#ptm_processing" }, { "id": "19838169", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19838169" }, { "id": "14760718", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/14760718" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "15253437", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/15253437" }, { "id": "1567356", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/1567356" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P02763-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 93, "start_aa": "Asn", "end_pos": 93, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn93", "evidence": [ { "id": "P02763", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P02763#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "14760718", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/14760718" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "4603214", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/4603214" }, { "id": "15253437", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/15253437" }, { "id": "1567356", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/1567356" }, { "id": "16740002", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16740002" }, { "id": "15084671", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/15084671" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P02763-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "Complex", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true, "automatic_literature_mining": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) (complex) asparagine;Complex", "icn3d_view": {}, "start_pos": 107, "start_aa": "Asn", "end_pos": 107, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn107", "evidence": [ { "id": "P01009", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P01009#ptm_processing" }, { "id": "19838169", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19838169" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "16622833", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16622833" }, { "id": "19139490", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19139490" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "GLY_000481", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000481" }, { "id": "29405331", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/29405331" }, { "id": "29427759", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/29427759" } ], "mining_tool": "RLIMS-G_1.0;GlycoSiteMiner_1.0", "mining_tool_list": [ { "label": "RLIMS-G_1.0" }, { "label": "GlycoSiteMiner_1.0" } ], "filter_code": "001000000000000000000.10000000000000.00.01000", "uniprot_canonical_ac": "P01009-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true, "automatic_literature_mining": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=5IO1&bu=0&command=select+.B:247;+center+selection;+zoom+selection" }, "start_pos": 271, "start_aa": "Asn", "end_pos": 271, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn271", "evidence": [ { "id": "24279413", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24279413" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "P01009", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P01009#ptm_processing" }, { "id": "12754519", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/12754519" }, { "id": "19838169", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19838169" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "14760718", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/14760718" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "16622833", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16622833" }, { "id": "19139490", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19139490" }, { "id": "15084671", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/15084671" }, { "id": "22171320", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/22171320" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "GLY_000481", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000481" }, { "id": "29405331", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/29405331" }, { "id": "38455847", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/38455847" }, { "id": "5IO1", "database": "PDB", "url": "https://www.rcsb.org/structure/5IO1" } ], "mining_tool": "GlycoSiteMiner_1.0", "mining_tool_list": [ { "label": "GlycoSiteMiner_1.0" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P01009-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true, "automatic_literature_mining": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 70, "start_aa": "Asn", "end_pos": 70, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn70", "evidence": [ { "id": "19838169", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19838169" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "P01009", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P01009#ptm_processing" }, { "id": "12754519", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/12754519" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "14760718", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/14760718" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "16622833", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16622833" }, { "id": "15084671", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/15084671" }, { "id": "22171320", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/22171320" }, { "id": "16263699", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16263699" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "GLY_000481", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000481" }, { "id": "29405331", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/29405331" }, { "id": "2016749", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/2016749" } ], "mining_tool": "GlycoSiteMiner_1.0", "mining_tool_list": [ { "label": "GlycoSiteMiner_1.0" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P01009-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=5E6R&bu=0&command=select+.B:190;+center+selection;+zoom+selection" }, "start_pos": 212, "start_aa": "Asn", "end_pos": 212, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn212", "evidence": [ { "id": "P05107", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P05107#ptm_processing" }, { "id": "19349973", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19349973" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "26936951", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/26936951" }, { "id": "5ES4", "database": "PDB", "url": "https://www.rcsb.org/sequence/5ES4" }, { "id": "5E6S", "database": "PDB", "url": "https://www.rcsb.org/sequence/5E6S" }, { "id": "5E6U", "database": "PDB", "url": "https://www.rcsb.org/sequence/5E6U" }, { "id": "5E6R", "database": "PDB", "url": "https://www.rcsb.org/sequence/5E6R" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "7P2D", "database": "PDB", "url": "https://www.rcsb.org/structure/7P2D" }, { "id": "7USL", "database": "PDB", "url": "https://www.rcsb.org/structure/7USL" }, { "id": "9T5Z", "database": "PDB", "url": "https://www.rcsb.org/structure/9T5Z" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P05107-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 105, "start_aa": "Asn", "end_pos": 105, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn105", "evidence": [ { "id": "P23471", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P23471#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" } ], "uniprot_canonical_ac": "P23471-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 658, "start_aa": "Asn", "end_pos": 658, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn658", "evidence": [ { "id": "P16112", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P16112#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" } ], "uniprot_canonical_ac": "P16112-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=7P32&bu=0&command=select+.AAA:390;+center+selection;+zoom+selection" }, "start_pos": 390, "start_aa": "Asn", "end_pos": 390, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn390", "evidence": [ { "id": "17293352", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/17293352" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "29741879", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/29741879" }, { "id": "P10253", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P10253#ptm_processing" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "8435067", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/8435067" }, { "id": "29061980", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/29061980" }, { "id": "5NN3", "database": "PDB", "url": "https://www.rcsb.org/sequence/5NN3" }, { "id": "5KZW", "database": "PDB", "url": "https://www.rcsb.org/sequence/5KZW" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "7P32", "database": "PDB", "url": "https://www.rcsb.org/structure/7P32" }, { "id": "7P32", "database": "PDB", "url": "https://www.rcsb.org/structure/7P32" }, { "id": "9GTW", "database": "PDB", "url": "https://www.rcsb.org/structure/9GTW" }, { "id": "9GTW", "database": "PDB", "url": "https://www.rcsb.org/structure/9GTW" }, { "id": "7P32|AAA|390", "database": "", "url": "" }, { "id": "9GTW|A|390", "database": "", "url": "" } ], "uniprot_canonical_ac": "P10253-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 1755, "start_aa": "Asn", "end_pos": 1755, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn1755", "evidence": [ { "id": "P98160", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P98160#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "16335952", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16335952" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" } ], "uniprot_canonical_ac": "P98160-1" } ], "record_id": "pubmed.16335952", "abstract": "", "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 313 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 541 }, { "field": "total_sites", "count": 373 }, { "field": "n_linked_sites", "count": 373 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 373 }, { "field": "exact_n_linked_sites", "count": 373 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl", "filter_code", "uniprot_canonical_ac", "icn3d_view.label", "icn3d_view.url", "mining_tool" ] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 541 }, { "field": "total_sites", "count": 373 }, { "field": "n_linked_sites", "count": 373 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 373 }, { "field": "exact_n_linked_sites", "count": 373 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl", "filter_code", "uniprot_canonical_ac", "icn3d_view.label", "icn3d_view.url", "mining_tool" ] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 42 }, { "field": "total_sites", "count": 41 }, { "field": "n_linked_sites", "count": 41 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 41 }, { "field": "exact_n_linked_sites", "count": 41 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl", "filter_code", "uniprot_canonical_ac", "icn3d_view.label", "icn3d_view.url", "mining_tool" ] } ] }, { "title": "Characterization of the N-deacetylase domain from the heparan sulfate N-deacetylase/N-sulfotransferase 2.", "journal": "Biochemical and biophysical research communications", "date": "2006", "authors": "Duncan MB, Liu M, Fox C, Liu J", "reference": { "type": "PubMed", "id": "16343444", "url": "https://pubmed.ncbi.nlm.nih.gov/16343444" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P98160-1", "protein_name": "Basement membrane-specific heparan sulfate proteoglycan core protein", "gene_name": "HSPG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75056-1", "protein_name": "Syndecan-3", "gene_name": "SDC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00468-1", "protein_name": "Agrin", "gene_name": "AGRN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51654-1", "protein_name": "Glypican-3", "gene_name": "GPC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60243-1", "protein_name": "Heparan-sulfate 6-O-sulfotransferase 1", "gene_name": "HS6ST1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IZT8-1", "protein_name": "Heparan sulfate glucosamine 3-O-sulfotransferase 5", "gene_name": "HS3ST5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y661-1", "protein_name": "Heparan sulfate glucosamine 3-O-sulfotransferase 4", "gene_name": "HS3ST4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y278-1", "protein_name": "Heparan sulfate glucosamine 3-O-sulfotransferase 2", "gene_name": "HS3ST2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q76EJ3-1", "protein_name": "Nucleotide sugar transporter SLC35D2", "gene_name": "SLC35D2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18827-1", "protein_name": "Syndecan-1", "gene_name": "SDC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31431-1", "protein_name": "Syndecan-4", "gene_name": "SDC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y625-1", "protein_name": "Glypican-6", "gene_name": "GPC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52848-1", "protein_name": "Bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 1", "gene_name": "NDST1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95803-1", "protein_name": "Bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 3", "gene_name": "NDST3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N158-1", "protein_name": "Glypican-2", "gene_name": "GPC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94923-1", "protein_name": "D-glucuronyl C5-epimerase", "gene_name": "GLCE", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43909-1", "protein_name": "Exostosin-like 3", "gene_name": "EXTL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P34741-1", "protein_name": "Syndecan-2", "gene_name": "SDC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16394-1", "protein_name": "Exostosin-1", "gene_name": "EXT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78333-1", "protein_name": "Glypican-5", "gene_name": "GPC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35052-1", "protein_name": "Glypican-1", "gene_name": "GPC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96MM7-1", "protein_name": "Heparan-sulfate 6-O-sulfotransferase 2", "gene_name": "HS6ST2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBQ6-1", "protein_name": "Exostosin-like 2", "gene_name": "EXTL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14792-1", "protein_name": "Heparan sulfate glucosamine 3-O-sulfotransferase 1", "gene_name": "HS3ST1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y662-1", "protein_name": "Heparan sulfate glucosamine 3-O-sulfotransferase 3B1", "gene_name": "HS3ST3B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52849-1", "protein_name": "Bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 2", "gene_name": "NDST2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H3R1-1", "protein_name": "N-heparan sulfate sulfotransferase 4", "gene_name": "NDST4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75487-1", "protein_name": "Glypican-4", "gene_name": "GPC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93063-1", "protein_name": "Exostosin-2", "gene_name": "EXT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7LGA3-1", "protein_name": "Heparan sulfate 2-O-sulfotransferase 1", "gene_name": "HS2ST1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IZP7-1", "protein_name": "Heparan-sulfate 6-O-sulfotransferase 3", "gene_name": "HS6ST3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y663-1", "protein_name": "Heparan sulfate glucosamine 3-O-sulfotransferase 3A1", "gene_name": "HS3ST3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96QI5-1", "protein_name": "Heparan sulfate glucosamine 3-O-sulfotransferase 6", "gene_name": "HS3ST6", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P98160", "url": "https://www.uniprot.org/uniprotkb/P98160" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.16343444", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 33 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Ligand-binding specificities of laminin-binding integrins: a comprehensive survey of laminin-integrin interactions using recombinant alpha3beta1, alpha6beta1, alpha7beta1 and alpha6beta4 integrins.", "journal": "Matrix biology : journal of the International Society for Matrix Biology", "date": "2006", "authors": "Nishiuchi R, Takagi J, Hayashi M, Ido H, Yagi Y, Sanzen N, Tsuji T, Yamada M, Sekiguchi K", "reference": { "type": "PubMed", "id": "16413178", "url": "https://pubmed.ncbi.nlm.nih.gov/16413178" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P98160-1", "protein_name": "Basement membrane-specific heparan sulfate proteoglycan core protein", "gene_name": "HSPG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16144-1", "protein_name": "Integrin beta-4", "gene_name": "ITGB4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53420-1", "protein_name": "Collagen alpha-4(IV) chain", "gene_name": "COL4A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14543-1", "protein_name": "Nidogen-1", "gene_name": "NID1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14112-1", "protein_name": "Nidogen-2", "gene_name": "NID2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14031-1", "protein_name": "Collagen alpha-6(IV) chain", "gene_name": "COL4A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02462-1", "protein_name": "Collagen alpha-1(IV) chain", "gene_name": "COL4A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08572-1", "protein_name": "Collagen alpha-2(IV) chain", "gene_name": "COL4A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01955-1", "protein_name": "Collagen alpha-3(IV) chain", "gene_name": "COL4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07942-1", "protein_name": "Laminin subunit beta-1", "gene_name": "LAMB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24043-1", "protein_name": "Laminin subunit alpha-2", "gene_name": "LAMA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25391-1", "protein_name": "Laminin subunit alpha-1", "gene_name": "LAMA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6N6-1", "protein_name": "Laminin subunit gamma-3", "gene_name": "LAMC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13753-1", "protein_name": "Laminin subunit gamma-2", "gene_name": "LAMC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11047-1", "protein_name": "Laminin subunit gamma-1", "gene_name": "LAMC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13683-1", "protein_name": "Integrin alpha-7", "gene_name": "ITGA7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13751-1", "protein_name": "Laminin subunit beta-3", "gene_name": "LAMB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16787-2", "protein_name": "Laminin subunit alpha-3", "gene_name": "LAMA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16363-1", "protein_name": "Laminin subunit alpha-4", "gene_name": "LAMA4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15230-1", "protein_name": "Laminin subunit alpha-5", "gene_name": "LAMA5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26006-2", "protein_name": "Integrin alpha-3", "gene_name": "ITGA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06756-1", "protein_name": "Integrin alpha-V", "gene_name": "ITGAV", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05556-1", "protein_name": "Integrin beta-1", "gene_name": "ITGB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29400-1", "protein_name": "Collagen alpha-5(IV) chain", "gene_name": "COL4A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02388-1", "protein_name": "Collagen alpha-1(VII) chain", "gene_name": "COL7A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23229-1", "protein_name": "Integrin alpha-6", "gene_name": "ITGA6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17301-1", "protein_name": "Integrin alpha-2", "gene_name": "ITGA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P56199-1", "protein_name": "Integrin alpha-1", "gene_name": "ITGA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55268-1", "protein_name": "Laminin subunit beta-2", "gene_name": "LAMB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39060-3", "protein_name": "Collagen alpha-1(XVIII) chain", "gene_name": "COL18A1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P98160", "url": "https://www.uniprot.org/uniprotkb/P98160" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.16413178", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 30 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Involvement of tenascin-C and PG-M/versican in flexor tenosynovial pathology of idiopathic carpal tunnel syndrome.", "journal": "Histology and histopathology", "date": "2006", "authors": "Tsujii M, Hirata H, Yoshida T, Imanaka-Yoshida K, Morita A, Uchida A", "reference": { "type": "PubMed", "id": "16493581", "url": "https://pubmed.ncbi.nlm.nih.gov/16493581" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P98160-1", "protein_name": "Basement membrane-specific heparan sulfate proteoglycan core protein", "gene_name": "HSPG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51884-1", "protein_name": "Lumican", "gene_name": "LUM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02452-1", "protein_name": "Collagen alpha-1(I) chain", "gene_name": "COL1A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18084-1", "protein_name": "Integrin beta-5", "gene_name": "ITGB5", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00468-1", "protein_name": "Agrin", "gene_name": "AGRN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02751-15", "protein_name": "Fibronectin", "gene_name": "FN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P21810-1", "protein_name": "Biglycan", "gene_name": "BGN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92752-1", "protein_name": "Tenascin-R", "gene_name": "TNR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQP3-1", "protein_name": "Tenascin-N", "gene_name": "TNN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53420-1", "protein_name": "Collagen alpha-4(IV) chain", "gene_name": "COL4A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q06828-1", "protein_name": "Fibromodulin", "gene_name": "FMOD", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75096-1", "protein_name": "Low-density lipoprotein receptor-related protein 4", "gene_name": "LRP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10915-1", "protein_name": "Hyaluronan and proteoglycan link protein 1", "gene_name": "HAPLN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16112-1", "protein_name": "Aggrecan core protein", "gene_name": "ACAN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P21815-1", "protein_name": "Integrin-binding sialoprotein", "gene_name": "IBSP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49747-1", "protein_name": "Cartilage oligomeric matrix protein", "gene_name": "COMP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXN1-1", "protein_name": "Asporin", "gene_name": "ASPN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12110-1", "protein_name": "Collagen alpha-2(VI) chain", "gene_name": "COL6A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14031-1", "protein_name": "Collagen alpha-6(IV) chain", "gene_name": "COL4A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20908-1", "protein_name": "Collagen alpha-1(V) chain", "gene_name": "COL5A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02462-1", "protein_name": "Collagen alpha-1(IV) chain", "gene_name": "COL4A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08572-1", "protein_name": "Collagen alpha-2(IV) chain", "gene_name": "COL4A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20849-1", "protein_name": "Collagen alpha-1(IX) chain", "gene_name": "COL9A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25940-1", "protein_name": "Collagen alpha-3(V) chain", "gene_name": "COL5A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01955-1", "protein_name": "Collagen alpha-3(IV) chain", "gene_name": "COL4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14118-1", "protein_name": "Dystroglycan 1", "gene_name": "DAG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07942-1", "protein_name": "Laminin subunit beta-1", "gene_name": "LAMB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24043-1", "protein_name": "Laminin subunit alpha-2", "gene_name": "LAMA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25391-1", "protein_name": "Laminin subunit alpha-1", "gene_name": "LAMA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11047-1", "protein_name": "Laminin subunit gamma-1", "gene_name": "LAMC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10600-1", "protein_name": "Transforming growth factor beta-3 proprotein", "gene_name": "TGFB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13683-1", "protein_name": "Integrin alpha-7", "gene_name": "ITGA7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16787-2", "protein_name": "Laminin subunit alpha-3", "gene_name": "LAMA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18564-1", "protein_name": "Integrin beta-6", "gene_name": "ITGB6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16363-1", "protein_name": "Laminin subunit alpha-4", "gene_name": "LAMA4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15230-1", "protein_name": "Laminin subunit alpha-5", "gene_name": "LAMA5", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95460-1", "protein_name": "Matrilin-4", "gene_name": "MATN4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08514-1", "protein_name": "Integrin alpha-IIb", "gene_name": "ITGA2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06756-1", "protein_name": "Integrin alpha-V", "gene_name": "ITGAV", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53708-1", "protein_name": "Integrin alpha-8", "gene_name": "ITGA8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P21941-1", "protein_name": "Matrilin-1", "gene_name": "MATN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05556-1", "protein_name": "Integrin beta-1", "gene_name": "ITGB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02461-1", "protein_name": "Collagen alpha-1(III) chain", "gene_name": "COL3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29400-1", "protein_name": "Collagen alpha-5(IV) chain", "gene_name": "COL4A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14055-1", "protein_name": "Collagen alpha-2(IX) chain", "gene_name": "COL9A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09486-1", "protein_name": "SPARC", "gene_name": "SPARC", "tax_name": "Human" }, { "uniprot_canonical_ac": "A8TX70-1", "protein_name": "Collagen alpha-5(VI) chain", "gene_name": "COL6A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05997-1", "protein_name": "Collagen alpha-2(V) chain", "gene_name": "COL5A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "A6NMZ7-1", "protein_name": "Collagen alpha-6(VI) chain", "gene_name": "COL6A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12111-1", "protein_name": "Collagen alpha-3(VI) chain", "gene_name": "COL6A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08123-1", "protein_name": "Collagen alpha-2(I) chain", "gene_name": "COL1A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12109-1", "protein_name": "Collagen alpha-1(VI) chain", "gene_name": "COL6A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02458-2", "protein_name": "Collagen alpha-1(II) chain", "gene_name": "COL2A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14050-1", "protein_name": "Collagen alpha-3(IX) chain", "gene_name": "COL9A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05106-1", "protein_name": "Integrin beta-3", "gene_name": "ITGB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13611-1", "protein_name": "Versican core protein", "gene_name": "VCAN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07585-1", "protein_name": "Decorin", "gene_name": "DCN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04004-1", "protein_name": "Vitronectin", "gene_name": "VTN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NZW4-1", "protein_name": "Dentin sialophosphoprotein", "gene_name": "DSPP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13797-1", "protein_name": "Integrin alpha-9", "gene_name": "ITGA9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96GW7-1", "protein_name": "Brevican core protein", "gene_name": "BCAN", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15146-1", "protein_name": "Muscle, skeletal receptor tyrosine-protein kinase", "gene_name": "MUSK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13332-1", "protein_name": "Receptor-type tyrosine-protein phosphatase S", "gene_name": "PTPRS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20702-1", "protein_name": "Integrin alpha-X", "gene_name": "ITGAX", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17301-1", "protein_name": "Integrin alpha-2", "gene_name": "ITGA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15232-1", "protein_name": "Matrilin-3", "gene_name": "MATN3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22105-3", "protein_name": "Tenascin-X", "gene_name": "TNXB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13591-2", "protein_name": "Neural cell adhesion molecule 1", "gene_name": "NCAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13316-1", "protein_name": "Dentin matrix acidic phosphoprotein 1", "gene_name": "DMP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55268-1", "protein_name": "Laminin subunit beta-2", "gene_name": "LAMB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24821-1", "protein_name": "Tenascin", "gene_name": "TNC", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14594-1", "protein_name": "Neurocan core protein", "gene_name": "NCAN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05067-1", "protein_name": "Amyloid-beta precursor protein", "gene_name": "APP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01137-1", "protein_name": "Transforming growth factor beta-1 proprotein", "gene_name": "TGFB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61812-1", "protein_name": "Transforming growth factor beta-2 proprotein", "gene_name": "TGFB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05121-1", "protein_name": "Plasminogen activator inhibitor 1", "gene_name": "SERPINE1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P98160", "url": "https://www.uniprot.org/uniprotkb/P98160" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.16493581", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 76 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Matrix metalloproteinase degradation of elastin, type IV collagen and proteoglycan. A quantitative comparison of the activities of 95 kDa and 72 kDa gelatinases, stromelysins-1 and -2 and punctuated metalloproteinase (PUMP).", "journal": "The Biochemical journal", "date": "1991", "authors": "Murphy G, Cockett MI, Ward RV, Docherty AJ", "reference": { "type": "PubMed", "id": "1649600", "url": "https://pubmed.ncbi.nlm.nih.gov/1649600" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P98160-1", "protein_name": "Basement membrane-specific heparan sulfate proteoglycan core protein", "gene_name": "HSPG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15502-3", "protein_name": "Elastin", "gene_name": "ELN", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43897-1", "protein_name": "Tolloid-like protein 1", "gene_name": "TLL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13444-1", "protein_name": "Disintegrin and metalloproteinase domain-containing protein 15", "gene_name": "ADAM15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92542-1", "protein_name": "Nicastrin", "gene_name": "NCSTN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02751-15", "protein_name": "Fibronectin", "gene_name": "FN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04632-1", "protein_name": "Calpain small subunit 1", "gene_name": "CAPNS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08246-1", "protein_name": "Neutrophil elastase", "gene_name": "ELANE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92743-1", "protein_name": "Serine protease HTRA1", "gene_name": "HTRA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBM4-1", "protein_name": "Opticin", "gene_name": "OPTC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16112-1", "protein_name": "Aggrecan core protein", "gene_name": "ACAN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P03956-1", "protein_name": "Interstitial collagenase", "gene_name": "MMP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39900-1", "protein_name": "Macrophage metalloelastase", "gene_name": "MMP12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14543-1", "protein_name": "Nidogen-1", "gene_name": "NID1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWY4-1", "protein_name": "Signal peptide, CUB and EGF-like domain-containing protein 1", "gene_name": "SCUBE1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35613-1", "protein_name": "Basigin", "gene_name": "BSG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50281-1", "protein_name": "Matrix metalloproteinase-14", "gene_name": "MMP14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TE57-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 16", "gene_name": "ADAMTS16", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNA0-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 5", "gene_name": "ADAMTS5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6MZZ7-1", "protein_name": "Calpain-13", "gene_name": "CAPN13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07711-1", "protein_name": "Procathepsin L", "gene_name": "CTSL", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75808-1", "protein_name": "Calpain-15", "gene_name": "CAPN15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16070-1", "protein_name": "CD44 antigen", "gene_name": "CD44", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08311-1", "protein_name": "Cathepsin G", "gene_name": "CTSG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10451-1", "protein_name": "Osteopontin", "gene_name": "SPP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25774-1", "protein_name": "Cathepsin S", "gene_name": "CTSS", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15484-1", "protein_name": "Calpain-5", "gene_name": "CAPN5", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60911-1", "protein_name": "Cathepsin L2", "gene_name": "CTSV", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07942-1", "protein_name": "Laminin subunit beta-1", "gene_name": "LAMB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49862-1", "protein_name": "Kallikrein-7", "gene_name": "KLK7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13753-1", "protein_name": "Laminin subunit gamma-2", "gene_name": "LAMC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11047-1", "protein_name": "Laminin subunit gamma-1", "gene_name": "LAMC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P45452-1", "protein_name": "Collagenase 3", "gene_name": "MMP13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24347-1", "protein_name": "Stromelysin-3", "gene_name": "MMP11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09238-1", "protein_name": "Stromelysin-2", "gene_name": "MMP10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51511-1", "protein_name": "Matrix metalloproteinase-15", "gene_name": "MMP15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96L46-1", "protein_name": "Calpain small subunit 2", "gene_name": "CAPNS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13751-1", "protein_name": "Laminin subunit beta-3", "gene_name": "LAMB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16787-2", "protein_name": "Laminin subunit alpha-3", "gene_name": "LAMA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15230-1", "protein_name": "Laminin subunit alpha-5", "gene_name": "LAMA5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09237-1", "protein_name": "Matrilysin", "gene_name": "MMP7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6L7-1", "protein_name": "Tolloid-like protein 2", "gene_name": "TLL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42574-1", "protein_name": "Caspase-3", "gene_name": "CASP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00747-1", "protein_name": "Plasminogen", "gene_name": "PLG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14780-1", "protein_name": "Matrix metalloproteinase-9", "gene_name": "MMP9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07585-1", "protein_name": "Decorin", "gene_name": "DCN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6W3-1", "protein_name": "Calpain-7", "gene_name": "CAPN7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13497-1", "protein_name": "Bone morphogenetic protein 1", "gene_name": "BMP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "A6NHC0-1", "protein_name": "Calpain-8", "gene_name": "CAPN8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14815-1", "protein_name": "Calpain-9", "gene_name": "CAPN9", "tax_name": "Human" }, { "uniprot_canonical_ac": "A8MX76-1", "protein_name": "Calpain-14", "gene_name": "CAPN14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12830-1", "protein_name": "Cadherin-1", "gene_name": "CDH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZSI9-1", "protein_name": "Calpain-12", "gene_name": "CAPN12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17655-1", "protein_name": "Calpain-2 catalytic subunit", "gene_name": "CAPN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6Q1-1", "protein_name": "Calpain-6", "gene_name": "CAPN6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08253-1", "protein_name": "72 kDa type IV collagenase", "gene_name": "MMP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IX30-1", "protein_name": "Signal peptide, CUB and EGF-like domain-containing protein 3", "gene_name": "SCUBE3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96GW7-1", "protein_name": "Brevican core protein", "gene_name": "BCAN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TE60-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 18", "gene_name": "ADAMTS18", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75173-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 4", "gene_name": "ADAMTS4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P2N4-3", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 9", "gene_name": "ADAMTS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHI8-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 1", "gene_name": "ADAMTS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UP79-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 8", "gene_name": "ADAMTS8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20807-1", "protein_name": "Calpain-3", "gene_name": "CAPN3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07384-1", "protein_name": "Calpain-1 catalytic subunit", "gene_name": "CAPN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HC96-1", "protein_name": "Calpain-10", "gene_name": "CAPN10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P43235-1", "protein_name": "Cathepsin K", "gene_name": "CTSK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UMQ6-1", "protein_name": "Calpain-11", "gene_name": "CAPN11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35555-1", "protein_name": "Fibrillin-1", "gene_name": "FBN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35556-1", "protein_name": "Fibrillin-2", "gene_name": "FBN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q75N90-1", "protein_name": "Fibrillin-3", "gene_name": "FBN3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20810-1", "protein_name": "Calpastatin", "gene_name": "CAST", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08254-1", "protein_name": "Stromelysin-1", "gene_name": "MMP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22894-1", "protein_name": "Neutrophil collagenase", "gene_name": "MMP8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99542-1", "protein_name": "Matrix metalloproteinase-19", "gene_name": "MMP19", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60882-1", "protein_name": "Matrix metalloproteinase-20", "gene_name": "MMP20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IU80-4", "protein_name": "Transmembrane protease serine 6", "gene_name": "TMPRSS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49768-1", "protein_name": "Presenilin-1", "gene_name": "PSEN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14672-1", "protein_name": "Disintegrin and metalloproteinase domain-containing protein 10", "gene_name": "ADAM10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01023-1", "protein_name": "Alpha-2-macroglobulin", "gene_name": "A2M", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78325-1", "protein_name": "Disintegrin and metalloproteinase domain-containing protein 8", "gene_name": "ADAM8", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P98160", "url": "https://www.uniprot.org/uniprotkb/P98160" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.1649600", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 81 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Identification of functional domains in sarcoglycans essential for their interaction and plasma membrane targeting.", "journal": "Experimental cell research", "date": "2006", "authors": "Chen J, Shi W, Zhang Y, Sokol R, Cai H, Lun M, Moore BF, Farber MJ, Stepanchick JS, Bonnemann CG, Chan YM", "reference": { "type": "PubMed", "id": "16524571", "url": "https://pubmed.ncbi.nlm.nih.gov/16524571" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P98160-1", "protein_name": "Basement membrane-specific heparan sulfate proteoglycan core protein", "gene_name": "HSPG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43556-1", "protein_name": "Epsilon-sarcoglycan", "gene_name": "SGCE", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00468-1", "protein_name": "Agrin", "gene_name": "AGRN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16585-1", "protein_name": "Beta-sarcoglycan", "gene_name": "SGCB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14714-1", "protein_name": "Sarcospan", "gene_name": "SSPN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16586-1", "protein_name": "Alpha-sarcoglycan", "gene_name": "SGCA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96LD1-1", "protein_name": "Zeta-sarcoglycan", "gene_name": "SGCZ", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92629-1", "protein_name": "Delta-sarcoglycan", "gene_name": "SGCD", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14118-1", "protein_name": "Dystroglycan 1", "gene_name": "DAG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07942-1", "protein_name": "Laminin subunit beta-1", "gene_name": "LAMB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24043-1", "protein_name": "Laminin subunit alpha-2", "gene_name": "LAMA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25391-1", "protein_name": "Laminin subunit alpha-1", "gene_name": "LAMA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6N6-1", "protein_name": "Laminin subunit gamma-3", "gene_name": "LAMC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13753-1", "protein_name": "Laminin subunit gamma-2", "gene_name": "LAMC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11047-1", "protein_name": "Laminin subunit gamma-1", "gene_name": "LAMC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46939-1", "protein_name": "Utrophin", "gene_name": "UTRN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NY99-1", "protein_name": "Gamma-2-syntrophin", "gene_name": "SNTG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13751-1", "protein_name": "Laminin subunit beta-3", "gene_name": "LAMB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16787-2", "protein_name": "Laminin subunit alpha-3", "gene_name": "LAMA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16363-1", "protein_name": "Laminin subunit alpha-4", "gene_name": "LAMA4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15230-1", "protein_name": "Laminin subunit alpha-5", "gene_name": "LAMA5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4J8-1", "protein_name": "Dystrobrevin alpha", "gene_name": "DTNA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63267-1", "protein_name": "Actin, gamma-enteric smooth muscle", "gene_name": "ACTG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68032-1", "protein_name": "Actin, alpha cardiac muscle 1", "gene_name": "ACTC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13884-1", "protein_name": "Beta-1-syntrophin", "gene_name": "SNTB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13424-1", "protein_name": "Alpha-1-syntrophin", "gene_name": "SNTA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13326-1", "protein_name": "Gamma-sarcoglycan", "gene_name": "SGCG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63261-1", "protein_name": "Actin, cytoplasmic 2", "gene_name": "ACTG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62736-1", "protein_name": "Actin, aortic smooth muscle", "gene_name": "ACTA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11532-1", "protein_name": "Dystrophin", "gene_name": "DMD", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13425-1", "protein_name": "Beta-2-syntrophin", "gene_name": "SNTB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13474-1", "protein_name": "Dystrophin-related protein 2", "gene_name": "DRP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55268-1", "protein_name": "Laminin subunit beta-2", "gene_name": "LAMB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60941-1", "protein_name": "Dystrobrevin beta", "gene_name": "DTNB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68133-1", "protein_name": "Actin, alpha skeletal muscle", "gene_name": "ACTA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60709-1", "protein_name": "Actin, cytoplasmic 1", "gene_name": "ACTB", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P98160", "url": "https://www.uniprot.org/uniprotkb/P98160" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.16524571", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 36 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Multiple functions of the integrin alpha6beta4 in epidermal homeostasis and tumorigenesis.", "journal": "Molecular and cellular biology", "date": "2006", "authors": "Wilhelmsen K, Litjens SH, Sonnenberg A", "reference": { "type": "PubMed", "id": "16581764", "url": "https://pubmed.ncbi.nlm.nih.gov/16581764" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P98160-1", "protein_name": "Basement membrane-specific heparan sulfate proteoglycan core protein", "gene_name": "HSPG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16144-1", "protein_name": "Integrin beta-4", "gene_name": "ITGB4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53420-1", "protein_name": "Collagen alpha-4(IV) chain", "gene_name": "COL4A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14543-1", "protein_name": "Nidogen-1", "gene_name": "NID1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14112-1", "protein_name": "Nidogen-2", "gene_name": "NID2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14031-1", "protein_name": "Collagen alpha-6(IV) chain", "gene_name": "COL4A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02462-1", "protein_name": "Collagen alpha-1(IV) chain", "gene_name": "COL4A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08572-1", "protein_name": "Collagen alpha-2(IV) chain", "gene_name": "COL4A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01955-1", "protein_name": "Collagen alpha-3(IV) chain", "gene_name": "COL4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07942-1", "protein_name": "Laminin subunit beta-1", "gene_name": "LAMB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24043-1", "protein_name": "Laminin subunit alpha-2", "gene_name": "LAMA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25391-1", "protein_name": "Laminin subunit alpha-1", "gene_name": "LAMA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6N6-1", "protein_name": "Laminin subunit gamma-3", "gene_name": "LAMC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13753-1", "protein_name": "Laminin subunit gamma-2", "gene_name": "LAMC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11047-1", "protein_name": "Laminin subunit gamma-1", "gene_name": "LAMC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13683-1", "protein_name": "Integrin alpha-7", "gene_name": "ITGA7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13751-1", "protein_name": "Laminin subunit beta-3", "gene_name": "LAMB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16787-2", "protein_name": "Laminin subunit alpha-3", "gene_name": "LAMA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16363-1", "protein_name": "Laminin subunit alpha-4", "gene_name": "LAMA4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15230-1", "protein_name": "Laminin subunit alpha-5", "gene_name": "LAMA5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26006-2", "protein_name": "Integrin alpha-3", "gene_name": "ITGA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06756-1", "protein_name": "Integrin alpha-V", "gene_name": "ITGAV", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05556-1", "protein_name": "Integrin beta-1", "gene_name": "ITGB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29400-1", "protein_name": "Collagen alpha-5(IV) chain", "gene_name": "COL4A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02388-1", "protein_name": "Collagen alpha-1(VII) chain", "gene_name": "COL7A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23229-1", "protein_name": "Integrin alpha-6", "gene_name": "ITGA6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17301-1", "protein_name": "Integrin alpha-2", "gene_name": "ITGA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P56199-1", "protein_name": "Integrin alpha-1", "gene_name": "ITGA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55268-1", "protein_name": "Laminin subunit beta-2", "gene_name": "LAMB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39060-3", "protein_name": "Collagen alpha-1(XVIII) chain", "gene_name": "COL18A1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P98160", "url": "https://www.uniprot.org/uniprotkb/P98160" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.16581764", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 30 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Antithrombin-S195A factor Xa-heparin structure reveals the allosteric mechanism of antithrombin activation.", "journal": "The EMBO journal", "date": "2006-05-03", "authors": "Johnson Daniel J D, Li Wei, Adams Ty E, Huntington James A", "reference": { "type": "PubMed", "id": "16619025", "url": "https://pubmed.ncbi.nlm.nih.gov/16619025" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P98160-1", "protein_name": "Basement membrane-specific heparan sulfate proteoglycan core protein", "gene_name": "HSPG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75056-1", "protein_name": "Syndecan-3", "gene_name": "SDC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07204-1", "protein_name": "Thrombomodulin", "gene_name": "THBD", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00734-1", "protein_name": "Prothrombin", "gene_name": "F2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q4KMQ2-1", "protein_name": "Anoctamin-6", "gene_name": "ANO6", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00468-1", "protein_name": "Agrin", "gene_name": "AGRN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q75V66-1", "protein_name": "Anoctamin-5", "gene_name": "ANO5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01008-1", "protein_name": "Antithrombin-III", "gene_name": "SERPINC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07093-1", "protein_name": "Glia-derived nexin", "gene_name": "SERPINE2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNN8-1", "protein_name": "Endothelial protein C receptor", "gene_name": "PROCR", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51654-1", "protein_name": "Glypican-3", "gene_name": "GPC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07359-1", "protein_name": "Platelet glycoprotein Ib alpha chain", "gene_name": "GP1BA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13224-1", "protein_name": "Platelet glycoprotein Ib beta chain", "gene_name": "GP1BB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24158-1", "protein_name": "Myeloblastin", "gene_name": "PRTN3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25116-1", "protein_name": "Proteinase-activated receptor 1", "gene_name": "F2R", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18827-1", "protein_name": "Syndecan-1", "gene_name": "SDC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04275-1", "protein_name": "von Willebrand factor", "gene_name": "VWF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17405-1", "protein_name": "Sphingomyelin phosphodiesterase", "gene_name": "SMPD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q76LX8-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 13", "gene_name": "ADAMTS13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N6Q3-1", "protein_name": "CD177 antigen", "gene_name": "CD177", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31431-1", "protein_name": "Syndecan-4", "gene_name": "SDC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y625-1", "protein_name": "Glypican-6", "gene_name": "GPC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05154-1", "protein_name": "Plasma serine protease inhibitor", "gene_name": "SERPINA5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05155-1", "protein_name": "Plasma protease C1 inhibitor", "gene_name": "SERPING1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N158-1", "protein_name": "Glypican-2", "gene_name": "GPC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P03951-1", "protein_name": "Coagulation factor XI", "gene_name": "F11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00451-1", "protein_name": "Coagulation factor VIII", "gene_name": "F8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00740-1", "protein_name": "Coagulation factor IX", "gene_name": "F9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02776-1", "protein_name": "Platelet factor 4", "gene_name": "PF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04070-1", "protein_name": "Vitamin K-dependent protein C", "gene_name": "PROC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P34741-1", "protein_name": "Syndecan-2", "gene_name": "SDC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12259-1", "protein_name": "Coagulation factor V", "gene_name": "F5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78333-1", "protein_name": "Glypican-5", "gene_name": "GPC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35052-1", "protein_name": "Glypican-1", "gene_name": "GPC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UK55-1", "protein_name": "Protein Z-dependent protease inhibitor", "gene_name": "SERPINA10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10720-1", "protein_name": "Platelet factor 4 variant", "gene_name": "PF4V1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07225-1", "protein_name": "Vitamin K-dependent protein S", "gene_name": "PROS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05546-1", "protein_name": "Heparin cofactor 2", "gene_name": "SERPIND1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22891-1", "protein_name": "Vitamin K-dependent protein Z", "gene_name": "PROZ", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00742-1", "protein_name": "Coagulation factor X", "gene_name": "F10", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75487-1", "protein_name": "Glypican-4", "gene_name": "GPC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14770-1", "protein_name": "Platelet glycoprotein IX", "gene_name": "GP9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40197-1", "protein_name": "Platelet glycoprotein V", "gene_name": "GP5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08709-1", "protein_name": "Coagulation factor VII", "gene_name": "F7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13726-1", "protein_name": "Tissue factor", "gene_name": "F3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05067-1", "protein_name": "Amyloid-beta precursor protein", "gene_name": "APP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05121-1", "protein_name": "Plasminogen activator inhibitor 1", "gene_name": "SERPINE1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P98160", "url": "https://www.uniprot.org/uniprotkb/P98160" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.16619025", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 47 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Alpha-V-dependent outside-in signaling is required for the regulation of CD44 surface expression, MMP-2 secretion, and cell migration by osteopontin in human melanoma cells.", "journal": "Experimental cell research", "date": "2006", "authors": "Samanna V, Wei H, Ego-Osuala D, Chellaiah MA", "reference": { "type": "PubMed", "id": "16631740", "url": "https://pubmed.ncbi.nlm.nih.gov/16631740" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P98160-1", "protein_name": "Basement membrane-specific heparan sulfate proteoglycan core protein", "gene_name": "HSPG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15502-3", "protein_name": "Elastin", "gene_name": "ELN", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43897-1", "protein_name": "Tolloid-like protein 1", "gene_name": "TLL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13444-1", "protein_name": "Disintegrin and metalloproteinase domain-containing protein 15", "gene_name": "ADAM15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92542-1", "protein_name": "Nicastrin", "gene_name": "NCSTN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02751-15", "protein_name": "Fibronectin", "gene_name": "FN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04632-1", "protein_name": "Calpain small subunit 1", "gene_name": "CAPNS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08246-1", "protein_name": "Neutrophil elastase", "gene_name": "ELANE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92743-1", "protein_name": "Serine protease HTRA1", "gene_name": "HTRA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBM4-1", "protein_name": "Opticin", "gene_name": "OPTC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16112-1", "protein_name": "Aggrecan core protein", "gene_name": "ACAN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P03956-1", "protein_name": "Interstitial collagenase", "gene_name": "MMP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39900-1", "protein_name": "Macrophage metalloelastase", "gene_name": "MMP12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14543-1", "protein_name": "Nidogen-1", "gene_name": "NID1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWY4-1", "protein_name": "Signal peptide, CUB and EGF-like domain-containing protein 1", "gene_name": "SCUBE1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35613-1", "protein_name": "Basigin", "gene_name": "BSG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50281-1", "protein_name": "Matrix metalloproteinase-14", "gene_name": "MMP14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TE57-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 16", "gene_name": "ADAMTS16", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNA0-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 5", "gene_name": "ADAMTS5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6MZZ7-1", "protein_name": "Calpain-13", "gene_name": "CAPN13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07711-1", "protein_name": "Procathepsin L", "gene_name": "CTSL", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75808-1", "protein_name": "Calpain-15", "gene_name": "CAPN15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16070-1", "protein_name": "CD44 antigen", "gene_name": "CD44", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08311-1", "protein_name": "Cathepsin G", "gene_name": "CTSG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10451-1", "protein_name": "Osteopontin", "gene_name": "SPP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25774-1", "protein_name": "Cathepsin S", "gene_name": "CTSS", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15484-1", "protein_name": "Calpain-5", "gene_name": "CAPN5", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60911-1", "protein_name": "Cathepsin L2", "gene_name": "CTSV", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07942-1", "protein_name": "Laminin subunit beta-1", "gene_name": "LAMB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49862-1", "protein_name": "Kallikrein-7", "gene_name": "KLK7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13753-1", "protein_name": "Laminin subunit gamma-2", "gene_name": "LAMC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11047-1", "protein_name": "Laminin subunit gamma-1", "gene_name": "LAMC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P45452-1", "protein_name": "Collagenase 3", "gene_name": "MMP13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24347-1", "protein_name": "Stromelysin-3", "gene_name": "MMP11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09238-1", "protein_name": "Stromelysin-2", "gene_name": "MMP10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51511-1", "protein_name": "Matrix metalloproteinase-15", "gene_name": "MMP15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96L46-1", "protein_name": "Calpain small subunit 2", "gene_name": "CAPNS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13751-1", "protein_name": "Laminin subunit beta-3", "gene_name": "LAMB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16787-2", "protein_name": "Laminin subunit alpha-3", "gene_name": "LAMA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15230-1", "protein_name": "Laminin subunit alpha-5", "gene_name": "LAMA5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09237-1", "protein_name": "Matrilysin", "gene_name": "MMP7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6L7-1", "protein_name": "Tolloid-like protein 2", "gene_name": "TLL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42574-1", "protein_name": "Caspase-3", "gene_name": "CASP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00747-1", "protein_name": "Plasminogen", "gene_name": "PLG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14780-1", "protein_name": "Matrix metalloproteinase-9", "gene_name": "MMP9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07585-1", "protein_name": "Decorin", "gene_name": "DCN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6W3-1", "protein_name": "Calpain-7", "gene_name": "CAPN7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13497-1", "protein_name": "Bone morphogenetic protein 1", "gene_name": "BMP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "A6NHC0-1", "protein_name": "Calpain-8", "gene_name": "CAPN8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14815-1", "protein_name": "Calpain-9", "gene_name": "CAPN9", "tax_name": "Human" }, { "uniprot_canonical_ac": "A8MX76-1", "protein_name": "Calpain-14", "gene_name": "CAPN14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12830-1", "protein_name": "Cadherin-1", "gene_name": "CDH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZSI9-1", "protein_name": "Calpain-12", "gene_name": "CAPN12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17655-1", "protein_name": "Calpain-2 catalytic subunit", "gene_name": "CAPN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6Q1-1", "protein_name": "Calpain-6", "gene_name": "CAPN6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08253-1", "protein_name": "72 kDa type IV collagenase", "gene_name": "MMP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IX30-1", "protein_name": "Signal peptide, CUB and EGF-like domain-containing protein 3", "gene_name": "SCUBE3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96GW7-1", "protein_name": "Brevican core protein", "gene_name": "BCAN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TE60-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 18", "gene_name": "ADAMTS18", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75173-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 4", "gene_name": "ADAMTS4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P2N4-3", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 9", "gene_name": "ADAMTS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHI8-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 1", "gene_name": "ADAMTS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UP79-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 8", "gene_name": "ADAMTS8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20807-1", "protein_name": "Calpain-3", "gene_name": "CAPN3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07384-1", "protein_name": "Calpain-1 catalytic subunit", "gene_name": "CAPN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HC96-1", "protein_name": "Calpain-10", "gene_name": "CAPN10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P43235-1", "protein_name": "Cathepsin K", "gene_name": "CTSK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UMQ6-1", "protein_name": "Calpain-11", "gene_name": "CAPN11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35555-1", "protein_name": "Fibrillin-1", "gene_name": "FBN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35556-1", "protein_name": "Fibrillin-2", "gene_name": "FBN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q75N90-1", "protein_name": "Fibrillin-3", "gene_name": "FBN3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20810-1", "protein_name": "Calpastatin", "gene_name": "CAST", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08254-1", "protein_name": "Stromelysin-1", "gene_name": "MMP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22894-1", "protein_name": "Neutrophil collagenase", "gene_name": "MMP8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99542-1", "protein_name": "Matrix metalloproteinase-19", "gene_name": "MMP19", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60882-1", "protein_name": "Matrix metalloproteinase-20", "gene_name": "MMP20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IU80-4", "protein_name": "Transmembrane protease serine 6", "gene_name": "TMPRSS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49768-1", "protein_name": "Presenilin-1", "gene_name": "PSEN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14672-1", "protein_name": "Disintegrin and metalloproteinase domain-containing protein 10", "gene_name": "ADAM10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01023-1", "protein_name": "Alpha-2-macroglobulin", "gene_name": "A2M", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78325-1", "protein_name": "Disintegrin and metalloproteinase domain-containing protein 8", "gene_name": "ADAM8", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P98160", "url": "https://www.uniprot.org/uniprotkb/P98160" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.16631740", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 81 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Integrin alpha3beta1, a novel receptor for alpha3(IV) noncollagenous domain and a trans-dominant Inhibitor for integrin alphavbeta3.", "journal": "The Journal of biological chemistry", "date": "2006", "authors": "Borza CM, Pozzi A, Borza DB, Pedchenko V, Hellmark T, Hudson BG, Zent R", "reference": { "type": "PubMed", "id": "16731529", "url": "https://pubmed.ncbi.nlm.nih.gov/16731529" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P98160-1", "protein_name": "Basement membrane-specific heparan sulfate proteoglycan core protein", "gene_name": "HSPG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51884-1", "protein_name": "Lumican", "gene_name": "LUM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02452-1", "protein_name": "Collagen alpha-1(I) chain", "gene_name": "COL1A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18084-1", "protein_name": "Integrin beta-5", "gene_name": "ITGB5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02671-1", "protein_name": "Fibrinogen alpha chain", "gene_name": "FGA", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00468-1", "protein_name": "Agrin", "gene_name": "AGRN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02751-15", "protein_name": "Fibronectin", "gene_name": "FN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08722-1", "protein_name": "Leukocyte surface antigen CD47", "gene_name": "CD47", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53420-1", "protein_name": "Collagen alpha-4(IV) chain", "gene_name": "COL4A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02679-1", "protein_name": "Fibrinogen gamma chain", "gene_name": "FGG", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86Y22-1", "protein_name": "Collagen alpha-1(XXIII) chain", "gene_name": "COL23A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20701-1", "protein_name": "Integrin alpha-L", "gene_name": "ITGAL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05362-1", "protein_name": "Intercellular adhesion molecule 1", "gene_name": "ICAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y624-1", "protein_name": "Junctional adhesion molecule A", "gene_name": "F11R", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35613-1", "protein_name": "Basigin", "gene_name": "BSG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P21815-1", "protein_name": "Integrin-binding sialoprotein", "gene_name": "IBSP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49747-1", "protein_name": "Cartilage oligomeric matrix protein", "gene_name": "COMP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04275-1", "protein_name": "von Willebrand factor", "gene_name": "VWF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07996-1", "protein_name": "Thrombospondin-1", "gene_name": "THBS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16070-1", "protein_name": "CD44 antigen", "gene_name": "CD44", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10451-1", "protein_name": "Osteopontin", "gene_name": "SPP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12110-1", "protein_name": "Collagen alpha-2(VI) chain", "gene_name": "COL6A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14031-1", "protein_name": "Collagen alpha-6(IV) chain", "gene_name": "COL4A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20908-1", "protein_name": "Collagen alpha-1(V) chain", "gene_name": "COL5A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02462-1", "protein_name": "Collagen alpha-1(IV) chain", "gene_name": "COL4A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27658-1", "protein_name": "Collagen alpha-1(VIII) chain", "gene_name": "COL8A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08572-1", "protein_name": "Collagen alpha-2(IV) chain", "gene_name": "COL4A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25067-1", "protein_name": "Collagen alpha-2(VIII) chain", "gene_name": "COL8A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20849-1", "protein_name": "Collagen alpha-1(IX) chain", "gene_name": "COL9A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25940-1", "protein_name": "Collagen alpha-3(V) chain", "gene_name": "COL5A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01955-1", "protein_name": "Collagen alpha-3(IV) chain", "gene_name": "COL4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16284-1", "protein_name": "Platelet endothelial cell adhesion molecule", "gene_name": "PECAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35968-1", "protein_name": "Vascular endothelial growth factor receptor 2", "gene_name": "KDR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13683-1", "protein_name": "Integrin alpha-7", "gene_name": "ITGA7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18564-1", "protein_name": "Integrin beta-6", "gene_name": "ITGB6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11215-1", "protein_name": "Integrin alpha-M", "gene_name": "ITGAM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26006-2", "protein_name": "Integrin alpha-3", "gene_name": "ITGA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08514-1", "protein_name": "Integrin alpha-IIb", "gene_name": "ITGA2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38570-1", "protein_name": "Integrin alpha-E", "gene_name": "ITGAE", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75578-1", "protein_name": "Integrin alpha-10", "gene_name": "ITGA10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06756-1", "protein_name": "Integrin alpha-V", "gene_name": "ITGAV", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53708-1", "protein_name": "Integrin alpha-8", "gene_name": "ITGA8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13349-1", "protein_name": "Integrin alpha-D", "gene_name": "ITGAD", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKX5-1", "protein_name": "Integrin alpha-11", "gene_name": "ITGA11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08648-1", "protein_name": "Integrin alpha-5", "gene_name": "ITGA5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13612-1", "protein_name": "Integrin alpha-4", "gene_name": "ITGA4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05556-1", "protein_name": "Integrin beta-1", "gene_name": "ITGB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02461-1", "protein_name": "Collagen alpha-1(III) chain", "gene_name": "COL3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07092-1", "protein_name": "Collagen alpha-1(XVI) chain", "gene_name": "COL16A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29400-1", "protein_name": "Collagen alpha-5(IV) chain", "gene_name": "COL4A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14055-1", "protein_name": "Collagen alpha-2(IX) chain", "gene_name": "COL9A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "A8TX70-1", "protein_name": "Collagen alpha-5(VI) chain", "gene_name": "COL6A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05997-1", "protein_name": "Collagen alpha-2(V) chain", "gene_name": "COL5A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "A6NMZ7-1", "protein_name": "Collagen alpha-6(VI) chain", "gene_name": "COL6A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12111-1", "protein_name": "Collagen alpha-3(VI) chain", "gene_name": "COL6A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5TAT6-1", "protein_name": "Collagen alpha-1(XIII) chain", "gene_name": "COL13A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08123-1", "protein_name": "Collagen alpha-2(I) chain", "gene_name": "COL1A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12109-1", "protein_name": "Collagen alpha-1(VI) chain", "gene_name": "COL6A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02458-2", "protein_name": "Collagen alpha-1(II) chain", "gene_name": "COL2A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02388-1", "protein_name": "Collagen alpha-1(VII) chain", "gene_name": "COL7A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14050-1", "protein_name": "Collagen alpha-3(IX) chain", "gene_name": "COL9A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02675-1", "protein_name": "Fibrinogen beta chain", "gene_name": "FGB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26010-1", "protein_name": "Integrin beta-7", "gene_name": "ITGB7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05106-1", "protein_name": "Integrin beta-3", "gene_name": "ITGB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q03692-1", "protein_name": "Collagen alpha-1(X) chain", "gene_name": "COL10A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12830-1", "protein_name": "Cadherin-1", "gene_name": "CDH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04004-1", "protein_name": "Vitronectin", "gene_name": "VTN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23229-1", "protein_name": "Integrin alpha-6", "gene_name": "ITGA6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14773-1", "protein_name": "Intercellular adhesion molecule 4", "gene_name": "ICAM4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13797-1", "protein_name": "Integrin alpha-9", "gene_name": "ITGA9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32942-1", "protein_name": "Intercellular adhesion molecule 3", "gene_name": "ICAM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UMF0-1", "protein_name": "Intercellular adhesion molecule 5", "gene_name": "ICAM5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20702-1", "protein_name": "Integrin alpha-X", "gene_name": "ITGAX", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BX67-1", "protein_name": "Junctional adhesion molecule C", "gene_name": "JAM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17301-1", "protein_name": "Integrin alpha-2", "gene_name": "ITGA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57087-1", "protein_name": "Junctional adhesion molecule B", "gene_name": "JAM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26012-1", "protein_name": "Integrin beta-8", "gene_name": "ITGB8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P56199-1", "protein_name": "Integrin alpha-1", "gene_name": "ITGA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19320-1", "protein_name": "Vascular cell adhesion protein 1", "gene_name": "VCAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35555-1", "protein_name": "Fibrillin-1", "gene_name": "FBN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13598-1", "protein_name": "Intercellular adhesion molecule 2", "gene_name": "ICAM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24821-1", "protein_name": "Tenascin", "gene_name": "TNC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39060-3", "protein_name": "Collagen alpha-1(XVIII) chain", "gene_name": "COL18A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05107-1", "protein_name": "Integrin beta-2", "gene_name": "ITGB2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P98160", "url": "https://www.uniprot.org/uniprotkb/P98160" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.16731529", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 84 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Collagen XVI harbors an integrin alpha1 beta1 recognition site in its C-terminal domains.", "journal": "The Journal of biological chemistry", "date": "2006", "authors": "Eble JA, Kassner A, Niland S, Morgelin M, Grifka J, Grassel S", "reference": { "type": "PubMed", "id": "16754661", "url": "https://pubmed.ncbi.nlm.nih.gov/16754661" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P98160-1", "protein_name": "Basement membrane-specific heparan sulfate proteoglycan core protein", "gene_name": "HSPG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51884-1", "protein_name": "Lumican", "gene_name": "LUM", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8BLX7-1", "protein_name": "Collagen alpha-1(XVI) chain", "gene_name": "Col16a1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P02452-1", "protein_name": "Collagen alpha-1(I) chain", "gene_name": "COL1A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18084-1", "protein_name": "Integrin beta-5", "gene_name": "ITGB5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02671-1", "protein_name": "Fibrinogen alpha chain", "gene_name": "FGA", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00468-1", "protein_name": "Agrin", "gene_name": "AGRN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02751-15", "protein_name": "Fibronectin", "gene_name": "FN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08722-1", "protein_name": "Leukocyte surface antigen CD47", "gene_name": "CD47", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53420-1", "protein_name": "Collagen alpha-4(IV) chain", "gene_name": "COL4A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02679-1", "protein_name": "Fibrinogen gamma chain", "gene_name": "FGG", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86Y22-1", "protein_name": "Collagen alpha-1(XXIII) chain", "gene_name": "COL23A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20701-1", "protein_name": "Integrin alpha-L", "gene_name": "ITGAL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05362-1", "protein_name": "Intercellular adhesion molecule 1", "gene_name": "ICAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y624-1", "protein_name": "Junctional adhesion molecule A", "gene_name": "F11R", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35613-1", "protein_name": "Basigin", "gene_name": "BSG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P21815-1", "protein_name": "Integrin-binding sialoprotein", "gene_name": "IBSP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49747-1", "protein_name": "Cartilage oligomeric matrix protein", "gene_name": "COMP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04275-1", "protein_name": "von Willebrand factor", "gene_name": "VWF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07996-1", "protein_name": "Thrombospondin-1", "gene_name": "THBS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16070-1", "protein_name": "CD44 antigen", "gene_name": "CD44", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10451-1", "protein_name": "Osteopontin", "gene_name": "SPP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12110-1", "protein_name": "Collagen alpha-2(VI) chain", "gene_name": "COL6A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14031-1", "protein_name": "Collagen alpha-6(IV) chain", "gene_name": "COL4A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20908-1", "protein_name": "Collagen alpha-1(V) chain", "gene_name": "COL5A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02462-1", "protein_name": "Collagen alpha-1(IV) chain", "gene_name": "COL4A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27658-1", "protein_name": "Collagen alpha-1(VIII) chain", "gene_name": "COL8A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08572-1", "protein_name": "Collagen alpha-2(IV) chain", "gene_name": "COL4A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25067-1", "protein_name": "Collagen alpha-2(VIII) chain", "gene_name": "COL8A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20849-1", "protein_name": "Collagen alpha-1(IX) chain", "gene_name": "COL9A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25940-1", "protein_name": "Collagen alpha-3(V) chain", "gene_name": "COL5A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01955-1", "protein_name": "Collagen alpha-3(IV) chain", "gene_name": "COL4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16284-1", "protein_name": "Platelet endothelial cell adhesion molecule", "gene_name": "PECAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35968-1", "protein_name": "Vascular endothelial growth factor receptor 2", "gene_name": "KDR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13683-1", "protein_name": "Integrin alpha-7", "gene_name": "ITGA7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18564-1", "protein_name": "Integrin beta-6", "gene_name": "ITGB6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11215-1", "protein_name": "Integrin alpha-M", "gene_name": "ITGAM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26006-2", "protein_name": "Integrin alpha-3", "gene_name": "ITGA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08514-1", "protein_name": "Integrin alpha-IIb", "gene_name": "ITGA2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38570-1", "protein_name": "Integrin alpha-E", "gene_name": "ITGAE", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75578-1", "protein_name": "Integrin alpha-10", "gene_name": "ITGA10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06756-1", "protein_name": "Integrin alpha-V", "gene_name": "ITGAV", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53708-1", "protein_name": "Integrin alpha-8", "gene_name": "ITGA8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13349-1", "protein_name": "Integrin alpha-D", "gene_name": "ITGAD", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKX5-1", "protein_name": "Integrin alpha-11", "gene_name": "ITGA11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08648-1", "protein_name": "Integrin alpha-5", "gene_name": "ITGA5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13612-1", "protein_name": "Integrin alpha-4", "gene_name": "ITGA4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05556-1", "protein_name": "Integrin beta-1", "gene_name": "ITGB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02461-1", "protein_name": "Collagen alpha-1(III) chain", "gene_name": "COL3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07092-1", "protein_name": "Collagen alpha-1(XVI) chain", "gene_name": "COL16A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29400-1", "protein_name": "Collagen alpha-5(IV) chain", "gene_name": "COL4A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14055-1", "protein_name": "Collagen alpha-2(IX) chain", "gene_name": "COL9A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "A8TX70-1", "protein_name": "Collagen alpha-5(VI) chain", "gene_name": "COL6A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05997-1", "protein_name": "Collagen alpha-2(V) chain", "gene_name": "COL5A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "A6NMZ7-1", "protein_name": "Collagen alpha-6(VI) chain", "gene_name": "COL6A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12111-1", "protein_name": "Collagen alpha-3(VI) chain", "gene_name": "COL6A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5TAT6-1", "protein_name": "Collagen alpha-1(XIII) chain", "gene_name": "COL13A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08123-1", "protein_name": "Collagen alpha-2(I) chain", "gene_name": "COL1A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12109-1", "protein_name": "Collagen alpha-1(VI) chain", "gene_name": "COL6A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02458-2", "protein_name": "Collagen alpha-1(II) chain", "gene_name": "COL2A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02388-1", "protein_name": "Collagen alpha-1(VII) chain", "gene_name": "COL7A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14050-1", "protein_name": "Collagen alpha-3(IX) chain", "gene_name": "COL9A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02675-1", "protein_name": "Fibrinogen beta chain", "gene_name": "FGB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26010-1", "protein_name": "Integrin beta-7", "gene_name": "ITGB7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05106-1", "protein_name": "Integrin beta-3", "gene_name": "ITGB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q03692-1", "protein_name": "Collagen alpha-1(X) chain", "gene_name": "COL10A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12830-1", "protein_name": "Cadherin-1", "gene_name": "CDH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04004-1", "protein_name": "Vitronectin", "gene_name": "VTN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23229-1", "protein_name": "Integrin alpha-6", "gene_name": "ITGA6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14773-1", "protein_name": "Intercellular adhesion molecule 4", "gene_name": "ICAM4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13797-1", "protein_name": "Integrin alpha-9", "gene_name": "ITGA9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32942-1", "protein_name": "Intercellular adhesion molecule 3", "gene_name": "ICAM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UMF0-1", "protein_name": "Intercellular adhesion molecule 5", "gene_name": "ICAM5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20702-1", "protein_name": "Integrin alpha-X", "gene_name": "ITGAX", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BX67-1", "protein_name": "Junctional adhesion molecule C", "gene_name": "JAM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17301-1", "protein_name": "Integrin alpha-2", "gene_name": "ITGA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57087-1", "protein_name": "Junctional adhesion molecule B", "gene_name": "JAM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26012-1", "protein_name": "Integrin beta-8", "gene_name": "ITGB8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P56199-1", "protein_name": "Integrin alpha-1", "gene_name": "ITGA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19320-1", "protein_name": "Vascular cell adhesion protein 1", "gene_name": "VCAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35555-1", "protein_name": "Fibrillin-1", "gene_name": "FBN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13598-1", "protein_name": "Intercellular adhesion molecule 2", "gene_name": "ICAM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24821-1", "protein_name": "Tenascin", "gene_name": "TNC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39060-3", "protein_name": "Collagen alpha-1(XVIII) chain", "gene_name": "COL18A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05107-1", "protein_name": "Integrin beta-2", "gene_name": "ITGB2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P98160", "url": "https://www.uniprot.org/uniprotkb/P98160" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.16754661", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 85 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Heparan sulfate proteoglycan of human colon: partial molecular cloning, cellular expression, and mapping of the gene (HSPG2) to the short arm of human chromosome 1.", "journal": "Genomics", "date": "1991", "authors": "Dodge GR, Kovalszky I, Chu ML, Hassell JR, McBride OW, Yi HF, Iozzo RV", "reference": { "type": "PubMed", "id": "1679749", "url": "https://pubmed.ncbi.nlm.nih.gov/1679749" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P98160-1", "protein_name": "Basement membrane-specific heparan sulfate proteoglycan core protein", "gene_name": "HSPG2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P98160", "url": "https://www.uniprot.org/uniprotkb/P98160" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.1679749", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Structure, binding interface and hydrophobic transitions of Ca2+-loaded calbindin-D(28K).", "journal": "Nature structural & molecular biology", "date": "2006", "authors": "Kojetin DJ, Venters RA, Kordys DR, Thompson RJ, Kumar R, Cavanagh J", "reference": { "type": "PubMed", "id": "16799559", "url": "https://pubmed.ncbi.nlm.nih.gov/16799559" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P98160-1", "protein_name": "Basement membrane-specific heparan sulfate proteoglycan core protein", "gene_name": "HSPG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61626-1", "protein_name": "Lysozyme C", "gene_name": "LYZ", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0DJI8-1", "protein_name": "Serum amyloid A-1 protein", "gene_name": "SAA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04279-1", "protein_name": "Semenogelin-1", "gene_name": "SEMG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95858-1", "protein_name": "Tetraspanin-15", "gene_name": "TSPAN15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02788-1", "protein_name": "Lactotransferrin", "gene_name": "LTF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02671-1", "protein_name": "Fibrinogen alpha chain", "gene_name": "FGA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92542-1", "protein_name": "Nicastrin", "gene_name": "NCSTN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BI3-1", "protein_name": "Gamma-secretase subunit APH-1A", "gene_name": "APH1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14933-1", "protein_name": "Ubiquitin/ISG15-conjugating enzyme E2 L6", "gene_name": "UBE2L6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07171-1", "protein_name": "Calbindin", "gene_name": "Calb1", "tax_name": "Rat" }, { "uniprot_canonical_ac": "P09958-1", "protein_name": "Furin", "gene_name": "FURIN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0C0S5-1", "protein_name": "Histone H2A.Z", "gene_name": "H2AZ1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NZ42-1", "protein_name": "Gamma-secretase subunit PEN-2", "gene_name": "PSENEN", "tax_name": "Human" }, { "uniprot_canonical_ac": "A1E959-1", "protein_name": "Odontogenic ameloblast-associated protein", "gene_name": "ODAM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10997-1", "protein_name": "Islet amyloid polypeptide", "gene_name": "IAPP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02743-1", "protein_name": "Serum amyloid P-component", "gene_name": "APCS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01236-1", "protein_name": "Prolactin", "gene_name": "PRL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6H5-1", "protein_name": "Synphilin-1", "gene_name": "SNCAIP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92673-1", "protein_name": "Sortilin-related receptor", "gene_name": "SORL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84243-1", "protein_name": "Histone H3.3", "gene_name": "H3-3A; H3-3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15582-1", "protein_name": "Transforming growth factor-beta-induced protein ig-h3", "gene_name": "TGFBI", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02649-1", "protein_name": "Apolipoprotein E", "gene_name": "APOE", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01258-1", "protein_name": "Calcitonin", "gene_name": "CALCA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UJY5-1", "protein_name": "ADP-ribosylation factor-binding protein GGA1", "gene_name": "GGA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05937-1", "protein_name": "Calbindin", "gene_name": "CALB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02766-1", "protein_name": "Transthyretin", "gene_name": "TTR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y287-1", "protein_name": "Integral membrane protein 2B", "gene_name": "ITM2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43255-1", "protein_name": "E3 ubiquitin-protein ligase SIAH2", "gene_name": "SIAH2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62079-1", "protein_name": "Tetraspanin-5", "gene_name": "TSPAN5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86UF1-1", "protein_name": "Tetraspanin-33", "gene_name": "TSPAN33", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62805-1", "protein_name": "Histone H4", "gene_name": "H4C11; H4C12; H4C13; H4C14; H4C15; H4C16; H4C1; H4C2; H4C3; H4C4; H4C5; H4C6; H4C8; H4C9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68431-1", "protein_name": "Histone H3.1", "gene_name": "H3C10; H3C11; H3C12; H3C1; H3C2; H3C3; H3C4; H3C6; H3C7; H3C8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61769-1", "protein_name": "Beta-2-microglobulin", "gene_name": "B2M", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01160-1", "protein_name": "Natriuretic peptides A", "gene_name": "NPPA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06727-1", "protein_name": "Apolipoprotein A-IV", "gene_name": "APOA4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WW43-1", "protein_name": "Gamma-secretase subunit APH-1B", "gene_name": "APH1B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16778-1", "protein_name": "Histone H2B type 2-E", "gene_name": "H2BC21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62807-1", "protein_name": "Histone H2B type 1-C/E/F/G/I", "gene_name": "H2BC10; H2BC4; H2BC6; H2BC7; H2BC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06396-1", "protein_name": "Gelsolin", "gene_name": "GSN", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60260-1", "protein_name": "E3 ubiquitin-protein ligase parkin", "gene_name": "PRKN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01034-1", "protein_name": "Cystatin-C", "gene_name": "CST3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NZ52-1", "protein_name": "ADP-ribosylation factor-binding protein GGA3", "gene_name": "GGA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71DI3-1", "protein_name": "Histone H3.2", "gene_name": "H3C13; H3C14; H3C15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UJY4-1", "protein_name": "ADP-ribosylation factor-binding protein GGA2", "gene_name": "GGA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16104-1", "protein_name": "Histone H2AX", "gene_name": "H2AX", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33778-1", "protein_name": "Histone H2B type 1-B", "gene_name": "H2BC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P58876-1", "protein_name": "Histone H2B type 1-D", "gene_name": "H2BC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A08-1", "protein_name": "Histone H2B type 1-A", "gene_name": "H2BC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23527-1", "protein_name": "Histone H2B type 1-O", "gene_name": "H2BC17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0C5Y9-1", "protein_name": "Histone H2A-Bbd type 1", "gene_name": "H2AB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93008-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 9X", "gene_name": "USP9X", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60814-1", "protein_name": "Histone H2B type 1-K", "gene_name": "H2BC12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93077-1", "protein_name": "Histone H2A type 1-C", "gene_name": "H2AC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93079-1", "protein_name": "Histone H2B type 1-H", "gene_name": "H2BC9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99879-1", "protein_name": "Histone H2B type 1-M", "gene_name": "H2BC14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NG11-1", "protein_name": "Tetraspanin-14", "gene_name": "TSPAN14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHE5-1", "protein_name": "N-acetyltransferase 8", "gene_name": "NAT8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHF3-1", "protein_name": "N-acetyltransferase 8B", "gene_name": "NAT8B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P56817-1", "protein_name": "Beta-secretase 1", "gene_name": "BACE1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG47-1", "protein_name": "Polyubiquitin-B", "gene_name": "UBB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01308-1", "protein_name": "Insulin", "gene_name": "INS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04908-1", "protein_name": "Histone H2A type 1-B/E", "gene_name": "H2AC4; H2AC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06899-1", "protein_name": "Histone H2B type 1-J", "gene_name": "H2BC11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20671-1", "protein_name": "Histone H2A type 1-D", "gene_name": "H2AC7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57053-1", "protein_name": "Histone H2B type F-S", "gene_name": "H2BC12L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16777-1", "protein_name": "Histone H2A type 2-C", "gene_name": "H2AC20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6FI13-1", "protein_name": "Histone H2A type 2-A", "gene_name": "H2AC18; H2AC19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N257-1", "protein_name": "Histone H2B type 3-B", "gene_name": "H2BC26", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99877-1", "protein_name": "Histone H2B type 1-N", "gene_name": "H2BC15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99878-1", "protein_name": "Histone H2A type 1-J", "gene_name": "H2AC14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99880-1", "protein_name": "Histone H2B type 1-L", "gene_name": "H2BC13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08431-1", "protein_name": "Lactadherin", "gene_name": "MFGE8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05067-1", "protein_name": "Amyloid-beta precursor protein", "gene_name": "APP", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14672-1", "protein_name": "Disintegrin and metalloproteinase domain-containing protein 10", "gene_name": "ADAM10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02647-1", "protein_name": "Apolipoprotein A-I", "gene_name": "APOA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IUQ4-1", "protein_name": "E3 ubiquitin-protein ligase SIAH1", "gene_name": "SIAH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG48-1", "protein_name": "Polyubiquitin-C", "gene_name": "UBC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P37840-1", "protein_name": "Alpha-synuclein", "gene_name": "SNCA", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P98160", "url": "https://www.uniprot.org/uniprotkb/P98160" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.16799559", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 81 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The discoidin domain receptor DDR2 is a receptor for type X collagen.", "journal": "Matrix biology : journal of the International Society for Matrix Biology", "date": "2006", "authors": "Leitinger B, Kwan AP", "reference": { "type": "PubMed", "id": "16806867", "url": "https://pubmed.ncbi.nlm.nih.gov/16806867" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P98160-1", "protein_name": "Basement membrane-specific heparan sulfate proteoglycan core protein", "gene_name": "HSPG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02452-1", "protein_name": "Collagen alpha-1(I) chain", "gene_name": "COL1A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00468-1", "protein_name": "Agrin", "gene_name": "AGRN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02751-15", "protein_name": "Fibronectin", "gene_name": "FN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9ULB1-1", "protein_name": "Neurexin-1", "gene_name": "NRXN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53420-1", "protein_name": "Collagen alpha-4(IV) chain", "gene_name": "COL4A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12107-1", "protein_name": "Collagen alpha-1(XI) chain", "gene_name": "COL11A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09038-4", "protein_name": "Fibroblast growth factor 2", "gene_name": "FGF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02766-1", "protein_name": "Transthyretin", "gene_name": "TTR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14031-1", "protein_name": "Collagen alpha-6(IV) chain", "gene_name": "COL4A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20908-1", "protein_name": "Collagen alpha-1(V) chain", "gene_name": "COL5A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02462-1", "protein_name": "Collagen alpha-1(IV) chain", "gene_name": "COL4A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08572-1", "protein_name": "Collagen alpha-2(IV) chain", "gene_name": "COL4A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25940-1", "protein_name": "Collagen alpha-3(V) chain", "gene_name": "COL5A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01955-1", "protein_name": "Collagen alpha-3(IV) chain", "gene_name": "COL4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14118-1", "protein_name": "Dystroglycan 1", "gene_name": "DAG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07942-1", "protein_name": "Laminin subunit beta-1", "gene_name": "LAMB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24043-1", "protein_name": "Laminin subunit alpha-2", "gene_name": "LAMA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25391-1", "protein_name": "Laminin subunit alpha-1", "gene_name": "LAMA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HB63-1", "protein_name": "Netrin-4", "gene_name": "NTN4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6N6-1", "protein_name": "Laminin subunit gamma-3", "gene_name": "LAMC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13753-1", "protein_name": "Laminin subunit gamma-2", "gene_name": "LAMC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11047-1", "protein_name": "Laminin subunit gamma-1", "gene_name": "LAMC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08345-1", "protein_name": "Epithelial discoidin domain-containing receptor 1", "gene_name": "DDR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13751-1", "protein_name": "Laminin subunit beta-3", "gene_name": "LAMB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16787-2", "protein_name": "Laminin subunit alpha-3", "gene_name": "LAMA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16363-1", "protein_name": "Laminin subunit alpha-4", "gene_name": "LAMA4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15230-1", "protein_name": "Laminin subunit alpha-5", "gene_name": "LAMA5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02461-1", "protein_name": "Collagen alpha-1(III) chain", "gene_name": "COL3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13942-1", "protein_name": "Collagen alpha-2(XI) chain", "gene_name": "COL11A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29400-1", "protein_name": "Collagen alpha-5(IV) chain", "gene_name": "COL4A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05997-1", "protein_name": "Collagen alpha-2(V) chain", "gene_name": "COL5A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08123-1", "protein_name": "Collagen alpha-2(I) chain", "gene_name": "COL1A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02458-2", "protein_name": "Collagen alpha-1(II) chain", "gene_name": "COL2A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16832-1", "protein_name": "Discoidin domain-containing receptor 2", "gene_name": "DDR2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11532-1", "protein_name": "Dystrophin", "gene_name": "DMD", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q03692-1", "protein_name": "Collagen alpha-1(X) chain", "gene_name": "COL10A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04085-1", "protein_name": "Platelet-derived growth factor subunit A", "gene_name": "PDGFA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01127-1", "protein_name": "Platelet-derived growth factor subunit B", "gene_name": "PDGFB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55268-1", "protein_name": "Laminin subunit beta-2", "gene_name": "LAMB2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P98160", "url": "https://www.uniprot.org/uniprotkb/P98160" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.16806867", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 40 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Cathepsin s promotes human preadipocyte differentiation: possible involvement of fibronectin degradation.", "journal": "Endocrinology", "date": "2006", "authors": "Taleb S, Cancello R, Clement K, Lacasa D", "reference": { "type": "PubMed", "id": "16825321", "url": "https://pubmed.ncbi.nlm.nih.gov/16825321" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P98160-1", "protein_name": "Basement membrane-specific heparan sulfate proteoglycan core protein", "gene_name": "HSPG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15502-3", "protein_name": "Elastin", "gene_name": "ELN", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43897-1", "protein_name": "Tolloid-like protein 1", "gene_name": "TLL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13444-1", "protein_name": "Disintegrin and metalloproteinase domain-containing protein 15", "gene_name": "ADAM15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92542-1", "protein_name": "Nicastrin", "gene_name": "NCSTN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02751-15", "protein_name": "Fibronectin", "gene_name": "FN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04632-1", "protein_name": "Calpain small subunit 1", "gene_name": "CAPNS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08246-1", "protein_name": "Neutrophil elastase", "gene_name": "ELANE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92743-1", "protein_name": "Serine protease HTRA1", "gene_name": "HTRA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBM4-1", "protein_name": "Opticin", "gene_name": "OPTC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16112-1", "protein_name": "Aggrecan core protein", "gene_name": "ACAN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P03956-1", "protein_name": "Interstitial collagenase", "gene_name": "MMP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39900-1", "protein_name": "Macrophage metalloelastase", "gene_name": "MMP12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14543-1", "protein_name": "Nidogen-1", "gene_name": "NID1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWY4-1", "protein_name": "Signal peptide, CUB and EGF-like domain-containing protein 1", "gene_name": "SCUBE1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35613-1", "protein_name": "Basigin", "gene_name": "BSG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50281-1", "protein_name": "Matrix metalloproteinase-14", "gene_name": "MMP14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TE57-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 16", "gene_name": "ADAMTS16", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNA0-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 5", "gene_name": "ADAMTS5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6MZZ7-1", "protein_name": "Calpain-13", "gene_name": "CAPN13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07711-1", "protein_name": "Procathepsin L", "gene_name": "CTSL", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75808-1", "protein_name": "Calpain-15", "gene_name": "CAPN15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16070-1", "protein_name": "CD44 antigen", "gene_name": "CD44", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08311-1", "protein_name": "Cathepsin G", "gene_name": "CTSG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10451-1", "protein_name": "Osteopontin", "gene_name": "SPP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25774-1", "protein_name": "Cathepsin S", "gene_name": "CTSS", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15484-1", "protein_name": "Calpain-5", "gene_name": "CAPN5", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60911-1", "protein_name": "Cathepsin L2", "gene_name": "CTSV", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07942-1", "protein_name": "Laminin subunit beta-1", "gene_name": "LAMB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49862-1", "protein_name": "Kallikrein-7", "gene_name": "KLK7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13753-1", "protein_name": "Laminin subunit gamma-2", "gene_name": "LAMC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11047-1", "protein_name": "Laminin subunit gamma-1", "gene_name": "LAMC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P45452-1", "protein_name": "Collagenase 3", "gene_name": "MMP13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24347-1", "protein_name": "Stromelysin-3", "gene_name": "MMP11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09238-1", "protein_name": "Stromelysin-2", "gene_name": "MMP10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51511-1", "protein_name": "Matrix metalloproteinase-15", "gene_name": "MMP15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96L46-1", "protein_name": "Calpain small subunit 2", "gene_name": "CAPNS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13751-1", "protein_name": "Laminin subunit beta-3", "gene_name": "LAMB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16787-2", "protein_name": "Laminin subunit alpha-3", "gene_name": "LAMA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15230-1", "protein_name": "Laminin subunit alpha-5", "gene_name": "LAMA5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09237-1", "protein_name": "Matrilysin", "gene_name": "MMP7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6L7-1", "protein_name": "Tolloid-like protein 2", "gene_name": "TLL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42574-1", "protein_name": "Caspase-3", "gene_name": "CASP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00747-1", "protein_name": "Plasminogen", "gene_name": "PLG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14780-1", "protein_name": "Matrix metalloproteinase-9", "gene_name": "MMP9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07585-1", "protein_name": "Decorin", "gene_name": "DCN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6W3-1", "protein_name": "Calpain-7", "gene_name": "CAPN7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13497-1", "protein_name": "Bone morphogenetic protein 1", "gene_name": "BMP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "A6NHC0-1", "protein_name": "Calpain-8", "gene_name": "CAPN8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14815-1", "protein_name": "Calpain-9", "gene_name": "CAPN9", "tax_name": "Human" }, { "uniprot_canonical_ac": "A8MX76-1", "protein_name": "Calpain-14", "gene_name": "CAPN14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12830-1", "protein_name": "Cadherin-1", "gene_name": "CDH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZSI9-1", "protein_name": "Calpain-12", "gene_name": "CAPN12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17655-1", "protein_name": "Calpain-2 catalytic subunit", "gene_name": "CAPN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6Q1-1", "protein_name": "Calpain-6", "gene_name": "CAPN6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08253-1", "protein_name": "72 kDa type IV collagenase", "gene_name": "MMP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IX30-1", "protein_name": "Signal peptide, CUB and EGF-like domain-containing protein 3", "gene_name": "SCUBE3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96GW7-1", "protein_name": "Brevican core protein", "gene_name": "BCAN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TE60-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 18", "gene_name": "ADAMTS18", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75173-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 4", "gene_name": "ADAMTS4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P2N4-3", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 9", "gene_name": "ADAMTS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHI8-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 1", "gene_name": "ADAMTS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UP79-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 8", "gene_name": "ADAMTS8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20807-1", "protein_name": "Calpain-3", "gene_name": "CAPN3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07384-1", "protein_name": "Calpain-1 catalytic subunit", "gene_name": "CAPN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HC96-1", "protein_name": "Calpain-10", "gene_name": "CAPN10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P43235-1", "protein_name": "Cathepsin K", "gene_name": "CTSK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UMQ6-1", "protein_name": "Calpain-11", "gene_name": "CAPN11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35555-1", "protein_name": "Fibrillin-1", "gene_name": "FBN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35556-1", "protein_name": "Fibrillin-2", "gene_name": "FBN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q75N90-1", "protein_name": "Fibrillin-3", "gene_name": "FBN3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20810-1", "protein_name": "Calpastatin", "gene_name": "CAST", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08254-1", "protein_name": "Stromelysin-1", "gene_name": "MMP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22894-1", "protein_name": "Neutrophil collagenase", "gene_name": "MMP8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99542-1", "protein_name": "Matrix metalloproteinase-19", "gene_name": "MMP19", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60882-1", "protein_name": "Matrix metalloproteinase-20", "gene_name": "MMP20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IU80-4", "protein_name": "Transmembrane protease serine 6", "gene_name": "TMPRSS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49768-1", "protein_name": "Presenilin-1", "gene_name": "PSEN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14672-1", "protein_name": "Disintegrin and metalloproteinase domain-containing protein 10", "gene_name": "ADAM10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01023-1", "protein_name": "Alpha-2-macroglobulin", "gene_name": "A2M", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78325-1", "protein_name": "Disintegrin and metalloproteinase domain-containing protein 8", "gene_name": "ADAM8", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P98160", "url": "https://www.uniprot.org/uniprotkb/P98160" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.16825321", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 81 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Cloning of human heparan sulfate proteoglycan core protein, assignment of the gene (HSPG2) to 1p36.1-->p35 and identification of a BamHI restriction fragment length polymorphism.", "journal": "Genomics", "date": "1991", "authors": "Kallunki P, Eddy R L, Byers M G, Kestil\u00e4 M, Shows T B, Tryggvason K", "reference": { "type": "PubMed", "id": "1685141", "url": "https://pubmed.ncbi.nlm.nih.gov/1685141" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P98160-1", "protein_name": "Basement membrane-specific heparan sulfate proteoglycan core protein", "gene_name": "HSPG2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P98160", "url": "https://www.uniprot.org/uniprotkb/P98160" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.1685141", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The synergy site of fibronectin is required for strong interaction with the platelet integrin alphaIIbbeta3.", "journal": "Annals of biomedical engineering", "date": "2006", "authors": "Chada D, Mather T, Nollert MU", "reference": { "type": "PubMed", "id": "16933105", "url": "https://pubmed.ncbi.nlm.nih.gov/16933105" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P98160-1", "protein_name": "Basement membrane-specific heparan sulfate proteoglycan core protein", "gene_name": "HSPG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51884-1", "protein_name": "Lumican", "gene_name": "LUM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02452-1", "protein_name": "Collagen alpha-1(I) chain", "gene_name": "COL1A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18084-1", "protein_name": "Integrin beta-5", "gene_name": "ITGB5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02671-1", "protein_name": "Fibrinogen alpha chain", "gene_name": "FGA", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00468-1", "protein_name": "Agrin", "gene_name": "AGRN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02751-15", "protein_name": "Fibronectin", "gene_name": "FN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08722-1", "protein_name": "Leukocyte surface antigen CD47", "gene_name": "CD47", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53420-1", "protein_name": "Collagen alpha-4(IV) chain", "gene_name": "COL4A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02679-1", "protein_name": "Fibrinogen gamma chain", "gene_name": "FGG", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86Y22-1", "protein_name": "Collagen alpha-1(XXIII) chain", "gene_name": "COL23A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20701-1", "protein_name": "Integrin alpha-L", "gene_name": "ITGAL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05362-1", "protein_name": "Intercellular adhesion molecule 1", "gene_name": "ICAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y624-1", "protein_name": "Junctional adhesion molecule A", "gene_name": "F11R", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35613-1", "protein_name": "Basigin", "gene_name": "BSG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P21815-1", "protein_name": "Integrin-binding sialoprotein", "gene_name": "IBSP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49747-1", "protein_name": "Cartilage oligomeric matrix protein", "gene_name": "COMP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04275-1", "protein_name": "von Willebrand factor", "gene_name": "VWF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07996-1", "protein_name": "Thrombospondin-1", "gene_name": "THBS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16070-1", "protein_name": "CD44 antigen", "gene_name": "CD44", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10451-1", "protein_name": "Osteopontin", "gene_name": "SPP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12110-1", "protein_name": "Collagen alpha-2(VI) chain", "gene_name": "COL6A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14031-1", "protein_name": "Collagen alpha-6(IV) chain", "gene_name": "COL4A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20908-1", "protein_name": "Collagen alpha-1(V) chain", "gene_name": "COL5A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02462-1", "protein_name": "Collagen alpha-1(IV) chain", "gene_name": "COL4A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27658-1", "protein_name": "Collagen alpha-1(VIII) chain", "gene_name": "COL8A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08572-1", "protein_name": "Collagen alpha-2(IV) chain", "gene_name": "COL4A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25067-1", "protein_name": "Collagen alpha-2(VIII) chain", "gene_name": "COL8A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20849-1", "protein_name": "Collagen alpha-1(IX) chain", "gene_name": "COL9A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25940-1", "protein_name": "Collagen alpha-3(V) chain", "gene_name": "COL5A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01955-1", "protein_name": "Collagen alpha-3(IV) chain", "gene_name": "COL4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16284-1", "protein_name": "Platelet endothelial cell adhesion molecule", "gene_name": "PECAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35968-1", "protein_name": "Vascular endothelial growth factor receptor 2", "gene_name": "KDR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13683-1", "protein_name": "Integrin alpha-7", "gene_name": "ITGA7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18564-1", "protein_name": "Integrin beta-6", "gene_name": "ITGB6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11215-1", "protein_name": "Integrin alpha-M", "gene_name": "ITGAM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26006-2", "protein_name": "Integrin alpha-3", "gene_name": "ITGA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08514-1", "protein_name": "Integrin alpha-IIb", "gene_name": "ITGA2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38570-1", "protein_name": "Integrin alpha-E", "gene_name": "ITGAE", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75578-1", "protein_name": "Integrin alpha-10", "gene_name": "ITGA10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06756-1", "protein_name": "Integrin alpha-V", "gene_name": "ITGAV", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53708-1", "protein_name": "Integrin alpha-8", "gene_name": "ITGA8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13349-1", "protein_name": "Integrin alpha-D", "gene_name": "ITGAD", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKX5-1", "protein_name": "Integrin alpha-11", "gene_name": "ITGA11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08648-1", "protein_name": "Integrin alpha-5", "gene_name": "ITGA5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13612-1", "protein_name": "Integrin alpha-4", "gene_name": "ITGA4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05556-1", "protein_name": "Integrin beta-1", "gene_name": "ITGB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02461-1", "protein_name": "Collagen alpha-1(III) chain", "gene_name": "COL3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07092-1", "protein_name": "Collagen alpha-1(XVI) chain", "gene_name": "COL16A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29400-1", "protein_name": "Collagen alpha-5(IV) chain", "gene_name": "COL4A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14055-1", "protein_name": "Collagen alpha-2(IX) chain", "gene_name": "COL9A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "A8TX70-1", "protein_name": "Collagen alpha-5(VI) chain", "gene_name": "COL6A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05997-1", "protein_name": "Collagen alpha-2(V) chain", "gene_name": "COL5A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "A6NMZ7-1", "protein_name": "Collagen alpha-6(VI) chain", "gene_name": "COL6A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12111-1", "protein_name": "Collagen alpha-3(VI) chain", "gene_name": "COL6A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5TAT6-1", "protein_name": "Collagen alpha-1(XIII) chain", "gene_name": "COL13A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08123-1", "protein_name": "Collagen alpha-2(I) chain", "gene_name": "COL1A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12109-1", "protein_name": "Collagen alpha-1(VI) chain", "gene_name": "COL6A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02458-2", "protein_name": "Collagen alpha-1(II) chain", "gene_name": "COL2A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02388-1", "protein_name": "Collagen alpha-1(VII) chain", "gene_name": "COL7A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14050-1", "protein_name": "Collagen alpha-3(IX) chain", "gene_name": "COL9A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02675-1", "protein_name": "Fibrinogen beta chain", "gene_name": "FGB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26010-1", "protein_name": "Integrin beta-7", "gene_name": "ITGB7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05106-1", "protein_name": "Integrin beta-3", "gene_name": "ITGB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q03692-1", "protein_name": "Collagen alpha-1(X) chain", "gene_name": "COL10A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12830-1", "protein_name": "Cadherin-1", "gene_name": "CDH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04004-1", "protein_name": "Vitronectin", "gene_name": "VTN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23229-1", "protein_name": "Integrin alpha-6", "gene_name": "ITGA6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14773-1", "protein_name": "Intercellular adhesion molecule 4", "gene_name": "ICAM4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13797-1", "protein_name": "Integrin alpha-9", "gene_name": "ITGA9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32942-1", "protein_name": "Intercellular adhesion molecule 3", "gene_name": "ICAM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UMF0-1", "protein_name": "Intercellular adhesion molecule 5", "gene_name": "ICAM5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20702-1", "protein_name": "Integrin alpha-X", "gene_name": "ITGAX", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BX67-1", "protein_name": "Junctional adhesion molecule C", "gene_name": "JAM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17301-1", "protein_name": "Integrin alpha-2", "gene_name": "ITGA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57087-1", "protein_name": "Junctional adhesion molecule B", "gene_name": "JAM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26012-1", "protein_name": "Integrin beta-8", "gene_name": "ITGB8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P56199-1", "protein_name": "Integrin alpha-1", "gene_name": "ITGA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19320-1", "protein_name": "Vascular cell adhesion protein 1", "gene_name": "VCAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35555-1", "protein_name": "Fibrillin-1", "gene_name": "FBN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13598-1", "protein_name": "Intercellular adhesion molecule 2", "gene_name": "ICAM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24821-1", "protein_name": "Tenascin", "gene_name": "TNC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39060-3", "protein_name": "Collagen alpha-1(XVIII) chain", "gene_name": "COL18A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05107-1", "protein_name": "Integrin beta-2", "gene_name": "ITGB2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P98160", "url": "https://www.uniprot.org/uniprotkb/P98160" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.16933105", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 84 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Palmitoyl transferase activity of lecithin retinol acyl transferase.", "journal": "Biochemistry", "date": "2006", "authors": "Xue L, Jahng WJ, Gollapalli D, Rando RR", "reference": { "type": "PubMed", "id": "16939223", "url": "https://pubmed.ncbi.nlm.nih.gov/16939223" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P98160-1", "protein_name": "Basement membrane-specific heparan sulfate proteoglycan core protein", "gene_name": "HSPG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02753-1", "protein_name": "Retinol-binding protein 4", "gene_name": "RBP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75056-1", "protein_name": "Syndecan-3", "gene_name": "SDC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00468-1", "protein_name": "Agrin", "gene_name": "AGRN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17516-1", "protein_name": "Aldo-keto reductase family 1 member C4", "gene_name": "AKR1C4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04114-1", "protein_name": "Apolipoprotein B-100", "gene_name": "APOB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07954-1", "protein_name": "Prolow-density lipoprotein receptor-related protein 1", "gene_name": "LRP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95445-1", "protein_name": "Apolipoprotein M", "gene_name": "APOM", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q04828-1", "protein_name": "Aldo-keto reductase family 1 member C1", "gene_name": "AKR1C1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02655-1", "protein_name": "Apolipoprotein C-II", "gene_name": "APOC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42330-1", "protein_name": "Aldo-keto reductase family 1 member C3", "gene_name": "AKR1C3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04118-1", "protein_name": "Colipase", "gene_name": "CLPS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51654-1", "protein_name": "Glypican-3", "gene_name": "GPC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95237-1", "protein_name": "Lecithin retinol acyltransferase", "gene_name": "LRAT", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09455-1", "protein_name": "Retinol-binding protein 1", "gene_name": "RBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TC12-1", "protein_name": "Retinol dehydrogenase 11", "gene_name": "RDH11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50120-1", "protein_name": "Retinol-binding protein 2", "gene_name": "RBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6NUM9-1", "protein_name": "All-trans-retinol 13,14-reductase", "gene_name": "RETSAT", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18827-1", "protein_name": "Syndecan-1", "gene_name": "SDC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02656-1", "protein_name": "Apolipoprotein C-III", "gene_name": "APOC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02649-1", "protein_name": "Apolipoprotein E", "gene_name": "APOE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HAY6-1", "protein_name": "Beta,beta-carotene 15,15'-dioxygenase", "gene_name": "BCO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02766-1", "protein_name": "Transthyretin", "gene_name": "TTR", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31431-1", "protein_name": "Syndecan-4", "gene_name": "SDC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16233-1", "protein_name": "Pancreatic triacylglycerol lipase", "gene_name": "PNLIP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y625-1", "protein_name": "Glypican-6", "gene_name": "GPC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N158-1", "protein_name": "Glypican-2", "gene_name": "GPC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y561-1", "protein_name": "Low-density lipoprotein receptor-related protein 12", "gene_name": "LRP12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P98164-1", "protein_name": "Low-density lipoprotein receptor-related protein 2", "gene_name": "LRP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "F6RLW9-1", "protein_name": "Lecithin retinol acyltransferase", "gene_name": "LRAT", "tax_name": "Bovine" }, { "uniprot_canonical_ac": "P02652-1", "protein_name": "Apolipoprotein A-II", "gene_name": "APOA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14114-1", "protein_name": "Low-density lipoprotein receptor-related protein 8", "gene_name": "LRP8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06727-1", "protein_name": "Apolipoprotein A-IV", "gene_name": "APOA4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01130-1", "protein_name": "Low-density lipoprotein receptor", "gene_name": "LDLR", "tax_name": "Human" }, { "uniprot_canonical_ac": "P34741-1", "protein_name": "Syndecan-2", "gene_name": "SDC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78333-1", "protein_name": "Glypican-5", "gene_name": "GPC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35052-1", "protein_name": "Glypican-1", "gene_name": "GPC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P1J6-1", "protein_name": "Phospholipase B1, membrane-associated", "gene_name": "PLB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BYV7-1", "protein_name": "Carotenoid-cleaving dioxygenase, mitochondrial", "gene_name": "BCO2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75487-1", "protein_name": "Glypican-4", "gene_name": "GPC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IV16-1", "protein_name": "Glycosylphosphatidylinositol-anchored high density lipoprotein-binding protein 1", "gene_name": "GPIHBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06858-1", "protein_name": "Lipoprotein lipase", "gene_name": "LPL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z4F1-1", "protein_name": "Low-density lipoprotein receptor-related protein 10", "gene_name": "LRP10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02647-1", "protein_name": "Apolipoprotein A-I", "gene_name": "APOA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60218-1", "protein_name": "Aldo-keto reductase family 1 member B10", "gene_name": "AKR1B10", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P98160", "url": "https://www.uniprot.org/uniprotkb/P98160" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.16939223", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 45 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Identification of the gene encoding the enzyme deficient in mucopolysaccharidosis IIIC (Sanfilippo disease type C).", "journal": "American journal of human genetics", "date": "2006", "authors": "Fan X, Zhang H, Zhang S, Bagshaw RD, Tropak MB, Callahan JW, Mahuran DJ", "reference": { "type": "PubMed", "id": "16960811", "url": "https://pubmed.ncbi.nlm.nih.gov/16960811" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P98160-1", "protein_name": "Basement membrane-specific heparan sulfate proteoglycan core protein", "gene_name": "HSPG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75056-1", "protein_name": "Syndecan-3", "gene_name": "SDC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P54802-1", "protein_name": "Alpha-N-acetylglucosaminidase", "gene_name": "NAGLU", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00468-1", "protein_name": "Agrin", "gene_name": "AGRN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51654-1", "protein_name": "Glypican-3", "gene_name": "GPC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22304-1", "protein_name": "Iduronate 2-sulfatase", "gene_name": "IDS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35475-1", "protein_name": "Alpha-L-iduronidase", "gene_name": "IDUA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51688-1", "protein_name": "N-sulphoglucosamine sulphohydrolase", "gene_name": "SGSH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q3UDW8-1", "protein_name": "Heparan-alpha-glucosaminide N-acetyltransferase", "gene_name": "Hgsnat", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P18827-1", "protein_name": "Syndecan-1", "gene_name": "SDC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07711-1", "protein_name": "Procathepsin L", "gene_name": "CTSL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31431-1", "protein_name": "Syndecan-4", "gene_name": "SDC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y625-1", "protein_name": "Glypican-6", "gene_name": "GPC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N158-1", "protein_name": "Glypican-2", "gene_name": "GPC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P34741-1", "protein_name": "Syndecan-2", "gene_name": "SDC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78333-1", "protein_name": "Glypican-5", "gene_name": "GPC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35052-1", "protein_name": "Glypican-1", "gene_name": "GPC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WWQ2-1", "protein_name": "Inactive heparanase-2", "gene_name": "HPSE2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y251-1", "protein_name": "Heparanase", "gene_name": "HPSE", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75487-1", "protein_name": "Glypican-4", "gene_name": "GPC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q68CP4-1", "protein_name": "Heparan-alpha-glucosaminide N-acetyltransferase", "gene_name": "HGSNAT", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P98160", "url": "https://www.uniprot.org/uniprotkb/P98160" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.16960811", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 21 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A highly potent inhibitor of cathepsin K (relacatib) reduces biomarkers of bone resorption both in vitro and in an acute model of elevated bone turnover in vivo in monkeys.", "journal": "Bone", "date": "2007", "authors": "Kumar S, Dare L, Vasko-Moser JA, James IE, Blake SM, Rickard DJ, Hwang SM, Tomaszek T, Yamashita DS, Marquis RW, Oh H, Jeong JU, Veber DF, Gowen M, Lark MW, Stroup G", "reference": { "type": "PubMed", "id": "16962401", "url": "https://pubmed.ncbi.nlm.nih.gov/16962401" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P98160-1", "protein_name": "Basement membrane-specific heparan sulfate proteoglycan core protein", "gene_name": "HSPG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75056-1", "protein_name": "Syndecan-3", "gene_name": "SDC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00468-1", "protein_name": "Agrin", "gene_name": "AGRN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09958-1", "protein_name": "Furin", "gene_name": "FURIN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51654-1", "protein_name": "Glypican-3", "gene_name": "GPC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18827-1", "protein_name": "Syndecan-1", "gene_name": "SDC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07711-1", "protein_name": "Procathepsin L", "gene_name": "CTSL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31431-1", "protein_name": "Syndecan-4", "gene_name": "SDC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y625-1", "protein_name": "Glypican-6", "gene_name": "GPC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N158-1", "protein_name": "Glypican-2", "gene_name": "GPC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BYF1-1", "protein_name": "Angiotensin-converting enzyme 2", "gene_name": "ACE2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55072-1", "protein_name": "Transitional endoplasmic reticulum ATPase", "gene_name": "VCP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P34741-1", "protein_name": "Syndecan-2", "gene_name": "SDC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14786-1", "protein_name": "Neuropilin-1", "gene_name": "NRP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78333-1", "protein_name": "Glypican-5", "gene_name": "GPC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35052-1", "protein_name": "Glypican-1", "gene_name": "GPC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96D42-1", "protein_name": "Hepatitis A virus cellular receptor 1", "gene_name": "HAVCR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15393-1", "protein_name": "Transmembrane protease serine 2", "gene_name": "TMPRSS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75487-1", "protein_name": "Glypican-4", "gene_name": "GPC4", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P98160", "url": "https://www.uniprot.org/uniprotkb/P98160" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.16962401", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 19 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Sequence identity between the alpha 2-macroglobulin receptor and low density lipoprotein receptor-related protein suggests that this molecule is a multifunctional receptor.", "journal": "The Journal of biological chemistry", "date": "1990", "authors": "Strickland DK, Ashcom JD, Williams S, Burgess WH, Migliorini M, Argraves WS", "reference": { "type": "PubMed", "id": "1698775", "url": "https://pubmed.ncbi.nlm.nih.gov/1698775" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P98160-1", "protein_name": "Basement membrane-specific heparan sulfate proteoglycan core protein", "gene_name": "HSPG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15502-3", "protein_name": "Elastin", "gene_name": "ELN", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43897-1", "protein_name": "Tolloid-like protein 1", "gene_name": "TLL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13444-1", "protein_name": "Disintegrin and metalloproteinase domain-containing protein 15", "gene_name": "ADAM15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92542-1", "protein_name": "Nicastrin", "gene_name": "NCSTN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02751-15", "protein_name": "Fibronectin", "gene_name": "FN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07954-1", "protein_name": "Prolow-density lipoprotein receptor-related protein 1", "gene_name": "LRP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04632-1", "protein_name": "Calpain small subunit 1", "gene_name": "CAPNS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08246-1", "protein_name": "Neutrophil elastase", "gene_name": "ELANE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92743-1", "protein_name": "Serine protease HTRA1", "gene_name": "HTRA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBM4-1", "protein_name": "Opticin", "gene_name": "OPTC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16112-1", "protein_name": "Aggrecan core protein", "gene_name": "ACAN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P03956-1", "protein_name": "Interstitial collagenase", "gene_name": "MMP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39900-1", "protein_name": "Macrophage metalloelastase", "gene_name": "MMP12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14543-1", "protein_name": "Nidogen-1", "gene_name": "NID1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWY4-1", "protein_name": "Signal peptide, CUB and EGF-like domain-containing protein 1", "gene_name": "SCUBE1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35613-1", "protein_name": "Basigin", "gene_name": "BSG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50281-1", "protein_name": "Matrix metalloproteinase-14", "gene_name": "MMP14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TE57-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 16", "gene_name": "ADAMTS16", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNA0-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 5", "gene_name": "ADAMTS5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6MZZ7-1", "protein_name": "Calpain-13", "gene_name": "CAPN13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07711-1", "protein_name": "Procathepsin L", "gene_name": "CTSL", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75808-1", "protein_name": "Calpain-15", "gene_name": "CAPN15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16070-1", "protein_name": "CD44 antigen", "gene_name": "CD44", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08311-1", "protein_name": "Cathepsin G", "gene_name": "CTSG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10451-1", "protein_name": "Osteopontin", "gene_name": "SPP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25774-1", "protein_name": "Cathepsin S", "gene_name": "CTSS", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15484-1", "protein_name": "Calpain-5", "gene_name": "CAPN5", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60911-1", "protein_name": "Cathepsin L2", "gene_name": "CTSV", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07942-1", "protein_name": "Laminin subunit beta-1", "gene_name": "LAMB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49862-1", "protein_name": "Kallikrein-7", "gene_name": "KLK7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13753-1", "protein_name": "Laminin subunit gamma-2", "gene_name": "LAMC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11047-1", "protein_name": "Laminin subunit gamma-1", "gene_name": "LAMC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P45452-1", "protein_name": "Collagenase 3", "gene_name": "MMP13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24347-1", "protein_name": "Stromelysin-3", "gene_name": "MMP11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09238-1", "protein_name": "Stromelysin-2", "gene_name": "MMP10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51511-1", "protein_name": "Matrix metalloproteinase-15", "gene_name": "MMP15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96L46-1", "protein_name": "Calpain small subunit 2", "gene_name": "CAPNS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13751-1", "protein_name": "Laminin subunit beta-3", "gene_name": "LAMB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16787-2", "protein_name": "Laminin subunit alpha-3", "gene_name": "LAMA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15230-1", "protein_name": "Laminin subunit alpha-5", "gene_name": "LAMA5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09237-1", "protein_name": "Matrilysin", "gene_name": "MMP7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6L7-1", "protein_name": "Tolloid-like protein 2", "gene_name": "TLL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42574-1", "protein_name": "Caspase-3", "gene_name": "CASP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00747-1", "protein_name": "Plasminogen", "gene_name": "PLG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14780-1", "protein_name": "Matrix metalloproteinase-9", "gene_name": "MMP9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07585-1", "protein_name": "Decorin", "gene_name": "DCN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6W3-1", "protein_name": "Calpain-7", "gene_name": "CAPN7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13497-1", "protein_name": "Bone morphogenetic protein 1", "gene_name": "BMP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "A6NHC0-1", "protein_name": "Calpain-8", "gene_name": "CAPN8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14815-1", "protein_name": "Calpain-9", "gene_name": "CAPN9", "tax_name": "Human" }, { "uniprot_canonical_ac": "A8MX76-1", "protein_name": "Calpain-14", "gene_name": "CAPN14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12830-1", "protein_name": "Cadherin-1", "gene_name": "CDH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZSI9-1", "protein_name": "Calpain-12", "gene_name": "CAPN12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17655-1", "protein_name": "Calpain-2 catalytic subunit", "gene_name": "CAPN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6Q1-1", "protein_name": "Calpain-6", "gene_name": "CAPN6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08253-1", "protein_name": "72 kDa type IV collagenase", "gene_name": "MMP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IX30-1", "protein_name": "Signal peptide, CUB and EGF-like domain-containing protein 3", "gene_name": "SCUBE3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96GW7-1", "protein_name": "Brevican core protein", "gene_name": "BCAN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TE60-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 18", "gene_name": "ADAMTS18", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75173-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 4", "gene_name": "ADAMTS4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P2N4-3", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 9", "gene_name": "ADAMTS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHI8-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 1", "gene_name": "ADAMTS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UP79-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 8", "gene_name": "ADAMTS8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20807-1", "protein_name": "Calpain-3", "gene_name": "CAPN3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07384-1", "protein_name": "Calpain-1 catalytic subunit", "gene_name": "CAPN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HC96-1", "protein_name": "Calpain-10", "gene_name": "CAPN10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P43235-1", "protein_name": "Cathepsin K", "gene_name": "CTSK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UMQ6-1", "protein_name": "Calpain-11", "gene_name": "CAPN11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35555-1", "protein_name": "Fibrillin-1", "gene_name": "FBN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35556-1", "protein_name": "Fibrillin-2", "gene_name": "FBN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q75N90-1", "protein_name": "Fibrillin-3", "gene_name": "FBN3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20810-1", "protein_name": "Calpastatin", "gene_name": "CAST", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08254-1", "protein_name": "Stromelysin-1", "gene_name": "MMP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22894-1", "protein_name": "Neutrophil collagenase", "gene_name": "MMP8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99542-1", "protein_name": "Matrix metalloproteinase-19", "gene_name": "MMP19", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60882-1", "protein_name": "Matrix metalloproteinase-20", "gene_name": "MMP20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IU80-4", "protein_name": "Transmembrane protease serine 6", "gene_name": "TMPRSS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49768-1", "protein_name": "Presenilin-1", "gene_name": "PSEN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14672-1", "protein_name": "Disintegrin and metalloproteinase domain-containing protein 10", "gene_name": "ADAM10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01023-1", "protein_name": "Alpha-2-macroglobulin", "gene_name": "A2M", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78325-1", "protein_name": "Disintegrin and metalloproteinase domain-containing protein 8", "gene_name": "ADAM8", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P98160", "url": "https://www.uniprot.org/uniprotkb/P98160" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.1698775", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 82 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Mutations in TMEM76* cause mucopolysaccharidosis IIIC (Sanfilippo C syndrome).", "journal": "American journal of human genetics", "date": "2006", "authors": "Hrebicek M, Mrazova L, Seyrantepe V, Durand S, Roslin NM, Noskova L, Hartmannova H, Ivanek R, Cizkova A, Poupetova H, Sikora J, Urinovska J, Stranecky V, Zeman J, Lepage P, Roquis D, Verner A, Ausseil J, Beesley CE, Maire I, Poorthuis BJ, van de Kamp J, van Diggelen OP, Wevers RA, Hudson TJ, Fujiwara TM, Majewski J, Morgan K, Kmoch S, Pshezhetsky AV", "reference": { "type": "PubMed", "id": "17033958", "url": "https://pubmed.ncbi.nlm.nih.gov/17033958" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P98160-1", "protein_name": "Basement membrane-specific heparan sulfate proteoglycan core protein", "gene_name": "HSPG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75056-1", "protein_name": "Syndecan-3", "gene_name": "SDC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P54802-1", "protein_name": "Alpha-N-acetylglucosaminidase", "gene_name": "NAGLU", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00468-1", "protein_name": "Agrin", "gene_name": "AGRN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51654-1", "protein_name": "Glypican-3", "gene_name": "GPC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22304-1", "protein_name": "Iduronate 2-sulfatase", "gene_name": "IDS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35475-1", "protein_name": "Alpha-L-iduronidase", "gene_name": "IDUA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51688-1", "protein_name": "N-sulphoglucosamine sulphohydrolase", "gene_name": "SGSH", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18827-1", "protein_name": "Syndecan-1", "gene_name": "SDC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07711-1", "protein_name": "Procathepsin L", "gene_name": "CTSL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31431-1", "protein_name": "Syndecan-4", "gene_name": "SDC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y625-1", "protein_name": "Glypican-6", "gene_name": "GPC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N158-1", "protein_name": "Glypican-2", "gene_name": "GPC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P34741-1", "protein_name": "Syndecan-2", "gene_name": "SDC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78333-1", "protein_name": "Glypican-5", "gene_name": "GPC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35052-1", "protein_name": "Glypican-1", "gene_name": "GPC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WWQ2-1", "protein_name": "Inactive heparanase-2", "gene_name": "HPSE2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y251-1", "protein_name": "Heparanase", "gene_name": "HPSE", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75487-1", "protein_name": "Glypican-4", "gene_name": "GPC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q68CP4-1", "protein_name": "Heparan-alpha-glucosaminide N-acetyltransferase", "gene_name": "HGSNAT", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P98160", "url": "https://www.uniprot.org/uniprotkb/P98160" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.17033958", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 20 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Hyaluronan and its binding proteins, the hyaladherins.", "journal": "Current opinion in cell biology", "date": "1990", "authors": "Toole BP", "reference": { "type": "PubMed", "id": "1707285", "url": "https://pubmed.ncbi.nlm.nih.gov/1707285" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P98160-1", "protein_name": "Basement membrane-specific heparan sulfate proteoglycan core protein", "gene_name": "HSPG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15502-3", "protein_name": "Elastin", "gene_name": "ELN", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43897-1", "protein_name": "Tolloid-like protein 1", "gene_name": "TLL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13444-1", "protein_name": "Disintegrin and metalloproteinase domain-containing protein 15", "gene_name": "ADAM15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92542-1", "protein_name": "Nicastrin", "gene_name": "NCSTN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02751-15", "protein_name": "Fibronectin", "gene_name": "FN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04632-1", "protein_name": "Calpain small subunit 1", "gene_name": "CAPNS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08246-1", "protein_name": "Neutrophil elastase", "gene_name": "ELANE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92743-1", "protein_name": "Serine protease HTRA1", "gene_name": "HTRA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBM4-1", "protein_name": "Opticin", "gene_name": "OPTC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16112-1", "protein_name": "Aggrecan core protein", "gene_name": "ACAN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P03956-1", "protein_name": "Interstitial collagenase", "gene_name": "MMP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39900-1", "protein_name": "Macrophage metalloelastase", "gene_name": "MMP12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14543-1", "protein_name": "Nidogen-1", "gene_name": "NID1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWY4-1", "protein_name": "Signal peptide, CUB and EGF-like domain-containing protein 1", "gene_name": "SCUBE1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35613-1", "protein_name": "Basigin", "gene_name": "BSG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50281-1", "protein_name": "Matrix metalloproteinase-14", "gene_name": "MMP14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TE57-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 16", "gene_name": "ADAMTS16", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNA0-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 5", "gene_name": "ADAMTS5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6MZZ7-1", "protein_name": "Calpain-13", "gene_name": "CAPN13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07711-1", "protein_name": "Procathepsin L", "gene_name": "CTSL", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75808-1", "protein_name": "Calpain-15", "gene_name": "CAPN15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16070-1", "protein_name": "CD44 antigen", "gene_name": "CD44", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08311-1", "protein_name": "Cathepsin G", "gene_name": "CTSG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10451-1", "protein_name": "Osteopontin", "gene_name": "SPP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25774-1", "protein_name": "Cathepsin S", "gene_name": "CTSS", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15484-1", "protein_name": "Calpain-5", "gene_name": "CAPN5", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60911-1", "protein_name": "Cathepsin L2", "gene_name": "CTSV", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07942-1", "protein_name": "Laminin subunit beta-1", "gene_name": "LAMB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49862-1", "protein_name": "Kallikrein-7", "gene_name": "KLK7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13753-1", "protein_name": "Laminin subunit gamma-2", "gene_name": "LAMC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11047-1", "protein_name": "Laminin subunit gamma-1", "gene_name": "LAMC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P45452-1", "protein_name": "Collagenase 3", "gene_name": "MMP13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24347-1", "protein_name": "Stromelysin-3", "gene_name": "MMP11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09238-1", "protein_name": "Stromelysin-2", "gene_name": "MMP10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51511-1", "protein_name": "Matrix metalloproteinase-15", "gene_name": "MMP15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96L46-1", "protein_name": "Calpain small subunit 2", "gene_name": "CAPNS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13751-1", "protein_name": "Laminin subunit beta-3", "gene_name": "LAMB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16787-2", "protein_name": "Laminin subunit alpha-3", "gene_name": "LAMA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15230-1", "protein_name": "Laminin subunit alpha-5", "gene_name": "LAMA5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09237-1", "protein_name": "Matrilysin", "gene_name": "MMP7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6L7-1", "protein_name": "Tolloid-like protein 2", "gene_name": "TLL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42574-1", "protein_name": "Caspase-3", "gene_name": "CASP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00747-1", "protein_name": "Plasminogen", "gene_name": "PLG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14780-1", "protein_name": "Matrix metalloproteinase-9", "gene_name": "MMP9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07585-1", "protein_name": "Decorin", "gene_name": "DCN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6W3-1", "protein_name": "Calpain-7", "gene_name": "CAPN7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13497-1", "protein_name": "Bone morphogenetic protein 1", "gene_name": "BMP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "A6NHC0-1", "protein_name": "Calpain-8", "gene_name": "CAPN8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14815-1", "protein_name": "Calpain-9", "gene_name": "CAPN9", "tax_name": "Human" }, { "uniprot_canonical_ac": "A8MX76-1", "protein_name": "Calpain-14", "gene_name": "CAPN14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12830-1", "protein_name": "Cadherin-1", "gene_name": "CDH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZSI9-1", "protein_name": "Calpain-12", "gene_name": "CAPN12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17655-1", "protein_name": "Calpain-2 catalytic subunit", "gene_name": "CAPN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6Q1-1", "protein_name": "Calpain-6", "gene_name": "CAPN6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08253-1", "protein_name": "72 kDa type IV collagenase", "gene_name": "MMP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IX30-1", "protein_name": "Signal peptide, CUB and EGF-like domain-containing protein 3", "gene_name": "SCUBE3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96GW7-1", "protein_name": "Brevican core protein", "gene_name": "BCAN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TE60-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 18", "gene_name": "ADAMTS18", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75173-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 4", "gene_name": "ADAMTS4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P2N4-3", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 9", "gene_name": "ADAMTS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHI8-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 1", "gene_name": "ADAMTS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UP79-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 8", "gene_name": "ADAMTS8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20807-1", "protein_name": "Calpain-3", "gene_name": "CAPN3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07384-1", "protein_name": "Calpain-1 catalytic subunit", "gene_name": "CAPN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HC96-1", "protein_name": "Calpain-10", "gene_name": "CAPN10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P43235-1", "protein_name": "Cathepsin K", "gene_name": "CTSK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UMQ6-1", "protein_name": "Calpain-11", "gene_name": "CAPN11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35555-1", "protein_name": "Fibrillin-1", "gene_name": "FBN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35556-1", "protein_name": "Fibrillin-2", "gene_name": "FBN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q75N90-1", "protein_name": "Fibrillin-3", "gene_name": "FBN3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20810-1", "protein_name": "Calpastatin", "gene_name": "CAST", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08254-1", "protein_name": "Stromelysin-1", "gene_name": "MMP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22894-1", "protein_name": "Neutrophil collagenase", "gene_name": "MMP8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99542-1", "protein_name": "Matrix metalloproteinase-19", "gene_name": "MMP19", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60882-1", "protein_name": "Matrix metalloproteinase-20", "gene_name": "MMP20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IU80-4", "protein_name": "Transmembrane protease serine 6", "gene_name": "TMPRSS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49768-1", "protein_name": "Presenilin-1", "gene_name": "PSEN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14672-1", "protein_name": "Disintegrin and metalloproteinase domain-containing protein 10", "gene_name": "ADAM10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01023-1", "protein_name": "Alpha-2-macroglobulin", "gene_name": "A2M", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78325-1", "protein_name": "Disintegrin and metalloproteinase domain-containing protein 8", "gene_name": "ADAM8", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P98160", "url": "https://www.uniprot.org/uniprotkb/P98160" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.1707285", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 81 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Distorted relation between mRNA copy number and corresponding major histocompatibility complex ligand density on the cell surface.", "journal": "Molecular & cellular proteomics : MCP", "date": "2007-01", "authors": "Weinzierl Andreas O, Lemmel Claudia, Schoor Oliver, M\u00fcller Margret, Kr\u00fcger Tobias, Wernet Dorothee, Hennenlotter J\u00f6rg, Stenzl Arnulf, Klingel Karin, Rammensee Hans-Georg, Stevanovic Stefan", "reference": { "type": "PubMed", "id": "17074750", "url": "https://pubmed.ncbi.nlm.nih.gov/17074750" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P98160-1", "protein_name": "Basement membrane-specific heparan sulfate proteoglycan core protein", "gene_name": "HSPG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O76021-1", "protein_name": "Ribosomal L1 domain-containing protein 1", "gene_name": "RSL1D1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y490-1", "protein_name": "Talin-1", "gene_name": "TLN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BY9-1", "protein_name": "Store-operated calcium entry-associated regulatory factor", "gene_name": "SARAF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62917-1", "protein_name": "Large ribosomal subunit protein uL2", "gene_name": "RPL8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62701-1", "protein_name": "Small ribosomal subunit protein eS4, X isoform", "gene_name": "RPS4X", "tax_name": "Human" }, { "uniprot_canonical_ac": "A8MWD9-1", "protein_name": "Putative small nuclear ribonucleoprotein G-like protein 15", "gene_name": "SNRPGP15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6T310-1", "protein_name": "Ras-like protein family member 11A", "gene_name": "RASL11A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HBL0-3", "protein_name": "Tensin-1", "gene_name": "TNS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q4KMQ2-1", "protein_name": "Anoctamin-6", "gene_name": "ANO6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14643-1", "protein_name": "Inositol 1,4,5-trisphosphate-gated calcium channel ITPR1", "gene_name": "ITPR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14791-1", "protein_name": "Apolipoprotein L1", "gene_name": "APOL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14240-1", "protein_name": "Eukaryotic initiation factor 4A-II", "gene_name": "EIF4A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84085-1", "protein_name": "ADP-ribosylation factor 5", "gene_name": "ARF5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09525-1", "protein_name": "Annexin A4", "gene_name": "ANXA4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXD5-1", "protein_name": "N-acetylneuraminate lyase", "gene_name": "NPL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y696-1", "protein_name": "Chloride intracellular channel protein 4", "gene_name": "CLIC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UH99-1", "protein_name": "SUN domain-containing protein 2", "gene_name": "SUN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NZA1-1", "protein_name": "Chloride intracellular channel protein 5", "gene_name": "CLIC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NTK1-1", "protein_name": "Protein DEPP1", "gene_name": "DEPP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKA1-1", "protein_name": "F-box/LRR-repeat protein 5", "gene_name": "FBXL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5RKV6-1", "protein_name": "Exosome complex component MTR3", "gene_name": "EXOSC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P2B2-1", "protein_name": "Prostaglandin F2 receptor negative regulator", "gene_name": "PTGFRN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09601-1", "protein_name": "Heme oxygenase 1", "gene_name": "HMOX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24001-1", "protein_name": "Interleukin-32", "gene_name": "IL32", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6TFL4-1", "protein_name": "Kelch-like protein 24", "gene_name": "KLHL24", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q00266-1", "protein_name": "S-adenosylmethionine synthase isoform type-1", "gene_name": "MAT1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75643-1", "protein_name": "U5 small nuclear ribonucleoprotein 200 kDa helicase", "gene_name": "SNRNP200", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15527-1", "protein_name": "N-glycosylase/DNA lyase", "gene_name": "OGG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N138-1", "protein_name": "ORM1-like protein 3", "gene_name": "ORMDL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62851-1", "protein_name": "Small ribosomal subunit protein eS25", "gene_name": "RPS25", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75563-1", "protein_name": "Src kinase-associated phosphoprotein 2", "gene_name": "SKAP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62241-1", "protein_name": "Small ribosomal subunit protein eS8", "gene_name": "RPS8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13797-1", "protein_name": "Plastin-3", "gene_name": "PLS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6Q2-1", "protein_name": "Stonin-1", "gene_name": "STON1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92503-1", "protein_name": "SEC14-like protein 1", "gene_name": "SEC14L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35613-1", "protein_name": "Basigin", "gene_name": "BSG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55061-1", "protein_name": "Bax inhibitor 1", "gene_name": "TMBIM6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q03001-7", "protein_name": "Dystonin", "gene_name": "DST", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60660-1", "protein_name": "Myosin light polypeptide 6", "gene_name": "MYL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99814-1", "protein_name": "Endothelial PAS domain-containing protein 1", "gene_name": "EPAS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUJ2-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein U-like protein 1", "gene_name": "HNRNPUL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05026-1", "protein_name": "Sodium/potassium-transporting ATPase subunit beta-1", "gene_name": "ATP1B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19387-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02747-1", "protein_name": "Complement C1q subcomponent subunit C", "gene_name": "C1QC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14094-1", "protein_name": "Cyclin-I", "gene_name": "CCNI", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25063-1", "protein_name": "Signal transducer CD24", "gene_name": "CD24", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WUM4-1", "protein_name": "Programmed cell death 6-interacting protein", "gene_name": "PDCD6IP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y646-1", "protein_name": "Carboxypeptidase Q", "gene_name": "CPQ", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12110-1", "protein_name": "Collagen alpha-2(VI) chain", "gene_name": "COL6A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99828-1", "protein_name": "Calcium and integrin-binding protein 1", "gene_name": "CIB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKE5-1", "protein_name": "TRAF2 and NCK-interacting protein kinase", "gene_name": "TNIK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NP97-1", "protein_name": "Dynein light chain roadblock-type 1", "gene_name": "DYNLRB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33241-1", "protein_name": "Lymphocyte-specific protein 1", "gene_name": "LSP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20618-1", "protein_name": "Proteasome subunit beta type-1", "gene_name": "PSMB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01833-1", "protein_name": "Polymeric immunoglobulin receptor", "gene_name": "PIGR", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49755-1", "protein_name": "Transmembrane emp24 domain-containing protein 10", "gene_name": "TMED10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96KR1-1", "protein_name": "Zinc finger RNA-binding protein", "gene_name": "ZFR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96HP8-1", "protein_name": "Transmembrane protein 176A", "gene_name": "TMEM176A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96PP9-1", "protein_name": "Guanylate-binding protein 4", "gene_name": "GBP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62280-1", "protein_name": "Small ribosomal subunit protein uS17", "gene_name": "RPS11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NZN4-1", "protein_name": "EH domain-containing protein 2", "gene_name": "EHD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H3M7-1", "protein_name": "Thioredoxin-interacting protein", "gene_name": "TXNIP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5A7-1", "protein_name": "NEDD8 ultimate buster 1", "gene_name": "NUB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q00610-1", "protein_name": "Clathrin heavy chain 1", "gene_name": "CLTC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08670-1", "protein_name": "Vimentin", "gene_name": "VIM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P43307-1", "protein_name": "Translocon-associated protein subunit alpha", "gene_name": "SSR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00767-1", "protein_name": "Stearoyl-CoA desaturase", "gene_name": "SCD", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02545-1", "protein_name": "Prelamin-A/C", "gene_name": "LMNA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93062-1", "protein_name": "RNA-binding protein with multiple splicing", "gene_name": "RBPMS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P37023-1", "protein_name": "Activin receptor type-1-like", "gene_name": "ACVRL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15884-1", "protein_name": "Transcription factor 4", "gene_name": "TCF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q63ZY3-1", "protein_name": "KN motif and ankyrin repeat domain-containing protein 2", "gene_name": "KANK2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60506-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein Q", "gene_name": "SYNCRIP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15927-1", "protein_name": "Replication protein A 32 kDa subunit", "gene_name": "RPA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52272-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein M", "gene_name": "HNRNPM", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75891-1", "protein_name": "Cytosolic 10-formyltetrahydrofolate dehydrogenase", "gene_name": "ALDH1L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61968-1", "protein_name": "LIM domain transcription factor LMO4", "gene_name": "LMO4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04075-1", "protein_name": "Fructose-bisphosphate aldolase A", "gene_name": "ALDOA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78527-1", "protein_name": "DNA-dependent protein kinase catalytic subunit", "gene_name": "PRKDC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBF2-1", "protein_name": "Coatomer subunit gamma-2", "gene_name": "COPG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y678-1", "protein_name": "Coatomer subunit gamma-1", "gene_name": "COPG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BV87-1", "protein_name": "Protein CNPPD1", "gene_name": "CNPPD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95715-1", "protein_name": "C-X-C motif chemokine 14", "gene_name": "CXCL14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQK1-1", "protein_name": "Protein phosphatase 1 regulatory subunit 3C", "gene_name": "PPP1R3C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6UVK1-1", "protein_name": "Chondroitin sulfate proteoglycan 4", "gene_name": "CSPG4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14775-1", "protein_name": "Guanine nucleotide-binding protein subunit beta-5", "gene_name": "GNB5", "tax_name": "Human" }, { "uniprot_canonical_ac": "O76080-1", "protein_name": "AN1-type zinc finger protein 5", "gene_name": "ZFAND5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HAW8-1", "protein_name": "UDP-glucuronosyltransferase 1A10", "gene_name": "UGT1A10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14511-1", "protein_name": "Enhancer of filamentation 1", "gene_name": "NEDD9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NBM4-1", "protein_name": "Ubiquitin-associated domain-containing protein 2", "gene_name": "UBAC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78347-1", "protein_name": "General transcription factor II-I", "gene_name": "GTF2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78371-1", "protein_name": "T-complex protein 1 subunit beta", "gene_name": "CCT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4A5-1", "protein_name": "Transformation/transcription domain-associated protein", "gene_name": "TRRAP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92597-1", "protein_name": "Protein NDRG1", "gene_name": "NDRG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92620-1", "protein_name": "Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16", "gene_name": "DHX38", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUP0-1", "protein_name": "EF-hand domain-containing protein D1", "gene_name": "EFHD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35580-1", "protein_name": "Myosin-10", "gene_name": "MYH10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P2P1-1", "protein_name": "Protein NYNRIN", "gene_name": "NYNRIN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15019-1", "protein_name": "Septin-2", "gene_name": "SEPTIN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99541-1", "protein_name": "Perilipin-2", "gene_name": "PLIN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BX97-1", "protein_name": "Plasmalemma vesicle-associated protein", "gene_name": "PLVAP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9ULT8-1", "protein_name": "E3 ubiquitin-protein ligase HECTD1", "gene_name": "HECTD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15347-1", "protein_name": "High mobility group protein B3", "gene_name": "HMGB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "B2RXH8-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein C-like 2", "gene_name": "HNRNPCL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4C2-1", "protein_name": "TRPM8 channel-associated factor 1", "gene_name": "TCAF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01995-1", "protein_name": "Transgelin", "gene_name": "TAGLN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UIL1-1", "protein_name": "Short coiled-coil protein", "gene_name": "SCOC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20062-1", "protein_name": "Transcobalamin-2", "gene_name": "TCN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96JI7-1", "protein_name": "Spatacsin", "gene_name": "SPG11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5BJD5-1", "protein_name": "Transmembrane protein 41B", "gene_name": "TMEM41B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYM9-1", "protein_name": "E3 ubiquitin-protein ligase TRIM22", "gene_name": "TRIM22", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15393-1", "protein_name": "Splicing factor 3B subunit 3", "gene_name": "SF3B3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHE5-1", "protein_name": "N-acetyltransferase 8", "gene_name": "NAT8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00507-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 9Y", "gene_name": "USP9Y", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96IX5-1", "protein_name": "ATP synthase F(0) complex subunit k, mitochondrial", "gene_name": "ATP5MK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15293-1", "protein_name": "Reticulocalbin-1", "gene_name": "RCN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13987-1", "protein_name": "CD59 glycoprotein", "gene_name": "CD59", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75444-2", "protein_name": "Transcription factor Maf", "gene_name": "MAF", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60895-1", "protein_name": "Receptor activity-modifying protein 2", "gene_name": "RAMP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P21333-1", "protein_name": "Filamin-A", "gene_name": "FLNA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6NZI2-1", "protein_name": "Caveolae-associated protein 1", "gene_name": "CAVIN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NV31-1", "protein_name": "U3 small nucleolar ribonucleoprotein protein IMP3", "gene_name": "IMP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NEY8-1", "protein_name": "Periphilin-1", "gene_name": "PPHLN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05787-1", "protein_name": "Keratin, type II cytoskeletal 8", "gene_name": "KRT8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P2H3-1", "protein_name": "Centrosomal protein of 85 kDa", "gene_name": "CEP85", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13639-1", "protein_name": "Elongation factor 2", "gene_name": "EEF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BQ04-1", "protein_name": "RNA-binding protein 4B", "gene_name": "RBM4B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62879-1", "protein_name": "Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2", "gene_name": "GNB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07203-1", "protein_name": "Glutathione peroxidase 1", "gene_name": "GPX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07911-1", "protein_name": "Uromodulin", "gene_name": "UMOD", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBQ7-1", "protein_name": "Glyoxylate reductase/hydroxypyruvate reductase", "gene_name": "GRHPR", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22626-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins A2/B1", "gene_name": "HNRNPA2B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61313-1", "protein_name": "Large ribosomal subunit protein eL15", "gene_name": "RPL15", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95372-1", "protein_name": "Acyl-protein thioesterase 2", "gene_name": "LYPLA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15031-1", "protein_name": "Plexin-B2", "gene_name": "PLXNB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14165-1", "protein_name": "Malectin", "gene_name": "MLEC", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00476-1", "protein_name": "Sodium-dependent phosphate transport protein 4", "gene_name": "SLC17A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00159-1", "protein_name": "Unconventional myosin-Ic", "gene_name": "MYO1C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96SK2-1", "protein_name": "Transmembrane protein 209", "gene_name": "TMEM209", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05067-1", "protein_name": "Amyloid-beta precursor protein", "gene_name": "APP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61289-1", "protein_name": "Proteasome activator complex subunit 3", "gene_name": "PSME3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49815-1", "protein_name": "Tuberin", "gene_name": "TSC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BA8-1", "protein_name": "Cyclic AMP-responsive element-binding protein 3-like protein 1", "gene_name": "CREB3L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00560-1", "protein_name": "Syntenin-1", "gene_name": "SDCBP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63244-1", "protein_name": "Small ribosomal subunit protein RACK1", "gene_name": "RACK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63208-1", "protein_name": "S-phase kinase-associated protein 1", "gene_name": "SKP1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P98160", "url": "https://www.uniprot.org/uniprotkb/P98160" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.17074750", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 147 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Endorepellin in vivo: targeting the tumor vasculature and retarding cancer growth and metabolism.", "journal": "J. Natl. Cancer Inst.", "date": "2006", "authors": "Bix Gregory, Castello Remedios, Burrows Michelle, Zoeller Jason J, Weech Michelle, Iozzo Rex A, Cardi Christopher, Thakur Mathew L, Barker Christopher A, Camphausen Kevin, Iozzo Renato V", "reference": { "type": "PubMed", "id": "17105986", "url": "https://pubmed.ncbi.nlm.nih.gov/17105986" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P98160-1", "protein_name": "Basement membrane-specific heparan sulfate proteoglycan core protein", "gene_name": "HSPG2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P98160", "url": "https://www.uniprot.org/uniprotkb/P98160" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.17105986", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "XT-II, the second isoform of human peptide-O-xylosyltransferase, displays enzymatic activity.", "journal": "The Journal of biological chemistry", "date": "2007", "authors": "Voglmeir J, Voglauer R, Wilson IB", "reference": { "type": "PubMed", "id": "17194707", "url": "https://pubmed.ncbi.nlm.nih.gov/17194707" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P98160-1", "protein_name": "Basement membrane-specific heparan sulfate proteoglycan core protein", "gene_name": "HSPG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75056-1", "protein_name": "Syndecan-3", "gene_name": "SDC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00468-1", "protein_name": "Agrin", "gene_name": "AGRN", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75063-1", "protein_name": "Glycosaminoglycan xylosylkinase", "gene_name": "FAM20B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P21810-1", "protein_name": "Biglycan", "gene_name": "BGN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51654-1", "protein_name": "Glypican-3", "gene_name": "GPC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18827-1", "protein_name": "Syndecan-1", "gene_name": "SDC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P2W7-1", "protein_name": "Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1", "gene_name": "B3GAT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94766-1", "protein_name": "Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 3", "gene_name": "B3GAT3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPZ5-1", "protein_name": "Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 2", "gene_name": "B3GAT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95196-1", "protein_name": "Chondroitin sulfate proteoglycan 5", "gene_name": "CSPG5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31431-1", "protein_name": "Syndecan-4", "gene_name": "SDC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y625-1", "protein_name": "Glypican-6", "gene_name": "GPC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N158-1", "protein_name": "Glypican-2", "gene_name": "GPC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P34741-1", "protein_name": "Syndecan-2", "gene_name": "SDC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6UVK1-1", "protein_name": "Chondroitin sulfate proteoglycan 4", "gene_name": "CSPG4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78333-1", "protein_name": "Glypican-5", "gene_name": "GPC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35052-1", "protein_name": "Glypican-1", "gene_name": "GPC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13611-1", "protein_name": "Versican core protein", "gene_name": "VCAN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96L58-1", "protein_name": "Beta-1,3-galactosyltransferase 6", "gene_name": "B3GALT6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07585-1", "protein_name": "Decorin", "gene_name": "DCN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBV7-1", "protein_name": "Beta-1,4-galactosyltransferase 7", "gene_name": "B4GALT7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96GW7-1", "protein_name": "Brevican core protein", "gene_name": "BCAN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TE99-1", "protein_name": "2-phosphoxylose phosphatase 1", "gene_name": "PXYLP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H1B5-1", "protein_name": "Xylosyltransferase 2", "gene_name": "XYLT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NBZ7-1", "protein_name": "UDP-glucuronic acid decarboxylase 1", "gene_name": "UXS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86Y38-1", "protein_name": "Xylosyltransferase 1", "gene_name": "XYLT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75487-1", "protein_name": "Glypican-4", "gene_name": "GPC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14594-1", "protein_name": "Neurocan core protein", "gene_name": "NCAN", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P98160", "url": "https://www.uniprot.org/uniprotkb/P98160" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.17194707", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 29 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Reduced perlecan in mice results in chondrodysplasia resembling Schwartz-Jampel syndrome.", "journal": "Human molecular genetics", "date": "2007-03-01", "authors": "Rodgers Kathryn D, Sasaki Takako, Aszodi Attila, Jacenko Olena", "reference": { "type": "PubMed", "id": "17213231", "url": "https://pubmed.ncbi.nlm.nih.gov/17213231" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P98160-1", "protein_name": "Basement membrane-specific heparan sulfate proteoglycan core protein", "gene_name": "HSPG2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P98160", "url": "https://www.uniprot.org/uniprotkb/P98160" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "snv": [ { "evidence": [ { "id": "P98160", "database": "BioMuta", "url": "https://hivelab.biochemistry.gwu.edu/biomuta/proteinview/P98160" }, { "id": "rs137853248", "database": "dbSNP", "url": "https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=rs137853248" }, { "id": "rs137853248", "database": "gnomAD", "url": "http://gnomad.broadinstitute.org/awesome?query=rs137853248" }, { "id": "11101850", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/11101850" }, { "id": "17213231", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/17213231" } ], "glycoeffect": [], "start_pos": 1532, "end_pos": 1532, "subjects_tested": "3601", "subjects_positive": "1", "frequency": "0.0", "sequence_org": "C", "sequence_mut": "Y", "comment": "Somatic mutation passed 1 filters: protein-of-interest(glycogene, gag-related).", "chr_id": "1", "chr_pos": "21864874", "ref_nt": "C", "alt_nt": "T", "minor_allelic_frequency": "", "site_lbl": "C1532", "disease": [ { "disease_id": "DOID:9256", "recommended_name": { "id": "DOID:9256", "resource": "Disease Ontology", "url": "https://disease-ontology.org/term/DOID:9256", "name": "colorectal cancer", "description": "A large intestine cancer that is located_in the colon and/or located_in the rectum." }, "synonyms": [ { "id": "MONDO:0005575", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0005575", "name": "colorectal cancer", "description": "A primary or metastatic malignant neoplasm that affects the colon or rectum. Representative examples include carcinoma, lymphoma, and sarcoma." }, { "id": "MONDO:0005575", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0005575", "name": "cancer of colorectum", "description": "" }, { "id": "MONDO:0005575", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0005575", "name": "cancer of large bowel", "description": "" }, { "id": "MONDO:0005575", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0005575", "name": "cancer of large intestine", "description": "" }, { "id": "MONDO:0005575", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0005575", "name": "cancer of the large bowel", "description": "" }, { "id": "MONDO:0005575", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0005575", "name": "colon cancer, advanced, somatic", "description": "" }, { "id": "MONDO:0005575", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0005575", "name": "colon cancer, somatic", "description": "" }, { "id": "MONDO:0005575", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0005575", "name": "colorectal cancer", "description": "" }, { "id": "MONDO:0005575", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0005575", "name": "colorectal cancer with chromosomal instability, somatic", "description": "" }, { "id": "MONDO:0005575", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0005575", "name": "colorectal cancer, autosomal dominant, somatic mutation", "description": "" }, { "id": "MONDO:0005575", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0005575", "name": "colorectal cancer, somatic", "description": "" }, { "id": "MONDO:0005575", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0005575", "name": "colorectal cancer, susceptibility to, autosomal dominant, somatic mutation", "description": "" }, { "id": "MONDO:0005575", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0005575", "name": "colorectum cancer", "description": "" }, { "id": "MONDO:0005575", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0005575", "name": "malignant colorectal neoplasm", "description": "" }, { "id": "MONDO:0005575", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0005575", "name": "malignant colorectal tumor", "description": "" }, { "id": "MONDO:0005575", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0005575", "name": "malignant colorectal tumour", "description": "" }, { "id": "MONDO:0005575", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0005575", "name": "malignant colorectum neoplasm", "description": "" }, { "id": "MONDO:0005575", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0005575", "name": "malignant large bowel neoplasm", "description": "" }, { "id": "MONDO:0005575", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0005575", "name": "malignant large bowel tumor", "description": "" }, { "id": "MONDO:0005575", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0005575", "name": "malignant large bowel tumour", "description": "" }, { "id": "MONDO:0005575", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0005575", "name": "malignant large intestine neoplasm", "description": "" }, { "id": "MONDO:0005575", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0005575", "name": "malignant large intestine tumor", "description": "" }, { "id": "MONDO:0005575", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0005575", "name": "malignant large intestine tumour", "description": "" }, { "id": "MONDO:0005575", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0005575", "name": "malignant neoplasm of colorectum", "description": "" }, { "id": "MONDO:0005575", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0005575", "name": "malignant neoplasm of large bowel", "description": "" }, { "id": "MONDO:0005575", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0005575", "name": "malignant neoplasm of large intestine", "description": "" }, { "id": "MONDO:0005575", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0005575", "name": "malignant neoplasm of the large bowel", "description": "" }, { "id": "MONDO:0005575", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0005575", "name": "malignant neoplasm of the large intestine", "description": "" }, { "id": "MONDO:0005575", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0005575", "name": "malignant tumor of large bowel", "description": "" }, { "id": "MONDO:0005575", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0005575", "name": "malignant tumor of large intestine", "description": "" }, { "id": "MONDO:0005575", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0005575", "name": "malignant tumor of the large bowel", "description": "" }, { "id": "MONDO:0005575", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0005575", "name": "malignant tumor of the large intestine", "description": "" }, { "id": "MONDO:0005575", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0005575", "name": "malignant tumour of large bowel", "description": "" }, { "id": "MONDO:0005575", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0005575", "name": "malignant tumour of large intestine", "description": "" }, { "id": "MONDO:0005575", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0005575", "name": "malignant tumour of the large bowel", "description": "" }, { "id": "MONDO:0005575", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0005575", "name": "malignant tumour of the large intestine", "description": "" }, { "id": "MONDO:0005575", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0005575", "name": "CRC", "description": "" }, { "id": "MIM:114500", "resource": "MIM", "url": "https://www.omim.org/entry/114500", "name": "Colorectal cancer", "description": "Colorectal cancer" } ], "unlinked_id_list": [], "evidence": [ { "id": "9256", "database": "AGR", "url": "https://www.alliancegenome.org/disease/DOID:9256" } ] }, { "disease_id": "DOID:0090005", "recommended_name": { "id": "DOID:0090005", "resource": "Disease Ontology", "url": "https://disease-ontology.org/term/DOID:0090005", "name": "Schwartz-Jampel syndrome 1", "description": "A syndrome characterized by neuromyotonia and chondrodysplasia that has_material_basis_in hypomorphic mutations in the HSPG2 gene on chromosome 1p36." }, "synonyms": [ { "id": "DOID:0090005", "resource": "Disease Ontology", "url": "https://disease-ontology.org/term/DOID:0090005", "name": "Aberfeld syndrome", "description": "" }, { "id": "DOID:0090005", "resource": "Disease Ontology", "url": "https://disease-ontology.org/term/DOID:0090005", "name": "Burton skeletal dysplasia", "description": "" }, { "id": "DOID:0090005", "resource": "Disease Ontology", "url": "https://disease-ontology.org/term/DOID:0090005", "name": "Burton syndrome", "description": "" }, { "id": "DOID:0090005", "resource": "Disease Ontology", "url": "https://disease-ontology.org/term/DOID:0090005", "name": "Catel-Hempel syndrome", "description": "" }, { "id": "DOID:0090005", "resource": "Disease Ontology", "url": "https://disease-ontology.org/term/DOID:0090005", "name": "Schwartz-Jampel syndrome type 1", "description": "" }, { "id": "DOID:0090005", "resource": "Disease Ontology", "url": "https://disease-ontology.org/term/DOID:0090005", "name": "Schwartz-Jampel-Aberfeld syndrome", "description": "" }, { "id": "DOID:0090005", "resource": "Disease Ontology", "url": "https://disease-ontology.org/term/DOID:0090005", "name": "Catel-Hempel type dysostosis enchondralis metaepiphysaria", "description": "" }, { "id": "DOID:0090005", "resource": "Disease Ontology", "url": "https://disease-ontology.org/term/DOID:0090005", "name": "myotonic chondrodystrophy", "description": "" }, { "id": "DOID:0090005", "resource": "Disease Ontology", "url": "https://disease-ontology.org/term/DOID:0090005", "name": "osteochondromuscular dystrophy", "description": "" }, { "id": "DOID:0090005", "resource": "Disease Ontology", "url": "https://disease-ontology.org/term/DOID:0090005", "name": "myotonic myopathy, dwarfism, chondrodystrophy, ocular and facial anomalies", "description": "" }, { "id": "MONDO:0100435", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0100435", "name": "Schwartz-Jampel syndrome type 1", "description": "" }, { "id": "MONDO:0100435", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0100435", "name": "SJA syndrome", "description": "" }, { "id": "MONDO:0100435", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0100435", "name": "SJS1", "description": "" }, { "id": "MONDO:0100435", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0100435", "name": "Schwartz-Jampel syndrome type 1", "description": "" }, { "id": "MONDO:0100435", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0100435", "name": "Schwartz-Jampel syndrome, type 1", "description": "" }, { "id": "MIM:255800", "resource": "MIM", "url": "https://www.omim.org/entry/255800", "name": "Schwartz-Jampel syndrome", "description": "Schwartz-Jampel syndrome" } ], "unlinked_id_list": [], "evidence": [ { "id": "255800", "database": "MIM", "url": "https://www.omim.org/entry/255800" }, { "id": "0090005", "database": "AGR", "url": "https://www.alliancegenome.org/disease/DOID:0090005" } ] } ], "keywords": [ "biomuta", "somatic", "cancer", "disease", "ebi", "germline" ], "uniprot_canonical_ac": "P98160-1" } ], "record_id": "pubmed.17213231", "abstract": "", "glycosylation": [], "mutagenesis": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Human basement membrane heparan sulfate proteoglycan core protein: a 467-kD protein containing multiple domains resembling elements of the low density lipoprotein receptor, laminin, neural cell adhesion molecules, and epidermal growth factor.", "journal": "J. Cell Biol.", "date": "1992", "authors": "Kallunki P, Tryggvason K", "reference": { "type": "PubMed", "id": "1730768", "url": "https://pubmed.ncbi.nlm.nih.gov/1730768" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P98160-1", "protein_name": "Basement membrane-specific heparan sulfate proteoglycan core protein", "gene_name": "HSPG2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P98160", "url": "https://www.uniprot.org/uniprotkb/P98160" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.1730768", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Engagement of collagen-binding integrins promotes matrix metalloproteinase-9-dependent E-cadherin ectodomain shedding in ovarian carcinoma cells.", "journal": "Cancer research", "date": "2007", "authors": "Symowicz J, Adley BP, Gleason KJ, Johnson JJ, Ghosh S, Fishman DA, Hudson LG, Stack MS", "reference": { "type": "PubMed", "id": "17332331", "url": "https://pubmed.ncbi.nlm.nih.gov/17332331" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P98160-1", "protein_name": "Basement membrane-specific heparan sulfate proteoglycan core protein", "gene_name": "HSPG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15502-3", "protein_name": "Elastin", "gene_name": "ELN", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43897-1", "protein_name": "Tolloid-like protein 1", "gene_name": "TLL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13444-1", "protein_name": "Disintegrin and metalloproteinase domain-containing protein 15", "gene_name": "ADAM15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92542-1", "protein_name": "Nicastrin", "gene_name": "NCSTN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02751-15", "protein_name": "Fibronectin", "gene_name": "FN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04632-1", "protein_name": "Calpain small subunit 1", "gene_name": "CAPNS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08246-1", "protein_name": "Neutrophil elastase", "gene_name": "ELANE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92743-1", "protein_name": "Serine protease HTRA1", "gene_name": "HTRA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBM4-1", "protein_name": "Opticin", "gene_name": "OPTC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16112-1", "protein_name": "Aggrecan core protein", "gene_name": "ACAN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P03956-1", "protein_name": "Interstitial collagenase", "gene_name": "MMP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39900-1", "protein_name": "Macrophage metalloelastase", "gene_name": "MMP12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14543-1", "protein_name": "Nidogen-1", "gene_name": "NID1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWY4-1", "protein_name": "Signal peptide, CUB and EGF-like domain-containing protein 1", "gene_name": "SCUBE1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35613-1", "protein_name": "Basigin", "gene_name": "BSG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50281-1", "protein_name": "Matrix metalloproteinase-14", "gene_name": "MMP14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TE57-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 16", "gene_name": "ADAMTS16", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNA0-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 5", "gene_name": "ADAMTS5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6MZZ7-1", "protein_name": "Calpain-13", "gene_name": "CAPN13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07711-1", "protein_name": "Procathepsin L", "gene_name": "CTSL", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75808-1", "protein_name": "Calpain-15", "gene_name": "CAPN15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16070-1", "protein_name": "CD44 antigen", "gene_name": "CD44", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08311-1", "protein_name": "Cathepsin G", "gene_name": "CTSG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10451-1", "protein_name": "Osteopontin", "gene_name": "SPP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25774-1", "protein_name": "Cathepsin S", "gene_name": "CTSS", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15484-1", "protein_name": "Calpain-5", "gene_name": "CAPN5", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60911-1", "protein_name": "Cathepsin L2", "gene_name": "CTSV", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07942-1", "protein_name": "Laminin subunit beta-1", "gene_name": "LAMB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49862-1", "protein_name": "Kallikrein-7", "gene_name": "KLK7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13753-1", "protein_name": "Laminin subunit gamma-2", "gene_name": "LAMC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11047-1", "protein_name": "Laminin subunit gamma-1", "gene_name": "LAMC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P45452-1", "protein_name": "Collagenase 3", "gene_name": "MMP13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24347-1", "protein_name": "Stromelysin-3", "gene_name": "MMP11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09238-1", "protein_name": "Stromelysin-2", "gene_name": "MMP10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51511-1", "protein_name": "Matrix metalloproteinase-15", "gene_name": "MMP15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96L46-1", "protein_name": "Calpain small subunit 2", "gene_name": "CAPNS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13751-1", "protein_name": "Laminin subunit beta-3", "gene_name": "LAMB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16787-2", "protein_name": "Laminin subunit alpha-3", "gene_name": "LAMA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15230-1", "protein_name": "Laminin subunit alpha-5", "gene_name": "LAMA5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09237-1", "protein_name": "Matrilysin", "gene_name": "MMP7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6L7-1", "protein_name": "Tolloid-like protein 2", "gene_name": "TLL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42574-1", "protein_name": "Caspase-3", "gene_name": "CASP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00747-1", "protein_name": "Plasminogen", "gene_name": "PLG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14780-1", "protein_name": "Matrix metalloproteinase-9", "gene_name": "MMP9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07585-1", "protein_name": "Decorin", "gene_name": "DCN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6W3-1", "protein_name": "Calpain-7", "gene_name": "CAPN7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13497-1", "protein_name": "Bone morphogenetic protein 1", "gene_name": "BMP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "A6NHC0-1", "protein_name": "Calpain-8", "gene_name": "CAPN8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14815-1", "protein_name": "Calpain-9", "gene_name": "CAPN9", "tax_name": "Human" }, { "uniprot_canonical_ac": "A8MX76-1", "protein_name": "Calpain-14", "gene_name": "CAPN14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12830-1", "protein_name": "Cadherin-1", "gene_name": "CDH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZSI9-1", "protein_name": "Calpain-12", "gene_name": "CAPN12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17655-1", "protein_name": "Calpain-2 catalytic subunit", "gene_name": "CAPN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6Q1-1", "protein_name": "Calpain-6", "gene_name": "CAPN6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08253-1", "protein_name": "72 kDa type IV collagenase", "gene_name": "MMP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IX30-1", "protein_name": "Signal peptide, CUB and EGF-like domain-containing protein 3", "gene_name": "SCUBE3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96GW7-1", "protein_name": "Brevican core protein", "gene_name": "BCAN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TE60-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 18", "gene_name": "ADAMTS18", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75173-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 4", "gene_name": "ADAMTS4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P2N4-3", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 9", "gene_name": "ADAMTS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHI8-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 1", "gene_name": "ADAMTS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UP79-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 8", "gene_name": "ADAMTS8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20807-1", "protein_name": "Calpain-3", "gene_name": "CAPN3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07384-1", "protein_name": "Calpain-1 catalytic subunit", "gene_name": "CAPN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HC96-1", "protein_name": "Calpain-10", "gene_name": "CAPN10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P43235-1", "protein_name": "Cathepsin K", "gene_name": "CTSK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UMQ6-1", "protein_name": "Calpain-11", "gene_name": "CAPN11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35555-1", "protein_name": "Fibrillin-1", "gene_name": "FBN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35556-1", "protein_name": "Fibrillin-2", "gene_name": "FBN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q75N90-1", "protein_name": "Fibrillin-3", "gene_name": "FBN3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20810-1", "protein_name": "Calpastatin", "gene_name": "CAST", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08254-1", "protein_name": "Stromelysin-1", "gene_name": "MMP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22894-1", "protein_name": "Neutrophil collagenase", "gene_name": "MMP8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99542-1", "protein_name": "Matrix metalloproteinase-19", "gene_name": "MMP19", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60882-1", "protein_name": "Matrix metalloproteinase-20", "gene_name": "MMP20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IU80-4", "protein_name": "Transmembrane protease serine 6", "gene_name": "TMPRSS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49768-1", "protein_name": "Presenilin-1", "gene_name": "PSEN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14672-1", "protein_name": "Disintegrin and metalloproteinase domain-containing protein 10", "gene_name": "ADAM10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01023-1", "protein_name": "Alpha-2-macroglobulin", "gene_name": "A2M", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78325-1", "protein_name": "Disintegrin and metalloproteinase domain-containing protein 8", "gene_name": "ADAM8", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P98160", "url": "https://www.uniprot.org/uniprotkb/P98160" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.17332331", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 81 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Critical residues of alphaX I-domain recognizing fibrinogen central domain.", "journal": "Biochemical and biophysical research communications", "date": "2007", "authors": "Lee JH, Choi J, Nham SU", "reference": { "type": "PubMed", "id": "17339034", "url": "https://pubmed.ncbi.nlm.nih.gov/17339034" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P98160-1", "protein_name": "Basement membrane-specific heparan sulfate proteoglycan core protein", "gene_name": "HSPG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51884-1", "protein_name": "Lumican", "gene_name": "LUM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02452-1", "protein_name": "Collagen alpha-1(I) chain", "gene_name": "COL1A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18084-1", "protein_name": "Integrin beta-5", "gene_name": "ITGB5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02671-1", "protein_name": "Fibrinogen alpha chain", "gene_name": "FGA", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00468-1", "protein_name": "Agrin", "gene_name": "AGRN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02751-15", "protein_name": "Fibronectin", "gene_name": "FN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08722-1", "protein_name": "Leukocyte surface antigen CD47", "gene_name": "CD47", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53420-1", "protein_name": "Collagen alpha-4(IV) chain", "gene_name": "COL4A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02679-1", "protein_name": "Fibrinogen gamma chain", "gene_name": "FGG", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86Y22-1", "protein_name": "Collagen alpha-1(XXIII) chain", "gene_name": "COL23A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20701-1", "protein_name": "Integrin alpha-L", "gene_name": "ITGAL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05362-1", "protein_name": "Intercellular adhesion molecule 1", "gene_name": "ICAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y624-1", "protein_name": "Junctional adhesion molecule A", "gene_name": "F11R", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35613-1", "protein_name": "Basigin", "gene_name": "BSG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P21815-1", "protein_name": "Integrin-binding sialoprotein", "gene_name": "IBSP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49747-1", "protein_name": "Cartilage oligomeric matrix protein", "gene_name": "COMP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04275-1", "protein_name": "von Willebrand factor", "gene_name": "VWF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07996-1", "protein_name": "Thrombospondin-1", "gene_name": "THBS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16070-1", "protein_name": "CD44 antigen", "gene_name": "CD44", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10451-1", "protein_name": "Osteopontin", "gene_name": "SPP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12110-1", "protein_name": "Collagen alpha-2(VI) chain", "gene_name": "COL6A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14031-1", "protein_name": "Collagen alpha-6(IV) chain", "gene_name": "COL4A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20908-1", "protein_name": "Collagen alpha-1(V) chain", "gene_name": "COL5A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02462-1", "protein_name": "Collagen alpha-1(IV) chain", "gene_name": "COL4A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27658-1", "protein_name": "Collagen alpha-1(VIII) chain", "gene_name": "COL8A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08572-1", "protein_name": "Collagen alpha-2(IV) chain", "gene_name": "COL4A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25067-1", "protein_name": "Collagen alpha-2(VIII) chain", "gene_name": "COL8A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20849-1", "protein_name": "Collagen alpha-1(IX) chain", "gene_name": "COL9A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25940-1", "protein_name": "Collagen alpha-3(V) chain", "gene_name": "COL5A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01955-1", "protein_name": "Collagen alpha-3(IV) chain", "gene_name": "COL4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16284-1", "protein_name": "Platelet endothelial cell adhesion molecule", "gene_name": "PECAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35968-1", "protein_name": "Vascular endothelial growth factor receptor 2", "gene_name": "KDR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13683-1", "protein_name": "Integrin alpha-7", "gene_name": "ITGA7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18564-1", "protein_name": "Integrin beta-6", "gene_name": "ITGB6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11215-1", "protein_name": "Integrin alpha-M", "gene_name": "ITGAM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26006-2", "protein_name": "Integrin alpha-3", "gene_name": "ITGA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08514-1", "protein_name": "Integrin alpha-IIb", "gene_name": "ITGA2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38570-1", "protein_name": "Integrin alpha-E", "gene_name": "ITGAE", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75578-1", "protein_name": "Integrin alpha-10", "gene_name": "ITGA10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06756-1", "protein_name": "Integrin alpha-V", "gene_name": "ITGAV", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53708-1", "protein_name": "Integrin alpha-8", "gene_name": "ITGA8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13349-1", "protein_name": "Integrin alpha-D", "gene_name": "ITGAD", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKX5-1", "protein_name": "Integrin alpha-11", "gene_name": "ITGA11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08648-1", "protein_name": "Integrin alpha-5", "gene_name": "ITGA5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13612-1", "protein_name": "Integrin alpha-4", "gene_name": "ITGA4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05556-1", "protein_name": "Integrin beta-1", "gene_name": "ITGB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02461-1", "protein_name": "Collagen alpha-1(III) chain", "gene_name": "COL3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07092-1", "protein_name": "Collagen alpha-1(XVI) chain", "gene_name": "COL16A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29400-1", "protein_name": "Collagen alpha-5(IV) chain", "gene_name": "COL4A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14055-1", "protein_name": "Collagen alpha-2(IX) chain", "gene_name": "COL9A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "A8TX70-1", "protein_name": "Collagen alpha-5(VI) chain", "gene_name": "COL6A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05997-1", "protein_name": "Collagen alpha-2(V) chain", "gene_name": "COL5A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "A6NMZ7-1", "protein_name": "Collagen alpha-6(VI) chain", "gene_name": "COL6A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12111-1", "protein_name": "Collagen alpha-3(VI) chain", "gene_name": "COL6A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5TAT6-1", "protein_name": "Collagen alpha-1(XIII) chain", "gene_name": "COL13A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08123-1", "protein_name": "Collagen alpha-2(I) chain", "gene_name": "COL1A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12109-1", "protein_name": "Collagen alpha-1(VI) chain", "gene_name": "COL6A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02458-2", "protein_name": "Collagen alpha-1(II) chain", "gene_name": "COL2A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02388-1", "protein_name": "Collagen alpha-1(VII) chain", "gene_name": "COL7A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14050-1", "protein_name": "Collagen alpha-3(IX) chain", "gene_name": "COL9A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02675-1", "protein_name": "Fibrinogen beta chain", "gene_name": "FGB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26010-1", "protein_name": "Integrin beta-7", "gene_name": "ITGB7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05106-1", "protein_name": "Integrin beta-3", "gene_name": "ITGB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q03692-1", "protein_name": "Collagen alpha-1(X) chain", "gene_name": "COL10A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12830-1", "protein_name": "Cadherin-1", "gene_name": "CDH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04004-1", "protein_name": "Vitronectin", "gene_name": "VTN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23229-1", "protein_name": "Integrin alpha-6", "gene_name": "ITGA6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14773-1", "protein_name": "Intercellular adhesion molecule 4", "gene_name": "ICAM4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13797-1", "protein_name": "Integrin alpha-9", "gene_name": "ITGA9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32942-1", "protein_name": "Intercellular adhesion molecule 3", "gene_name": "ICAM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UMF0-1", "protein_name": "Intercellular adhesion molecule 5", "gene_name": "ICAM5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20702-1", "protein_name": "Integrin alpha-X", "gene_name": "ITGAX", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BX67-1", "protein_name": "Junctional adhesion molecule C", "gene_name": "JAM3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17301-1", "protein_name": "Integrin alpha-2", "gene_name": "ITGA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57087-1", "protein_name": "Junctional adhesion molecule B", "gene_name": "JAM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26012-1", "protein_name": "Integrin beta-8", "gene_name": "ITGB8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P56199-1", "protein_name": "Integrin alpha-1", "gene_name": "ITGA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19320-1", "protein_name": "Vascular cell adhesion protein 1", "gene_name": "VCAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35555-1", "protein_name": "Fibrillin-1", "gene_name": "FBN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13598-1", "protein_name": "Intercellular adhesion molecule 2", "gene_name": "ICAM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24821-1", "protein_name": "Tenascin", "gene_name": "TNC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39060-3", "protein_name": "Collagen alpha-1(XVIII) chain", "gene_name": "COL18A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05107-1", "protein_name": "Integrin beta-2", "gene_name": "ITGB2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P98160", "url": "https://www.uniprot.org/uniprotkb/P98160" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.17339034", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 84 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Kallikrein 7 enhances pancreatic cancer cell invasion by shedding E-cadherin.", "journal": "Cancer", "date": "2007", "authors": "Johnson SK, Ramani VC, Hennings L, Haun RS", "reference": { "type": "PubMed", "id": "17354228", "url": "https://pubmed.ncbi.nlm.nih.gov/17354228" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P98160-1", "protein_name": "Basement membrane-specific heparan sulfate proteoglycan core protein", "gene_name": "HSPG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15502-3", "protein_name": "Elastin", "gene_name": "ELN", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43897-1", "protein_name": "Tolloid-like protein 1", "gene_name": "TLL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13444-1", "protein_name": "Disintegrin and metalloproteinase domain-containing protein 15", "gene_name": "ADAM15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92542-1", "protein_name": "Nicastrin", "gene_name": "NCSTN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02751-15", "protein_name": "Fibronectin", "gene_name": "FN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04632-1", "protein_name": "Calpain small subunit 1", "gene_name": "CAPNS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08246-1", "protein_name": "Neutrophil elastase", "gene_name": "ELANE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92743-1", "protein_name": "Serine protease HTRA1", "gene_name": "HTRA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBM4-1", "protein_name": "Opticin", "gene_name": "OPTC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16112-1", "protein_name": "Aggrecan core protein", "gene_name": "ACAN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P03956-1", "protein_name": "Interstitial collagenase", "gene_name": "MMP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39900-1", "protein_name": "Macrophage metalloelastase", "gene_name": "MMP12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14543-1", "protein_name": "Nidogen-1", "gene_name": "NID1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWY4-1", "protein_name": "Signal peptide, CUB and EGF-like domain-containing protein 1", "gene_name": "SCUBE1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35613-1", "protein_name": "Basigin", "gene_name": "BSG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50281-1", "protein_name": "Matrix metalloproteinase-14", "gene_name": "MMP14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TE57-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 16", "gene_name": "ADAMTS16", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNA0-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 5", "gene_name": "ADAMTS5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6MZZ7-1", "protein_name": "Calpain-13", "gene_name": "CAPN13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07711-1", "protein_name": "Procathepsin L", "gene_name": "CTSL", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75808-1", "protein_name": "Calpain-15", "gene_name": "CAPN15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16070-1", "protein_name": "CD44 antigen", "gene_name": "CD44", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08311-1", "protein_name": "Cathepsin G", "gene_name": "CTSG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10451-1", "protein_name": "Osteopontin", "gene_name": "SPP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25774-1", "protein_name": "Cathepsin S", "gene_name": "CTSS", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15484-1", "protein_name": "Calpain-5", "gene_name": "CAPN5", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60911-1", "protein_name": "Cathepsin L2", "gene_name": "CTSV", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07942-1", "protein_name": "Laminin subunit beta-1", "gene_name": "LAMB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49862-1", "protein_name": "Kallikrein-7", "gene_name": "KLK7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13753-1", "protein_name": "Laminin subunit gamma-2", "gene_name": "LAMC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11047-1", "protein_name": "Laminin subunit gamma-1", "gene_name": "LAMC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P45452-1", "protein_name": "Collagenase 3", "gene_name": "MMP13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24347-1", "protein_name": "Stromelysin-3", "gene_name": "MMP11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09238-1", "protein_name": "Stromelysin-2", "gene_name": "MMP10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51511-1", "protein_name": "Matrix metalloproteinase-15", "gene_name": "MMP15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96L46-1", "protein_name": "Calpain small subunit 2", "gene_name": "CAPNS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13751-1", "protein_name": "Laminin subunit beta-3", "gene_name": "LAMB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16787-2", "protein_name": "Laminin subunit alpha-3", "gene_name": "LAMA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15230-1", "protein_name": "Laminin subunit alpha-5", "gene_name": "LAMA5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09237-1", "protein_name": "Matrilysin", "gene_name": "MMP7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6L7-1", "protein_name": "Tolloid-like protein 2", "gene_name": "TLL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42574-1", "protein_name": "Caspase-3", "gene_name": "CASP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00747-1", "protein_name": "Plasminogen", "gene_name": "PLG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14780-1", "protein_name": "Matrix metalloproteinase-9", "gene_name": "MMP9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07585-1", "protein_name": "Decorin", "gene_name": "DCN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6W3-1", "protein_name": "Calpain-7", "gene_name": "CAPN7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13497-1", "protein_name": "Bone morphogenetic protein 1", "gene_name": "BMP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "A6NHC0-1", "protein_name": "Calpain-8", "gene_name": "CAPN8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14815-1", "protein_name": "Calpain-9", "gene_name": "CAPN9", "tax_name": "Human" }, { "uniprot_canonical_ac": "A8MX76-1", "protein_name": "Calpain-14", "gene_name": "CAPN14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12830-1", "protein_name": "Cadherin-1", "gene_name": "CDH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZSI9-1", "protein_name": "Calpain-12", "gene_name": "CAPN12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17655-1", "protein_name": "Calpain-2 catalytic subunit", "gene_name": "CAPN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6Q1-1", "protein_name": "Calpain-6", "gene_name": "CAPN6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08253-1", "protein_name": "72 kDa type IV collagenase", "gene_name": "MMP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IX30-1", "protein_name": "Signal peptide, CUB and EGF-like domain-containing protein 3", "gene_name": "SCUBE3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96GW7-1", "protein_name": "Brevican core protein", "gene_name": "BCAN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TE60-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 18", "gene_name": "ADAMTS18", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75173-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 4", "gene_name": "ADAMTS4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P2N4-3", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 9", "gene_name": "ADAMTS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHI8-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 1", "gene_name": "ADAMTS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UP79-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 8", "gene_name": "ADAMTS8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20807-1", "protein_name": "Calpain-3", "gene_name": "CAPN3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07384-1", "protein_name": "Calpain-1 catalytic subunit", "gene_name": "CAPN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HC96-1", "protein_name": "Calpain-10", "gene_name": "CAPN10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P43235-1", "protein_name": "Cathepsin K", "gene_name": "CTSK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UMQ6-1", "protein_name": "Calpain-11", "gene_name": "CAPN11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35555-1", "protein_name": "Fibrillin-1", "gene_name": "FBN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35556-1", "protein_name": "Fibrillin-2", "gene_name": "FBN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q75N90-1", "protein_name": "Fibrillin-3", "gene_name": "FBN3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20810-1", "protein_name": "Calpastatin", "gene_name": "CAST", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08254-1", "protein_name": "Stromelysin-1", "gene_name": "MMP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22894-1", "protein_name": "Neutrophil collagenase", "gene_name": "MMP8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99542-1", "protein_name": "Matrix metalloproteinase-19", "gene_name": "MMP19", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60882-1", "protein_name": "Matrix metalloproteinase-20", "gene_name": "MMP20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IU80-4", "protein_name": "Transmembrane protease serine 6", "gene_name": "TMPRSS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49768-1", "protein_name": "Presenilin-1", "gene_name": "PSEN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14672-1", "protein_name": "Disintegrin and metalloproteinase domain-containing protein 10", "gene_name": "ADAM10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01023-1", "protein_name": "Alpha-2-macroglobulin", "gene_name": "A2M", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78325-1", "protein_name": "Disintegrin and metalloproteinase domain-containing protein 8", "gene_name": "ADAM8", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P98160", "url": "https://www.uniprot.org/uniprotkb/P98160" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.17354228", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 81 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A reversible form of lysine acetylation in the ER and Golgi lumen controls the molecular stabilization of BACE1.", "journal": "The Biochemical journal", "date": "2007", "authors": "Costantini C, Ko MH, Jonas MC, Puglielli L", "reference": { "type": "PubMed", "id": "17425515", "url": "https://pubmed.ncbi.nlm.nih.gov/17425515" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P98160-1", "protein_name": "Basement membrane-specific heparan sulfate proteoglycan core protein", "gene_name": "HSPG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61626-1", "protein_name": "Lysozyme C", "gene_name": "LYZ", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0DJI8-1", "protein_name": "Serum amyloid A-1 protein", "gene_name": "SAA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04279-1", "protein_name": "Semenogelin-1", "gene_name": "SEMG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95858-1", "protein_name": "Tetraspanin-15", "gene_name": "TSPAN15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02788-1", "protein_name": "Lactotransferrin", "gene_name": "LTF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02671-1", "protein_name": "Fibrinogen alpha chain", "gene_name": "FGA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92542-1", "protein_name": "Nicastrin", "gene_name": "NCSTN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BI3-1", "protein_name": "Gamma-secretase subunit APH-1A", "gene_name": "APH1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14933-1", "protein_name": "Ubiquitin/ISG15-conjugating enzyme E2 L6", "gene_name": "UBE2L6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09958-1", "protein_name": "Furin", "gene_name": "FURIN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0C0S5-1", "protein_name": "Histone H2A.Z", "gene_name": "H2AZ1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NZ42-1", "protein_name": "Gamma-secretase subunit PEN-2", "gene_name": "PSENEN", "tax_name": "Human" }, { "uniprot_canonical_ac": "A1E959-1", "protein_name": "Odontogenic ameloblast-associated protein", "gene_name": "ODAM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10997-1", "protein_name": "Islet amyloid polypeptide", "gene_name": "IAPP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02743-1", "protein_name": "Serum amyloid P-component", "gene_name": "APCS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01236-1", "protein_name": "Prolactin", "gene_name": "PRL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6H5-1", "protein_name": "Synphilin-1", "gene_name": "SNCAIP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92673-1", "protein_name": "Sortilin-related receptor", "gene_name": "SORL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84243-1", "protein_name": "Histone H3.3", "gene_name": "H3-3A; H3-3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15582-1", "protein_name": "Transforming growth factor-beta-induced protein ig-h3", "gene_name": "TGFBI", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02649-1", "protein_name": "Apolipoprotein E", "gene_name": "APOE", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01258-1", "protein_name": "Calcitonin", "gene_name": "CALCA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UJY5-1", "protein_name": "ADP-ribosylation factor-binding protein GGA1", "gene_name": "GGA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05937-1", "protein_name": "Calbindin", "gene_name": "CALB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02766-1", "protein_name": "Transthyretin", "gene_name": "TTR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y287-1", "protein_name": "Integral membrane protein 2B", "gene_name": "ITM2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43255-1", "protein_name": "E3 ubiquitin-protein ligase SIAH2", "gene_name": "SIAH2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62079-1", "protein_name": "Tetraspanin-5", "gene_name": "TSPAN5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86UF1-1", "protein_name": "Tetraspanin-33", "gene_name": "TSPAN33", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62805-1", "protein_name": "Histone H4", "gene_name": "H4C11; H4C12; H4C13; H4C14; H4C15; H4C16; H4C1; H4C2; H4C3; H4C4; H4C5; H4C6; H4C8; H4C9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68431-1", "protein_name": "Histone H3.1", "gene_name": "H3C10; H3C11; H3C12; H3C1; H3C2; H3C3; H3C4; H3C6; H3C7; H3C8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61769-1", "protein_name": "Beta-2-microglobulin", "gene_name": "B2M", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01160-1", "protein_name": "Natriuretic peptides A", "gene_name": "NPPA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06727-1", "protein_name": "Apolipoprotein A-IV", "gene_name": "APOA4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WW43-1", "protein_name": "Gamma-secretase subunit APH-1B", "gene_name": "APH1B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16778-1", "protein_name": "Histone H2B type 2-E", "gene_name": "H2BC21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62807-1", "protein_name": "Histone H2B type 1-C/E/F/G/I", "gene_name": "H2BC10; H2BC4; H2BC6; H2BC7; H2BC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06396-1", "protein_name": "Gelsolin", "gene_name": "GSN", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60260-1", "protein_name": "E3 ubiquitin-protein ligase parkin", "gene_name": "PRKN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01034-1", "protein_name": "Cystatin-C", "gene_name": "CST3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NZ52-1", "protein_name": "ADP-ribosylation factor-binding protein GGA3", "gene_name": "GGA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71DI3-1", "protein_name": "Histone H3.2", "gene_name": "H3C13; H3C14; H3C15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UJY4-1", "protein_name": "ADP-ribosylation factor-binding protein GGA2", "gene_name": "GGA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16104-1", "protein_name": "Histone H2AX", "gene_name": "H2AX", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33778-1", "protein_name": "Histone H2B type 1-B", "gene_name": "H2BC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P58876-1", "protein_name": "Histone H2B type 1-D", "gene_name": "H2BC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A08-1", "protein_name": "Histone H2B type 1-A", "gene_name": "H2BC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23527-1", "protein_name": "Histone H2B type 1-O", "gene_name": "H2BC17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0C5Y9-1", "protein_name": "Histone H2A-Bbd type 1", "gene_name": "H2AB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93008-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 9X", "gene_name": "USP9X", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60814-1", "protein_name": "Histone H2B type 1-K", "gene_name": "H2BC12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93077-1", "protein_name": "Histone H2A type 1-C", "gene_name": "H2AC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93079-1", "protein_name": "Histone H2B type 1-H", "gene_name": "H2BC9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99879-1", "protein_name": "Histone H2B type 1-M", "gene_name": "H2BC14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NG11-1", "protein_name": "Tetraspanin-14", "gene_name": "TSPAN14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHE5-1", "protein_name": "N-acetyltransferase 8", "gene_name": "NAT8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHF3-1", "protein_name": "N-acetyltransferase 8B", "gene_name": "NAT8B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P56817-1", "protein_name": "Beta-secretase 1", "gene_name": "BACE1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG47-1", "protein_name": "Polyubiquitin-B", "gene_name": "UBB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01308-1", "protein_name": "Insulin", "gene_name": "INS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04908-1", "protein_name": "Histone H2A type 1-B/E", "gene_name": "H2AC4; H2AC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06899-1", "protein_name": "Histone H2B type 1-J", "gene_name": "H2BC11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20671-1", "protein_name": "Histone H2A type 1-D", "gene_name": "H2AC7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57053-1", "protein_name": "Histone H2B type F-S", "gene_name": "H2BC12L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16777-1", "protein_name": "Histone H2A type 2-C", "gene_name": "H2AC20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6FI13-1", "protein_name": "Histone H2A type 2-A", "gene_name": "H2AC18; H2AC19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N257-1", "protein_name": "Histone H2B type 3-B", "gene_name": "H2BC26", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99877-1", "protein_name": "Histone H2B type 1-N", "gene_name": "H2BC15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99878-1", "protein_name": "Histone H2A type 1-J", "gene_name": "H2AC14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99880-1", "protein_name": "Histone H2B type 1-L", "gene_name": "H2BC13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08431-1", "protein_name": "Lactadherin", "gene_name": "MFGE8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05067-1", "protein_name": "Amyloid-beta precursor protein", "gene_name": "APP", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14672-1", "protein_name": "Disintegrin and metalloproteinase domain-containing protein 10", "gene_name": "ADAM10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02647-1", "protein_name": "Apolipoprotein A-I", "gene_name": "APOA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IUQ4-1", "protein_name": "E3 ubiquitin-protein ligase SIAH1", "gene_name": "SIAH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG48-1", "protein_name": "Polyubiquitin-C", "gene_name": "UBC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P37840-1", "protein_name": "Alpha-synuclein", "gene_name": "SNCA", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P98160", "url": "https://www.uniprot.org/uniprotkb/P98160" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.17425515", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 80 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Influence of extracellular monovalent cations on pore and gating properties of P2X7 receptor-operated single-channel currents.", "journal": "Biophysical journal", "date": "2007-08-01", "authors": "Riedel T, Schmalzing G, Markwardt F", "reference": { "type": "PubMed", "id": "17483156", "url": "https://pubmed.ncbi.nlm.nih.gov/17483156" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P98160-1", "protein_name": "Basement membrane-specific heparan sulfate proteoglycan core protein", "gene_name": "HSPG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95180-1", "protein_name": "Voltage-dependent T-type calcium channel subunit alpha-1H", "gene_name": "CACNA1H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P54289-1", "protein_name": "Voltage-dependent calcium channel subunit alpha-2/delta-1", "gene_name": "CACNA2D1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02641-1", "protein_name": "Voltage-dependent L-type calcium channel subunit beta-1", "gene_name": "CACNB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08289-1", "protein_name": "Voltage-dependent L-type calcium channel subunit beta-2", "gene_name": "CACNB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P54284-1", "protein_name": "Voltage-dependent L-type calcium channel subunit beta-3", "gene_name": "CACNB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10451-1", "protein_name": "Osteopontin", "gene_name": "SPP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92508-1", "protein_name": "Piezo-type mechanosensitive ion channel component 1", "gene_name": "PIEZO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17302-1", "protein_name": "Gap junction alpha-1 protein", "gene_name": "GJA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06756-1", "protein_name": "Integrin alpha-V", "gene_name": "ITGAV", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96RD7-1", "protein_name": "Pannexin-1", "gene_name": "PANX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08648-1", "protein_name": "Integrin alpha-5", "gene_name": "ITGA5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31749-1", "protein_name": "RAC-alpha serine/threonine-protein kinase", "gene_name": "AKT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05556-1", "protein_name": "Integrin beta-1", "gene_name": "ITGB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99572-1", "protein_name": "P2X purinoceptor 7", "gene_name": "P2RX7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05106-1", "protein_name": "Integrin beta-3", "gene_name": "ITGB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62955-1", "protein_name": "Voltage-dependent calcium channel gamma-7 subunit", "gene_name": "CACNG7", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P98160", "url": "https://www.uniprot.org/uniprotkb/P98160" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.17483156", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 17 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The pharmacokinetics, pharmacodynamics and tolerability of dabigatran etexilate, a new oral direct thrombin inhibitor, in healthy male subjects.", "journal": "British journal of clinical pharmacology", "date": "2007", "authors": "Stangier J, Rathgen K, Stahle H, Gansser D, Roth W", "reference": { "type": "PubMed", "id": "17506785", "url": "https://pubmed.ncbi.nlm.nih.gov/17506785" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P98160-1", "protein_name": "Basement membrane-specific heparan sulfate proteoglycan core protein", "gene_name": "HSPG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75056-1", "protein_name": "Syndecan-3", "gene_name": "SDC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07204-1", "protein_name": "Thrombomodulin", "gene_name": "THBD", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00734-1", "protein_name": "Prothrombin", "gene_name": "F2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q4KMQ2-1", "protein_name": "Anoctamin-6", "gene_name": "ANO6", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00468-1", "protein_name": "Agrin", "gene_name": "AGRN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q75V66-1", "protein_name": "Anoctamin-5", "gene_name": "ANO5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01008-1", "protein_name": "Antithrombin-III", "gene_name": "SERPINC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07093-1", "protein_name": "Glia-derived nexin", "gene_name": "SERPINE2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNN8-1", "protein_name": "Endothelial protein C receptor", "gene_name": "PROCR", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51654-1", "protein_name": "Glypican-3", "gene_name": "GPC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07359-1", "protein_name": "Platelet glycoprotein Ib alpha chain", "gene_name": "GP1BA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13224-1", "protein_name": "Platelet glycoprotein Ib beta chain", "gene_name": "GP1BB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24158-1", "protein_name": "Myeloblastin", "gene_name": "PRTN3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25116-1", "protein_name": "Proteinase-activated receptor 1", "gene_name": "F2R", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18827-1", "protein_name": "Syndecan-1", "gene_name": "SDC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04275-1", "protein_name": "von Willebrand factor", "gene_name": "VWF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17405-1", "protein_name": "Sphingomyelin phosphodiesterase", "gene_name": "SMPD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q76LX8-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 13", "gene_name": "ADAMTS13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N6Q3-1", "protein_name": "CD177 antigen", "gene_name": "CD177", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31431-1", "protein_name": "Syndecan-4", "gene_name": "SDC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y625-1", "protein_name": "Glypican-6", "gene_name": "GPC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05154-1", "protein_name": "Plasma serine protease inhibitor", "gene_name": "SERPINA5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05155-1", "protein_name": "Plasma protease C1 inhibitor", "gene_name": "SERPING1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N158-1", "protein_name": "Glypican-2", "gene_name": "GPC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P03951-1", "protein_name": "Coagulation factor XI", "gene_name": "F11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00451-1", "protein_name": "Coagulation factor VIII", "gene_name": "F8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00740-1", "protein_name": "Coagulation factor IX", "gene_name": "F9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02776-1", "protein_name": "Platelet factor 4", "gene_name": "PF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04070-1", "protein_name": "Vitamin K-dependent protein C", "gene_name": "PROC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P34741-1", "protein_name": "Syndecan-2", "gene_name": "SDC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12259-1", "protein_name": "Coagulation factor V", "gene_name": "F5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78333-1", "protein_name": "Glypican-5", "gene_name": "GPC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35052-1", "protein_name": "Glypican-1", "gene_name": "GPC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UK55-1", "protein_name": "Protein Z-dependent protease inhibitor", "gene_name": "SERPINA10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10720-1", "protein_name": "Platelet factor 4 variant", "gene_name": "PF4V1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07225-1", "protein_name": "Vitamin K-dependent protein S", "gene_name": "PROS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05546-1", "protein_name": "Heparin cofactor 2", "gene_name": "SERPIND1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22891-1", "protein_name": "Vitamin K-dependent protein Z", "gene_name": "PROZ", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00742-1", "protein_name": "Coagulation factor X", "gene_name": "F10", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75487-1", "protein_name": "Glypican-4", "gene_name": "GPC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14770-1", "protein_name": "Platelet glycoprotein IX", "gene_name": "GP9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40197-1", "protein_name": "Platelet glycoprotein V", "gene_name": "GP5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08709-1", "protein_name": "Coagulation factor VII", "gene_name": "F7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13726-1", "protein_name": "Tissue factor", "gene_name": "F3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05067-1", "protein_name": "Amyloid-beta precursor protein", "gene_name": "APP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05121-1", "protein_name": "Plasminogen activator inhibitor 1", "gene_name": "SERPINE1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P98160", "url": "https://www.uniprot.org/uniprotkb/P98160" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.17506785", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 47 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Hydrophobic ligand binding properties of the human lipocalin apolipoprotein M.", "journal": "Journal of lipid research", "date": "2007", "authors": "Ahnstrom J, Faber K, Axler O, Dahlback B", "reference": { "type": "PubMed", "id": "17525477", "url": "https://pubmed.ncbi.nlm.nih.gov/17525477" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P98160-1", "protein_name": "Basement membrane-specific heparan sulfate proteoglycan core protein", "gene_name": "HSPG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02753-1", "protein_name": "Retinol-binding protein 4", "gene_name": "RBP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75056-1", "protein_name": "Syndecan-3", "gene_name": "SDC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00468-1", "protein_name": "Agrin", "gene_name": "AGRN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17516-1", "protein_name": "Aldo-keto reductase family 1 member C4", "gene_name": "AKR1C4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04114-1", "protein_name": "Apolipoprotein B-100", "gene_name": "APOB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07954-1", "protein_name": "Prolow-density lipoprotein receptor-related protein 1", "gene_name": "LRP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95445-1", "protein_name": "Apolipoprotein M", "gene_name": "APOM", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q04828-1", "protein_name": "Aldo-keto reductase family 1 member C1", "gene_name": "AKR1C1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02655-1", "protein_name": "Apolipoprotein C-II", "gene_name": "APOC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42330-1", "protein_name": "Aldo-keto reductase family 1 member C3", "gene_name": "AKR1C3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04118-1", "protein_name": "Colipase", "gene_name": "CLPS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51654-1", "protein_name": "Glypican-3", "gene_name": "GPC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95237-1", "protein_name": "Lecithin retinol acyltransferase", "gene_name": "LRAT", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09455-1", "protein_name": "Retinol-binding protein 1", "gene_name": "RBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TC12-1", "protein_name": "Retinol dehydrogenase 11", "gene_name": "RDH11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50120-1", "protein_name": "Retinol-binding protein 2", "gene_name": "RBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6NUM9-1", "protein_name": "All-trans-retinol 13,14-reductase", "gene_name": "RETSAT", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18827-1", "protein_name": "Syndecan-1", "gene_name": "SDC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02656-1", "protein_name": "Apolipoprotein C-III", "gene_name": "APOC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02649-1", "protein_name": "Apolipoprotein E", "gene_name": "APOE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HAY6-1", "protein_name": "Beta,beta-carotene 15,15'-dioxygenase", "gene_name": "BCO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02766-1", "protein_name": "Transthyretin", "gene_name": "TTR", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31431-1", "protein_name": "Syndecan-4", "gene_name": "SDC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16233-1", "protein_name": "Pancreatic triacylglycerol lipase", "gene_name": "PNLIP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y625-1", "protein_name": "Glypican-6", "gene_name": "GPC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N158-1", "protein_name": "Glypican-2", "gene_name": "GPC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y561-1", "protein_name": "Low-density lipoprotein receptor-related protein 12", "gene_name": "LRP12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P98164-1", "protein_name": "Low-density lipoprotein receptor-related protein 2", "gene_name": "LRP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02652-1", "protein_name": "Apolipoprotein A-II", "gene_name": "APOA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14114-1", "protein_name": "Low-density lipoprotein receptor-related protein 8", "gene_name": "LRP8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06727-1", "protein_name": "Apolipoprotein A-IV", "gene_name": "APOA4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01130-1", "protein_name": "Low-density lipoprotein receptor", "gene_name": "LDLR", "tax_name": "Human" }, { "uniprot_canonical_ac": "P34741-1", "protein_name": "Syndecan-2", "gene_name": "SDC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78333-1", "protein_name": "Glypican-5", "gene_name": "GPC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35052-1", "protein_name": "Glypican-1", "gene_name": "GPC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P1J6-1", "protein_name": "Phospholipase B1, membrane-associated", "gene_name": "PLB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BYV7-1", "protein_name": "Carotenoid-cleaving dioxygenase, mitochondrial", "gene_name": "BCO2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75487-1", "protein_name": "Glypican-4", "gene_name": "GPC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IV16-1", "protein_name": "Glycosylphosphatidylinositol-anchored high density lipoprotein-binding protein 1", "gene_name": "GPIHBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06858-1", "protein_name": "Lipoprotein lipase", "gene_name": "LPL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z4F1-1", "protein_name": "Low-density lipoprotein receptor-related protein 10", "gene_name": "LRP10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02647-1", "protein_name": "Apolipoprotein A-I", "gene_name": "APOA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60218-1", "protein_name": "Aldo-keto reductase family 1 member B10", "gene_name": "AKR1B10", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P98160", "url": "https://www.uniprot.org/uniprotkb/P98160" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 22, "end_pos": 22, "sequence_org": "Q", "sequence_mut": "A", "comment": "Introduces a signal cleavage site. Abolishes interaction with lipoprotein particles. Leads to rapid elimination from plasma.", "evidence": [ { "database": "UniProtKB", "id": "O95445", "url": "https://www.uniprot.org/uniprotkb/O95445" }, { "database": "PubMed", "id": "18279674", "url": "https://pubmed.ncbi.nlm.nih.gov/18279674" }, { "database": "PubMed", "id": "17525477", "url": "https://pubmed.ncbi.nlm.nih.gov/17525477" }, { "database": "PubMed", "id": "18460466", "url": "https://pubmed.ncbi.nlm.nih.gov/18460466" } ], "uniprot_canonical_ac": "O95445-1" } ], "record_id": "pubmed.17525477", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 44 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Interaction of cartilage oligomeric matrix protein/thrombospondin 5 with aggrecan.", "journal": "The Journal of biological chemistry", "date": "2007", "authors": "Chen FH, Herndon ME, Patel N, Hecht JT, Tuan RS, Lawler J", "reference": { "type": "PubMed", "id": "17588949", "url": "https://pubmed.ncbi.nlm.nih.gov/17588949" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P98160-1", "protein_name": "Basement membrane-specific heparan sulfate proteoglycan core protein", "gene_name": "HSPG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51884-1", "protein_name": "Lumican", "gene_name": "LUM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02452-1", "protein_name": "Collagen alpha-1(I) chain", "gene_name": "COL1A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18084-1", "protein_name": "Integrin beta-5", "gene_name": "ITGB5", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00468-1", "protein_name": "Agrin", "gene_name": "AGRN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02751-15", "protein_name": "Fibronectin", "gene_name": "FN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P21810-1", "protein_name": "Biglycan", "gene_name": "BGN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92752-1", "protein_name": "Tenascin-R", "gene_name": "TNR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQP3-1", "protein_name": "Tenascin-N", "gene_name": "TNN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53420-1", "protein_name": "Collagen alpha-4(IV) chain", "gene_name": "COL4A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q06828-1", "protein_name": "Fibromodulin", "gene_name": "FMOD", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75096-1", "protein_name": "Low-density lipoprotein receptor-related protein 4", "gene_name": "LRP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10915-1", "protein_name": "Hyaluronan and proteoglycan link protein 1", "gene_name": "HAPLN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16112-1", "protein_name": "Aggrecan core protein", "gene_name": "ACAN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P21815-1", "protein_name": "Integrin-binding sialoprotein", "gene_name": "IBSP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49747-1", "protein_name": "Cartilage oligomeric matrix protein", "gene_name": "COMP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXN1-1", "protein_name": "Asporin", "gene_name": "ASPN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12110-1", "protein_name": "Collagen alpha-2(VI) chain", "gene_name": "COL6A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14031-1", "protein_name": "Collagen alpha-6(IV) chain", "gene_name": "COL4A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20908-1", "protein_name": "Collagen alpha-1(V) chain", "gene_name": "COL5A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02462-1", "protein_name": "Collagen alpha-1(IV) chain", "gene_name": "COL4A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08572-1", "protein_name": "Collagen alpha-2(IV) chain", "gene_name": "COL4A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20849-1", "protein_name": "Collagen alpha-1(IX) chain", "gene_name": "COL9A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25940-1", "protein_name": "Collagen alpha-3(V) chain", "gene_name": "COL5A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01955-1", "protein_name": "Collagen alpha-3(IV) chain", "gene_name": "COL4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14118-1", "protein_name": "Dystroglycan 1", "gene_name": "DAG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07942-1", "protein_name": "Laminin subunit beta-1", "gene_name": "LAMB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24043-1", "protein_name": "Laminin subunit alpha-2", "gene_name": "LAMA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25391-1", "protein_name": "Laminin subunit alpha-1", "gene_name": "LAMA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11047-1", "protein_name": "Laminin subunit gamma-1", "gene_name": "LAMC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10600-1", "protein_name": "Transforming growth factor beta-3 proprotein", "gene_name": "TGFB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13683-1", "protein_name": "Integrin alpha-7", "gene_name": "ITGA7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16787-2", "protein_name": "Laminin subunit alpha-3", "gene_name": "LAMA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18564-1", "protein_name": "Integrin beta-6", "gene_name": "ITGB6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16363-1", "protein_name": "Laminin subunit alpha-4", "gene_name": "LAMA4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15230-1", "protein_name": "Laminin subunit alpha-5", "gene_name": "LAMA5", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95460-1", "protein_name": "Matrilin-4", "gene_name": "MATN4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08514-1", "protein_name": "Integrin alpha-IIb", "gene_name": "ITGA2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06756-1", "protein_name": "Integrin alpha-V", "gene_name": "ITGAV", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53708-1", "protein_name": "Integrin alpha-8", "gene_name": "ITGA8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P21941-1", "protein_name": "Matrilin-1", "gene_name": "MATN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05556-1", "protein_name": "Integrin beta-1", "gene_name": "ITGB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02461-1", "protein_name": "Collagen alpha-1(III) chain", "gene_name": "COL3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29400-1", "protein_name": "Collagen alpha-5(IV) chain", "gene_name": "COL4A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14055-1", "protein_name": "Collagen alpha-2(IX) chain", "gene_name": "COL9A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09486-1", "protein_name": "SPARC", "gene_name": "SPARC", "tax_name": "Human" }, { "uniprot_canonical_ac": "A8TX70-1", "protein_name": "Collagen alpha-5(VI) chain", "gene_name": "COL6A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05997-1", "protein_name": "Collagen alpha-2(V) chain", "gene_name": "COL5A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "A6NMZ7-1", "protein_name": "Collagen alpha-6(VI) chain", "gene_name": "COL6A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12111-1", "protein_name": "Collagen alpha-3(VI) chain", "gene_name": "COL6A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08123-1", "protein_name": "Collagen alpha-2(I) chain", "gene_name": "COL1A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12109-1", "protein_name": "Collagen alpha-1(VI) chain", "gene_name": "COL6A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02458-2", "protein_name": "Collagen alpha-1(II) chain", "gene_name": "COL2A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14050-1", "protein_name": "Collagen alpha-3(IX) chain", "gene_name": "COL9A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05106-1", "protein_name": "Integrin beta-3", "gene_name": "ITGB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13611-1", "protein_name": "Versican core protein", "gene_name": "VCAN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07585-1", "protein_name": "Decorin", "gene_name": "DCN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04004-1", "protein_name": "Vitronectin", "gene_name": "VTN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NZW4-1", "protein_name": "Dentin sialophosphoprotein", "gene_name": "DSPP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13797-1", "protein_name": "Integrin alpha-9", "gene_name": "ITGA9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96GW7-1", "protein_name": "Brevican core protein", "gene_name": "BCAN", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15146-1", "protein_name": "Muscle, skeletal receptor tyrosine-protein kinase", "gene_name": "MUSK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13332-1", "protein_name": "Receptor-type tyrosine-protein phosphatase S", "gene_name": "PTPRS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20702-1", "protein_name": "Integrin alpha-X", "gene_name": "ITGAX", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17301-1", "protein_name": "Integrin alpha-2", "gene_name": "ITGA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15232-1", "protein_name": "Matrilin-3", "gene_name": "MATN3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22105-3", "protein_name": "Tenascin-X", "gene_name": "TNXB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13591-2", "protein_name": "Neural cell adhesion molecule 1", "gene_name": "NCAM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13316-1", "protein_name": "Dentin matrix acidic phosphoprotein 1", "gene_name": "DMP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55268-1", "protein_name": "Laminin subunit beta-2", "gene_name": "LAMB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24821-1", "protein_name": "Tenascin", "gene_name": "TNC", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14594-1", "protein_name": "Neurocan core protein", "gene_name": "NCAN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05067-1", "protein_name": "Amyloid-beta precursor protein", "gene_name": "APP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01137-1", "protein_name": "Transforming growth factor beta-1 proprotein", "gene_name": "TGFB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61812-1", "protein_name": "Transforming growth factor beta-2 proprotein", "gene_name": "TGFB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05121-1", "protein_name": "Plasminogen activator inhibitor 1", "gene_name": "SERPINE1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P98160", "url": "https://www.uniprot.org/uniprotkb/P98160" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.17588949", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 76 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "In-vitro profile and ex-vivo anticoagulant activity of the direct thrombin inhibitor dabigatran and its orally active prodrug, dabigatran etexilate.", "journal": "Thrombosis and haemostasis", "date": "2007", "authors": "Wienen W, Stassen JM, Priepke H, Ries UJ, Hauel N", "reference": { "type": "PubMed", "id": "17598008", "url": "https://pubmed.ncbi.nlm.nih.gov/17598008" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P98160-1", "protein_name": "Basement membrane-specific heparan sulfate proteoglycan core protein", "gene_name": "HSPG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75056-1", "protein_name": "Syndecan-3", "gene_name": "SDC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07204-1", "protein_name": "Thrombomodulin", "gene_name": "THBD", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00734-1", "protein_name": "Prothrombin", "gene_name": "F2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q4KMQ2-1", "protein_name": "Anoctamin-6", "gene_name": "ANO6", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00468-1", "protein_name": "Agrin", "gene_name": "AGRN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q75V66-1", "protein_name": "Anoctamin-5", "gene_name": "ANO5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01008-1", "protein_name": "Antithrombin-III", "gene_name": "SERPINC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07093-1", "protein_name": "Glia-derived nexin", "gene_name": "SERPINE2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNN8-1", "protein_name": "Endothelial protein C receptor", "gene_name": "PROCR", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51654-1", "protein_name": "Glypican-3", "gene_name": "GPC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07359-1", "protein_name": "Platelet glycoprotein Ib alpha chain", "gene_name": "GP1BA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13224-1", "protein_name": "Platelet glycoprotein Ib beta chain", "gene_name": "GP1BB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24158-1", "protein_name": "Myeloblastin", "gene_name": "PRTN3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25116-1", "protein_name": "Proteinase-activated receptor 1", "gene_name": "F2R", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18827-1", "protein_name": "Syndecan-1", "gene_name": "SDC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04275-1", "protein_name": "von Willebrand factor", "gene_name": "VWF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17405-1", "protein_name": "Sphingomyelin phosphodiesterase", "gene_name": "SMPD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q76LX8-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 13", "gene_name": "ADAMTS13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N6Q3-1", "protein_name": "CD177 antigen", "gene_name": "CD177", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31431-1", "protein_name": "Syndecan-4", "gene_name": "SDC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y625-1", "protein_name": "Glypican-6", "gene_name": "GPC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05154-1", "protein_name": "Plasma serine protease inhibitor", "gene_name": "SERPINA5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05155-1", "protein_name": "Plasma protease C1 inhibitor", "gene_name": "SERPING1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N158-1", "protein_name": "Glypican-2", "gene_name": "GPC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P03951-1", "protein_name": "Coagulation factor XI", "gene_name": "F11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00451-1", "protein_name": "Coagulation factor VIII", "gene_name": "F8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00740-1", "protein_name": "Coagulation factor IX", "gene_name": "F9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02776-1", "protein_name": "Platelet factor 4", "gene_name": "PF4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04070-1", "protein_name": "Vitamin K-dependent protein C", "gene_name": "PROC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P34741-1", "protein_name": "Syndecan-2", "gene_name": "SDC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12259-1", "protein_name": "Coagulation factor V", "gene_name": "F5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78333-1", "protein_name": "Glypican-5", "gene_name": "GPC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35052-1", "protein_name": "Glypican-1", "gene_name": "GPC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UK55-1", "protein_name": "Protein Z-dependent protease inhibitor", "gene_name": "SERPINA10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10720-1", "protein_name": "Platelet factor 4 variant", "gene_name": "PF4V1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07225-1", "protein_name": "Vitamin K-dependent protein S", "gene_name": "PROS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05546-1", "protein_name": "Heparin cofactor 2", "gene_name": "SERPIND1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22891-1", "protein_name": "Vitamin K-dependent protein Z", "gene_name": "PROZ", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00742-1", "protein_name": "Coagulation factor X", "gene_name": "F10", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75487-1", "protein_name": "Glypican-4", "gene_name": "GPC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14770-1", "protein_name": "Platelet glycoprotein IX", "gene_name": "GP9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40197-1", "protein_name": "Platelet glycoprotein V", "gene_name": "GP5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08709-1", "protein_name": "Coagulation factor VII", "gene_name": "F7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13726-1", "protein_name": "Tissue factor", "gene_name": "F3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05067-1", "protein_name": "Amyloid-beta precursor protein", "gene_name": "APP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05121-1", "protein_name": "Plasminogen activator inhibitor 1", "gene_name": "SERPINE1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P98160", "url": "https://www.uniprot.org/uniprotkb/P98160" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.17598008", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 47 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The calpains: modular designs and functional diversity.", "journal": "Genome biology", "date": "2007", "authors": "Croall DE, Ersfeld K", "reference": { "type": "PubMed", "id": "17608959", "url": "https://pubmed.ncbi.nlm.nih.gov/17608959" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P98160-1", "protein_name": "Basement membrane-specific heparan sulfate proteoglycan core protein", "gene_name": "HSPG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15502-3", "protein_name": "Elastin", "gene_name": "ELN", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43897-1", "protein_name": "Tolloid-like protein 1", "gene_name": "TLL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13444-1", "protein_name": "Disintegrin and metalloproteinase domain-containing protein 15", "gene_name": "ADAM15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92542-1", "protein_name": "Nicastrin", "gene_name": "NCSTN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02751-15", "protein_name": "Fibronectin", "gene_name": "FN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04632-1", "protein_name": "Calpain small subunit 1", "gene_name": "CAPNS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08246-1", "protein_name": "Neutrophil elastase", "gene_name": "ELANE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92743-1", "protein_name": "Serine protease HTRA1", "gene_name": "HTRA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBM4-1", "protein_name": "Opticin", "gene_name": "OPTC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16112-1", "protein_name": "Aggrecan core protein", "gene_name": "ACAN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P03956-1", "protein_name": "Interstitial collagenase", "gene_name": "MMP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39900-1", "protein_name": "Macrophage metalloelastase", "gene_name": "MMP12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14543-1", "protein_name": "Nidogen-1", "gene_name": "NID1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWY4-1", "protein_name": "Signal peptide, CUB and EGF-like domain-containing protein 1", "gene_name": "SCUBE1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35613-1", "protein_name": "Basigin", "gene_name": "BSG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50281-1", "protein_name": "Matrix metalloproteinase-14", "gene_name": "MMP14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TE57-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 16", "gene_name": "ADAMTS16", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNA0-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 5", "gene_name": "ADAMTS5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6MZZ7-1", "protein_name": "Calpain-13", "gene_name": "CAPN13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07711-1", "protein_name": "Procathepsin L", "gene_name": "CTSL", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75808-1", "protein_name": "Calpain-15", "gene_name": "CAPN15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16070-1", "protein_name": "CD44 antigen", "gene_name": "CD44", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08311-1", "protein_name": "Cathepsin G", "gene_name": "CTSG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10451-1", "protein_name": "Osteopontin", "gene_name": "SPP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25774-1", "protein_name": "Cathepsin S", "gene_name": "CTSS", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15484-1", "protein_name": "Calpain-5", "gene_name": "CAPN5", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60911-1", "protein_name": "Cathepsin L2", "gene_name": "CTSV", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07942-1", "protein_name": "Laminin subunit beta-1", "gene_name": "LAMB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49862-1", "protein_name": "Kallikrein-7", "gene_name": "KLK7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13753-1", "protein_name": "Laminin subunit gamma-2", "gene_name": "LAMC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11047-1", "protein_name": "Laminin subunit gamma-1", "gene_name": "LAMC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P45452-1", "protein_name": "Collagenase 3", "gene_name": "MMP13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24347-1", "protein_name": "Stromelysin-3", "gene_name": "MMP11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09238-1", "protein_name": "Stromelysin-2", "gene_name": "MMP10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51511-1", "protein_name": "Matrix metalloproteinase-15", "gene_name": "MMP15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96L46-1", "protein_name": "Calpain small subunit 2", "gene_name": "CAPNS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13751-1", "protein_name": "Laminin subunit beta-3", "gene_name": "LAMB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16787-2", "protein_name": "Laminin subunit alpha-3", "gene_name": "LAMA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15230-1", "protein_name": "Laminin subunit alpha-5", "gene_name": "LAMA5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09237-1", "protein_name": "Matrilysin", "gene_name": "MMP7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6L7-1", "protein_name": "Tolloid-like protein 2", "gene_name": "TLL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42574-1", "protein_name": "Caspase-3", "gene_name": "CASP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00747-1", "protein_name": "Plasminogen", "gene_name": "PLG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14780-1", "protein_name": "Matrix metalloproteinase-9", "gene_name": "MMP9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07585-1", "protein_name": "Decorin", "gene_name": "DCN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6W3-1", "protein_name": "Calpain-7", "gene_name": "CAPN7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13497-1", "protein_name": "Bone morphogenetic protein 1", "gene_name": "BMP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "A6NHC0-1", "protein_name": "Calpain-8", "gene_name": "CAPN8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14815-1", "protein_name": "Calpain-9", "gene_name": "CAPN9", "tax_name": "Human" }, { "uniprot_canonical_ac": "A8MX76-1", "protein_name": "Calpain-14", "gene_name": "CAPN14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12830-1", "protein_name": "Cadherin-1", "gene_name": "CDH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZSI9-1", "protein_name": "Calpain-12", "gene_name": "CAPN12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17655-1", "protein_name": "Calpain-2 catalytic subunit", "gene_name": "CAPN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6Q1-1", "protein_name": "Calpain-6", "gene_name": "CAPN6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08253-1", "protein_name": "72 kDa type IV collagenase", "gene_name": "MMP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IX30-1", "protein_name": "Signal peptide, CUB and EGF-like domain-containing protein 3", "gene_name": "SCUBE3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96GW7-1", "protein_name": "Brevican core protein", "gene_name": "BCAN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TE60-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 18", "gene_name": "ADAMTS18", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75173-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 4", "gene_name": "ADAMTS4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P2N4-3", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 9", "gene_name": "ADAMTS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHI8-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 1", "gene_name": "ADAMTS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UP79-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 8", "gene_name": "ADAMTS8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20807-1", "protein_name": "Calpain-3", "gene_name": "CAPN3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07384-1", "protein_name": "Calpain-1 catalytic subunit", "gene_name": "CAPN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HC96-1", "protein_name": "Calpain-10", "gene_name": "CAPN10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P43235-1", "protein_name": "Cathepsin K", "gene_name": "CTSK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UMQ6-1", "protein_name": "Calpain-11", "gene_name": "CAPN11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35555-1", "protein_name": "Fibrillin-1", "gene_name": "FBN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35556-1", "protein_name": "Fibrillin-2", "gene_name": "FBN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q75N90-1", "protein_name": "Fibrillin-3", "gene_name": "FBN3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20810-1", "protein_name": "Calpastatin", "gene_name": "CAST", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08254-1", "protein_name": "Stromelysin-1", "gene_name": "MMP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22894-1", "protein_name": "Neutrophil collagenase", "gene_name": "MMP8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99542-1", "protein_name": "Matrix metalloproteinase-19", "gene_name": "MMP19", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60882-1", "protein_name": "Matrix metalloproteinase-20", "gene_name": "MMP20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IU80-4", "protein_name": "Transmembrane protease serine 6", "gene_name": "TMPRSS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49768-1", "protein_name": "Presenilin-1", "gene_name": "PSEN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14672-1", "protein_name": "Disintegrin and metalloproteinase domain-containing protein 10", "gene_name": "ADAM10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01023-1", "protein_name": "Alpha-2-macroglobulin", "gene_name": "A2M", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78325-1", "protein_name": "Disintegrin and metalloproteinase domain-containing protein 8", "gene_name": "ADAM8", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P98160", "url": "https://www.uniprot.org/uniprotkb/P98160" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.17608959", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 81 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] } ]