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Biol.", "date": "2009", "authors": "Avramova Zoya", "reference": { "type": "PubMed", "id": "19412892", "url": "https://pubmed.ncbi.nlm.nih.gov/19412892" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P0CB22-1", "protein_name": "Histone-lysine N-methyltransferase ATX2", "gene_name": "ATX2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9C5X4-1", "protein_name": "Histone H3-lysine(4) N-trimethyltransferase ATX1", "gene_name": "ATX1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P0CB22", "url": "https://www.uniprot.org/uniprotkb/P0CB22" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.19412892", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": 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Opin. 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Biol.", "date": "1988", "authors": "Feinbaum R L, Ausubel F M", "reference": { "type": "PubMed", "id": "3386631", "url": "https://pubmed.ncbi.nlm.nih.gov/3386631" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P13114-1", "protein_name": "Chalcone synthase", "gene_name": "CHS", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P13114", "url": "https://www.uniprot.org/uniprotkb/P13114" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.3386631", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The PHYC gene of Arabidopsis. 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"field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Chemical phenotypes of the hmg1 and hmg2 mutants of Arabidopsis demonstrate the in-planta role of HMG-CoA reductase in triterpene biosynthesis.", "journal": "Chemical & pharmaceutical bulletin", "date": "2007-10", "authors": "Ohyama Kiyoshi, Suzuki Masashi, Masuda Kazuo, Yoshida Shigeo, Muranaka Toshiya", "reference": { "type": "PubMed", "id": "17917299", "url": "https://pubmed.ncbi.nlm.nih.gov/17917299" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P14891-1", "protein_name": "3-hydroxy-3-methylglutaryl-coenzyme A reductase 1", "gene_name": "HMG1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P43256-1", "protein_name": "3-hydroxy-3-methylglutaryl-coenzyme A reductase 2", "gene_name": "HMG2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P14891", "url": "https://www.uniprot.org/uniprotkb/P14891" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.17917299", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", 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"Arabidopsis 3-hydroxy-3-methylglutaryl-CoA reductase is regulated at the post-translational level in response to alterations of the sphingolipid and the sterol biosynthetic pathways.", "journal": "Phytochemistry", "date": "2009-01", "authors": "Nieto Benjam\u00edn, For\u00e9s Oriol, Arr\u00f3 Montserrat, Ferrer Albert", "reference": { "type": "PubMed", "id": "19041104", "url": "https://pubmed.ncbi.nlm.nih.gov/19041104" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P14891-1", "protein_name": "3-hydroxy-3-methylglutaryl-coenzyme A reductase 1", "gene_name": "HMG1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P43256-1", "protein_name": "3-hydroxy-3-methylglutaryl-coenzyme A reductase 2", "gene_name": "HMG2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P14891", "url": "https://www.uniprot.org/uniprotkb/P14891" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.19041104", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": 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[] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Complete blockage of the mevalonate pathway results in male gametophyte lethality.", "journal": "Journal of experimental botany", "date": "2009", "authors": "Suzuki Masashi, Nakagawa Shoko, Kamide Yukiko, Kobayashi Keiko, Ohyama Kiyoshi, Hashinokuchi Hiromi, Kiuchi Reiko, Saito Kazuki, Muranaka Toshiya, Nagata Noriko", "reference": { "type": "PubMed", "id": "19363204", "url": "https://pubmed.ncbi.nlm.nih.gov/19363204" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P14891-1", "protein_name": "3-hydroxy-3-methylglutaryl-coenzyme A reductase 1", "gene_name": "HMG1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P43256-1", "protein_name": "3-hydroxy-3-methylglutaryl-coenzyme A reductase 2", "gene_name": "HMG2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P14891", "url": "https://www.uniprot.org/uniprotkb/P14891" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], 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[3702]" } ], "mutagenesis": [ { "start_pos": 218, "end_pos": 218, "sequence_org": "G", "sequence_mut": "R", "comment": "In sud1-1; No visible phenotype except glossy shoots, but is able to suppress the dry2 phenotype.", "evidence": [ { "database": "UniProtKB", "id": "F4JKK0", "url": "https://www.uniprot.org/uniprotkb/F4JKK0" }, { "database": "PubMed", "id": "23404890", "url": "https://pubmed.ncbi.nlm.nih.gov/23404890" } ], "uniprot_canonical_ac": "F4JKK0-1" }, { "start_pos": 244, "end_pos": 244, "sequence_org": "R", "sequence_mut": "K", "comment": "In sud1-3; Able to suppress the dry2 phenotype.", "evidence": [ { "database": "UniProtKB", "id": "F4JKK0", "url": "https://www.uniprot.org/uniprotkb/F4JKK0" }, { "database": "PubMed", "id": "23404890", "url": "https://pubmed.ncbi.nlm.nih.gov/23404890" } ], "uniprot_canonical_ac": "F4JKK0-1" }, { "start_pos": 360, "end_pos": 360, "sequence_org": "G", "sequence_mut": "E", "comment": "In sud1-2; Able to suppress the dry2 phenotype.", 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HMGR1) from Arabidopsis thaliana, and its inactivation by phosphorylation at Ser577 by Brassica oleracea 3-hydroxy-3-methylglutaryl-CoA reductase kinase.", "journal": "European journal of biochemistry", "date": "1995-10-15", "authors": "Dale S, Arr\u00f3 M, Becerra B, Morrice N G, Boronat A, Hardie D G, Ferrer A", "reference": { "type": "PubMed", "id": "7588795", "url": "https://pubmed.ncbi.nlm.nih.gov/7588795" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P14891-1", "protein_name": "3-hydroxy-3-methylglutaryl-coenzyme A reductase 1", "gene_name": "HMG1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P14891", "url": "https://www.uniprot.org/uniprotkb/P14891" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "phosphorylation": [ { "start_pos": 577, "end_pos": 577, 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Arabidopsis thaliana acetohydroxyacid synthase on the sensitivity to imidazolinone and sulfonylurea herbicides.", "journal": "FEBS letters", "date": "1999-06-11", "authors": "Lee Y T, Chang A K, Duggleby R G", "reference": { "type": "PubMed", "id": "10386618", "url": "https://pubmed.ncbi.nlm.nih.gov/10386618" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P17597-1", "protein_name": "Acetolactate synthase, chloroplastic", "gene_name": "ALS", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P17597", "url": "https://www.uniprot.org/uniprotkb/P17597" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "mutagenesis": [ { "start_pos": 653, "end_pos": 653, "sequence_org": "S", "sequence_mut": "A", "comment": "No effect on catalytic activity or sensitivity to herbicides.", "evidence": [ { 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[] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "An RNA polymerase II- and AGO4-associated protein acts in RNA-directed DNA methylation.", 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Biol.", "date": "1991", "authors": "Benli M, Schulz R, Apel K", "reference": { "type": "PubMed", "id": "1714319", "url": "https://pubmed.ncbi.nlm.nih.gov/1714319" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P21218-1", "protein_name": "Protochlorophyllide reductase B, chloroplastic", "gene_name": "PORB", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P21218", "url": "https://www.uniprot.org/uniprotkb/P21218" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.1714319", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] 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"Deletion of a chaperonin 60 beta gene leads to cell death in the Arabidopsis lesion initiation 1 mutant.", "journal": "Plant & cell physiology", "date": "2003-03", "authors": "Ishikawa Atsushi, Tanaka Hideaki, Nakai Masato, Asahi Tadashi", "reference": { "type": "PubMed", "id": "12668771", "url": "https://pubmed.ncbi.nlm.nih.gov/12668771" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P21240-1", "protein_name": "Chaperonin 60 subunit beta 1, chloroplastic", "gene_name": "CPN60B1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P21240", "url": "https://www.uniprot.org/uniprotkb/P21240" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.12668771", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], 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Soc. 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