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Reported structure can be attached to the following: N-56, N-128, N-175, N-352, N-361, N-413, N-444, N-528, N-568, N-603", "icn3d_view": {}, "start_pos": 175, "start_aa": "Asn", "end_pos": 175, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn175", "evidence": [ { "id": "10731668", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/10731668" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "10988252", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/10988252" } ], "filter_code": "001000000000000000000.0000000.00010000000000.0010000.1110100000.010100000011111000.00001.01000", "uniprot_canonical_ac": "P00533-1" }, { "glytoucan_ac": "G83461WR", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "GlycoSuiteDB curation notes. Reported structure can be attached to the following: N-56, N-128, N-175, N-352, N-361, N-413, N-444, N-528, N-568, N-603", "icn3d_view": {}, "start_pos": 352, "start_aa": "Asn", "end_pos": 352, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn352", "evidence": [ { "id": "10988252", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/10988252" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "10731668", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/10731668" } ], "filter_code": "001000000000000000000.0000000.00010000000000.0010000.1110100000.010100000011111000.00001.01000", "uniprot_canonical_ac": "P00533-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=1IVO&bu=0&command=select+.A:328;+center+selection;+zoom+selection" }, "start_pos": 352, "start_aa": "Asn", "end_pos": 352, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn352", "evidence": [ { "id": "29741879", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/29741879" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "P00533", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P00533#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "10731668", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/10731668" }, { "id": "12731890", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/12731890" }, { "id": "16083266", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16083266" }, { "id": "3B2U", "database": "PDB", "url": "https://www.rcsb.org/sequence/3B2U" }, { "id": "4UV7", "database": "PDB", "url": "https://www.rcsb.org/sequence/4UV7" }, { "id": "4KRO", "database": "PDB", "url": "https://www.rcsb.org/sequence/4KRO" }, { "id": "4KRM", "database": "PDB", "url": "https://www.rcsb.org/sequence/4KRM" }, { "id": "3NJP", "database": "PDB", "url": "https://www.rcsb.org/sequence/3NJP" }, { "id": "1MOX", "database": "PDB", "url": "https://www.rcsb.org/sequence/1MOX" }, { "id": "3P0Y", "database": "PDB", "url": "https://www.rcsb.org/sequence/3P0Y" }, { "id": "1IVO", "database": "PDB", "url": "https://www.rcsb.org/sequence/1IVO" }, { "id": "1NQL", "database": "PDB", "url": "https://www.rcsb.org/sequence/1NQL" }, { "id": "1YY9", "database": "PDB", "url": "https://www.rcsb.org/sequence/1YY9" }, { "id": "4UIP", "database": "PDB", "url": "https://www.rcsb.org/sequence/4UIP" }, { "id": "4KRP", "database": "PDB", "url": "https://www.rcsb.org/sequence/4KRP" }, { "id": "3B2V", "database": "PDB", "url": "https://www.rcsb.org/sequence/3B2V" }, { "id": "4KRL", "database": "PDB", "url": "https://www.rcsb.org/sequence/4KRL" }, { "id": "3QWQ", "database": "PDB", "url": "https://www.rcsb.org/sequence/3QWQ" }, { "id": "20837704", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/20837704" }, { "id": "12620237", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/12620237" }, { "id": "12297050", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/12297050" }, { "id": "12297049", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/12297049" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "7OM4", "database": "PDB", "url": "https://www.rcsb.org/structure/7OM4" }, { "id": "9Z9E", "database": "PDB", "url": "https://www.rcsb.org/structure/9Z9E" }, { "id": "9Z9F", "database": "PDB", "url": "https://www.rcsb.org/structure/9Z9F" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "P00533-1" }, { "glytoucan_ac": "G83461WR", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "GlycoSuiteDB curation notes. Reported structure can be attached to the following: N-56, N-128, N-175, N-352, N-361, N-413, N-444, N-528, N-568, N-603", "icn3d_view": {}, "start_pos": 361, "start_aa": "Asn", "end_pos": 361, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn361", "evidence": [ { "id": "10988252", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/10988252" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "10731668", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/10731668" } ], "filter_code": "001000000000000000000.0000000.00010000000000.0010000.1110100000.010100000011111000.00001.01000", "uniprot_canonical_ac": "P00533-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=1IVO&bu=0&command=select+.A:337;+center+selection;+zoom+selection" }, "start_pos": 361, "start_aa": "Asn", "end_pos": 361, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn361", "evidence": [ { "id": "P00533", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P00533#ptm_processing" }, { "id": "10731668", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/10731668" }, { "id": "12731890", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/12731890" }, { "id": "16083266", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16083266" }, { "id": "3B2U", "database": "PDB", "url": "https://www.rcsb.org/sequence/3B2U" }, { "id": "4UV7", "database": "PDB", "url": "https://www.rcsb.org/sequence/4UV7" }, { "id": "4KRO", "database": "PDB", "url": "https://www.rcsb.org/sequence/4KRO" }, { "id": "4KRM", "database": "PDB", "url": "https://www.rcsb.org/sequence/4KRM" }, { "id": "3NJP", "database": "PDB", "url": "https://www.rcsb.org/sequence/3NJP" }, { "id": "1IVO", "database": "PDB", "url": "https://www.rcsb.org/sequence/1IVO" }, { "id": "1NQL", "database": "PDB", "url": "https://www.rcsb.org/sequence/1NQL" }, { "id": "1YY9", "database": "PDB", "url": "https://www.rcsb.org/sequence/1YY9" }, { "id": "4KRP", "database": "PDB", "url": "https://www.rcsb.org/sequence/4KRP" }, { "id": "4KRL", "database": "PDB", "url": "https://www.rcsb.org/sequence/4KRL" }, { "id": "3QWQ", "database": "PDB", "url": "https://www.rcsb.org/sequence/3QWQ" }, { "id": "20837704", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/20837704" }, { "id": "12620237", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/12620237" }, { "id": "12297050", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/12297050" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "5XWD", "database": "PDB", "url": "https://www.rcsb.org/structure/5XWD" }, { "id": "6ARU", "database": "PDB", "url": "https://www.rcsb.org/structure/6ARU" }, { "id": "6B3S", "database": "PDB", "url": "https://www.rcsb.org/structure/6B3S" }, { "id": "7LEN", "database": "PDB", "url": "https://www.rcsb.org/structure/7LEN" }, { "id": "7OM4", "database": "PDB", "url": "https://www.rcsb.org/structure/7OM4" }, { "id": "8UKV", "database": "PDB", "url": "https://www.rcsb.org/structure/8UKV" }, { "id": "8UKW", "database": "PDB", "url": "https://www.rcsb.org/structure/8UKW" }, { "id": "8UKX", "database": "PDB", "url": "https://www.rcsb.org/structure/8UKX" }, { "id": "9IP7", "database": "PDB", "url": "https://www.rcsb.org/structure/9IP7" }, { "id": "9IPB", "database": "PDB", "url": "https://www.rcsb.org/structure/9IPB" }, { "id": "9Z9E", "database": "PDB", "url": "https://www.rcsb.org/structure/9Z9E" }, { "id": "9Z9F", "database": "PDB", "url": "https://www.rcsb.org/structure/9Z9F" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "P00533-1" }, { "glytoucan_ac": "G83461WR", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "GlycoSuiteDB curation notes. Reported structure can be attached to the following: N-56, N-128, N-175, N-352, N-361, N-413, N-444, N-528, N-568, N-603", "icn3d_view": {}, "start_pos": 413, "start_aa": "Asn", "end_pos": 413, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn413", "evidence": [ { "id": "10988252", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/10988252" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "10731668", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/10731668" } ], "filter_code": "001000000000000000000.0000000.00010000000000.0010000.1110100000.010100000011111000.00001.01000", "uniprot_canonical_ac": "P00533-1" }, { "glytoucan_ac": "G83461WR", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "GlycoSuiteDB curation notes. Reported structure can be attached to the following: N-56, N-128, N-175, N-352, N-361, N-413, N-444, N-528, N-568, N-603", "icn3d_view": {}, "start_pos": 444, "start_aa": "Asn", "end_pos": 444, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn444", "evidence": [ { "id": "10988252", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/10988252" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "10731668", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/10731668" } ], "filter_code": "001000000000000000000.0000000.00010000000000.0010000.1110100000.010100000011111000.00001.01000", "uniprot_canonical_ac": "P00533-1" }, { "glytoucan_ac": "G83461WR", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "GlycoSuiteDB curation notes. Reported structure can be attached to the following: N-56, N-128, N-175, N-352, N-361, N-413, N-444, N-528, N-568, N-603", "icn3d_view": {}, "start_pos": 528, "start_aa": "Asn", "end_pos": 528, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn528", "evidence": [ { "id": "10731668", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/10731668" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "10988252", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/10988252" } ], "filter_code": "001000000000000000000.0000000.00010000000000.0010000.1110100000.010100000011111000.00001.01000", "uniprot_canonical_ac": "P00533-1" }, { "glytoucan_ac": "G83461WR", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "GlycoSuiteDB curation notes. Reported structure can be attached to the following: N-56, N-128, N-175, N-352, N-361, N-413, N-444, N-528, N-568, N-603", "icn3d_view": {}, "start_pos": 568, "start_aa": "Asn", "end_pos": 568, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn568", "evidence": [ { "id": "10988252", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/10988252" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "10731668", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/10731668" } ], "filter_code": "001000000000000000000.0000000.00010000000000.0010000.1110100000.010100000011111000.00001.01000", "uniprot_canonical_ac": "P00533-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=1YY9&bu=0&command=select+.A:544;+center+selection;+zoom+selection" }, "start_pos": 568, "start_aa": "Asn", "end_pos": 568, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn568", "evidence": [ { "id": "P00533", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P00533#ptm_processing" }, { "id": "19159218", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19159218" }, { "id": "10731668", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/10731668" }, { "id": "12731890", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/12731890" }, { "id": "16083266", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16083266" }, { "id": "1NQL", "database": "PDB", "url": "https://www.rcsb.org/sequence/1NQL" }, { "id": "1YY9", "database": "PDB", "url": "https://www.rcsb.org/sequence/1YY9" }, { "id": "12620237", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/12620237" }, { "id": "5XWD", "database": "PDB", "url": "https://www.rcsb.org/structure/5XWD" }, { "id": "8UKW", "database": "PDB", "url": "https://www.rcsb.org/structure/8UKW" }, { "id": "8UKX", "database": "PDB", "url": "https://www.rcsb.org/structure/8UKX" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "P00533-1" }, { "glytoucan_ac": "G23863VK", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 56, "start_aa": "Asn", "end_pos": 56, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn56", "evidence": [ { "id": "10731668", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/10731668" }, { "id": "137", "database": "GlyConnect", "url": "https://glyconnect.expasy.org/browser/proteins/137" } ], "filter_code": "001000000000000000000.0000000.00010000000000.0100000.1110000000.010111100011111101.00010.01000", "uniprot_canonical_ac": "P00533-1" }, { "glytoucan_ac": "G78059CC", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "GlycoSuiteDB curation notes. Reported structure can be attached to the following: ASN-56 ; ASN-56", "icn3d_view": {}, "start_pos": 56, "start_aa": "Asn", "end_pos": 56, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn56", "evidence": [ { "id": "10731668", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/10731668" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "10988252", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/10988252" }, { "id": "137", "database": "GlyConnect", "url": "https://glyconnect.expasy.org/browser/proteins/137" } ], "filter_code": "001000000000000000000.0000000.00010000000000.0100000.1110000000.010100000001111000.10000.01000", "uniprot_canonical_ac": "P00533-1" }, { "glytoucan_ac": "G83461WR", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "GlycoSuiteDB curation notes. Reported structure can be attached to the following: N-56, N-128, N-175, N-352, N-361, N-413, N-444, N-528, N-568, N-603", "icn3d_view": {}, "start_pos": 56, "start_aa": "Asn", "end_pos": 56, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn56", "evidence": [ { "id": "10731668", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/10731668" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "10988252", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/10988252" }, { "id": "137", "database": "GlyConnect", "url": "https://glyconnect.expasy.org/browser/proteins/137" } ], "filter_code": "001000000000000000000.0000000.00010000000000.0010000.1110100000.010100000011111000.00001.01000", "uniprot_canonical_ac": "P00533-1" }, { "glytoucan_ac": "G84452RH", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 56, "start_aa": "Asn", "end_pos": 56, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn56", "evidence": [ { "id": "10731668", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/10731668" }, { "id": "137", "database": "GlyConnect", "url": "https://glyconnect.expasy.org/browser/proteins/137" } ], "filter_code": "001000000000000000000.0000000.00010000000000.0010000.1110100000.010111000011111101.00100.01000", "uniprot_canonical_ac": "P00533-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "Complex", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) (complex) asparagine;Complex", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=1IVO&bu=0&command=select+.A:32;+center+selection;+zoom+selection" }, "start_pos": 56, "start_aa": "Asn", "end_pos": 56, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn56", "evidence": [ { "id": "P00533", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P00533#ptm_processing" }, { "id": "10731668", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/10731668" }, { "id": "12731890", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/12731890" }, { "id": "16083266", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16083266" }, { "id": "3NJP", "database": "PDB", "url": "https://www.rcsb.org/sequence/3NJP" }, { "id": "1MOX", "database": "PDB", "url": "https://www.rcsb.org/sequence/1MOX" }, { "id": "1IVO", "database": "PDB", "url": "https://www.rcsb.org/sequence/1IVO" }, { "id": "3QWQ", "database": "PDB", "url": "https://www.rcsb.org/sequence/3QWQ" }, { "id": "20837704", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/20837704" }, { "id": "12297050", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/12297050" }, { "id": "12297049", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/12297049" }, { "id": "1YY9", "database": "PDB", "url": "https://www.rcsb.org/structure/1YY9" }, { "id": "5WB7", "database": "PDB", "url": "https://www.rcsb.org/structure/5WB7" }, { "id": "5XWD", "database": "PDB", "url": "https://www.rcsb.org/structure/5XWD" }, { "id": "7LFR", "database": "PDB", "url": "https://www.rcsb.org/structure/7LFR" }, { "id": "7LFS", "database": "PDB", "url": "https://www.rcsb.org/structure/7LFS" }, { "id": "7OM4", "database": "PDB", "url": "https://www.rcsb.org/structure/7OM4" }, { "id": "8HGO", "database": "PDB", "url": "https://www.rcsb.org/structure/8HGO" }, { "id": "8HGP", "database": "PDB", "url": "https://www.rcsb.org/structure/8HGP" }, { "id": "8HGS", "database": "PDB", "url": "https://www.rcsb.org/structure/8HGS" }, { "id": "9Z9E", "database": "PDB", "url": "https://www.rcsb.org/structure/9Z9E" }, { "id": "9Z9F", "database": "PDB", "url": "https://www.rcsb.org/structure/9Z9F" } ], "filter_code": "001000000000000000000.10000000000000.00.01000", "uniprot_canonical_ac": "P00533-1" }, { "glytoucan_ac": "G83461WR", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "GlycoSuiteDB curation notes. Reported structure can be attached to the following: N-56, N-128, N-175, N-352, N-361, N-413, N-444, N-528, N-568, N-603", "icn3d_view": {}, "start_pos": 603, "start_aa": "Asn", "end_pos": 603, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn603", "evidence": [ { "id": "10731668", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/10731668" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "10988252", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/10988252" } ], "filter_code": "001000000000000000000.0000000.00010000000000.0010000.1110100000.010100000011111000.00001.01000", "uniprot_canonical_ac": "P00533-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=1NQL&bu=0&command=select+.A:579;+center+selection;+zoom+selection" }, "start_pos": 603, "start_aa": "Asn", "end_pos": 603, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn603", "evidence": [ { "id": "P00533", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P00533#ptm_processing" }, { "id": "10731668", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/10731668" }, { "id": "12731890", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/12731890" }, { "id": "16083266", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16083266" }, { "id": "1NQL", "database": "PDB", "url": "https://www.rcsb.org/sequence/1NQL" }, { "id": "1YY9", "database": "PDB", "url": "https://www.rcsb.org/sequence/1YY9" }, { "id": "12620237", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/12620237" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "P00533-1" } ], "glycan_expression": [ { "glytoucan_ac": "G83461WR", "abundance": "", "tissue": { "name": "ovary", "namespace": "UBERON", "id": "0000992", "url": "http://purl.obolibrary.org/obo/UBERON_0000992" }, "species": { "name": "Homo sapiens", "taxid": 9606, "reference_species": "Homo sapiens [9606]", "common_name": "Human", "glygen_name": "Human" }, "cell_line": {}, "uniprot_canonical_ac": "P00533-1", "residue": "Asn", "start_pos": 56, "end_pos": 56 }, { "glytoucan_ac": "G84452RH", "abundance": "", "tissue": { "name": "ovary", "namespace": "UBERON", "id": "0000992", "url": "http://purl.obolibrary.org/obo/UBERON_0000992" }, "species": { "name": "Homo sapiens", "taxid": 9606, "reference_species": "Homo sapiens [9606]", "common_name": "Human", "glygen_name": "Human" }, "cell_line": {}, "uniprot_canonical_ac": "P00533-1", "residue": "Asn", "start_pos": 56, "end_pos": 56 }, { "glytoucan_ac": "G78059CC", "abundance": "", "tissue": { "name": "ovary", "namespace": "UBERON", "id": "0000992", "url": "http://purl.obolibrary.org/obo/UBERON_0000992" }, "species": { "name": "Homo sapiens", "taxid": 9606, "reference_species": "Homo sapiens [9606]", "common_name": "Human", "glygen_name": "Human" }, "cell_line": {}, "uniprot_canonical_ac": "P00533-1", "residue": "Asn", "start_pos": 56, "end_pos": 56 }, { "glytoucan_ac": "G23863VK", "abundance": "", "tissue": { "name": "ovary", "namespace": "UBERON", "id": "0000992", "url": "http://purl.obolibrary.org/obo/UBERON_0000992" }, "species": { "name": "Homo sapiens", "taxid": 9606, "reference_species": "Homo sapiens [9606]", "common_name": "Human", "glygen_name": "Human" }, "cell_line": {}, "uniprot_canonical_ac": "P00533-1", "residue": "Asn", "start_pos": 56, "end_pos": 56 } ], "record_id": "pubmed.10731668", "abstract": "", "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "glytoucan_ac" ] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 18 }, { "field": "total_sites", "count": 10 }, { "field": "n_linked_sites", "count": 10 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 10 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 4 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 10 }, { "field": "exact_n_linked_sites", "count": 10 }, { "field": "exact_n_linked_glycan_sites", "count": 10 }, { "field": "exact_n_linked_glycans", "count": 4 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl", "filter_code", "uniprot_canonical_ac", "icn3d_view.label", "icn3d_view.url" ] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 5 }, { "field": "total_sites", "count": 5 }, { "field": "n_linked_sites", "count": 5 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 5 }, { "field": "exact_n_linked_sites", "count": 5 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl", "filter_code", "uniprot_canonical_ac", "icn3d_view.label", "icn3d_view.url" ] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 13 }, { "field": "total_sites", "count": 10 }, { "field": "n_linked_sites", "count": 10 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 10 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 4 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 10 }, { "field": "exact_n_linked_sites", "count": 10 }, { "field": "exact_n_linked_glycan_sites", "count": 10 }, { "field": "exact_n_linked_glycans", "count": 4 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl", "filter_code", "uniprot_canonical_ac", "icn3d_view.label", "icn3d_view.url" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Threonine phosphorylation diverts internalized epidermal growth factor receptors from a degradative pathway to the recycling endosome.", "journal": "The Journal of biological chemistry", "date": "2000", "authors": "Bao J, Alroy I, Waterman H, Schejter ED, Brodie C, Gruenberg J, Yarden Y", "reference": { "type": "PubMed", "id": "10816576", "url": "https://pubmed.ncbi.nlm.nih.gov/10816576" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P00533-1", "protein_name": "Epidermal growth factor receptor", "gene_name": "EGFR", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P00533", "url": "https://www.uniprot.org/uniprotkb/P00533" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 678, "end_pos": 678, "kinase_uniprot_canonical_ac": "P17252-1", "kinase_gene_name": "PRKCA", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P00533", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P00533" }, { "database": "PubMed", "id": "10816576", "url": "https://pubmed.ncbi.nlm.nih.gov/10816576" } ], "site_lbl": "Thr678", "uniprot_canonical_ac": "P00533-1" }, { "start_pos": 678, "end_pos": 678, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine; by PKC and PKD/PRKD1", "evidence": [ { "database": "UniProtKB", "id": "P00533", "url": "https://www.uniprot.org/uniprotkb/P00533" }, { "database": "iPTMnet", "id": "P00533", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P00533" }, { "database": "PubMed", "id": "10816576", "url": "https://pubmed.ncbi.nlm.nih.gov/10816576" }, { "database": "PubMed", "id": "34155348", "url": "https://pubmed.ncbi.nlm.nih.gov/34155348" }, { "database": "PubMed", "id": "10523301", "url": "https://pubmed.ncbi.nlm.nih.gov/10523301" } ], "site_lbl": "Thr678", "uniprot_canonical_ac": "P00533-1" } ], "record_id": "pubmed.10816576", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Characterization of the carbohydrate chains of the secreted form of the human epidermal growth factor receptor.", "journal": "Glycobiology", "date": "2000", "authors": "Stroop CJ, Weber W, Gerwig GJ, Nimtz M, Kamerling JP, Vliegenthart JF", "reference": { "type": "PubMed", "id": "10988252", "url": "https://pubmed.ncbi.nlm.nih.gov/10988252" }, "referenced_glycans": [ { "glytoucan_ac": "G01120GS" }, { "glytoucan_ac": "G59590OJ" }, { "glytoucan_ac": "G79394LC" }, { "glytoucan_ac": "G79556AB" }, { "glytoucan_ac": "G79809MM" }, { "glytoucan_ac": "G52692IB" }, { "glytoucan_ac": "G52880ZN" }, { "glytoucan_ac": "G07041CT" }, { "glytoucan_ac": "G07337US" }, { "glytoucan_ac": "G82140BL" }, { "glytoucan_ac": "G83161QT" }, { "glytoucan_ac": "G83461WR" }, { "glytoucan_ac": "G13156PQ" }, { "glytoucan_ac": "G72797UR" }, { "glytoucan_ac": "G20425TQ" }, { "glytoucan_ac": "G65019XG" }, { "glytoucan_ac": "G65635AB" }, { "glytoucan_ac": "G66163OV" }, { "glytoucan_ac": "G43402RG" }, { "glytoucan_ac": "G43665PB" }, { "glytoucan_ac": "G44346CQ" }, { "glytoucan_ac": "G44490NG" }, { "glytoucan_ac": "G44623TX" }, { "glytoucan_ac": "G44660UQ" }, { "glytoucan_ac": "G25451PN" }, { "glytoucan_ac": "G11561RV" }, { "glytoucan_ac": "G11911BT" }, { "glytoucan_ac": "G12728EY" }, { "glytoucan_ac": "G74859XI" }, { "glytoucan_ac": "G96914KN" }, { "glytoucan_ac": "G97765TT" }, { "glytoucan_ac": "G60215UL" }, { "glytoucan_ac": "G91425YG" }, { "glytoucan_ac": "G80966KZ" }, { "glytoucan_ac": "G05724UK" }, { "glytoucan_ac": "G06110VR" }, { "glytoucan_ac": "G06356OH" }, { "glytoucan_ac": "G53752TA" }, { "glytoucan_ac": "G54505OS" }, { "glytoucan_ac": "G84330VA" }, { "glytoucan_ac": "G84452RH" }, { "glytoucan_ac": "G84543RP" }, { "glytoucan_ac": "G84783XD" }, { "glytoucan_ac": "G85098WU" }, { "glytoucan_ac": "G40490KT" }, { "glytoucan_ac": "G40702WU" }, { "glytoucan_ac": "G21737WY" }, { "glytoucan_ac": "G22310AV" }, { "glytoucan_ac": "G22625SJ" }, { 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"glytoucan_ac": "G68668TB" }, { "glytoucan_ac": "G69834CE" }, { "glytoucan_ac": "G69982RY" } ], "referenced_proteins": [ { "uniprot_canonical_ac": "P00533-1", "protein_name": "Epidermal growth factor receptor", "gene_name": "EGFR", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P00533", "url": "https://www.uniprot.org/uniprotkb/P00533" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "glycosylation": [ { "glytoucan_ac": "G83461WR", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "GlycoSuiteDB curation notes. 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"10988252", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/10988252" }, { "id": "137", "database": "GlyConnect", "url": "https://glyconnect.expasy.org/browser/proteins/137" } ], "filter_code": "000000000000000000000.0000000.00010000000000.0010000.1110000000.000000000001000000.00001.01000", "uniprot_canonical_ac": "P00533-1" }, { "glytoucan_ac": "G02030ZB", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "evidence": [ { "id": "10988252", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/10988252" }, { "id": "137", "database": "GlyConnect", "url": "https://glyconnect.expasy.org/browser/proteins/137" } ], "filter_code": "000000000000000000000.0000000.00010000000000.0010000.1110100000.000111000001111101.00100.01000", "uniprot_canonical_ac": "P00533-1" }, { "glytoucan_ac": "G03754YM", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "evidence": [ { "id": "10988252", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/10988252" }, { "id": "137", "database": "GlyConnect", "url": "https://glyconnect.expasy.org/browser/proteins/137" } ], "filter_code": "000000000000000000000.0000000.00010000000000.0000100.1110100000.000000000001000000.10000.01000", "uniprot_canonical_ac": "P00533-1" }, { "glytoucan_ac": "G04672QB", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "evidence": [ { "id": "10988252", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/10988252" }, { "id": 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"reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "evidence": [ { "id": "10988252", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/10988252" }, { "id": "137", "database": "GlyConnect", "url": "https://glyconnect.expasy.org/browser/proteins/137" } ], "filter_code": "000000000000000000000.0000000.00010000000000.0100000.1100000000.110111100011111111.00010.01000", "uniprot_canonical_ac": "P00533-1" }, { "glytoucan_ac": "G06356OH", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "evidence": [ { "id": "10988252", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/10988252" }, { "id": "137", "database": "GlyConnect", "url": "https://glyconnect.expasy.org/browser/proteins/137" } 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