[ { "title": "Interactions of abscisic acid and sugar signalling in the regulation of leaf senescence.", "journal": "Planta", "date": "2004-09", "authors": "Pourtau Nathalie, Mar\u00e8s Magali, Purdy Sarah, Quentin Nicolas, Ru\u00ebl Alexandra, Wingler Astrid", "reference": { "type": "PubMed", "id": "15118859", "url": "https://pubmed.ncbi.nlm.nih.gov/15118859" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9SJN0-1", "protein_name": "Protein ABSCISIC ACID-INSENSITIVE 5", "gene_name": "ABI5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "A0MES8-1", "protein_name": "Ethylene-responsive transcription factor ABI4", "gene_name": "ABI4", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SJN0", "url": "https://www.uniprot.org/uniprotkb/Q9SJN0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis 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U.S.A.", "date": "2008", "authors": "Chen Hao, Zhang Jingyu, Neff Michael M, Hong Suk-Whan, Zhang Huiyong, Deng Xing-Wang, Xiong Liming", "reference": { "type": "PubMed", "id": "18332440", "url": "https://pubmed.ncbi.nlm.nih.gov/18332440" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9SJN0-1", "protein_name": "Protein ABSCISIC ACID-INSENSITIVE 5", "gene_name": "ABI5", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SJN0", "url": "https://www.uniprot.org/uniprotkb/Q9SJN0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.18332440", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ 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"authors": "Du Liqun, Ali Gul S, Simons Kayla A, Hou Jingguo, Yang Tianbao, Reddy A S N, Poovaiah B W", "reference": { "type": "PubMed", "id": "19122675", "url": "https://pubmed.ncbi.nlm.nih.gov/19122675" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8GSA7-1", "protein_name": "Calmodulin-binding transcription activator 3", "gene_name": "CAMTA3; SR1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GSA7", "url": "https://www.uniprot.org/uniprotkb/Q8GSA7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.19122675", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ 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Prasad K V S K, Savchenko T, Celesnik H, Dehesh K, Levy M, Mitchell-Olds T, Reddy A S N", "reference": { "type": "PubMed", "id": "23072934", "url": "https://pubmed.ncbi.nlm.nih.gov/23072934" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8GSA7-1", "protein_name": "Calmodulin-binding transcription activator 3", "gene_name": "CAMTA3; SR1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GSA7", "url": "https://www.uniprot.org/uniprotkb/Q8GSA7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.23072934", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", 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by splicing and alternative 3' end processing of mRNAs.", "journal": "Plant Cell", "date": "2007", "authors": "Wachter Andreas, Tunc-Ozdemir Meral, Grove Beth C, Green Pamela J, Shintani David K, Breaker Ronald R", "reference": { "type": "PubMed", "id": "17993623", "url": "https://pubmed.ncbi.nlm.nih.gov/17993623" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O82392-1", "protein_name": "Phosphomethylpyrimidine synthase, chloroplastic", "gene_name": "THIC", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O82392", "url": "https://www.uniprot.org/uniprotkb/O82392" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.17993623", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": 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"o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Vitamin B1 biosynthesis in plants requires the essential iron sulfur cluster protein, THIC.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2007-12-04", "authors": "Raschke Maja, B\u00fcrkle Lukas, M\u00fcller Nadine, Nunes-Nesi Adriano, Fernie Alisdair R, Arigoni Duilio, Amrhein Nikolaus, Fitzpatrick Teresa B", "reference": { "type": "PubMed", "id": "18048325", "url": "https://pubmed.ncbi.nlm.nih.gov/18048325" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O82392-1", "protein_name": "Phosphomethylpyrimidine synthase, chloroplastic", "gene_name": "THIC", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O82392", "url": "https://www.uniprot.org/uniprotkb/O82392" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.18048325", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "AtTHIC, a gene involved in thiamine biosynthesis in Arabidopsis thaliana.", "journal": "Cell research", "date": "2008-05", "authors": "Kong Danyu, Zhu Yuxing, Wu Huilan, Cheng Xudong, Liang Hui, Ling Hong-Qing", "reference": { "type": "PubMed", "id": "18332905", "url": "https://pubmed.ncbi.nlm.nih.gov/18332905" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O82392-1", "protein_name": "Phosphomethylpyrimidine synthase, chloroplastic", "gene_name": "THIC", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O82392", "url": "https://www.uniprot.org/uniprotkb/O82392" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.18332905", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": 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[] } ] }, { "title": "Orchestration of thiamin biosynthesis and central metabolism by combined action of the thiamin pyrophosphate riboswitch and the circadian clock in Arabidopsis.", "journal": "Plant Cell", "date": "2013", "authors": "Bocobza Samuel E, Malitsky Sergey, Ara\u00fajo Wagner L, Nunes-Nesi Adriano, Meir Sagit, Shapira Michal, Fernie Alisdair R, Aharoni Asaph", "reference": { "type": "PubMed", "id": "23341335", "url": "https://pubmed.ncbi.nlm.nih.gov/23341335" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O82392-1", "protein_name": "Phosphomethylpyrimidine synthase, chloroplastic", "gene_name": "THIC", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O82392", "url": "https://www.uniprot.org/uniprotkb/O82392" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": 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}, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "High-resolution crystal structure of the eukaryotic HMP-P synthase (THIC) from Arabidopsis thaliana.", "journal": "J. Struct. Biol.", "date": "2013", "authors": "Coquille Sandrine, Roux C\u00e9line, Mehta Angad, Begley Tadhg P, Fitzpatrick Teresa B, Thore St\u00e9phane", "reference": { "type": "PubMed", "id": "24161603", "url": "https://pubmed.ncbi.nlm.nih.gov/24161603" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O82392-1", "protein_name": "Phosphomethylpyrimidine synthase, chloroplastic", "gene_name": "THIC", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O82392", "url": "https://www.uniprot.org/uniprotkb/O82392" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.24161603", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Conversion of a plant oxidosqualene-cycloartenol synthase to an oxidosqualene-lanosterol cyclase by random mutagenesis.", "journal": "Biochemistry", "date": "2002-07-02", "authors": "Wu Tung-Kung, Griffin John H", "reference": { "type": "PubMed", "id": "12081472", "url": "https://pubmed.ncbi.nlm.nih.gov/12081472" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P38605-1", "protein_name": "Cycloartenol synthase", "gene_name": "CAS1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P38605", "url": "https://www.uniprot.org/uniprotkb/P38605" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "mutagenesis": [ { "start_pos": 410, "end_pos": 410, "sequence_org": "Y", "sequence_mut": "C", "comment": "Produces lanosterol instead of cycloartenol.", "evidence": [ { "database": "UniProtKB", "id": "P38605", "url": "https://www.uniprot.org/uniprotkb/P38605" }, { "database": "PubMed", "id": "12081472", "url": "https://pubmed.ncbi.nlm.nih.gov/12081472" }, { "database": "PubMed", "id": "15515077", "url": "https://pubmed.ncbi.nlm.nih.gov/15515077" } ], "uniprot_canonical_ac": "P38605-1" }, { "start_pos": 410, "end_pos": 410, "sequence_org": "Y", "sequence_mut": "T", "comment": "Produces 65% lanosterol, 2% parkeol and 33% 9beta-delta7-lanosterol instead of cycloartenol. Produces 75% lanosterol, 0.6% parkeol and 24% 9beta-delta7-lanosterol instead of cycloartenol; when associated with V-481. Produces 75% lanosterol and 24% 9beta-delta7-lanosterol instead of cycloartenol; when associated with N-477 or Q-477 and V-481.", "evidence": [ { "database": "UniProtKB", "id": "P38605", "url": "https://www.uniprot.org/uniprotkb/P38605" }, { "database": "PubMed", "id": "12081472", "url": "https://pubmed.ncbi.nlm.nih.gov/12081472" }, { "database": "PubMed", "id": "15515077", "url": "https://pubmed.ncbi.nlm.nih.gov/15515077" } ], "uniprot_canonical_ac": "P38605-1" }, { "start_pos": 469, "end_pos": 469, "sequence_org": "A", "sequence_mut": "V", "comment": "Produces lanosterol and achilleol A instead of cycloartenol.", "evidence": [ { "database": "UniProtKB", "id": "P38605", "url": "https://www.uniprot.org/uniprotkb/P38605" }, { "database": "PubMed", "id": "12081472", "url": "https://pubmed.ncbi.nlm.nih.gov/12081472" } ], "uniprot_canonical_ac": "P38605-1" }, { "start_pos": 477, "end_pos": 477, "sequence_org": "H", "sequence_mut": "N", "comment": "Produces 88% lanosterol and 12% parkeol instead of cycloartenol. Produces 75% lanosterol and 24% 9beta-delta7-lanosterol instead of cycloartenol; when associated with T-410 and V-481.", "evidence": [ { "database": "UniProtKB", "id": "P38605", "url": "https://www.uniprot.org/uniprotkb/P38605" }, { "database": "PubMed", "id": "12081472", "url": "https://pubmed.ncbi.nlm.nih.gov/12081472" }, { "database": "PubMed", "id": "12465912", "url": "https://pubmed.ncbi.nlm.nih.gov/12465912" }, { "database": "PubMed", "id": "15515077", "url": "https://pubmed.ncbi.nlm.nih.gov/15515077" } ], "uniprot_canonical_ac": "P38605-1" }, { "start_pos": 477, "end_pos": 477, "sequence_org": "H", "sequence_mut": "Q", "comment": "Produces 22% lanosterol, 73% parkeol and 5% 9beta-delta7-lanosterol instead of cycloartenol. Produces 75% lanosterol and 24% 9beta-delta7-lanosterol instead of cycloartenol; when associated with T-410 and V-481.", "evidence": [ { "database": "UniProtKB", "id": "P38605", "url": "https://www.uniprot.org/uniprotkb/P38605" }, { "database": "PubMed", "id": "12081472", "url": "https://pubmed.ncbi.nlm.nih.gov/12081472" }, { "database": "PubMed", "id": "12465912", "url": "https://pubmed.ncbi.nlm.nih.gov/12465912" }, { "database": "PubMed", "id": "15515077", "url": "https://pubmed.ncbi.nlm.nih.gov/15515077" } ], "uniprot_canonical_ac": "P38605-1" }, { "start_pos": 477, "end_pos": 477, "sequence_org": "H", "sequence_mut": "Y", "comment": "Produces lanosterol instead of cycloartenol.", "evidence": [ { "database": "UniProtKB", "id": "P38605", "url": "https://www.uniprot.org/uniprotkb/P38605" }, { "database": "PubMed", "id": "12081472", "url": "https://pubmed.ncbi.nlm.nih.gov/12081472" }, { "database": "PubMed", "id": "12465912", "url": "https://pubmed.ncbi.nlm.nih.gov/12465912" }, { "database": "PubMed", "id": "15515077", "url": "https://pubmed.ncbi.nlm.nih.gov/15515077" } ], "uniprot_canonical_ac": "P38605-1" }, { "start_pos": 481, "end_pos": 481, "sequence_org": "I", "sequence_mut": "T", "comment": "Produces lanosterol and achilleol A instead of cycloartenol.", "evidence": [ { "database": "UniProtKB", "id": "P38605", "url": "https://www.uniprot.org/uniprotkb/P38605" }, { "database": "PubMed", "id": "12081472", "url": "https://pubmed.ncbi.nlm.nih.gov/12081472" }, { "database": "PubMed", "id": "15515077", "url": "https://pubmed.ncbi.nlm.nih.gov/15515077" } ], "uniprot_canonical_ac": "P38605-1" }, { "start_pos": 481, "end_pos": 481, "sequence_org": "I", "sequence_mut": "V", "comment": "Produces 24% lanosterol, 20% parkeol and 56% cycloartenol. Produces 75% lanosterol, 0.6% parkeol and 24% 9beta-delta7-lanosterol instead of cycloartenol; when associated with T-410.", "evidence": [ { "database": "UniProtKB", "id": "P38605", "url": "https://www.uniprot.org/uniprotkb/P38605" }, { "database": "PubMed", "id": "12081472", "url": "https://pubmed.ncbi.nlm.nih.gov/12081472" }, { "database": "PubMed", "id": "15515077", "url": "https://pubmed.ncbi.nlm.nih.gov/15515077" } ], "uniprot_canonical_ac": "P38605-1" }, { "start_pos": 532, "end_pos": 532, "sequence_org": "Y", "sequence_mut": "H", "comment": "Produces lanosterol and achilleol A instead of cycloartenol.", "evidence": [ { "database": "UniProtKB", "id": "P38605", "url": "https://www.uniprot.org/uniprotkb/P38605" }, { "database": "PubMed", "id": "12081472", "url": "https://pubmed.ncbi.nlm.nih.gov/12081472" } ], "uniprot_canonical_ac": "P38605-1" } ], "record_id": "pubmed.12081472", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Directed evolution experiments reveal mutations at cycloartenol synthase residue His477 that dramatically alter catalysis.", "journal": "Organic letters", "date": "2002-12-12", "authors": "Segura Michael J R, Lodeiro Silvia, Meyer Michelle M, Patel Akash J, Matsuda Seiichi P T", "reference": { "type": "PubMed", "id": "12465912", "url": "https://pubmed.ncbi.nlm.nih.gov/12465912" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P38605-1", "protein_name": "Cycloartenol synthase", "gene_name": "CAS1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P38605", "url": "https://www.uniprot.org/uniprotkb/P38605" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "mutagenesis": [ { "start_pos": 477, "end_pos": 477, "sequence_org": "H", "sequence_mut": "N", "comment": "Produces 88% lanosterol and 12% parkeol instead of cycloartenol. Produces 75% lanosterol and 24% 9beta-delta7-lanosterol instead of cycloartenol; when associated with T-410 and V-481.", "evidence": [ { "database": "UniProtKB", "id": "P38605", "url": "https://www.uniprot.org/uniprotkb/P38605" }, { "database": "PubMed", "id": "12081472", "url": "https://pubmed.ncbi.nlm.nih.gov/12081472" }, { "database": "PubMed", "id": "12465912", "url": "https://pubmed.ncbi.nlm.nih.gov/12465912" }, { "database": "PubMed", "id": "15515077", "url": "https://pubmed.ncbi.nlm.nih.gov/15515077" } ], "uniprot_canonical_ac": "P38605-1" }, { "start_pos": 477, "end_pos": 477, "sequence_org": "H", "sequence_mut": "Q", "comment": "Produces 22% lanosterol, 73% parkeol and 5% 9beta-delta7-lanosterol instead of cycloartenol. Produces 75% lanosterol and 24% 9beta-delta7-lanosterol instead of cycloartenol; when associated with T-410 and V-481.", "evidence": [ { "database": "UniProtKB", "id": "P38605", "url": "https://www.uniprot.org/uniprotkb/P38605" }, { "database": "PubMed", "id": "12081472", "url": "https://pubmed.ncbi.nlm.nih.gov/12081472" }, { "database": "PubMed", "id": "12465912", "url": "https://pubmed.ncbi.nlm.nih.gov/12465912" }, { "database": "PubMed", "id": "15515077", "url": "https://pubmed.ncbi.nlm.nih.gov/15515077" } ], "uniprot_canonical_ac": "P38605-1" }, { "start_pos": 477, "end_pos": 477, "sequence_org": "H", "sequence_mut": "Y", "comment": "Produces lanosterol instead of cycloartenol.", "evidence": [ { "database": "UniProtKB", "id": "P38605", "url": "https://www.uniprot.org/uniprotkb/P38605" }, { "database": "PubMed", "id": "12081472", "url": "https://pubmed.ncbi.nlm.nih.gov/12081472" }, { "database": "PubMed", "id": "12465912", "url": "https://pubmed.ncbi.nlm.nih.gov/12465912" }, { 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[] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Oxidosqualene cyclase second-sphere residues profoundly influence the product profile.", "journal": "Chembiochem : a European journal of chemical biology", "date": "2004-11-05", "authors": "Lodeiro Silvia, Segura Michael J R, Stahl Martin, Schulz-Gasch Tanja, Matsuda Seiichi P T", "reference": { "type": "PubMed", "id": "15515077", "url": "https://pubmed.ncbi.nlm.nih.gov/15515077" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P38605-1", "protein_name": "Cycloartenol synthase", "gene_name": "CAS1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P38605", "url": "https://www.uniprot.org/uniprotkb/P38605" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "mutagenesis": [ { "start_pos": 410, "end_pos": 410, "sequence_org": "Y", "sequence_mut": "C", "comment": "Produces lanosterol instead of cycloartenol.", "evidence": [ { "database": "UniProtKB", "id": "P38605", "url": "https://www.uniprot.org/uniprotkb/P38605" }, { "database": "PubMed", "id": "12081472", "url": "https://pubmed.ncbi.nlm.nih.gov/12081472" }, { "database": "PubMed", "id": "15515077", "url": "https://pubmed.ncbi.nlm.nih.gov/15515077" } ], "uniprot_canonical_ac": "P38605-1" }, { "start_pos": 410, "end_pos": 410, "sequence_org": "Y", "sequence_mut": "T", "comment": "Produces 65% lanosterol, 2% parkeol and 33% 9beta-delta7-lanosterol instead of cycloartenol. Produces 75% lanosterol, 0.6% parkeol and 24% 9beta-delta7-lanosterol instead of cycloartenol; when associated with V-481. Produces 75% lanosterol and 24% 9beta-delta7-lanosterol instead of cycloartenol; when associated with N-477 or Q-477 and V-481.", "evidence": [ { "database": "UniProtKB", "id": "P38605", "url": "https://www.uniprot.org/uniprotkb/P38605" }, { "database": "PubMed", "id": "12081472", "url": "https://pubmed.ncbi.nlm.nih.gov/12081472" }, { "database": "PubMed", "id": "15515077", "url": "https://pubmed.ncbi.nlm.nih.gov/15515077" } ], "uniprot_canonical_ac": "P38605-1" }, { "start_pos": 477, "end_pos": 477, "sequence_org": "H", "sequence_mut": "N", "comment": "Produces 88% lanosterol and 12% parkeol instead of cycloartenol. Produces 75% lanosterol and 24% 9beta-delta7-lanosterol instead of cycloartenol; when associated with T-410 and V-481.", "evidence": [ { "database": "UniProtKB", "id": "P38605", "url": "https://www.uniprot.org/uniprotkb/P38605" }, { "database": "PubMed", "id": "12081472", "url": "https://pubmed.ncbi.nlm.nih.gov/12081472" }, { "database": "PubMed", "id": "12465912", "url": "https://pubmed.ncbi.nlm.nih.gov/12465912" }, { "database": "PubMed", "id": "15515077", "url": "https://pubmed.ncbi.nlm.nih.gov/15515077" } ], "uniprot_canonical_ac": "P38605-1" }, { "start_pos": 477, "end_pos": 477, "sequence_org": "H", "sequence_mut": "Q", "comment": "Produces 22% lanosterol, 73% parkeol and 5% 9beta-delta7-lanosterol instead of cycloartenol. Produces 75% lanosterol and 24% 9beta-delta7-lanosterol instead of cycloartenol; when associated with T-410 and V-481.", "evidence": [ { "database": "UniProtKB", "id": "P38605", "url": "https://www.uniprot.org/uniprotkb/P38605" }, { "database": "PubMed", "id": "12081472", "url": "https://pubmed.ncbi.nlm.nih.gov/12081472" }, { "database": "PubMed", "id": "12465912", "url": "https://pubmed.ncbi.nlm.nih.gov/12465912" }, { "database": "PubMed", "id": "15515077", "url": "https://pubmed.ncbi.nlm.nih.gov/15515077" } ], "uniprot_canonical_ac": "P38605-1" }, { "start_pos": 477, "end_pos": 477, "sequence_org": "H", "sequence_mut": "Y", "comment": "Produces lanosterol instead of cycloartenol.", "evidence": [ { "database": "UniProtKB", "id": "P38605", "url": "https://www.uniprot.org/uniprotkb/P38605" }, { "database": "PubMed", "id": "12081472", "url": "https://pubmed.ncbi.nlm.nih.gov/12081472" }, { "database": "PubMed", "id": "12465912", "url": "https://pubmed.ncbi.nlm.nih.gov/12465912" }, { "database": "PubMed", "id": "15515077", "url": "https://pubmed.ncbi.nlm.nih.gov/15515077" } ], "uniprot_canonical_ac": "P38605-1" }, { "start_pos": 481, "end_pos": 481, "sequence_org": "I", "sequence_mut": "T", "comment": "Produces lanosterol and achilleol A instead of cycloartenol.", "evidence": [ { "database": "UniProtKB", "id": "P38605", "url": "https://www.uniprot.org/uniprotkb/P38605" }, { "database": "PubMed", "id": "12081472", "url": "https://pubmed.ncbi.nlm.nih.gov/12081472" }, { "database": "PubMed", "id": "15515077", "url": "https://pubmed.ncbi.nlm.nih.gov/15515077" } ], "uniprot_canonical_ac": "P38605-1" }, { "start_pos": 481, "end_pos": 481, "sequence_org": "I", "sequence_mut": "V", "comment": "Produces 24% lanosterol, 20% parkeol and 56% cycloartenol. Produces 75% lanosterol, 0.6% parkeol and 24% 9beta-delta7-lanosterol instead of cycloartenol; when associated with T-410.", "evidence": [ { "database": "UniProtKB", "id": "P38605", "url": "https://www.uniprot.org/uniprotkb/P38605" }, { "database": "PubMed", "id": "12081472", "url": "https://pubmed.ncbi.nlm.nih.gov/12081472" }, { "database": "PubMed", "id": "15515077", "url": "https://pubmed.ncbi.nlm.nih.gov/15515077" } ], "uniprot_canonical_ac": "P38605-1" } ], "record_id": "pubmed.15515077", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", 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Loss of interaction with VPS9A.", "evidence": [ { "database": "UniProtKB", "id": "P31582", "url": "https://www.uniprot.org/uniprotkb/P31582" }, { "database": "PubMed", "id": "15509844", "url": "https://pubmed.ncbi.nlm.nih.gov/15509844" }, { "database": "PubMed", "id": "18055610", "url": "https://pubmed.ncbi.nlm.nih.gov/18055610" } ], "uniprot_canonical_ac": "P31582-1" } ], "record_id": "pubmed.15509844", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Two plant-viral movement proteins traffic in the endocytic recycling pathway.", "journal": "Plant Cell", "date": "2005", "authors": "Haupt Sophie, Cowan Graham H, Ziegler Angelika, Roberts Alison G, Oparka Karl J, Torrance Lesley", "reference": { "type": "PubMed", "id": "15608333", "url": "https://pubmed.ncbi.nlm.nih.gov/15608333" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9SN68-1", "protein_name": "Ras-related protein RABF2b", "gene_name": "ARA7; 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Loss of interaction with MON1. Loss of interaction with EREX.", "evidence": [ { "database": "UniProtKB", "id": "Q9SN68", "url": "https://www.uniprot.org/uniprotkb/Q9SN68" }, { "database": "PubMed", "id": "20833725", "url": "https://pubmed.ncbi.nlm.nih.gov/20833725" }, { "database": "PubMed", "id": "27288222", "url": "https://pubmed.ncbi.nlm.nih.gov/27288222" }, { "database": "PubMed", "id": "24824487", "url": "https://pubmed.ncbi.nlm.nih.gov/24824487" } ], "uniprot_canonical_ac": "Q9SN68-1" }, { "start_pos": 24, "end_pos": 24, "sequence_org": "S", "sequence_mut": "N", "comment": "Dominant negative (GDP-bound form); no effect on the interaction with VPS9A.", "evidence": [ { "database": "UniProtKB", "id": "Q9SN68", "url": "https://www.uniprot.org/uniprotkb/Q9SN68" }, { "database": "PubMed", "id": "20833725", "url": "https://pubmed.ncbi.nlm.nih.gov/20833725" } ], "uniprot_canonical_ac": "Q9SN68-1" }, { "start_pos": 36, "end_pos": 36, "sequence_org": "V", "sequence_mut": "P", "comment": "No effect on the interaction with VPS9A.", "evidence": [ { "database": "UniProtKB", "id": "Q9SN68", "url": "https://www.uniprot.org/uniprotkb/Q9SN68" }, { "database": "PubMed", "id": "20833725", "url": "https://pubmed.ncbi.nlm.nih.gov/20833725" } ], "uniprot_canonical_ac": "Q9SN68-1" }, { "start_pos": 42, "end_pos": 42, "sequence_org": "T", "sequence_mut": "A", "comment": "No effect on the interaction with VPS9A.", "evidence": [ { "database": "UniProtKB", "id": "Q9SN68", "url": "https://www.uniprot.org/uniprotkb/Q9SN68" }, { "database": "PubMed", "id": "20833725", "url": "https://pubmed.ncbi.nlm.nih.gov/20833725" } ], "uniprot_canonical_ac": "Q9SN68-1" }, { "start_pos": 44, "end_pos": 44, "sequence_org": "G", "sequence_mut": "P", "comment": "No effect on the interaction with VPS9A.", "evidence": [ { "database": "UniProtKB", "id": "Q9SN68", "url": "https://www.uniprot.org/uniprotkb/Q9SN68" }, { "database": "PubMed", "id": "20833725", "url": "https://pubmed.ncbi.nlm.nih.gov/20833725" } ], "uniprot_canonical_ac": "Q9SN68-1" }, { "start_pos": 46, "end_pos": 46, "sequence_org": "A", "sequence_mut": "D", "comment": "Loss of interaction with VPS9A.", "evidence": [ { "database": "UniProtKB", "id": "Q9SN68", "url": "https://www.uniprot.org/uniprotkb/Q9SN68" }, { "database": "PubMed", "id": "20833725", "url": "https://pubmed.ncbi.nlm.nih.gov/20833725" } ], "uniprot_canonical_ac": "Q9SN68-1" }, { "start_pos": 47, "end_pos": 47, "sequence_org": "F", "sequence_mut": "A", "comment": "Loss of interaction with VPS9A.", "evidence": [ { "database": "UniProtKB", "id": "Q9SN68", "url": "https://www.uniprot.org/uniprotkb/Q9SN68" }, { "database": "PubMed", "id": "20833725", "url": "https://pubmed.ncbi.nlm.nih.gov/20833725" } ], "uniprot_canonical_ac": "Q9SN68-1" }, { "start_pos": 64, "end_pos": 64, "sequence_org": "W", "sequence_mut": "A", "comment": "Loss of interaction with VPS9A.", "evidence": [ { "database": "UniProtKB", "id": "Q9SN68", "url": "https://www.uniprot.org/uniprotkb/Q9SN68" }, { "database": "PubMed", "id": "20833725", "url": "https://pubmed.ncbi.nlm.nih.gov/20833725" } ], "uniprot_canonical_ac": "Q9SN68-1" }, { "start_pos": 67, "end_pos": 67, "sequence_org": "A", "sequence_mut": "G", "comment": "Loss of interaction with VPS9A.", "evidence": [ { "database": "UniProtKB", "id": "Q9SN68", "url": "https://www.uniprot.org/uniprotkb/Q9SN68" }, { "database": "PubMed", "id": "20833725", "url": "https://pubmed.ncbi.nlm.nih.gov/20833725" } ], "uniprot_canonical_ac": "Q9SN68-1" }, { "start_pos": 69, "end_pos": 69, "sequence_org": "Q", "sequence_mut": "E", "comment": "Loss of interaction with VPS9A.", "evidence": [ { "database": "UniProtKB", "id": "Q9SN68", "url": "https://www.uniprot.org/uniprotkb/Q9SN68" }, { "database": "PubMed", "id": "11532937", "url": "https://pubmed.ncbi.nlm.nih.gov/11532937" }, { "database": "PubMed", "id": "20833725", "url": "https://pubmed.ncbi.nlm.nih.gov/20833725" } ], "uniprot_canonical_ac": "Q9SN68-1" }, { "start_pos": 69, "end_pos": 69, "sequence_org": "Q", "sequence_mut": "L", "comment": "Constitutively active (GTP-bound form); loss of targeting to plasma membrane and interaction with VPS9A.", "evidence": [ { "database": "UniProtKB", "id": "Q9SN68", "url": "https://www.uniprot.org/uniprotkb/Q9SN68" }, { "database": "PubMed", "id": "11532937", "url": "https://pubmed.ncbi.nlm.nih.gov/11532937" }, { "database": "PubMed", "id": "20833725", "url": "https://pubmed.ncbi.nlm.nih.gov/20833725" } ], "uniprot_canonical_ac": "Q9SN68-1" }, { "start_pos": 74, "end_pos": 74, "sequence_org": "S", "sequence_mut": "A", "comment": "Loss of interaction with VPS9A.", "evidence": [ { "database": "UniProtKB", "id": "Q9SN68", "url": "https://www.uniprot.org/uniprotkb/Q9SN68" }, { "database": "PubMed", "id": "20833725", "url": "https://pubmed.ncbi.nlm.nih.gov/20833725" } ], "uniprot_canonical_ac": "Q9SN68-1" }, { "start_pos": 75, "end_pos": 75, "sequence_org": "L", "sequence_mut": "A", "comment": "Loss of interaction with VPS9A.", "evidence": [ { "database": "UniProtKB", "id": "Q9SN68", "url": "https://www.uniprot.org/uniprotkb/Q9SN68" }, { "database": "PubMed", "id": "20833725", "url": "https://pubmed.ncbi.nlm.nih.gov/20833725" } ], "uniprot_canonical_ac": "Q9SN68-1" }, { "start_pos": 78, "end_pos": 78, "sequence_org": "M", "sequence_mut": "A", "comment": "Loss of interaction with VPS9A.", "evidence": [ { "database": "UniProtKB", "id": "Q9SN68", "url": "https://www.uniprot.org/uniprotkb/Q9SN68" }, { "database": "PubMed", "id": "20833725", "url": "https://pubmed.ncbi.nlm.nih.gov/20833725" } ], "uniprot_canonical_ac": "Q9SN68-1" }, { "start_pos": 79, "end_pos": 79, "sequence_org": "Y", "sequence_mut": "A", "comment": "Loss of interaction with VPS9A.", "evidence": [ { "database": "UniProtKB", "id": "Q9SN68", "url": "https://www.uniprot.org/uniprotkb/Q9SN68" }, { "database": "PubMed", "id": "20833725", "url": "https://pubmed.ncbi.nlm.nih.gov/20833725" } ], "uniprot_canonical_ac": "Q9SN68-1" }, { "start_pos": 184, "end_pos": 184, "sequence_org": "A", "sequence_mut": "K", "comment": "Loss of interaction with RABF2B.", "evidence": [ { "database": "UniProtKB", "id": "Q9LT31", "url": "https://www.uniprot.org/uniprotkb/Q9LT31" }, { "database": "PubMed", "id": "20833725", "url": "https://pubmed.ncbi.nlm.nih.gov/20833725" } ], "uniprot_canonical_ac": "Q9LT31-1" }, { "start_pos": 185, "end_pos": 185, "sequence_org": "D", "sequence_mut": "A", "comment": "Loss of interaction with RABF2B. 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D", "date": "2013", "authors": "Uejima Tamami, Ihara Kentaro, Sunada Mariko, Kawasaki Masato, Ueda Takashi, Kato Ryuichi, Nakano Akihiko, Wakatsuki Soichi", "reference": { "type": "PubMed", "id": "23519409", "url": "https://pubmed.ncbi.nlm.nih.gov/23519409" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9SN68-1", "protein_name": "Ras-related protein RABF2b", "gene_name": "ARA7; RABF2B", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9SN68", "url": "https://www.uniprot.org/uniprotkb/Q9SN68" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.23519409", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } 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Biol.", "date": "2004", "authors": "Li Hong-Ye, Chye Mee-Len", "reference": { "type": "PubMed", "id": "15159625", "url": "https://pubmed.ncbi.nlm.nih.gov/15159625" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9STP8-1", "protein_name": "Acyl-CoA-binding domain-containing protein 2", "gene_name": "ACBP2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P42736-1", "protein_name": "Ethylene-responsive transcription factor RAP2-3", "gene_name": "RAP2-3", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9STP8", "url": "https://www.uniprot.org/uniprotkb/Q9STP8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.15159625", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { 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"Abolishes the speckles localization in the nucleus possibly due to the absence of sumoylation at this residue.", "evidence": [ { "database": "UniProtKB", "id": "Q9M0K4", "url": "https://www.uniprot.org/uniprotkb/Q9M0K4" }, { "database": "PubMed", "id": "11581165", "url": "https://pubmed.ncbi.nlm.nih.gov/11581165" } ], "uniprot_canonical_ac": "Q9M0K4-1" } ], "record_id": "pubmed.11581165", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { 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"authors": "Chevalier C, Yamaguchi J, McCourt P", "reference": { "type": "PubMed", "id": "16669103", "url": "https://pubmed.ncbi.nlm.nih.gov/16669103" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P25819-1", "protein_name": "Catalase-2", "gene_name": "CAT2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P25819", "url": "https://www.uniprot.org/uniprotkb/P25819" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.16669103", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A chaperone function of NO CATALASE ACTIVITY1 is required to maintain catalase activity and for multiple stress responses in Arabidopsis.", "journal": "Plant Cell", "date": "2015", "authors": "Li Jing, Liu Juntao, Wang Guoqiang, Cha Joon-Yung, Li Guannan, Chen She, Li Zhen, Guo Jinghua, Zhang Caiguo, Yang Yongqing, Kim Woe-Yeon, Yun Dae-Jin, Schumaker Karen S, Chen Zhongzhou, Guo Yan", "reference": { "type": "PubMed", "id": "25700484", "url": "https://pubmed.ncbi.nlm.nih.gov/25700484" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P25819-1", 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Plant", "date": "2015", "authors": "P\u00e9rez-Ruiz Rigoberto V, Garc\u00eda-Ponce Berenice, Marsch-Mart\u00ednez Nayelli, Ugartechea-Chirino Yamel, Villajuana-Bonequi Mitzi, de Folter Stefan, Azpeitia Eugenio, D\u00e1vila-Velderrain Jos\u00e9, Cruz-S\u00e1nchez David, Garay-Arroyo Adriana, S\u00e1nchez Mar\u00eda de la Paz, Est\u00e9vez-Palmas Juan M, \u00c1lvarez-Buylla Elena R", "reference": { "type": "PubMed", "id": "25636918", "url": "https://pubmed.ncbi.nlm.nih.gov/25636918" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q38838-1", "protein_name": "Agamous-like MADS-box protein AGL14", "gene_name": "AGL14", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q38838", "url": "https://www.uniprot.org/uniprotkb/Q38838" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": 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"The Arabidopsis thaliana isogene NIT4 and its orthologs in tobacco encode beta-cyano-L-alanine hydratase/nitrilase.", "journal": "The Journal of biological chemistry", "date": "2001-01-26", "authors": "Piotrowski M, Sch\u00f6nfelder S, Weiler E W", "reference": { "type": "PubMed", "id": "11060302", "url": "https://pubmed.ncbi.nlm.nih.gov/11060302" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P46011-1", "protein_name": "Bifunctional nitrilase/nitrile hydratase NIT4", "gene_name": "NIT4", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P46011", "url": "https://www.uniprot.org/uniprotkb/P46011" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "mutagenesis": [ { "start_pos": 197, "end_pos": 197, "sequence_org": "C", "sequence_mut": "A", "comment": "Loss of nitrilase activity and 95% 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Biol.", "date": "2019", "authors": "Mulelu Andani E, Kirykowicz Angela M, Woodward Jeremy D", "reference": { "type": "PubMed", "id": "31341959", "url": "https://pubmed.ncbi.nlm.nih.gov/31341959" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P46011-1", "protein_name": "Bifunctional nitrilase/nitrile hydratase NIT4", "gene_name": "NIT4", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P46011", "url": "https://www.uniprot.org/uniprotkb/P46011" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.31341959", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", 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