[ { "title": "ATG8 family proteins act as scaffolds for assembly of the ULK complex: sequence requirements for LC3-interacting region (LIR) motifs.", "journal": "J. Biol. Chem.", "date": "2012", "authors": "Alemu Endalkachew Ashenafi, Lamark Trond, Torgersen Knut Martin, Birgisdottir Aasa Birna, Larsen Kenneth Bowitz, Jain Ashish, Olsvik Hallvard, \u00d8vervatn Aud, Kirkin Vladimir, Johansen Terje", "reference": { "type": "PubMed", "id": "23043107", "url": "https://pubmed.ncbi.nlm.nih.gov/23043107" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9H0R8-1", "protein_name": "Gamma-aminobutyric acid receptor-associated protein-like 1", "gene_name": "GABARAPL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95166-1", "protein_name": "Gamma-aminobutyric acid receptor-associated protein", "gene_name": "GABARAP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H492-1", "protein_name": "Microtubule-associated protein 1 light chain 3 alpha", "gene_name": "MAP1LC3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75143-1", "protein_name": "Autophagy-related protein 13", "gene_name": "ATG13", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60520-1", "protein_name": "Gamma-aminobutyric acid receptor-associated protein-like 2", "gene_name": "GABARAPL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TDY2-1", "protein_name": "RB1-inducible coiled-coil protein 1", "gene_name": "RB1CC1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9H0R8", "url": "https://www.uniprot.org/uniprotkb/Q9H0R8" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.23043107", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], 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"sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The Legionella effector RavZ inhibits host autophagy through irreversible Atg8 deconjugation.", "journal": "Science (New York, N.Y.)", "date": "2012", "authors": "Choy A, Dancourt J, Mugo B, O'Connor TJ, Isberg RR, Melia TJ, Roy CR", "reference": { "type": "PubMed", "id": "23112293", "url": "https://pubmed.ncbi.nlm.nih.gov/23112293" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9H0R8-1", "protein_name": "Gamma-aminobutyric acid receptor-associated protein-like 1", "gene_name": "GABARAPL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H492-1", "protein_name": "Microtubule-associated protein 1 light chain 3 alpha", "gene_name": "MAP1LC3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXW4-1", "protein_name": "Microtubule-associated protein 1 light chain 3 gamma", "gene_name": "MAP1LC3C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9GZQ8-1", "protein_name": "Microtubule-associated protein 1 light chain 3 beta", "gene_name": "MAP1LC3B", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9H0R8", "url": "https://www.uniprot.org/uniprotkb/Q9H0R8" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.23112293", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": 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"n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Specific distribution of the autophagic protein GABARAPL1/GEC1 in the developing and adult mouse brain and identification of neuronal populations expressing GABARAPL1/GEC1.", "journal": "PLoS ONE", "date": "2013", "authors": "Le Grand JN, Bon K, Fraichard A, Zhang J, Jouvenot M, Risold PY, Boyer-Guittaut M, Delage-Mourroux R", "reference": { "type": "PubMed", "id": "23690988", "url": "https://pubmed.ncbi.nlm.nih.gov/23690988" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9H0R8-1", "protein_name": "Gamma-aminobutyric acid receptor-associated protein-like 1", "gene_name": "GABARAPL1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9H0R8", "url": "https://www.uniprot.org/uniprotkb/Q9H0R8" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.23690988", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Structural determinants in GABARAP required for the selective binding and recruitment of ALFY to LC3B-positive structures.", "journal": "EMBO Rep.", "date": "2014", "authors": "Lystad AH, Ichimura Y, Takagi K, Yang Y, Pankiv S, Kanegae Y, Kageyama S, Suzuki M, Saito I, Mizushima T, Komatsu M, Simonsen A", "reference": { "type": "PubMed", "id": "24668264", "url": "https://pubmed.ncbi.nlm.nih.gov/24668264" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9H0R8-1", "protein_name": "Gamma-aminobutyric acid receptor-associated protein-like 1", "gene_name": "GABARAPL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95166-1", "protein_name": "Gamma-aminobutyric acid receptor-associated protein", "gene_name": "GABARAP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IZQ1-1", 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when associated with A-3343 and A-3344.", "evidence": [ { "database": "UniProtKB", "id": "Q8IZQ1", "url": "https://www.uniprot.org/uniprotkb/Q8IZQ1" }, { "database": "PubMed", "id": "24668264", "url": "https://pubmed.ncbi.nlm.nih.gov/24668264" } ], "uniprot_canonical_ac": "Q8IZQ1-1" }, { "start_pos": 26, "end_pos": 26, "sequence_org": "Q", "sequence_mut": "K", "comment": "Increased interaction with WDFY3/ALFY, no effect on SQSTM1-binding; when associated with Y-27 and D-57.", "evidence": [ { "database": "UniProtKB", "id": "Q9GZQ8", "url": "https://www.uniprot.org/uniprotkb/Q9GZQ8" }, { "database": "PubMed", "id": "24668264", "url": "https://pubmed.ncbi.nlm.nih.gov/24668264" } ], "uniprot_canonical_ac": "Q9GZQ8-1" }, { "start_pos": 27, "end_pos": 27, "sequence_org": "H", "sequence_mut": "Y", "comment": "Increased interaction with WDFY3/ALFY, no effect on SQSTM1-binding; when associated with K-26 and D-57.", "evidence": [ { "database": "UniProtKB", "id": "Q9GZQ8", "url": "https://www.uniprot.org/uniprotkb/Q9GZQ8" }, { "database": "PubMed", "id": "24668264", "url": "https://pubmed.ncbi.nlm.nih.gov/24668264" } ], "uniprot_canonical_ac": "Q9GZQ8-1" }, { "start_pos": 57, "end_pos": 57, "sequence_org": "H", "sequence_mut": "D", "comment": "Increased interaction with WDFY3/ALFY, no effect on SQSTM1-binding; when associated with K-26 and Y-27.", "evidence": [ { "database": "UniProtKB", "id": "Q9GZQ8", "url": "https://www.uniprot.org/uniprotkb/Q9GZQ8" }, { "database": "PubMed", "id": "24668264", "url": "https://pubmed.ncbi.nlm.nih.gov/24668264" } ], "uniprot_canonical_ac": "Q9GZQ8-1" }, { "start_pos": 338, "end_pos": 338, "sequence_org": "W", "sequence_mut": "A", "comment": "Strong decrease in MAP1LC3B-binding, disrupts interaction with GABARAP.", "evidence": [ { "database": "UniProtKB", "id": "Q13501", "url": "https://www.uniprot.org/uniprotkb/Q13501" }, { "database": "PubMed", "id": "24668264", "url": "https://pubmed.ncbi.nlm.nih.gov/24668264" }, { "database": "PubMed", "id": "17580304", "url": "https://pubmed.ncbi.nlm.nih.gov/17580304" } ], "uniprot_canonical_ac": "Q13501-1" } ], "record_id": "pubmed.24668264", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "TRIM proteins regulate autophagy and can target autophagic substrates by direct recognition.", "journal": "Dev. Cell", "date": "2014", "authors": "Mandell MA, Jain A, Arko-Mensah J, Chauhan S, Kimura T, Dinkins C, Silvestri G, Munch J, Kirchhoff F, Simonsen A, Wei Y, Levine B, Johansen T, Deretic V", "reference": { "type": "PubMed", "id": "25127057", "url": "https://pubmed.ncbi.nlm.nih.gov/25127057" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9H0R8-1", "protein_name": "Gamma-aminobutyric acid receptor-associated protein-like 1", "gene_name": "GABARAPL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14457-1", "protein_name": "Beclin-1", "gene_name": "BECN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95166-1", "protein_name": "Gamma-aminobutyric acid receptor-associated protein", "gene_name": "GABARAP", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75385-1", "protein_name": "Serine/threonine-protein kinase ULK1", "gene_name": "ULK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H492-1", "protein_name": "Microtubule-associated protein 1 light chain 3 alpha", "gene_name": "MAP1LC3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9C035-1", "protein_name": "Tripartite motif-containing protein 5", "gene_name": "TRIM5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60520-1", "protein_name": "Gamma-aminobutyric acid receptor-associated protein-like 2", "gene_name": "GABARAPL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXW4-1", "protein_name": "Microtubule-associated protein 1 light chain 3 gamma", "gene_name": "MAP1LC3C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13501-1", "protein_name": "Sequestosome-1", "gene_name": "SQSTM1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9H0R8", "url": "https://www.uniprot.org/uniprotkb/Q9H0R8" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.25127057", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 9 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "CUL3-KBTBD6/KBTBD7 ubiquitin ligase cooperates with GABARAP proteins to spatially restrict TIAM1-RAC1 signaling.", "journal": "Mol. 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Cell Biol.", "date": "2015", "authors": "Kimura T, Jain A, Choi SW, Mandell MA, Schroder K, Johansen T, Deretic V", "reference": { "type": "PubMed", "id": "26347139", "url": "https://pubmed.ncbi.nlm.nih.gov/26347139" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9H0R8-1", "protein_name": "Gamma-aminobutyric acid receptor-associated protein-like 1", "gene_name": "GABARAPL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14457-1", "protein_name": "Beclin-1", "gene_name": "BECN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95166-1", "protein_name": "Gamma-aminobutyric acid receptor-associated protein", "gene_name": "GABARAP", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75385-1", "protein_name": "Serine/threonine-protein kinase ULK1", "gene_name": "ULK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H492-1", "protein_name": "Microtubule-associated protein 1 light chain 3 alpha", "gene_name": "MAP1LC3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15553-2", "protein_name": "Pyrin", "gene_name": "MEFV", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9C000-1", "protein_name": "NACHT, LRR and PYD domains-containing protein 1", "gene_name": "NLRP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96P20-1", "protein_name": "NACHT, LRR and PYD domains-containing protein 3", "gene_name": "NLRP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14653-1", "protein_name": "Interferon regulatory factor 3", "gene_name": "IRF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60520-1", "protein_name": "Gamma-aminobutyric acid receptor-associated protein-like 2", "gene_name": "GABARAPL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q676U5-1", "protein_name": "Autophagy-related protein 16-1", "gene_name": "ATG16L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXW4-1", "protein_name": "Microtubule-associated protein 1 light chain 3 gamma", "gene_name": "MAP1LC3C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19474-1", "protein_name": "E3 ubiquitin-protein ligase TRIM21", "gene_name": "TRIM21", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9H0R8", "url": "https://www.uniprot.org/uniprotkb/Q9H0R8" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.26347139", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 13 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Kaposi's Sarcoma-Associated Herpesvirus Viral Interferon Regulatory Factor 1 Interacts with a Member of the Interferon-Stimulated Gene 15 Pathway.", "journal": "J. Virol.", "date": "2015", "authors": "Jacobs Sarah R, Stopford Charles M, West John A, Bennett Christopher L, Giffin Louise, Damania Blossom", "reference": { "type": "PubMed", "id": "26355087", "url": "https://pubmed.ncbi.nlm.nih.gov/26355087" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9H0R8-1", "protein_name": "Gamma-aminobutyric acid receptor-associated protein-like 1", "gene_name": "GABARAPL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UII4-1", "protein_name": "E3 ISG15--protein ligase HERC5", "gene_name": "HERC5", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9H0R8", "url": "https://www.uniprot.org/uniprotkb/Q9H0R8" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.26355087", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Structural and functional analysis of a novel interaction motif within UFM1-activating enzyme 5 (UBA5) required for binding to ubiquitin-like proteins and ufmylation.", "journal": "J. Biol. Chem.", "date": "2016", "authors": "Habisov S, Huber J, Ichimura Y, Akutsu M, Rogova N, Loehr F, McEwan DG, Johansen T, Dikic I, Doetsch V, Komatsu M, Rogov VV, Kirkin V", "reference": { "type": "PubMed", "id": "26929408", "url": "https://pubmed.ncbi.nlm.nih.gov/26929408" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9H0R8-1", "protein_name": "Gamma-aminobutyric acid receptor-associated protein-like 1", "gene_name": "GABARAPL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95166-1", "protein_name": "Gamma-aminobutyric acid receptor-associated protein", "gene_name": "GABARAP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9GZZ9-1", "protein_name": "Ubiquitin-like modifier-activating enzyme 5", "gene_name": "UBA5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60520-1", "protein_name": "Gamma-aminobutyric acid receptor-associated protein-like 2", "gene_name": "GABARAPL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61960-1", 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"https://www.uniprot.org/uniprotkb/Q9GZZ9" }, { "database": "PubMed", "id": "26929408", "url": "https://pubmed.ncbi.nlm.nih.gov/26929408" }, { "database": "PubMed", "id": "30990354", "url": "https://pubmed.ncbi.nlm.nih.gov/30990354" } ], "uniprot_canonical_ac": "Q9GZZ9-1" }, { "start_pos": 346, "end_pos": 346, "sequence_org": "V", "sequence_mut": "A", "comment": "Abolished interaction with UFM1 and decreased interaction with GABARAPL2.", "evidence": [ { "database": "UniProtKB", "id": "Q9GZZ9", "url": "https://www.uniprot.org/uniprotkb/Q9GZZ9" }, { "database": "PubMed", "id": "26929408", "url": "https://pubmed.ncbi.nlm.nih.gov/26929408" }, { "database": "PubMed", "id": "30990354", "url": "https://pubmed.ncbi.nlm.nih.gov/30990354" } ], "uniprot_canonical_ac": "Q9GZZ9-1" } ], "record_id": "pubmed.26929408", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { 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"n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "ATG4B contains a C-terminal LIR motif important for binding and efficient cleavage of mammalian orthologs of yeast Atg8.", "journal": "Autophagy", "date": "2017", "authors": "Skytte Rasmussen M, Mouilleron S, Kumar Shrestha B, Wirth M, Lee R, Bowitz Larsen K, Abudu Princely Y, O'Reilly N, Sjottem E, Tooze SA, Lamark T, Johansen T", "reference": { "type": "PubMed", "id": "28287329", "url": 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Cell Biol.", "date": "2018", "authors": "Kumar Suresh, Jain Ashish, Farzam Farzin, Jia Jingyue, Gu Yuexi, Choi Seong Won, Mudd Michal H, Claude-Taupin Aurore, Wester Michael J, Lidke Keith A, Rusten Tor-Erik, Deretic Vojo", "reference": { "type": "PubMed", "id": "29420192", "url": "https://pubmed.ncbi.nlm.nih.gov/29420192" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9H0R8-1", "protein_name": "Gamma-aminobutyric acid receptor-associated protein-like 1", "gene_name": "GABARAPL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95166-1", "protein_name": "Gamma-aminobutyric acid receptor-associated protein", "gene_name": "GABARAP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H492-1", "protein_name": "Microtubule-associated protein 1 light chain 3 alpha", "gene_name": "MAP1LC3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "A1A4Y4-1", "protein_name": "Immunity-related GTPase family M protein", "gene_name": "IRGM", "tax_name": "Human" }, 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"count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "TEX264 Is an Endoplasmic Reticulum-Resident ATG8-Interacting Protein Critical for ER Remodeling during Nutrient Stress.", "journal": "Molecular cell", "date": "2019", "authors": "An H, Ordureau A, Paulo JA, Shoemaker CJ, Denic V, Harper JW", "reference": { "type": "PubMed", "id": "31006537", "url": "https://pubmed.ncbi.nlm.nih.gov/31006537" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9H0R8-1", "protein_name": "Gamma-aminobutyric acid receptor-associated protein-like 1", "gene_name": "GABARAPL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H492-1", "protein_name": "Microtubule-associated protein 1 light chain 3 alpha", "gene_name": "MAP1LC3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9GZQ8-1", "protein_name": "Microtubule-associated protein 1 light chain 3 beta", "gene_name": "MAP1LC3B", 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"count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { 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"AP1G1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99523-1", "protein_name": "Sortilin", "gene_name": "SORT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84077-1", "protein_name": "ADP-ribosylation factor 1", "gene_name": "ARF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q10567-1", "protein_name": "AP-1 complex subunit beta-1", "gene_name": "AP1B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y587-1", "protein_name": "AP-4 complex subunit sigma-1", "gene_name": "AP4S1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92572-1", "protein_name": "AP-3 complex subunit sigma-1", "gene_name": "AP3S1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPM8-1", "protein_name": "AP-4 complex subunit epsilon-1", "gene_name": "AP4E1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IUQ0-1", "protein_name": "Clavesin-1", "gene_name": "CLVS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5SYC1-1", "protein_name": "Clavesin-2", "gene_name": "CLVS2", 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"O43493-2", "protein_name": "Trans-Golgi network integral membrane protein 2", "gene_name": "TGOLN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13492-1", "protein_name": "Phosphatidylinositol-binding clathrin assembly protein", "gene_name": "PICALM", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q0IIM8-1", "protein_name": "TBC1 domain family member 8B", "gene_name": "TBC1D8B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EC8-1", "protein_name": "Protein YIPF6", "gene_name": "YIPF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q00610-1", "protein_name": "Clathrin heavy chain 1", "gene_name": "CLTC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11142-1", "protein_name": "Heat shock cognate 71 kDa protein", "gene_name": "HSPA8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50570-1", "protein_name": "Dynamin-2", "gene_name": "DNM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49407-1", "protein_name": "Beta-arrestin-1", "gene_name": "ARRB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXS5-1", "protein_name": "AP-1 complex subunit mu-1", "gene_name": "AP1M1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6Q5-1", "protein_name": "AP-1 complex subunit mu-2", "gene_name": "AP1M2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02786-1", "protein_name": "Transferrin receptor protein 1", "gene_name": "TFRC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01968-1", "protein_name": "Inositol polyphosphate 5-phosphatase OCRL", "gene_name": "OCRL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14677-1", "protein_name": "Clathrin interactor 1", "gene_name": "CLINT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02792-1", "protein_name": "Ferritin light chain", "gene_name": "FTL", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60749-1", "protein_name": "Sorting nexin-2", "gene_name": "SNX2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H3P7-1", "protein_name": "Golgi resident protein GCP60", "gene_name": "ACBD3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6QNY0-1", "protein_name": "Biogenesis of lysosome-related organelles complex 1 subunit 3", "gene_name": "BLOC1S3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EV8-1", "protein_name": "Dysbindin", "gene_name": "DTNBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09496-1", "protein_name": "Clathrin light chain A", "gene_name": "CLTA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02794-1", "protein_name": "Ferritin heavy chain", "gene_name": "FTH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14671-1", "protein_name": "Pumilio homolog 1", "gene_name": "PUM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NBS9-1", "protein_name": "Thioredoxin domain-containing protein 5", "gene_name": "TXNDC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16890-1", "protein_name": "Tumor protein D53", "gene_name": "TPD52L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55327-1", "protein_name": "Tumor protein D52", "gene_name": "TPD52", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5HYK7-1", "protein_name": "SH3 domain-containing protein 19", "gene_name": "SH3D19", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75061-1", "protein_name": "Auxilin", "gene_name": "DNAJC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NUP1-1", "protein_name": "Biogenesis of lysosome-related organelles complex 1 subunit 4", "gene_name": "BLOC1S4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09497-1", "protein_name": "Clathrin light chain B", "gene_name": "CLTB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51148-1", "protein_name": "Ras-related protein Rab-5C", "gene_name": "RAB5C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11717-1", "protein_name": "Cation-independent mannose-6-phosphate receptor", "gene_name": "IGF2R", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20645-1", "protein_name": "Cation-dependent mannose-6-phosphate receptor", "gene_name": "M6PR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NC96-1", "protein_name": "Adaptin ear-binding coat-associated protein 1", "gene_name": "NECAP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05067-1", "protein_name": "Amyloid-beta precursor protein", "gene_name": "APP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96PC3-1", "protein_name": "AP-1 complex subunit sigma-3", "gene_name": "AP1S3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14964-1", "protein_name": "Hepatocyte growth factor-regulated tyrosine kinase substrate", "gene_name": "HGS", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99962-1", "protein_name": "Endophilin-A1", "gene_name": "SH3GL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UL45-1", "protein_name": "Biogenesis of lysosome-related organelles complex 1 subunit 6", "gene_name": "BLOC1S6", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P51809", "url": "https://www.uniprot.org/uniprotkb/P51809" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.10394364", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 69 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Direct interaction of STAT4 with the IL-12 receptor.", "journal": "Archives of biochemistry and biophysics", "date": "1999", "authors": "Yao BB, Niu P, Surowy CS, Faltynek CR", "reference": { "type": "PubMed", "id": "10415122", "url": "https://pubmed.ncbi.nlm.nih.gov/10415122" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P51809-1", "protein_name": "Vesicle-associated membrane protein 7", "gene_name": "VAMP7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07237-1", "protein_name": "Protein disulfide-isomerase", "gene_name": "P4HB", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60674-1", "protein_name": "Tyrosine-protein kinase JAK2", "gene_name": "JAK2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29460-1", "protein_name": "Interleukin-12 subunit beta", "gene_name": "IL12B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14765-1", "protein_name": "Signal transducer and activator of transcription 4", "gene_name": "STAT4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29597-1", "protein_name": "Non-receptor tyrosine-protein kinase TYK2", "gene_name": "TYK2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99665-1", "protein_name": "Interleukin-12 receptor subunit beta-2", "gene_name": "IL12RB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29459-1", "protein_name": "Interleukin-12 subunit alpha", "gene_name": "IL12A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42701-1", "protein_name": "Interleukin-12 receptor subunit beta-1", "gene_name": "IL12RB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23458-1", "protein_name": "Tyrosine-protein kinase JAK1", "gene_name": "JAK1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P51809", "url": "https://www.uniprot.org/uniprotkb/P51809" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 801, "end_pos": 801, "sequence_org": "L", "sequence_mut": "A", "comment": "Abolishes in vitro STAT4 binding to a phosphorylated Y-800 peptide.", "evidence": [ { "database": "UniProtKB", "id": "Q99665", "url": "https://www.uniprot.org/uniprotkb/Q99665" }, { "database": "PubMed", "id": "10415122", "url": "https://pubmed.ncbi.nlm.nih.gov/10415122" } ], "uniprot_canonical_ac": "Q99665-1" }, { "start_pos": 802, "end_pos": 802, "sequence_org": "P", "sequence_mut": "A", "comment": "No effect on in vitro STAT4 binding to a phosphorylated Y-800 peptide.", "evidence": [ { "database": "UniProtKB", "id": "Q99665", "url": "https://www.uniprot.org/uniprotkb/Q99665" }, { "database": "PubMed", "id": "10415122", "url": "https://pubmed.ncbi.nlm.nih.gov/10415122" } ], "uniprot_canonical_ac": "Q99665-1" }, { "start_pos": 803, "end_pos": 803, "sequence_org": "S", "sequence_mut": "A", "comment": "No effect on in vitro STAT4 binding to a phosphorylated Y-800 peptide.", "evidence": [ { "database": "UniProtKB", "id": "Q99665", "url": 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"url": "https://www.ebi.ac.uk/intact/interactors/id:Q99665*" }, { "database": "iPTMnet", "id": "Q99665", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q99665" }, { "database": "PubMed", "id": "14559241", "url": "https://pubmed.ncbi.nlm.nih.gov/14559241" }, { "database": "PubMed", "id": "9890938", "url": "https://pubmed.ncbi.nlm.nih.gov/9890938" } ], "site_lbl": "Tyr800", "uniprot_canonical_ac": "Q99665-1" } ], "record_id": "pubmed.10415122", "abstract": "", "glycosylation": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 10 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { 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"uniprot_canonical_ac": "Q9UPM8-1", "protein_name": "AP-4 complex subunit epsilon-1", "gene_name": "AP4E1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IUQ0-1", "protein_name": "Clavesin-1", "gene_name": "CLVS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5SYC1-1", "protein_name": "Clavesin-2", "gene_name": "CLVS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9WV76-1", "protein_name": "AP-4 complex subunit beta-1", "gene_name": "Ap4b1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P15586-1", "protein_name": "N-acetylglucosamine-6-sulfatase", "gene_name": "GNS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63027-1", "protein_name": "Vesicle-associated membrane protein 2", "gene_name": "VAMP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBR2-1", "protein_name": "Cathepsin Z", "gene_name": "CTSZ", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43633-1", "protein_name": "Charged multivesicular body protein 2a", "gene_name": "CHMP2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BV40-1", "protein_name": "Vesicle-associated membrane protein 8", "gene_name": "VAMP8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00115-1", "protein_name": "Deoxyribonuclease-2-alpha", "gene_name": "DNASE2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78537-1", "protein_name": "Biogenesis of lysosome-related organelles complex 1 subunit 1", "gene_name": "BLOC1S1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q00610-1", "protein_name": "Clathrin heavy chain 1", "gene_name": "CLTC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11142-1", "protein_name": "Heat shock cognate 71 kDa protein", "gene_name": "HSPA8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50570-1", "protein_name": "Dynamin-2", "gene_name": "DNM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49407-1", "protein_name": "Beta-arrestin-1", "gene_name": "ARRB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXS5-1", "protein_name": "AP-1 complex subunit mu-1", "gene_name": "AP1M1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6Q5-1", "protein_name": "AP-1 complex subunit mu-2", "gene_name": "AP1M2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09496-1", "protein_name": "Clathrin light chain A", "gene_name": "CLTA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NBS9-1", "protein_name": "Thioredoxin domain-containing protein 5", "gene_name": "TXNDC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75061-1", "protein_name": "Auxilin", "gene_name": "DNAJC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09497-1", "protein_name": "Clathrin light chain B", "gene_name": "CLTB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20645-1", "protein_name": "Cation-dependent mannose-6-phosphate receptor", "gene_name": "M6PR", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05067-1", "protein_name": "Amyloid-beta precursor protein", "gene_name": "APP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96PC3-1", "protein_name": "AP-1 complex subunit sigma-3", "gene_name": "AP1S3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14964-1", "protein_name": "Hepatocyte growth factor-regulated tyrosine kinase substrate", "gene_name": "HGS", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99962-1", "protein_name": "Endophilin-A1", "gene_name": "SH3GL2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P51809", "url": "https://www.uniprot.org/uniprotkb/P51809" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.10436028", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 36 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": 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Mol. Genet.", "date": "2000", "authors": "Ciccodicola A, D'Esposito M, Esposito T, Gianfrancesco F, Migliaccio C, Miano M G, Matarazzo M R, Vacca M, Franz\u00e8 A, Cuccurese M, Cocchia M, Curci A, Terracciano A, Torino A, Cocchia S, Mercadante G, Pannone E, Archidiacono N, Rocchi M, Schlessinger D, D'Urso M", "reference": { "type": "PubMed", "id": "10655549", "url": "https://pubmed.ncbi.nlm.nih.gov/10655549" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P51809-1", "protein_name": "Vesicle-associated membrane protein 7", "gene_name": "VAMP7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8VDD8-1", "protein_name": "WASH complex subunit 1", "gene_name": "Washc1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q01113-1", "protein_name": "Interleukin-9 receptor", "gene_name": "IL9R", "tax_name": "Human" }, { "uniprot_canonical_ac": "A8K0Z3-1", "protein_name": "WASH complex subunit 1", "gene_name": "WASHC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NQA3-1", "protein_name": "WAS protein family homolog 6", "gene_name": "WASH6P", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43610-1", "protein_name": "Protein sprouty homolog 3", "gene_name": "SPRY3", "tax_name": "Human" }, { "uniprot_canonical_ac": "A8MWX3-1", "protein_name": "Putative WAS protein family homolog 4", "gene_name": "WASH4P", "tax_name": "Human" }, { "uniprot_canonical_ac": "C4AMC7-1", "protein_name": "Putative WAS protein family homolog 3", "gene_name": "WASH3P", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6VEQ5-1", "protein_name": "WAS protein family homolog 2", "gene_name": "WASH2P", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P51809", "url": "https://www.uniprot.org/uniprotkb/P51809" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.10655549", "abstract": "", "glycosylation": 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Syntaxin 7 and VAMP-7 are soluble N-ethylmaleimide-sensitive factor attachment protein receptors required for late endosome-lysosome and homotypic lysosome fusion in alveolar macrophages.", "journal": "Molecular biology of the cell", "date": "2000-07", "authors": "Ward D M, Pevsner J, Scullion M A, Vaughn M, Kaplan J", "reference": { "type": "PubMed", "id": "10888671", "url": "https://pubmed.ncbi.nlm.nih.gov/10888671" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P51809-1", "protein_name": "Vesicle-associated membrane protein 7", "gene_name": "VAMP7", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P51809", "url": "https://www.uniprot.org/uniprotkb/P51809" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.10888671", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Charged residues dominate a unique interlocking topography in the heterodimeric cytokine interleukin-12.", "journal": "The EMBO journal", "date": "2000", "authors": "Yoon C, Johnston SC, Tang J, Stahl M, Tobin JF, Somers WS", "reference": { "type": "PubMed", "id": "10899108", "url": "https://pubmed.ncbi.nlm.nih.gov/10899108" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P51809-1", "protein_name": "Vesicle-associated membrane protein 7", "gene_name": "VAMP7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07237-1", "protein_name": "Protein 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0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Protein disulfide 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transcription 4", "gene_name": "STAT4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29597-1", "protein_name": "Non-receptor tyrosine-protein kinase TYK2", "gene_name": "TYK2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99665-1", "protein_name": "Interleukin-12 receptor subunit beta-2", "gene_name": "IL12RB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29459-1", "protein_name": "Interleukin-12 subunit alpha", "gene_name": "IL12A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42701-1", "protein_name": "Interleukin-12 receptor subunit beta-1", "gene_name": "IL12RB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23458-1", "protein_name": "Tyrosine-protein kinase JAK1", "gene_name": "JAK1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P51809", "url": "https://www.uniprot.org/uniprotkb/P51809" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.11054122", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 10 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", 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{ "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A SNARE complex mediating fusion of late endosomes defines conserved properties of SNARE structure and function.", "journal": "The EMBO journal", "date": "2000", "authors": "Antonin W, Holroyd C, Fasshauer D, Pabst S, Von Mollard GF, Jahn R", "reference": { "type": "PubMed", "id": "11101518", "url": "https://pubmed.ncbi.nlm.nih.gov/11101518" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P51809-1", "protein_name": "Vesicle-associated membrane protein 7", "gene_name": "VAMP7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84077-1", "protein_name": "ADP-ribosylation factor 1", "gene_name": "ARF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O70257-1", "protein_name": "Syntaxin-7", "gene_name": "Stx7", "tax_name": "Rat" }, { "uniprot_canonical_ac": "P58200-1", "protein_name": "Vesicle transport through interaction with t-SNAREs homolog 1B", "gene_name": "Vti1b", "tax_name": "Rat" }, { "uniprot_canonical_ac": "P63027-1", "protein_name": "Vesicle-associated membrane protein 2", "gene_name": "VAMP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BV40-1", "protein_name": "Vesicle-associated membrane protein 8", "gene_name": "VAMP8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00161-1", "protein_name": "Synaptosomal-associated protein 23", "gene_name": "SNAP23", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Z2Q7-1", "protein_name": "Syntaxin-8", "gene_name": "Stx8", "tax_name": "Rat" }, { "uniprot_canonical_ac": "Q92538-4", "protein_name": "Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1", "gene_name": "GBF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12846-1", "protein_name": "Syntaxin-4", "gene_name": "STX4", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P51809", "url": "https://www.uniprot.org/uniprotkb/P51809" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.11101518", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 10 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Signal-binding specificity of the mu4 subunit of the adaptor protein complex AP-4.", "journal": "The Journal of biological chemistry", "date": "2001", "authors": "Aguilar RC, Boehm M, Gorshkova I, Crouch RJ, Tomita K, Saito T, Ohno H, Bonifacino JS", "reference": { "type": "PubMed", "id": "11139587", "url": "https://pubmed.ncbi.nlm.nih.gov/11139587" }, "referenced_glycans": [], 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"protein_name": "ADP-ribosylation factor 1", "gene_name": "ARF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q10567-1", "protein_name": "AP-1 complex subunit beta-1", "gene_name": "AP1B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y587-1", "protein_name": "AP-4 complex subunit sigma-1", "gene_name": "AP4S1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPM8-1", "protein_name": "AP-4 complex subunit epsilon-1", "gene_name": "AP4E1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IUQ0-1", "protein_name": "Clavesin-1", "gene_name": "CLVS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5SYC1-1", "protein_name": "Clavesin-2", "gene_name": "CLVS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15586-1", "protein_name": "N-acetylglucosamine-6-sulfatase", "gene_name": "GNS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63027-1", "protein_name": "Vesicle-associated membrane protein 2", "gene_name": "VAMP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBR2-1", "protein_name": "Cathepsin Z", "gene_name": "CTSZ", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43633-1", "protein_name": "Charged multivesicular body protein 2a", "gene_name": "CHMP2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BV40-1", "protein_name": "Vesicle-associated membrane protein 8", "gene_name": "VAMP8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00115-1", "protein_name": "Deoxyribonuclease-2-alpha", "gene_name": "DNASE2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78537-1", "protein_name": "Biogenesis of lysosome-related organelles complex 1 subunit 1", "gene_name": "BLOC1S1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q00610-1", "protein_name": "Clathrin heavy chain 1", "gene_name": "CLTC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11142-1", "protein_name": "Heat shock cognate 71 kDa protein", "gene_name": "HSPA8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50570-1", "protein_name": "Dynamin-2", "gene_name": "DNM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49407-1", "protein_name": "Beta-arrestin-1", "gene_name": "ARRB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXS5-1", "protein_name": "AP-1 complex subunit mu-1", "gene_name": "AP1M1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6Q5-1", "protein_name": "AP-1 complex subunit mu-2", "gene_name": "AP1M2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09496-1", "protein_name": "Clathrin light chain A", "gene_name": "CLTA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NBS9-1", "protein_name": "Thioredoxin domain-containing protein 5", "gene_name": "TXNDC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75061-1", "protein_name": "Auxilin", "gene_name": "DNAJC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09497-1", "protein_name": "Clathrin light chain B", "gene_name": "CLTB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20645-1", "protein_name": "Cation-dependent mannose-6-phosphate receptor", "gene_name": "M6PR", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05067-1", "protein_name": "Amyloid-beta precursor protein", "gene_name": "APP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96PC3-1", "protein_name": "AP-1 complex subunit sigma-3", "gene_name": "AP1S3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14964-1", "protein_name": "Hepatocyte growth factor-regulated tyrosine kinase substrate", "gene_name": "HGS", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99962-1", "protein_name": "Endophilin-A1", "gene_name": "SH3GL2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P51809", "url": "https://www.uniprot.org/uniprotkb/P51809" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.11139587", "abstract": "", "glycosylation": [], "mutagenesis": [], 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"Human" }, { "uniprot_canonical_ac": "P50570-1", "protein_name": "Dynamin-2", "gene_name": "DNM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49407-1", "protein_name": "Beta-arrestin-1", "gene_name": "ARRB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXS5-1", "protein_name": "AP-1 complex subunit mu-1", "gene_name": "AP1M1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6Q5-1", "protein_name": "AP-1 complex subunit mu-2", "gene_name": "AP1M2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09496-1", "protein_name": "Clathrin light chain A", "gene_name": "CLTA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NBS9-1", "protein_name": "Thioredoxin domain-containing protein 5", "gene_name": "TXNDC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75061-1", "protein_name": "Auxilin", "gene_name": "DNAJC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09497-1", "protein_name": "Clathrin light chain B", "gene_name": "CLTB", "tax_name": "Human" }, { 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Nakamura N, Ikehara Y", "reference": { "type": "PubMed", "id": "11590181", "url": "https://pubmed.ncbi.nlm.nih.gov/11590181" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P51809-1", "protein_name": "Vesicle-associated membrane protein 7", "gene_name": "VAMP7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5X3-1", "protein_name": "Sorting nexin-5", "gene_name": "SNX5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P56377-1", "protein_name": "AP-1 complex subunit sigma-2", "gene_name": "AP1S2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00203-1", "protein_name": "AP-3 complex subunit beta-1", "gene_name": "AP3B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5X1-1", "protein_name": "Sorting nexin-9", "gene_name": "SNX9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61966-1", "protein_name": "AP-1 complex subunit sigma-1A", "gene_name": "AP1S1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6B7-1", "protein_name": 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"P78537-1", "protein_name": "Biogenesis of lysosome-related organelles complex 1 subunit 1", "gene_name": "BLOC1S1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95295-1", "protein_name": "SNARE-associated protein Snapin", "gene_name": "SNAPIN", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43493-2", "protein_name": "Trans-Golgi network integral membrane protein 2", "gene_name": "TGOLN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13492-1", "protein_name": "Phosphatidylinositol-binding clathrin assembly protein", "gene_name": "PICALM", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q0IIM8-1", "protein_name": "TBC1 domain family member 8B", "gene_name": "TBC1D8B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EC8-1", "protein_name": "Protein YIPF6", "gene_name": "YIPF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11142-1", "protein_name": "Heat shock cognate 71 kDa protein", "gene_name": "HSPA8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50570-1", "protein_name": "Dynamin-2", "gene_name": "DNM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49407-1", "protein_name": "Beta-arrestin-1", "gene_name": "ARRB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXS5-1", "protein_name": "AP-1 complex subunit mu-1", "gene_name": "AP1M1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6Q5-1", "protein_name": "AP-1 complex subunit mu-2", "gene_name": "AP1M2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02786-1", "protein_name": "Transferrin receptor protein 1", "gene_name": "TFRC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01968-1", "protein_name": "Inositol polyphosphate 5-phosphatase OCRL", "gene_name": "OCRL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14677-1", "protein_name": "Clathrin interactor 1", "gene_name": "CLINT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02792-1", "protein_name": "Ferritin light chain", "gene_name": "FTL", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60749-1", "protein_name": "Sorting nexin-2", "gene_name": "SNX2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H3P7-1", "protein_name": "Golgi resident protein GCP60", "gene_name": "ACBD3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6QNY0-1", "protein_name": "Biogenesis of lysosome-related organelles complex 1 subunit 3", "gene_name": "BLOC1S3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EV8-1", "protein_name": "Dysbindin", "gene_name": "DTNBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02794-1", "protein_name": "Ferritin heavy chain", "gene_name": "FTH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14671-1", "protein_name": "Pumilio homolog 1", "gene_name": "PUM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NBS9-1", "protein_name": "Thioredoxin domain-containing protein 5", "gene_name": "TXNDC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16890-1", "protein_name": "Tumor protein D53", "gene_name": "TPD52L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55327-1", "protein_name": "Tumor protein D52", "gene_name": "TPD52", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5HYK7-1", "protein_name": "SH3 domain-containing protein 19", "gene_name": "SH3D19", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75061-1", "protein_name": "Auxilin", "gene_name": "DNAJC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NUP1-1", "protein_name": "Biogenesis of lysosome-related organelles complex 1 subunit 4", "gene_name": "BLOC1S4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51148-1", "protein_name": "Ras-related protein Rab-5C", "gene_name": "RAB5C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11717-1", "protein_name": "Cation-independent mannose-6-phosphate receptor", "gene_name": "IGF2R", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NC96-1", "protein_name": "Adaptin ear-binding coat-associated protein 1", "gene_name": "NECAP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96PC3-1", "protein_name": "AP-1 complex subunit sigma-3", "gene_name": "AP1S3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99962-1", "protein_name": "Endophilin-A1", "gene_name": "SH3GL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UL45-1", "protein_name": "Biogenesis of lysosome-related organelles complex 1 subunit 6", "gene_name": "BLOC1S6", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P51809", "url": "https://www.uniprot.org/uniprotkb/P51809" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.11590181", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 54 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", 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{ "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Generation of high curvature membranes mediated by direct endophilin bilayer interactions.", "journal": "The Journal of cell biology", "date": "2001", "authors": "Farsad K, Ringstad N, Takei K, Floyd SR, Rose K, De Camilli P", "reference": { "type": "PubMed", "id": "11604418", "url": "https://pubmed.ncbi.nlm.nih.gov/11604418" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P51809-1", "protein_name": "Vesicle-associated membrane protein 7", "gene_name": "VAMP7", "tax_name": "Human" }, { 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"tax_name": "Human" }, { "uniprot_canonical_ac": "O43747-1", "protein_name": "AP-1 complex subunit gamma-1", "gene_name": "AP1G1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99523-1", "protein_name": "Sortilin", "gene_name": "SORT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84077-1", "protein_name": "ADP-ribosylation factor 1", "gene_name": "ARF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q10567-1", "protein_name": "AP-1 complex subunit beta-1", "gene_name": "AP1B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y587-1", "protein_name": "AP-4 complex subunit sigma-1", "gene_name": "AP4S1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92572-1", "protein_name": "AP-3 complex subunit sigma-1", "gene_name": "AP3S1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPM8-1", "protein_name": "AP-4 complex subunit epsilon-1", "gene_name": "AP4E1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IUQ0-1", "protein_name": "Clavesin-1", "gene_name": "CLVS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5SYC1-1", "protein_name": "Clavesin-2", "gene_name": "CLVS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O35179-1", "protein_name": "Endophilin-A1", "gene_name": "Sh3gl2", "tax_name": "Rat" }, { "uniprot_canonical_ac": "Q6AYE2-1", "protein_name": "Endophilin-B1", "gene_name": "Sh3glb1", "tax_name": "Rat" }, { "uniprot_canonical_ac": "P15586-1", "protein_name": "N-acetylglucosamine-6-sulfatase", "gene_name": "GNS", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14789-1", "protein_name": "Golgin subfamily B member 1", "gene_name": "GOLGB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63027-1", "protein_name": "Vesicle-associated membrane protein 2", "gene_name": "VAMP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBR2-1", "protein_name": "Cathepsin Z", "gene_name": "CTSZ", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43633-1", "protein_name": "Charged multivesicular body protein 2a", "gene_name": "CHMP2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75146-1", "protein_name": "Huntingtin-interacting protein 1-related protein", "gene_name": "HIP1R", "tax_name": "Human" }, { "uniprot_canonical_ac": "P54920-1", "protein_name": "Alpha-soluble NSF attachment protein", "gene_name": "NAPA", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00443-1", "protein_name": "Phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit alpha", "gene_name": "PIK3C2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BV40-1", "protein_name": "Vesicle-associated membrane protein 8", "gene_name": "VAMP8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75976-1", "protein_name": "Carboxypeptidase D", "gene_name": "CPD", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00115-1", "protein_name": "Deoxyribonuclease-2-alpha", "gene_name": "DNASE2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14976-1", "protein_name": "Cyclin-G-associated kinase", "gene_name": "GAK", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78537-1", "protein_name": "Biogenesis of lysosome-related organelles complex 1 subunit 1", "gene_name": "BLOC1S1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95295-1", "protein_name": "SNARE-associated protein Snapin", "gene_name": "SNAPIN", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43493-2", "protein_name": "Trans-Golgi network integral membrane protein 2", "gene_name": "TGOLN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13492-1", "protein_name": "Phosphatidylinositol-binding clathrin assembly protein", "gene_name": "PICALM", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q0IIM8-1", "protein_name": "TBC1 domain family member 8B", "gene_name": "TBC1D8B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EC8-1", "protein_name": "Protein YIPF6", "gene_name": "YIPF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q00610-1", "protein_name": "Clathrin heavy chain 1", "gene_name": "CLTC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11142-1", "protein_name": "Heat shock cognate 71 kDa protein", "gene_name": "HSPA8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50570-1", "protein_name": "Dynamin-2", "gene_name": "DNM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49407-1", "protein_name": "Beta-arrestin-1", "gene_name": "ARRB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXS5-1", "protein_name": "AP-1 complex subunit mu-1", "gene_name": "AP1M1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6Q5-1", "protein_name": "AP-1 complex subunit mu-2", "gene_name": "AP1M2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02786-1", "protein_name": "Transferrin receptor protein 1", "gene_name": "TFRC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01968-1", "protein_name": "Inositol polyphosphate 5-phosphatase OCRL", "gene_name": "OCRL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14677-1", "protein_name": "Clathrin interactor 1", "gene_name": "CLINT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02792-1", "protein_name": "Ferritin light chain", "gene_name": "FTL", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60749-1", "protein_name": "Sorting nexin-2", "gene_name": "SNX2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H3P7-1", "protein_name": "Golgi resident protein GCP60", "gene_name": "ACBD3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6QNY0-1", "protein_name": "Biogenesis of lysosome-related organelles complex 1 subunit 3", "gene_name": "BLOC1S3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EV8-1", "protein_name": "Dysbindin", "gene_name": "DTNBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09496-1", "protein_name": "Clathrin light chain A", "gene_name": "CLTA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02794-1", "protein_name": "Ferritin heavy chain", "gene_name": "FTH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14671-1", "protein_name": "Pumilio homolog 1", "gene_name": "PUM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NBS9-1", "protein_name": "Thioredoxin domain-containing protein 5", "gene_name": "TXNDC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16890-1", "protein_name": "Tumor protein D53", "gene_name": "TPD52L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55327-1", "protein_name": "Tumor protein D52", "gene_name": "TPD52", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5HYK7-1", "protein_name": "SH3 domain-containing protein 19", "gene_name": "SH3D19", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75061-1", "protein_name": "Auxilin", "gene_name": "DNAJC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NUP1-1", "protein_name": "Biogenesis of lysosome-related organelles complex 1 subunit 4", "gene_name": "BLOC1S4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09497-1", "protein_name": "Clathrin light chain B", "gene_name": "CLTB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y371-1", "protein_name": "Endophilin-B1", "gene_name": "SH3GLB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51148-1", "protein_name": "Ras-related protein Rab-5C", "gene_name": "RAB5C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11717-1", "protein_name": "Cation-independent mannose-6-phosphate receptor", "gene_name": "IGF2R", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20645-1", "protein_name": "Cation-dependent mannose-6-phosphate receptor", "gene_name": "M6PR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NC96-1", "protein_name": "Adaptin ear-binding coat-associated protein 1", "gene_name": "NECAP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05067-1", "protein_name": "Amyloid-beta precursor protein", "gene_name": "APP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96PC3-1", "protein_name": "AP-1 complex subunit sigma-3", "gene_name": "AP1S3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14964-1", "protein_name": "Hepatocyte growth factor-regulated tyrosine kinase substrate", "gene_name": "HGS", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99962-1", "protein_name": "Endophilin-A1", "gene_name": "SH3GL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UL45-1", "protein_name": "Biogenesis of lysosome-related organelles complex 1 subunit 6", "gene_name": "BLOC1S6", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P51809", "url": "https://www.uniprot.org/uniprotkb/P51809" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.11604418", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 72 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "GGAs: roles of the different domains and comparison with AP-1 and clathrin.", "journal": "Molecular biology of the cell", "date": "2001", "authors": "Hirst J, Lindsay MR, Robinson MS", "reference": { "type": "PubMed", "id": "11694590", "url": "https://pubmed.ncbi.nlm.nih.gov/11694590" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P51809-1", "protein_name": "Vesicle-associated membrane protein 7", "gene_name": "VAMP7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5X3-1", "protein_name": "Sorting nexin-5", "gene_name": "SNX5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P56377-1", "protein_name": "AP-1 complex subunit sigma-2", "gene_name": "AP1S2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00189-1", "protein_name": "AP-4 complex subunit mu-1", "gene_name": "AP4M1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00203-1", "protein_name": "AP-3 complex subunit beta-1", "gene_name": "AP3B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5X1-1", "protein_name": "Sorting nexin-9", "gene_name": "SNX9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61966-1", "protein_name": "AP-1 complex subunit sigma-1A", "gene_name": "AP1S1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75843-1", "protein_name": "AP-1 complex subunit gamma-like 2", "gene_name": "AP1G2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6B7-1", "protein_name": "AP-4 complex subunit beta-1", "gene_name": "AP4B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43747-1", 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"gene_name": "TPD52L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55327-1", "protein_name": "Tumor protein D52", "gene_name": "TPD52", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5HYK7-1", "protein_name": "SH3 domain-containing protein 19", "gene_name": "SH3D19", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75061-1", "protein_name": "Auxilin", "gene_name": "DNAJC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NUP1-1", "protein_name": "Biogenesis of lysosome-related organelles complex 1 subunit 4", "gene_name": "BLOC1S4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09497-1", "protein_name": "Clathrin light chain B", "gene_name": "CLTB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51148-1", "protein_name": "Ras-related protein Rab-5C", "gene_name": "RAB5C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11717-1", "protein_name": "Cation-independent mannose-6-phosphate receptor", "gene_name": "IGF2R", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20645-1", "protein_name": "Cation-dependent mannose-6-phosphate receptor", "gene_name": "M6PR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NC96-1", "protein_name": "Adaptin ear-binding coat-associated protein 1", "gene_name": "NECAP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05067-1", "protein_name": "Amyloid-beta precursor protein", "gene_name": "APP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96PC3-1", "protein_name": "AP-1 complex subunit sigma-3", "gene_name": "AP1S3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14964-1", "protein_name": "Hepatocyte growth factor-regulated tyrosine kinase substrate", "gene_name": "HGS", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99962-1", "protein_name": "Endophilin-A1", "gene_name": "SH3GL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UL45-1", "protein_name": "Biogenesis of lysosome-related organelles complex 1 subunit 6", "gene_name": "BLOC1S6", "tax_name": "Human" } 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Natl. Acad. Sci. U.S.A.", "date": "2003", "authors": "Martinez-Arca Sonia, Rudge Rachel, Vacca Marcella, Raposo Gra\u00e7a, Camonis Jacques, Proux-Gillardeaux V\u00e9ronique, Daviet Laurent, Formstecher Etienne, Hamburger Alexandre, Filippini Francesco, D'Esposito Maurizio, Galli Thierry", "reference": { "type": "PubMed", "id": "12853575", "url": "https://pubmed.ncbi.nlm.nih.gov/12853575" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P51809-1", "protein_name": "Vesicle-associated membrane protein 7", "gene_name": "VAMP7", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P51809", "url": "https://www.uniprot.org/uniprotkb/P51809" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.12853575", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { 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{ "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Identification of snapin and three novel proteins (BLOS1, BLOS2, and BLOS3/reduced pigmentation) as subunits of biogenesis of lysosome-related organelles complex-1 (BLOC-1).", "journal": "The 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"protein_name": "Inositol polyphosphate 5-phosphatase OCRL", "gene_name": "OCRL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14677-1", "protein_name": "Clathrin interactor 1", "gene_name": "CLINT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02792-1", "protein_name": "Ferritin light chain", "gene_name": "FTL", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60749-1", "protein_name": "Sorting nexin-2", "gene_name": "SNX2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H3P7-1", "protein_name": "Golgi resident protein GCP60", "gene_name": "ACBD3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6QNY0-1", "protein_name": "Biogenesis of lysosome-related organelles complex 1 subunit 3", "gene_name": "BLOC1S3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6QNY1-1", "protein_name": "Biogenesis of lysosome-related organelles complex 1 subunit 2", "gene_name": "BLOC1S2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EV8-1", "protein_name": "Dysbindin", "gene_name": "DTNBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02794-1", "protein_name": "Ferritin heavy chain", "gene_name": "FTH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14671-1", "protein_name": "Pumilio homolog 1", "gene_name": "PUM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NBS9-1", "protein_name": "Thioredoxin domain-containing protein 5", "gene_name": "TXNDC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16890-1", "protein_name": "Tumor protein D53", "gene_name": "TPD52L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55327-1", "protein_name": "Tumor protein D52", "gene_name": "TPD52", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9CWG9-1", "protein_name": "Biogenesis of lysosome-related organelles complex 1 subunit 2", "gene_name": "Bloc1s2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q5HYK7-1", "protein_name": "SH3 domain-containing protein 19", "gene_name": "SH3D19", "tax_name": "Human" }, { "uniprot_canonical_ac": 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"count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "IL-12 receptor. 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"date": "2005", "authors": "Lee DW, Zhao X, Zhang F, Eisenberg E, Greene LE", "reference": { "type": "PubMed", "id": "16155256", "url": "https://pubmed.ncbi.nlm.nih.gov/16155256" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P51809-1", "protein_name": "Vesicle-associated membrane protein 7", "gene_name": "VAMP7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5X3-1", "protein_name": "Sorting nexin-5", "gene_name": "SNX5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P56377-1", "protein_name": "AP-1 complex subunit sigma-2", "gene_name": "AP1S2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00189-1", "protein_name": "AP-4 complex subunit mu-1", "gene_name": "AP4M1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00203-1", "protein_name": "AP-3 complex subunit beta-1", "gene_name": "AP3B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5X1-1", "protein_name": "Sorting nexin-9", "gene_name": "SNX9", "tax_name": "Human" }, { 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"gene_name": "CTSZ", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43633-1", "protein_name": "Charged multivesicular body protein 2a", "gene_name": "CHMP2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75146-1", "protein_name": "Huntingtin-interacting protein 1-related protein", "gene_name": "HIP1R", "tax_name": "Human" }, { "uniprot_canonical_ac": "P54920-1", "protein_name": "Alpha-soluble NSF attachment protein", "gene_name": "NAPA", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00443-1", "protein_name": "Phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit alpha", "gene_name": "PIK3C2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BV40-1", "protein_name": "Vesicle-associated membrane protein 8", "gene_name": "VAMP8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75976-1", "protein_name": "Carboxypeptidase D", "gene_name": "CPD", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00115-1", "protein_name": "Deoxyribonuclease-2-alpha", 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"YIPF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q00610-1", "protein_name": "Clathrin heavy chain 1", "gene_name": "CLTC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11142-1", "protein_name": "Heat shock cognate 71 kDa protein", "gene_name": "HSPA8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50570-1", "protein_name": "Dynamin-2", "gene_name": "DNM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49407-1", "protein_name": "Beta-arrestin-1", "gene_name": "ARRB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXS5-1", "protein_name": "AP-1 complex subunit mu-1", "gene_name": "AP1M1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6Q5-1", "protein_name": "AP-1 complex subunit mu-2", "gene_name": "AP1M2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02786-1", "protein_name": "Transferrin receptor protein 1", "gene_name": "TFRC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01968-1", "protein_name": "Inositol polyphosphate 5-phosphatase 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"protein_name": "Ferritin heavy chain", "gene_name": "FTH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14671-1", "protein_name": "Pumilio homolog 1", "gene_name": "PUM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NBS9-1", "protein_name": "Thioredoxin domain-containing protein 5", "gene_name": "TXNDC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16890-1", "protein_name": "Tumor protein D53", "gene_name": "TPD52L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55327-1", "protein_name": "Tumor protein D52", "gene_name": "TPD52", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5HYK7-1", "protein_name": "SH3 domain-containing protein 19", "gene_name": "SH3D19", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75061-1", "protein_name": "Auxilin", "gene_name": "DNAJC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NUP1-1", "protein_name": "Biogenesis of lysosome-related organelles complex 1 subunit 4", "gene_name": "BLOC1S4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09497-1", "protein_name": "Clathrin light chain B", "gene_name": "CLTB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51148-1", "protein_name": "Ras-related protein Rab-5C", "gene_name": "RAB5C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11717-1", "protein_name": "Cation-independent mannose-6-phosphate receptor", "gene_name": "IGF2R", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20645-1", "protein_name": "Cation-dependent mannose-6-phosphate receptor", "gene_name": "M6PR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NC96-1", "protein_name": "Adaptin ear-binding coat-associated protein 1", "gene_name": "NECAP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05067-1", "protein_name": "Amyloid-beta precursor protein", "gene_name": "APP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96PC3-1", "protein_name": "AP-1 complex subunit sigma-3", "gene_name": "AP1S3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14964-1", "protein_name": "Hepatocyte growth factor-regulated tyrosine kinase substrate", "gene_name": "HGS", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99962-1", "protein_name": "Endophilin-A1", "gene_name": "SH3GL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UL45-1", "protein_name": "Biogenesis of lysosome-related organelles complex 1 subunit 6", "gene_name": "BLOC1S6", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P51809", "url": "https://www.uniprot.org/uniprotkb/P51809" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.16155256", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 69 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" 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"count": 0 } ], "sort_fields": [] } ] }, { "title": "Coexpression of two distinct genes is required to generate secreted bioactive cytotoxic lymphocyte maturation factor.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "1991", "authors": "Gubler U, Chua AO, Schoenhaut DS, Dwyer CM, McComas W, Motyka R, Nabavi N, Wolitzky AG, Quinn PM, Familletti PC, et al.", "reference": { "type": "PubMed", "id": "1674604", "url": "https://pubmed.ncbi.nlm.nih.gov/1674604" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P51809-1", "protein_name": "Vesicle-associated membrane protein 7", "gene_name": "VAMP7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07237-1", "protein_name": "Protein disulfide-isomerase", "gene_name": "P4HB", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60674-1", "protein_name": "Tyrosine-protein kinase JAK2", "gene_name": "JAK2", "tax_name": "Human" }, { "uniprot_canonical_ac": 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9606, "evidence": [ { "database": "UniProtKB", "id": "P51809", "url": "https://www.uniprot.org/uniprotkb/P51809" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.1674604", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 10 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", 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"n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Gamma-adaptin, a novel ubiquitin-interacting adaptor, and Nedd4 ubiquitin ligase control hepatitis B virus maturation.", "journal": "The Journal of biological chemistry", "date": "2006", "authors": "Rost M, Mann S, Lambert C, Doring T, Thome N, Prange R", "reference": { "type": "PubMed", "id": "16867982", "url": "https://pubmed.ncbi.nlm.nih.gov/16867982" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P51809-1", "protein_name": "Vesicle-associated membrane protein 7", "gene_name": "VAMP7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P56377-1", "protein_name": "AP-1 complex subunit sigma-2", "gene_name": "AP1S2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00189-1", "protein_name": "AP-4 complex subunit mu-1", "gene_name": "AP4M1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61966-1", "protein_name": "AP-1 complex subunit sigma-1A", "gene_name": "AP1S1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75843-1", "protein_name": 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"field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Comparative proteomics of clathrin-coated vesicles.", "journal": "The Journal of cell biology", "date": "2006", "authors": "Borner GH, Harbour M, Hester S, Lilley KS, Robinson MS", "reference": { "type": "PubMed", "id": "17116749", "url": "https://pubmed.ncbi.nlm.nih.gov/17116749" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P51809-1", "protein_name": "Vesicle-associated membrane protein 7", "gene_name": "VAMP7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5X3-1", "protein_name": "Sorting nexin-5", "gene_name": "SNX5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P56377-1", "protein_name": "AP-1 complex subunit sigma-2", "gene_name": "AP1S2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00189-1", "protein_name": "AP-4 complex subunit mu-1", "gene_name": "AP4M1", "tax_name": "Human" }, { 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"GOLGB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63027-1", "protein_name": "Vesicle-associated membrane protein 2", "gene_name": "VAMP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBR2-1", "protein_name": "Cathepsin Z", "gene_name": "CTSZ", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43633-1", "protein_name": "Charged multivesicular body protein 2a", "gene_name": "CHMP2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75146-1", "protein_name": "Huntingtin-interacting protein 1-related protein", "gene_name": "HIP1R", "tax_name": "Human" }, { "uniprot_canonical_ac": "P54920-1", "protein_name": "Alpha-soluble NSF attachment protein", "gene_name": "NAPA", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00443-1", "protein_name": "Phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit alpha", "gene_name": "PIK3C2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BV40-1", "protein_name": "Vesicle-associated membrane protein 8", "gene_name": "VAMP8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75976-1", "protein_name": "Carboxypeptidase D", "gene_name": "CPD", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00115-1", "protein_name": "Deoxyribonuclease-2-alpha", "gene_name": "DNASE2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14976-1", "protein_name": "Cyclin-G-associated kinase", "gene_name": "GAK", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78537-1", "protein_name": "Biogenesis of lysosome-related organelles complex 1 subunit 1", "gene_name": "BLOC1S1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95295-1", "protein_name": "SNARE-associated protein Snapin", "gene_name": "SNAPIN", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43493-2", "protein_name": "Trans-Golgi network integral membrane protein 2", "gene_name": "TGOLN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13492-1", "protein_name": "Phosphatidylinositol-binding clathrin assembly protein", "gene_name": "PICALM", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q0IIM8-1", "protein_name": "TBC1 domain family member 8B", "gene_name": "TBC1D8B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EC8-1", "protein_name": "Protein YIPF6", "gene_name": "YIPF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q00610-1", "protein_name": "Clathrin heavy chain 1", "gene_name": "CLTC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11142-1", "protein_name": "Heat shock cognate 71 kDa protein", "gene_name": "HSPA8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50570-1", "protein_name": "Dynamin-2", "gene_name": "DNM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49407-1", "protein_name": "Beta-arrestin-1", "gene_name": "ARRB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXS5-1", "protein_name": "AP-1 complex subunit mu-1", "gene_name": "AP1M1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6Q5-1", "protein_name": "AP-1 complex subunit mu-2", "gene_name": "AP1M2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02786-1", "protein_name": "Transferrin receptor protein 1", "gene_name": "TFRC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01968-1", "protein_name": "Inositol polyphosphate 5-phosphatase OCRL", "gene_name": "OCRL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14677-1", "protein_name": "Clathrin interactor 1", "gene_name": "CLINT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02792-1", "protein_name": "Ferritin light chain", "gene_name": "FTL", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60749-1", "protein_name": "Sorting nexin-2", "gene_name": "SNX2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H3P7-1", "protein_name": "Golgi resident protein GCP60", "gene_name": "ACBD3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6QNY0-1", "protein_name": "Biogenesis of lysosome-related organelles complex 1 subunit 3", "gene_name": "BLOC1S3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EV8-1", "protein_name": "Dysbindin", "gene_name": "DTNBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09496-1", "protein_name": "Clathrin light chain A", "gene_name": "CLTA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02794-1", "protein_name": "Ferritin heavy chain", "gene_name": "FTH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14671-1", "protein_name": "Pumilio homolog 1", "gene_name": "PUM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NBS9-1", "protein_name": "Thioredoxin domain-containing protein 5", "gene_name": "TXNDC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16890-1", "protein_name": "Tumor protein D53", "gene_name": "TPD52L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55327-1", "protein_name": "Tumor protein D52", "gene_name": "TPD52", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5HYK7-1", "protein_name": "SH3 domain-containing protein 19", "gene_name": "SH3D19", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75061-1", "protein_name": "Auxilin", "gene_name": "DNAJC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NUP1-1", "protein_name": "Biogenesis of lysosome-related organelles complex 1 subunit 4", "gene_name": "BLOC1S4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09497-1", "protein_name": "Clathrin light chain B", "gene_name": "CLTB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51148-1", "protein_name": "Ras-related protein Rab-5C", "gene_name": "RAB5C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11717-1", "protein_name": "Cation-independent mannose-6-phosphate receptor", "gene_name": "IGF2R", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20645-1", "protein_name": "Cation-dependent mannose-6-phosphate receptor", "gene_name": "M6PR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NC96-1", "protein_name": "Adaptin ear-binding coat-associated protein 1", "gene_name": "NECAP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05067-1", "protein_name": "Amyloid-beta precursor protein", "gene_name": "APP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96PC3-1", "protein_name": "AP-1 complex subunit sigma-3", "gene_name": "AP1S3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14964-1", "protein_name": "Hepatocyte growth factor-regulated tyrosine kinase substrate", "gene_name": "HGS", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99962-1", "protein_name": "Endophilin-A1", "gene_name": "SH3GL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UL45-1", "protein_name": "Biogenesis of lysosome-related organelles complex 1 subunit 6", "gene_name": "BLOC1S6", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P51809", "url": "https://www.uniprot.org/uniprotkb/P51809" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.17116749", "abstract": "", "glycosylation": [], 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Daniella, Ewen Catherine, Davidson Courtney E, Ghaffari Mazyar, Kane Kevin P, Lacy Paige, Logan Michael R, Befus A Dean, Bleackley R Chris, Moqbel Redwan", "reference": { "type": "PubMed", "id": "18042464", "url": "https://pubmed.ncbi.nlm.nih.gov/18042464" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P51809-1", "protein_name": "Vesicle-associated membrane protein 7", "gene_name": "VAMP7", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P51809", "url": "https://www.uniprot.org/uniprotkb/P51809" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.18042464", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ 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}, { "uniprot_canonical_ac": "O75462-1", "protein_name": "Cytokine receptor-like factor 1", "gene_name": "CRLF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07237-1", "protein_name": "Protein disulfide-isomerase", "gene_name": "P4HB", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60674-1", "protein_name": "Tyrosine-protein kinase JAK2", "gene_name": "JAK2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40189-1", "protein_name": "Interleukin-6 receptor subunit beta", "gene_name": "IL6ST", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NEV9-1", "protein_name": "Interleukin-27 subunit alpha", "gene_name": "IL27", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14213-1", "protein_name": "Interleukin-27 subunit beta", "gene_name": "EBI3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29460-1", "protein_name": "Interleukin-12 subunit beta", "gene_name": "IL12B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14765-1", "protein_name": "Signal transducer and 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neuroaxonal injury in cerebral palsy.", "journal": "American journal of human genetics", "date": "2009", "authors": "Verkerk AJ, Schot R, Dumee B, Schellekens K, Swagemakers S, Bertoli-Avella AM, Lequin MH, Dudink J, Govaert P, van Zwol AL, Hirst J, Wessels MW, Catsman-Berrevoets C, Verheijen FW, de Graaff E, de Coo IF, Kros JM, Willemsen R, Willems PJ, van der Spek PJ, Mancini GM", "reference": { "type": "PubMed", "id": "19559397", "url": "https://pubmed.ncbi.nlm.nih.gov/19559397" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P51809-1", "protein_name": "Vesicle-associated membrane protein 7", "gene_name": "VAMP7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P56377-1", "protein_name": "AP-1 complex subunit sigma-2", "gene_name": "AP1S2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00189-1", "protein_name": "AP-4 complex subunit mu-1", "gene_name": "AP4M1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61966-1", "protein_name": "AP-1 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"uniprot_canonical_ac": "P61966-1", "protein_name": "AP-1 complex subunit sigma-1A", "gene_name": "AP1S1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75843-1", "protein_name": "AP-1 complex subunit gamma-like 2", "gene_name": "AP1G2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6B7-1", "protein_name": "AP-4 complex subunit beta-1", "gene_name": "AP4B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43747-1", "protein_name": "AP-1 complex subunit gamma-1", "gene_name": "AP1G1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84077-1", "protein_name": "ADP-ribosylation factor 1", "gene_name": "ARF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q10567-1", "protein_name": "AP-1 complex subunit beta-1", "gene_name": "AP1B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y587-1", "protein_name": "AP-4 complex subunit sigma-1", "gene_name": "AP4S1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPM8-1", "protein_name": "AP-4 complex subunit 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"gene_name": "Clvs1", "tax_name": "Rat" }, { "uniprot_canonical_ac": "Q9BV40-1", "protein_name": "Vesicle-associated membrane protein 8", "gene_name": "VAMP8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00115-1", "protein_name": "Deoxyribonuclease-2-alpha", "gene_name": "DNASE2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78537-1", "protein_name": "Biogenesis of lysosome-related organelles complex 1 subunit 1", "gene_name": "BLOC1S1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q00610-1", "protein_name": "Clathrin heavy chain 1", "gene_name": "CLTC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11142-1", "protein_name": "Heat shock cognate 71 kDa protein", "gene_name": "HSPA8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50570-1", "protein_name": "Dynamin-2", "gene_name": "DNM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49407-1", "protein_name": "Beta-arrestin-1", "gene_name": "ARRB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXS5-1", "protein_name": "AP-1 complex subunit mu-1", "gene_name": "AP1M1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6Q5-1", "protein_name": "AP-1 complex subunit mu-2", "gene_name": "AP1M2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09496-1", "protein_name": "Clathrin light chain A", "gene_name": "CLTA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NBS9-1", "protein_name": "Thioredoxin domain-containing protein 5", "gene_name": "TXNDC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75061-1", "protein_name": "Auxilin", "gene_name": "DNAJC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09497-1", "protein_name": "Clathrin light chain B", "gene_name": "CLTB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20645-1", "protein_name": "Cation-dependent mannose-6-phosphate receptor", "gene_name": "M6PR", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05067-1", "protein_name": "Amyloid-beta precursor protein", "gene_name": "APP", "tax_name": 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No effect on subcellular location.", "evidence": [ { "database": "UniProtKB", "id": "Q8IUQ0", "url": "https://www.uniprot.org/uniprotkb/Q8IUQ0" }, { "database": "PubMed", "id": "19651769", "url": "https://pubmed.ncbi.nlm.nih.gov/19651769" } ], "uniprot_canonical_ac": "Q8IUQ0-1" } ], "record_id": "pubmed.19651769", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 37 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": 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"o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Inhibition of secretion of interleukin (IL)-12/IL-23 family cytokines by 4-trifluoromethyl-celecoxib is coupled to degradation via the endoplasmic reticulum stress protein HERP.", "journal": "The Journal of biological chemistry", "date": "2010", "authors": "McLaughlin M, Alloza I, Quoc HP, Scott CJ, Hirabayashi Y, Vandenbroeck K", "reference": { "type": "PubMed", "id": "20054003", "url": "https://pubmed.ncbi.nlm.nih.gov/20054003" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P51809-1", "protein_name": "Vesicle-associated membrane protein 7", "gene_name": "VAMP7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07237-1", "protein_name": "Protein disulfide-isomerase", "gene_name": "P4HB", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60674-1", "protein_name": "Tyrosine-protein kinase JAK2", "gene_name": "JAK2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29460-1", "protein_name": "Interleukin-12 subunit beta", "gene_name": "IL12B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14765-1", "protein_name": "Signal transducer and activator of transcription 4", "gene_name": "STAT4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29597-1", "protein_name": "Non-receptor tyrosine-protein kinase TYK2", "gene_name": "TYK2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99665-1", "protein_name": "Interleukin-12 receptor subunit beta-2", "gene_name": "IL12RB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29459-1", "protein_name": "Interleukin-12 subunit alpha", "gene_name": "IL12A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42701-1", "protein_name": "Interleukin-12 receptor subunit beta-1", "gene_name": "IL12RB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23458-1", "protein_name": "Tyrosine-protein kinase JAK1", "gene_name": "JAK1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P51809", "url": "https://www.uniprot.org/uniprotkb/P51809" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.20054003", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 10 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Sorting of the Alzheimer's disease amyloid precursor protein mediated by the AP-4 complex.", "journal": "Developmental cell", "date": "2010", "authors": "Burgos PV, Mardones GA, Rojas AL, daSilva LL, Prabhu Y, Hurley JH, Bonifacino JS", "reference": { "type": "PubMed", "id": "20230749", "url": "https://pubmed.ncbi.nlm.nih.gov/20230749" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P51809-1", "protein_name": "Vesicle-associated membrane protein 7", "gene_name": "VAMP7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P56377-1", "protein_name": "AP-1 complex subunit sigma-2", "gene_name": "AP1S2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00189-1", "protein_name": "AP-4 complex subunit mu-1", "gene_name": "AP4M1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61966-1", "protein_name": "AP-1 complex subunit sigma-1A", "gene_name": "AP1S1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75843-1", "protein_name": "AP-1 complex subunit 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"protein_name": "Clavesin-2", "gene_name": "CLVS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15586-1", "protein_name": "N-acetylglucosamine-6-sulfatase", "gene_name": "GNS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63027-1", "protein_name": "Vesicle-associated membrane protein 2", "gene_name": "VAMP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBR2-1", "protein_name": "Cathepsin Z", "gene_name": "CTSZ", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43633-1", "protein_name": "Charged multivesicular body protein 2a", "gene_name": "CHMP2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BV40-1", "protein_name": "Vesicle-associated membrane protein 8", "gene_name": "VAMP8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00115-1", "protein_name": "Deoxyribonuclease-2-alpha", "gene_name": "DNASE2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78537-1", "protein_name": "Biogenesis of lysosome-related organelles complex 1 subunit 1", "gene_name": "BLOC1S1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q00610-1", "protein_name": "Clathrin heavy chain 1", "gene_name": "CLTC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11142-1", "protein_name": "Heat shock cognate 71 kDa protein", "gene_name": "HSPA8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50570-1", "protein_name": "Dynamin-2", "gene_name": "DNM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49407-1", "protein_name": "Beta-arrestin-1", "gene_name": "ARRB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXS5-1", "protein_name": "AP-1 complex subunit mu-1", "gene_name": "AP1M1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6Q5-1", "protein_name": "AP-1 complex subunit mu-2", "gene_name": "AP1M2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09496-1", "protein_name": "Clathrin light chain A", "gene_name": "CLTA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NBS9-1", "protein_name": "Thioredoxin domain-containing 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"name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P51809", "url": "https://www.uniprot.org/uniprotkb/P51809" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 255, "end_pos": 255, "sequence_org": "F", "sequence_mut": "A", "comment": "Abolishes interaction with APP.", "evidence": [ { "database": "UniProtKB", "id": "O00189", "url": "https://www.uniprot.org/uniprotkb/O00189" }, { "database": "PubMed", "id": "20230749", "url": "https://pubmed.ncbi.nlm.nih.gov/20230749" } ], "uniprot_canonical_ac": "O00189-1" }, { "start_pos": 283, "end_pos": 283, "sequence_org": "R", "sequence_mut": "D", "comment": "Strongly reduced interaction with APP.", "evidence": [ { "database": "UniProtKB", "id": "O00189", "url": "https://www.uniprot.org/uniprotkb/O00189" }, { "database": "PubMed", "id": "20230749", "url": "https://pubmed.ncbi.nlm.nih.gov/20230749" } ], "uniprot_canonical_ac": 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"journal": "American journal of human genetics", "date": "2011", "authors": "Abou Jamra R, Philippe O, Raas-Rothschild A, Eck SH, Graf E, Buchert R, Borck G, Ekici A, Brockschmidt FF, Nothen MM, Munnich A, Strom TM, Reis A, Colleaux L", "reference": { "type": "PubMed", "id": "21620353", "url": "https://pubmed.ncbi.nlm.nih.gov/21620353" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P51809-1", "protein_name": "Vesicle-associated membrane protein 7", "gene_name": "VAMP7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P56377-1", "protein_name": "AP-1 complex subunit sigma-2", "gene_name": "AP1S2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00189-1", "protein_name": "AP-4 complex subunit mu-1", "gene_name": "AP4M1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61966-1", "protein_name": "AP-1 complex subunit sigma-1A", "gene_name": "AP1S1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75843-1", "protein_name": "AP-1 complex subunit 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"protein_name": "Clavesin-2", "gene_name": "CLVS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15586-1", "protein_name": "N-acetylglucosamine-6-sulfatase", "gene_name": "GNS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63027-1", "protein_name": "Vesicle-associated membrane protein 2", "gene_name": "VAMP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBR2-1", "protein_name": "Cathepsin Z", "gene_name": "CTSZ", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43633-1", "protein_name": "Charged multivesicular body protein 2a", "gene_name": "CHMP2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BV40-1", "protein_name": "Vesicle-associated membrane protein 8", "gene_name": "VAMP8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00115-1", "protein_name": "Deoxyribonuclease-2-alpha", "gene_name": "DNASE2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78537-1", "protein_name": "Biogenesis of lysosome-related organelles complex 1 subunit 1", "gene_name": "BLOC1S1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q00610-1", "protein_name": "Clathrin heavy chain 1", "gene_name": "CLTC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11142-1", "protein_name": "Heat shock cognate 71 kDa protein", "gene_name": "HSPA8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50570-1", "protein_name": "Dynamin-2", "gene_name": "DNM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49407-1", "protein_name": "Beta-arrestin-1", "gene_name": "ARRB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXS5-1", "protein_name": "AP-1 complex subunit mu-1", "gene_name": "AP1M1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6Q5-1", "protein_name": "AP-1 complex subunit mu-2", "gene_name": "AP1M2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09496-1", "protein_name": "Clathrin light chain A", "gene_name": "CLTA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NBS9-1", "protein_name": "Thioredoxin domain-containing 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"count": 0 } ], "sort_fields": [] } ] }, { "title": "Increased activity of the vesicular soluble N-ethylmaleimide-sensitive factor attachment protein receptor TI-VAMP/VAMP7 by tyrosine phosphorylation in the Longin domain.", "journal": "The Journal of biological chemistry", "date": "2013", "authors": "Burgo A, Casano AM, Kuster A, Arold ST, Wang G, Nola S, Verraes A, Dingli F, Loew D, Galli T", "reference": { "type": "PubMed", "id": "23471971", "url": "https://pubmed.ncbi.nlm.nih.gov/23471971" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P51809-1", "protein_name": "Vesicle-associated membrane protein 7", "gene_name": "VAMP7", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P51809", "url": "https://www.uniprot.org/uniprotkb/P51809" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 45, 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"2023-12-10", "authors": "Gasparotto Matteo, Dall'Ara Elena, Vacca Marcella, Filippini Francesco", "reference": { "type": "PubMed", "id": "38139155", "url": "https://pubmed.ncbi.nlm.nih.gov/38139155" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P51809-1", "protein_name": "Vesicle-associated membrane protein 7", "gene_name": "VAMP7", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P51809", "url": "https://www.uniprot.org/uniprotkb/P51809" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.38139155", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { 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component. A new member of the cytokine receptor superfamily with strong homology to gp130.", "journal": "Journal of immunology (Baltimore, Md. : 1950)", "date": "1994", "authors": "Chua AO, Chizzonite R, Desai BB, Truitt TP, Nunes P, Minetti LJ, Warrier RR, Presky DH, Levine JF, Gately MK, et al.", "reference": { "type": "PubMed", "id": "7911493", "url": "https://pubmed.ncbi.nlm.nih.gov/7911493" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P51809-1", "protein_name": "Vesicle-associated membrane protein 7", "gene_name": "VAMP7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07237-1", "protein_name": "Protein disulfide-isomerase", "gene_name": "P4HB", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60674-1", "protein_name": "Tyrosine-protein kinase JAK2", "gene_name": "JAK2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29460-1", "protein_name": "Interleukin-12 subunit beta", "gene_name": "IL12B", "tax_name": "Human" }, { "uniprot_canonical_ac": 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Genet.", "date": "1996", "authors": "D'Esposito M, Ciccodicola A, Gianfrancesco F, Esposito T, Flagiello L, Mazzarella R, Schlessinger D, D'Urso M", "reference": { "type": "PubMed", "id": "8640232", "url": "https://pubmed.ncbi.nlm.nih.gov/8640232" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P51809-1", "protein_name": "Vesicle-associated membrane protein 7", "gene_name": "VAMP7", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P51809", "url": "https://www.uniprot.org/uniprotkb/P51809" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.8640232", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", 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], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Dynamin II binds to the trans-Golgi network.", "journal": "Biochemical and biophysical research communications", "date": "1996", "authors": "Maier O, Knoblich M, Westermann P", "reference": { "type": "PubMed", "id": "8670264", "url": "https://pubmed.ncbi.nlm.nih.gov/8670264" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P51809-1", "protein_name": "Vesicle-associated membrane protein 7", "gene_name": "VAMP7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5X3-1", 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"SNARE-associated protein Snapin", "gene_name": "SNAPIN", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43493-2", "protein_name": "Trans-Golgi network integral membrane protein 2", "gene_name": "TGOLN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13492-1", "protein_name": "Phosphatidylinositol-binding clathrin assembly protein", "gene_name": "PICALM", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q0IIM8-1", "protein_name": "TBC1 domain family member 8B", "gene_name": "TBC1D8B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EC8-1", "protein_name": "Protein YIPF6", "gene_name": "YIPF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q00610-1", "protein_name": "Clathrin heavy chain 1", "gene_name": "CLTC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11142-1", "protein_name": "Heat shock cognate 71 kDa protein", "gene_name": "HSPA8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50570-1", "protein_name": "Dynamin-2", "gene_name": "DNM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49407-1", "protein_name": "Beta-arrestin-1", "gene_name": "ARRB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXS5-1", "protein_name": "AP-1 complex subunit mu-1", "gene_name": "AP1M1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6Q5-1", "protein_name": "AP-1 complex subunit mu-2", "gene_name": "AP1M2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02786-1", "protein_name": "Transferrin receptor protein 1", "gene_name": "TFRC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01968-1", "protein_name": "Inositol polyphosphate 5-phosphatase OCRL", "gene_name": "OCRL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14677-1", "protein_name": "Clathrin interactor 1", "gene_name": "CLINT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02792-1", "protein_name": "Ferritin light chain", "gene_name": "FTL", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60749-1", "protein_name": "Sorting nexin-2", "gene_name": "SNX2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H3P7-1", "protein_name": "Golgi resident protein GCP60", "gene_name": "ACBD3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6QNY0-1", "protein_name": "Biogenesis of lysosome-related organelles complex 1 subunit 3", "gene_name": "BLOC1S3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EV8-1", "protein_name": "Dysbindin", "gene_name": "DTNBP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09496-1", "protein_name": "Clathrin light chain A", "gene_name": "CLTA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02794-1", "protein_name": "Ferritin heavy chain", "gene_name": "FTH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14671-1", "protein_name": "Pumilio homolog 1", "gene_name": "PUM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NBS9-1", "protein_name": "Thioredoxin domain-containing protein 5", "gene_name": "TXNDC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16890-1", "protein_name": "Tumor protein D53", "gene_name": "TPD52L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55327-1", "protein_name": "Tumor protein D52", "gene_name": "TPD52", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5HYK7-1", "protein_name": "SH3 domain-containing protein 19", "gene_name": "SH3D19", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75061-1", "protein_name": "Auxilin", "gene_name": "DNAJC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NUP1-1", "protein_name": "Biogenesis of lysosome-related organelles complex 1 subunit 4", "gene_name": "BLOC1S4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09497-1", "protein_name": "Clathrin light chain B", "gene_name": "CLTB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51148-1", "protein_name": "Ras-related protein Rab-5C", "gene_name": "RAB5C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11717-1", "protein_name": "Cation-independent mannose-6-phosphate receptor", "gene_name": "IGF2R", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20645-1", "protein_name": "Cation-dependent mannose-6-phosphate receptor", "gene_name": "M6PR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NC96-1", "protein_name": "Adaptin ear-binding coat-associated protein 1", "gene_name": "NECAP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05067-1", "protein_name": "Amyloid-beta precursor protein", "gene_name": "APP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96PC3-1", "protein_name": "AP-1 complex subunit sigma-3", "gene_name": "AP1S3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14964-1", "protein_name": "Hepatocyte growth factor-regulated tyrosine kinase substrate", "gene_name": "HGS", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99962-1", "protein_name": "Endophilin-A1", "gene_name": "SH3GL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UL45-1", "protein_name": "Biogenesis of lysosome-related organelles complex 1 subunit 6", "gene_name": "BLOC1S6", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P51809", "url": "https://www.uniprot.org/uniprotkb/P51809" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.8670264", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 69 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": 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"count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Cytosolic and membrane-associated proteins involved in the recruitment of AP-1 adaptors onto the trans-Golgi network.", "journal": "The Journal of biological chemistry", "date": "1996", "authors": "Seaman MN, Sowerby PJ, Robinson MS", "reference": { "type": "PubMed", "id": "8810314", "url": "https://pubmed.ncbi.nlm.nih.gov/8810314" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P51809-1", "protein_name": "Vesicle-associated membrane protein 7", "gene_name": "VAMP7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84077-1", "protein_name": "ADP-ribosylation factor 1", "gene_name": "ARF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63027-1", "protein_name": "Vesicle-associated membrane protein 2", "gene_name": "VAMP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BV40-1", "protein_name": "Vesicle-associated membrane protein 8", "gene_name": "VAMP8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00161-1", "protein_name": "Synaptosomal-associated protein 23", "gene_name": "SNAP23", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92538-4", "protein_name": "Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1", "gene_name": "GBF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12846-1", "protein_name": "Syntaxin-4", "gene_name": "STX4", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P51809", "url": "https://www.uniprot.org/uniprotkb/P51809" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.8810314", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "uniprot_canonical_ac", 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"uniprot_canonical_ac": "O00189-1", "protein_name": "AP-4 complex subunit mu-1", "gene_name": "AP4M1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61966-1", "protein_name": "AP-1 complex subunit sigma-1A", "gene_name": "AP1S1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75843-1", "protein_name": "AP-1 complex subunit gamma-like 2", "gene_name": "AP1G2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6B7-1", "protein_name": "AP-4 complex subunit beta-1", "gene_name": "AP4B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43747-1", "protein_name": "AP-1 complex subunit gamma-1", "gene_name": "AP1G1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84077-1", "protein_name": "ADP-ribosylation factor 1", "gene_name": "ARF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q10567-1", "protein_name": "AP-1 complex subunit beta-1", "gene_name": "AP1B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y587-1", "protein_name": "AP-4 complex subunit sigma-1", "gene_name": "AP4S1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPM8-1", "protein_name": "AP-4 complex subunit epsilon-1", "gene_name": "AP4E1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IUQ0-1", "protein_name": "Clavesin-1", "gene_name": "CLVS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5SYC1-1", "protein_name": "Clavesin-2", "gene_name": "CLVS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15586-1", "protein_name": "N-acetylglucosamine-6-sulfatase", "gene_name": "GNS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63027-1", "protein_name": "Vesicle-associated membrane protein 2", "gene_name": "VAMP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBR2-1", "protein_name": "Cathepsin Z", "gene_name": "CTSZ", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43633-1", "protein_name": "Charged multivesicular body protein 2a", "gene_name": "CHMP2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BV40-1", "protein_name": "Vesicle-associated membrane protein 8", "gene_name": "VAMP8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00115-1", "protein_name": "Deoxyribonuclease-2-alpha", "gene_name": "DNASE2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78537-1", "protein_name": "Biogenesis of lysosome-related organelles complex 1 subunit 1", "gene_name": "BLOC1S1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q00610-1", "protein_name": "Clathrin heavy chain 1", "gene_name": "CLTC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11142-1", "protein_name": "Heat shock cognate 71 kDa protein", "gene_name": "HSPA8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50570-1", "protein_name": "Dynamin-2", "gene_name": "DNM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49407-1", "protein_name": "Beta-arrestin-1", "gene_name": "ARRB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXS5-1", "protein_name": "AP-1 complex subunit mu-1", "gene_name": "AP1M1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6Q5-1", "protein_name": "AP-1 complex subunit mu-2", "gene_name": "AP1M2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09496-1", "protein_name": "Clathrin light chain A", "gene_name": "CLTA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NBS9-1", "protein_name": "Thioredoxin domain-containing protein 5", "gene_name": "TXNDC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75061-1", "protein_name": "Auxilin", "gene_name": "DNAJC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09497-1", "protein_name": "Clathrin light chain B", "gene_name": "CLTB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20645-1", "protein_name": "Cation-dependent mannose-6-phosphate receptor", "gene_name": "M6PR", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05067-1", "protein_name": "Amyloid-beta precursor protein", "gene_name": "APP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96PC3-1", "protein_name": "AP-1 complex subunit sigma-3", "gene_name": "AP1S3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14964-1", "protein_name": "Hepatocyte growth factor-regulated tyrosine kinase substrate", "gene_name": "HGS", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99962-1", "protein_name": "Endophilin-A1", "gene_name": "SH3GL2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P51809", "url": "https://www.uniprot.org/uniprotkb/P51809" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.9733768", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 35 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Identification of a STAT4 binding site in the interleukin-12 receptor required for signaling.", "journal": "The Journal of biological chemistry", "date": "1999", "authors": "Naeger LK, McKinney J, Salvekar A, Hoey T", "reference": { "type": "PubMed", "id": "9890938", "url": "https://pubmed.ncbi.nlm.nih.gov/9890938" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P51809-1", "protein_name": "Vesicle-associated membrane protein 7", "gene_name": "VAMP7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07237-1", "protein_name": "Protein disulfide-isomerase", "gene_name": "P4HB", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60674-1", "protein_name": "Tyrosine-protein kinase JAK2", "gene_name": "JAK2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29460-1", "protein_name": "Interleukin-12 subunit beta", "gene_name": "IL12B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14765-1", "protein_name": "Signal transducer and activator of transcription 4", "gene_name": "STAT4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29597-1", "protein_name": "Non-receptor tyrosine-protein kinase TYK2", "gene_name": "TYK2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99665-1", "protein_name": "Interleukin-12 receptor subunit beta-2", "gene_name": "IL12RB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29459-1", "protein_name": "Interleukin-12 subunit alpha", "gene_name": "IL12A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42701-1", "protein_name": "Interleukin-12 receptor subunit beta-1", "gene_name": "IL12RB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23458-1", "protein_name": "Tyrosine-protein kinase JAK1", "gene_name": "JAK1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P51809", "url": "https://www.uniprot.org/uniprotkb/P51809" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 678, "end_pos": 678, "sequence_org": "Y", "sequence_mut": "F", "comment": "No loss of STAT4 activation. No loss of SOCS3 binding.", "evidence": [ { "database": "UniProtKB", "id": "Q99665", "url": "https://www.uniprot.org/uniprotkb/Q99665" }, { "database": "PubMed", "id": "14559241", "url": "https://pubmed.ncbi.nlm.nih.gov/14559241" }, { "database": "PubMed", "id": "9890938", "url": "https://pubmed.ncbi.nlm.nih.gov/9890938" }, { "database": "PubMed", "id": "10198225", "url": "https://pubmed.ncbi.nlm.nih.gov/10198225" } ], "uniprot_canonical_ac": "Q99665-1" }, { "start_pos": 767, "end_pos": 767, "sequence_org": "Y", "sequence_mut": "F", "comment": "No loss of STAT4 activation. No loss of SOCS3 binding.", "evidence": [ { "database": "UniProtKB", "id": "Q99665", "url": "https://www.uniprot.org/uniprotkb/Q99665" }, { "database": "PubMed", "id": "14559241", "url": "https://pubmed.ncbi.nlm.nih.gov/14559241" }, { "database": "PubMed", "id": "9890938", "url": "https://pubmed.ncbi.nlm.nih.gov/9890938" }, { "database": "PubMed", "id": "10198225", "url": "https://pubmed.ncbi.nlm.nih.gov/10198225" } ], "uniprot_canonical_ac": "Q99665-1" }, { "start_pos": 800, "end_pos": 800, "sequence_org": "Y", "sequence_mut": "F", "comment": "Loss of STAT4 activation. Abolishes SOCS3 binding.", "evidence": [ { "database": "UniProtKB", "id": "Q99665", "url": "https://www.uniprot.org/uniprotkb/Q99665" }, { "database": "PubMed", "id": "14559241", "url": "https://pubmed.ncbi.nlm.nih.gov/14559241" }, { "database": "PubMed", "id": "9890938", "url": "https://pubmed.ncbi.nlm.nih.gov/9890938" }, { "database": "PubMed", "id": "10198225", "url": "https://pubmed.ncbi.nlm.nih.gov/10198225" } ], "uniprot_canonical_ac": "Q99665-1" } ], "phosphorylation": [ { "start_pos": 800, "end_pos": 800, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "Q99665", "url": "https://www.uniprot.org/uniprotkb/Q99665" }, { "database": "PubMed", "id": "10415122", "url": "https://pubmed.ncbi.nlm.nih.gov/10415122" }, { "database": "IntAct", "id": "Q99665", "url": "https://www.ebi.ac.uk/intact/interactors/id:Q99665*" }, { "database": "iPTMnet", "id": "Q99665", "url": 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"o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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"IKBKB", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9UHD2", "url": "https://www.uniprot.org/uniprotkb/Q9UHD2" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 36, "end_pos": 36, "kinase_uniprot_canonical_ac": "O14920-1", "kinase_gene_name": "IKBKB", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P25963", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P25963" }, { "database": "PubMed", "id": "10783893", "url": "https://pubmed.ncbi.nlm.nih.gov/10783893" }, { "database": "PubMed", "id": "8601309", "url": "https://pubmed.ncbi.nlm.nih.gov/8601309" }, { "database": "PubMed", "id": "9721103", "url": "https://pubmed.ncbi.nlm.nih.gov/9721103" }, { "database": "PubMed", "id": "9346484", "url": "https://pubmed.ncbi.nlm.nih.gov/9346484" }, { "database": "PubMed", "id": "9346485", 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"gene_name": "PTPN9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NZH6-1", "protein_name": "Interleukin-37", "gene_name": "IL37", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6IA17-1", "protein_name": "Single Ig IL-1-related receptor", "gene_name": "SIGIRR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05209-1", "protein_name": "Tyrosine-protein phosphatase non-receptor type 12", "gene_name": "PTPN12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29350-1", "protein_name": "Tyrosine-protein phosphatase non-receptor type 6", "gene_name": "PTPN6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H3S7-1", "protein_name": "Tyrosine-protein phosphatase non-receptor type 23", "gene_name": "PTPN23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29074-1", "protein_name": "Tyrosine-protein phosphatase non-receptor type 4", "gene_name": "PTPN4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13478-1", "protein_name": "Interleukin-18 receptor 1", "gene_name": 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"reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.12809600", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 21 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Toll/IL-1 receptor domain-containing adapter inducing IFN-beta (TRIF) associates with TNF receptor-associated factor 6 and TANK-binding kinase 1, and activates two distinct transcription factors, NF-kappa B and IFN-regulatory factor-3, in the Toll-like receptor signaling.", "journal": "J. 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"glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The IL-1 family member 7b translocates to the nucleus and down-regulates proinflammatory cytokines.", "journal": "Journal of immunology (Baltimore, Md. : 1950)", "date": "2008", "authors": "Sharma S, Kulk N, Nold MF, Graf R, Kim SH, Reinhardt D, Dinarello CA, Bufler P", "reference": { "type": "PubMed", "id": "18390730", "url": "https://pubmed.ncbi.nlm.nih.gov/18390730" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9UHD2-1", "protein_name": "Serine/threonine-protein kinase TBK1", "gene_name": "TBK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29466-1", "protein_name": "Caspase-1", "gene_name": "CASP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P43378-1", "protein_name": "Tyrosine-protein phosphatase non-receptor type 9", "gene_name": "PTPN9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NZH6-1", "protein_name": "Interleukin-37", "gene_name": "IL37", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6IA17-1", "protein_name": "Single Ig IL-1-related receptor", "gene_name": "SIGIRR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05209-1", "protein_name": "Tyrosine-protein phosphatase non-receptor type 12", "gene_name": "PTPN12", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29350-1", "protein_name": "Tyrosine-protein phosphatase non-receptor type 6", "gene_name": "PTPN6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H3S7-1", "protein_name": "Tyrosine-protein phosphatase non-receptor type 23", "gene_name": "PTPN23", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29074-1", "protein_name": "Tyrosine-protein phosphatase non-receptor type 4", "gene_name": "PTPN4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13478-1", "protein_name": "Interleukin-18 receptor 1", "gene_name": "IL18R1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84022-1", "protein_name": "SMAD family member 3", "gene_name": "SMAD3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q06124-2", "protein_name": "Tyrosine-protein phosphatase non-receptor type 11", "gene_name": "PTPN11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P54829-1", "protein_name": "Tyrosine-protein phosphatase non-receptor type 5", "gene_name": "PTPN5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17706-1", "protein_name": "Tyrosine-protein phosphatase non-receptor type 2", "gene_name": "PTPN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40763-1", "protein_name": "Signal transducer and activator of transcription 3", "gene_name": "STAT3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95998-2", "protein_name": "Interleukin-18-binding protein", "gene_name": "IL18BP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12923-1", "protein_name": "Tyrosine-protein phosphatase non-receptor type 13", "gene_name": "PTPN13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q4JDL3-1", "protein_name": "Tyrosine-protein phosphatase non-receptor type 20", "gene_name": "PTPN20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15678-1", "protein_name": "Tyrosine-protein phosphatase non-receptor type 14", "gene_name": "PTPN14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35236-1", "protein_name": "Tyrosine-protein phosphatase non-receptor type 7", "gene_name": "PTPN7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99952-1", "protein_name": "Tyrosine-protein phosphatase non-receptor type 18", "gene_name": "PTPN18", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9UHD2", "url": "https://www.uniprot.org/uniprotkb/Q9UHD2" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.18390730", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 21 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] } ]