[ { "title": "Elucidation of Hydrogen Bonding Patterns in Ligand-Free, Lactose- and Glycerol-Bound Galectin-3C by Neutron Crystallography to Guide Drug Design.", "journal": "Journal of medicinal chemistry", "date": "2018-05-24", "authors": "Manzoni Francesco, Wallerstein Johan, Schrader Tobias E, Ostermann Andreas, Coates Leighton, Akke Mikael, Blakeley Matthew P, Oksanen Esko, Logan Derek T", "reference": { "type": "PubMed", "id": "29672051", "url": "https://pubmed.ncbi.nlm.nih.gov/29672051" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P17931-1", "protein_name": "Galectin-3", "gene_name": "LGALS3", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P17931", "url": "https://www.uniprot.org/uniprotkb/P17931" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.29672051", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Designing interactions by control of protein-ligand complex conformation: tuning arginine-arene interaction geometry for enhanced electrostatic protein-ligand interactions.", "journal": "Chemical science", "date": "2018-01-28", "authors": "Noresson A-L, Aurelius O, \u00d6berg C T, Engstr\u00f6m O, Sundin A P, H\u00e5kansson M, Stenstr\u00f6m O, Akke M, Logan D T, Leffler H, Nilsson U J", "reference": { "type": "PubMed", "id": "29675148", "url": "https://pubmed.ncbi.nlm.nih.gov/29675148" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P17931-1", "protein_name": "Galectin-3", "gene_name": "LGALS3", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P17931", "url": "https://www.uniprot.org/uniprotkb/P17931" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.29675148", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Crystallization of a human galectin-3 variant with two ordered segments in the shortened N-terminal tail.", "journal": "Scientific reports", "date": "2018-06-29", "authors": "Flores-Ibarra Andrea, V\u00e9rtesy Sabine, Medrano Francisco J, Gabius Hans-Joachim, Romero Antonio", "reference": { "type": "PubMed", "id": "29959397", "url": "https://pubmed.ncbi.nlm.nih.gov/29959397" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P17931-1", "protein_name": "Galectin-3", "gene_name": "LGALS3", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P17931", "url": "https://www.uniprot.org/uniprotkb/P17931" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.29959397", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Interplay between Conformational Entropy and Solvation Entropy in Protein-Ligand Binding.", "journal": "Journal of the American Chemical Society", "date": "2019-02-06", "authors": "Verteramo Maria Luisa, Stenstr\u00f6m Olof, Ignjatovi\u0107 Majda Misini, Caldararu Octav, Olsson Martin A, Manzoni Francesco, Leffler Hakon, Oksanen Esko, Logan Derek T, Nilsson Ulf J, Ryde Ulf, Akke Mikael", "reference": { "type": "PubMed", "id": "30618244", "url": "https://pubmed.ncbi.nlm.nih.gov/30618244" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P17931-1", "protein_name": "Galectin-3", "gene_name": "LGALS3", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P17931", "url": "https://www.uniprot.org/uniprotkb/P17931" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.30618244", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Substituted polyfluoroaryl interactions with an arginine side chain in galectin-3 are governed by steric-, desolvation and electronic conjugation effects.", "journal": "Organic & biomolecular chemistry", "date": "2019-01-31", "authors": "Kumar Rohit, Peterson Kristoffer, Misini Ignjatovi\u0107 Majda, Leffler Hakon, Ryde Ulf, Nilsson Ulf J, Logan Derek T", "reference": { "type": "PubMed", "id": "30632578", "url": "https://pubmed.ncbi.nlm.nih.gov/30632578" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P17931-1", "protein_name": "Galectin-3", "gene_name": "LGALS3", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P17931", "url": "https://www.uniprot.org/uniprotkb/P17931" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.30632578", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Structure and Energetics of Ligand-Fluorine Interactions with Galectin-3 Backbone and Side-Chain Amides: Insight into Solvation Effects and Multipolar Interactions.", "journal": "ChemMedChem", "date": "2019-08-20", "authors": "Kumar Rohit, Ignjatovi\u0107 Majda Misini, Peterson Kristoffer, Olsson Martin, Leffler Hakon, Ryde Ulf, Nilsson Ulf J, Logan Derek T", "reference": { "type": "PubMed", "id": "31246331", "url": "https://pubmed.ncbi.nlm.nih.gov/31246331" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P17931-1", "protein_name": "Galectin-3", "gene_name": "LGALS3", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P17931", "url": "https://www.uniprot.org/uniprotkb/P17931" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.31246331", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Are crystallographic B-factors suitable for calculating protein conformational entropy?", "journal": "Physical chemistry chemical physics : PCCP", "date": "2019-08-21", "authors": "Caldararu Octav, Kumar Rohit, Oksanen Esko, Logan Derek T, Ryde Ulf", "reference": { "type": "PubMed", "id": "31389436", "url": "https://pubmed.ncbi.nlm.nih.gov/31389436" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P17931-1", "protein_name": "Galectin-3", "gene_name": "LGALS3", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P17931", "url": "https://www.uniprot.org/uniprotkb/P17931" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.31389436", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Linear triazole-linked pseudo oligogalactosides as scaffolds for galectin inhibitor development.", "journal": "Chemical biology & drug design", "date": "2020-10", "authors": "Dussouy Christophe, Kishor Chandan, Lambert Annie, Lamoureux Cl\u00e9ment, Blanchard Helen, Grandjean Cyrille", "reference": { "type": "PubMed", "id": "32220037", "url": "https://pubmed.ncbi.nlm.nih.gov/32220037" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P17931-1", "protein_name": "Galectin-3", "gene_name": "LGALS3", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P17931", "url": "https://www.uniprot.org/uniprotkb/P17931" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.32220037", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Current status and future opportunities for serial crystallography at MAX IV Laboratory.", "journal": "Journal of synchrotron radiation", "date": "2020-09-01", "authors": "Shilova Anastasya, Lebrette Hugo, Aurelius Oskar, Nan Jie, Welin Martin, Kovacic Rebeka, Ghosh Swagatha, Safari Cecilia, Friel Ross J, Milas Mirko, Matej Zdenek, H\u00f6gbom Martin, Br\u00e4nd\u00e9n Gisela, Kloos Marco, Shoeman Robert L, Doak Bruce, Ursby Thomas, H\u00e5kansson Maria, Logan Derek T, Mueller Uwe", "reference": { "type": "PubMed", "id": "32876583", "url": "https://pubmed.ncbi.nlm.nih.gov/32876583" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P17931-1", "protein_name": "Galectin-3", "gene_name": "LGALS3", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P17931", "url": "https://www.uniprot.org/uniprotkb/P17931" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.32876583", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Topsy-turvy binding of negatively charged homogalacturonan oligosaccharides to galectin-3.", "journal": "Glycobiology", "date": "2021-04-01", "authors": "Zheng Yi, Su Jiyong, Miller Michelle C, Geng Jie, Xu Xuejiao, Zhang Tao, Mayzel Maksim, Zhou Yifa, Mayo Kevin H, Tai Guihua", "reference": { "type": "PubMed", "id": "32909036", "url": "https://pubmed.ncbi.nlm.nih.gov/32909036" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P17931-1", "protein_name": "Galectin-3", "gene_name": "LGALS3", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P17931", "url": "https://www.uniprot.org/uniprotkb/P17931" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.32909036", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Hyperinflammation and Fibrosis in Severe COVID-19 Patients: Galectin-3, a Target Molecule to Consider.", "journal": "Frontiers in immunology", "date": "2020", "authors": "Garcia-Revilla J, Deierborg T, Venero JL, Boza-Serrano A", "reference": { "type": "PubMed", "id": "32973815", "url": "https://pubmed.ncbi.nlm.nih.gov/32973815" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P17931-1", "protein_name": "Galectin-3", "gene_name": "LGALS3", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P17931", "url": "https://www.uniprot.org/uniprotkb/P17931" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "biomarkers": [ { "best_biomarker_role": [ "prognostic" ], "biomarker_canonical_id": "AN6442", "assessed_biomarker_entity": [ "Galectin-3" ], "biomarker_id": "AN6442-1", "biomarker": [ "increased LGALS3 level" ], "condition": { "id": "DOID:0080600", "recommended_name": { "id": "DOID:0080600", "resource": "Disease Ontology", "url": "https://disease-ontology.org/term/DOID:0080600", "name": "COVID-19", "description": "A Coronavirus infectious disease that is characterized by fever, cough and shortness of breath and that has_material_basis_in Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), a subtype of Betacoronavirus pandemicum." }, "name_list": [ "COVID-19", "2019 Novel Coronavirus (2019-nCoV)", "2019-nCoV infection", "COVID19", "SARS-CoV-2 infection", "2019 novel coronavirus infection", "coronavirus disease 2019", "severe acute respiratory syndrome coronavirus 2 infectious disease", "2019 novel coronavirus", "2019-nCoV", "SARS-CoV-2", "SARS-coronavirus 2", "beta-CoV", "beta-CoVs", "betacoronavirus", "severe acute respiratory syndrome coronavirus 2", "-CoV", "-CoVs", "-coronavirus" ], "id_list": [ "DOID:0080600", "MONDO:0100096" ] } } ], "record_id": "pubmed.32973815", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Effective rational humanization of a PASylated anti-galectin-3 Fab for the sensitive PET imaging of thyroid cancer in vivo.", "journal": "Scientific reports", "date": "2021-04-01", "authors": "Peplau Emanuel, De Rose Francesco, Eichinger Andreas, Reder Sybille, Mittelh\u00e4user Markus, Scafetta Giorgia, Schwaiger Markus, Weber Wolfgang A, Bartolazzi Armando, D'Alessandria Calogero, Skerra Arne", "reference": { "type": "PubMed", "id": "33795750", "url": "https://pubmed.ncbi.nlm.nih.gov/33795750" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P17931-1", "protein_name": "Galectin-3", "gene_name": "LGALS3", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P17931", "url": "https://www.uniprot.org/uniprotkb/P17931" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.33795750", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Structural Insights into the Molecular Recognition Mechanism of the Cancer and Pathogenic Epitope, LacdiNAc by Immune-Related Lectins.", "journal": "Chemistry (Weinheim an der Bergstrasse, Germany)", "date": "2021-05-20", "authors": "Lima Carlos D L, Coelho Helena, Gimeno Ana, Trov\u00e3o Filipa, Diniz Ana, Dias Jorge S, Jim\u00e9nez-Barbero Jes\u00fas, Corzana Francisco, Carvalho Ana Lu\u00edsa, Cabrita Eurico J, Marcelo Filipa", "reference": { "type": "PubMed", "id": "33826192", "url": "https://pubmed.ncbi.nlm.nih.gov/33826192" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P17931-1", "protein_name": "Galectin-3", "gene_name": "LGALS3", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P17931", "url": "https://www.uniprot.org/uniprotkb/P17931" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.33826192", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The Role of Galectin-3 and ST2 in Cardiology: A Short Review.", "journal": "Biomolecules", "date": "2021-08-07", "authors": "Merino-Merino Ana, Gonzalez-Bernal Jeronimo, Fernandez-Zoppino Dario, Saez-Maleta Ruth, Perez-Rivera Jose-Angel", "reference": { "type": "PubMed", "id": "34439833", "url": "https://pubmed.ncbi.nlm.nih.gov/34439833" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P17931-1", "protein_name": "Galectin-3", "gene_name": "LGALS3", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P17931", "url": "https://www.uniprot.org/uniprotkb/P17931" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.34439833", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Relationship between Circulating Galectin-3, Systemic Inflammation, and Protein-Energy Wasting in Chronic Hemodialysis Patients.", "journal": "Nutrients", "date": "2021-08-16", "authors": "Tsai Ming-Tsun, Ou Shuo-Ming, Chen Huan-Yuan, Tseng Wei-Cheng, Lee Kuo-Hua, Yang Chih-Yu, Yang Ruey-Bing, Tarng Der-Cherng", "reference": { "type": "PubMed", "id": "34444962", "url": "https://pubmed.ncbi.nlm.nih.gov/34444962" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P17931-1", "protein_name": "Galectin-3", "gene_name": "LGALS3", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P17931", "url": "https://www.uniprot.org/uniprotkb/P17931" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.34444962", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Predictors of Total Mortality and Serious Arrhythmic Events in Non-Ischemic Heart Failure Patients: The Role of Galectin-3.", "journal": "Arquivos brasileiros de cardiologia", "date": "2021-09", "authors": "Kochi Adriano Nunes, Pimentel Mauricio, Andrades Michael, Zimerman Tiago, Zimerman Leandro Ioschpe, Rohde Luis Eduardo", "reference": { "type": "PubMed", "id": "34550239", "url": "https://pubmed.ncbi.nlm.nih.gov/34550239" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P17931-1", "protein_name": "Galectin-3", "gene_name": "LGALS3", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P17931", "url": "https://www.uniprot.org/uniprotkb/P17931" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.34550239", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Nutrient-responsive O-GlcNAcylation dynamically modulates the secretion of glycan-binding protein galectin 3.", "journal": "The Journal of biological chemistry", "date": "2022", "authors": "Mathew MP, Abramowitz LK, Donaldson JG, Hanover JA", "reference": { "type": "PubMed", "id": "35183508", "url": "https://pubmed.ncbi.nlm.nih.gov/35183508" }, "referenced_glycans": [ { "glytoucan_ac": "G49108TO" } ], "referenced_proteins": [ { "uniprot_canonical_ac": "P17931-1", "protein_name": "Galectin-3", "gene_name": "LGALS3", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P17931", "url": "https://www.uniprot.org/uniprotkb/P17931" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "glycosylation": [ { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "T", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_pos": 104, "start_aa": "Thr", "end_pos": 104, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr104", "evidence": [ { "id": "35183508", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/35183508" }, { "id": "P17931", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/P17931" } ], "filter_code": "000000000000000010000.xxxxxxx.00000001000000.xxxxxxx.xxxxxxxxxx.xxxxxxxxxxxxxxxxxx.xxxxx.01001", "uniprot_canonical_ac": "P17931-1" }, { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "T", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_pos": 243, "start_aa": "Thr", "end_pos": 243, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr243", "evidence": [ { "id": "35183508", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/35183508" }, { "id": "P17931", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/P17931" } ], "filter_code": "000000000000000010000.xxxxxxx.00000001000000.xxxxxxx.xxxxxxxxxx.xxxxxxxxxxxxxxxxxx.xxxxx.01001", "uniprot_canonical_ac": "P17931-1" }, { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_pos": 91, "start_aa": "Ser", "end_pos": 91, "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser91", "evidence": [ { "id": "35183508", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/35183508" }, { "id": "P17931", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/P17931" } ], "filter_code": "000000000000000100000.xxxxxxx.00000001000000.xxxxxxx.xxxxxxxxxx.xxxxxxxxxxxxxxxxxx.xxxxx.01000", "uniprot_canonical_ac": "P17931-1" }, { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "start_pos": 92, "start_aa": "Ser", "end_pos": 92, "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser92", "evidence": [ { "id": "35183508", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/35183508" }, { "id": "P17931", "database": "O-GlcNAc Atlas", "url": "https://oglcnac.org/atlas/detail/P17931" } ], "filter_code": "000000000000000100000.xxxxxxx.00000001000000.xxxxxxx.xxxxxxxxxx.xxxxxxxxxxxxxxxxxx.xxxxx.01001", "uniprot_canonical_ac": "P17931-1" }, { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAcylation", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "", "relation": "attached", "comment": "O-GlcNAcylation", "icn3d_view": {}, "evidence": [ { "id": "30397120", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/30397120" }, { "id": "P17931", "database": "O-GlcNAc Database", "url": "https://www.oglcnac.mcw.edu/search/?query_protein=P17931" }, { "id": "16408927", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/16408927" }, { "id": "33214551", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/33214551" }, { "id": "34019948", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/34019948" }, { "id": "28510447", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/28510447" }, { "id": "35183508", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/35183508" }, { "id": "38665916", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/38665916" } ], "filter_code": "000000000000000000000.xxxxxxx.00000001000000.xxxxxxx.xxxxxxxxxx.xxxxxxxxxxxxxxxxxx.xxxxx.01000", "uniprot_canonical_ac": "P17931-1" } ], "record_id": "pubmed.35183508", "abstract": "", "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "glytoucan_ac" ] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 5 }, { "field": "total_sites", "count": 5 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 5 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 5 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 4 }, { "field": "exact_o_linked_sites", "count": 4 }, { "field": "exact_o_linked_glycan_sites", "count": 4 }, { "field": "exact_o_linked_glycans", "count": 1 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl", "filter_code", "uniprot_canonical_ac" ] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 5 }, { "field": "total_sites", "count": 5 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 5 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 5 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 4 }, { "field": "exact_o_linked_sites", "count": 4 }, { "field": "exact_o_linked_glycan_sites", "count": 4 }, { "field": "exact_o_linked_glycans", "count": 1 }, { "field": "fuzzy_sites", "count": 1 }, { "field": "fuzzy_o_linked_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycan_sites", "count": 1 }, { "field": "fuzzy_o_linked_glycans", "count": 1 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl", "filter_code", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Investigation of the Molecular Details of the Interactions of Selenoglycosides and Human Galectin-3.", "journal": "International journal of molecular sciences", "date": "2022-02-24", "authors": "Raics M\u00e1ria, Balogh \u00c1lex K\u00e1lm\u00e1n, Kishor Chandan, Tim\u00e1ri Istv\u00e1n, Medrano Francisco J, Romero Antonio, Go Rob Marc, Blanchard Helen, Szil\u00e1gyi L\u00e1szl\u00f3, E K\u00f6v\u00e9r Katalin, Feh\u00e9r Krisztina", "reference": { "type": "PubMed", "id": "35269646", "url": "https://pubmed.ncbi.nlm.nih.gov/35269646" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P17931-1", "protein_name": "Galectin-3", "gene_name": "LGALS3", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P17931", "url": "https://www.uniprot.org/uniprotkb/P17931" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.35269646", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Novel Selective Galectin-3 Antagonists Are Cytotoxic to Acute Lymphoblastic Leukemia.", "journal": "Journal of medicinal chemistry", "date": "2022-04-28", "authors": "Bum-Erdene Khuchtumur, Collins Patrick M, Hugo Matthew W, Tarighat Somayeh S, Fei Fei, Kishor Chandan, Leffler Hakon, Nilsson Ulf J, Groffen John, Grice I Darren, Heisterkamp Nora, Blanchard Helen", "reference": { "type": "PubMed", "id": "35427125", "url": "https://pubmed.ncbi.nlm.nih.gov/35427125" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P17931-1", "protein_name": "Galectin-3", "gene_name": "LGALS3", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P17931", "url": "https://www.uniprot.org/uniprotkb/P17931" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.35427125", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Identification of Monosaccharide Derivatives as Potent, Selective, and Orally Bioavailable Inhibitors of Human and Mouse Galectin-3.", "journal": "Journal of medicinal chemistry", "date": "2022-08-25", "authors": "Liu Chunjian, Jalagam Prasada Rao, Feng Jianxin, Wang Wei, Raja Thiruvenkadam, Sura Mallikarjuna Reddy, Manepalli Raju K V L P, Aliphedi Bheema Reddy, Medavarapu Santosh, Nair Satheesh K, Muthalagu Vetrichelvan, Natesan Ramesh, Gupta Anuradha, Beno Brett, Panda Manoranjan, Ghosh Kaushik, Shukla Jinal Kaushikkumar, Sale Harinath, Haldar Priyanka, Kalidindi Narasimharaju, Shah Devang, Patel Dipal, Mathur Arvind, Ellsworth Bruce A, Cheng Dong, Regueiro-Ren Alicia", "reference": { "type": "PubMed", "id": "35969688", "url": "https://pubmed.ncbi.nlm.nih.gov/35969688" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P17931-1", "protein_name": "Galectin-3", "gene_name": "LGALS3", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P17931", "url": "https://www.uniprot.org/uniprotkb/P17931" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.35969688", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Discovery and Optimization of the First Highly Effective and Orally Available Galectin-3 Inhibitors for Treatment of Fibrotic Disease.", "journal": "Journal of medicinal chemistry", "date": "2022-10-13", "authors": "Zetterberg Fredrik R, MacKinnon Alison, Brimert Thomas, Gravelle Lise, Johnsson Richard E, Kahl-Knutson Barbro, Leffler Hakon, Nilsson Ulf J, Pedersen Anders, Peterson Kristoffer, Roper James A, Schambye Hans, Slack Robert J, Tantawi Susan", "reference": { "type": "PubMed", "id": "36154172", "url": "https://pubmed.ncbi.nlm.nih.gov/36154172" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P17931-1", "protein_name": "Galectin-3", "gene_name": "LGALS3", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P17931", "url": "https://www.uniprot.org/uniprotkb/P17931" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.36154172", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Oxidative stress and galectin-3 levels during skin grafting after hand injury: gender differences.", "journal": "Cellular and molecular biology (Noisy-le-Grand, France)", "date": "2024-07-28", "authors": "Andric Kristina, Jakovljevic Vladimir, Zivkovic Vladimir, Veselinovic Mirjana, Bolevicg Sergey, Petrovich Fisenko Vladimir, Joksimovic Jovic Jovana, Andjic Marijana, Lazarevic Nevena, Andric Nikola, Dimkic Milenkovic Andjela, Vulovic Dejan", "reference": { "type": "PubMed", "id": "39097896", "url": "https://pubmed.ncbi.nlm.nih.gov/39097896" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P17931-1", "protein_name": "Galectin-3", "gene_name": "LGALS3", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P17931", "url": "https://www.uniprot.org/uniprotkb/P17931" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.39097896", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Decreased expression of galectin-3 in the epidermis of psoriasis patients.", "journal": "European journal of dermatology : EJD", "date": "2024-08-01", "authors": "Zhou Xin, Su Jing, Zhang Chun-Lei, Dai Hui, Wang Wen-Hui", "reference": { "type": "PubMed", "id": "39193673", "url": "https://pubmed.ncbi.nlm.nih.gov/39193673" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P17931-1", "protein_name": "Galectin-3", "gene_name": "LGALS3", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P17931", "url": "https://www.uniprot.org/uniprotkb/P17931" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.39193673", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Decreased expression of Mac-2 (carbohydrate binding protein 35) and loss of its nuclear localization are associated with the neoplastic progression of colon carcinoma.", "journal": "Proc. Natl. Acad. Sci. U.S.A.", "date": "1993", "authors": "Lotz M M, Andrews C W, Korzelius C A, Lee E C, Steele G D, Clarke A, Mercurio A M", "reference": { "type": "PubMed", "id": "7682704", "url": "https://pubmed.ncbi.nlm.nih.gov/7682704" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P17931-1", "protein_name": "Galectin-3", "gene_name": "LGALS3", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P17931", "url": "https://www.uniprot.org/uniprotkb/P17931" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.7682704", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "L-29, a soluble lactose-binding lectin, is phosphorylated on serine 6 and serine 12 in vivo and by casein kinase I.", "journal": "The Journal of biological chemistry", "date": "1993", "authors": "Huflejt ME, Turck CW, Lindstedt R, Barondes SH, Leffler H", "reference": { "type": "PubMed", "id": "8253806", "url": "https://pubmed.ncbi.nlm.nih.gov/8253806" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P17931-1", "protein_name": "Galectin-3", "gene_name": "LGALS3", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P17931", "url": "https://www.uniprot.org/uniprotkb/P17931" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 12, "end_pos": 12, "kinase_uniprot_canonical_ac": "P19784-1", "kinase_gene_name": "CSNK2A2", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P17931", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P17931" }, { "database": "PubMed", "id": "8253806", "url": "https://pubmed.ncbi.nlm.nih.gov/8253806" } ], "site_lbl": "Ser12", "uniprot_canonical_ac": "P17931-1" }, { "start_pos": 12, "end_pos": 12, "kinase_uniprot_canonical_ac": "P48729-1", "kinase_gene_name": "CSNK1A1", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P17931", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P17931" }, { "database": "PubMed", "id": "8253806", "url": "https://pubmed.ncbi.nlm.nih.gov/8253806" } ], "site_lbl": "Ser12", "uniprot_canonical_ac": "P17931-1" }, { "start_pos": 12, "end_pos": 12, "kinase_uniprot_canonical_ac": "P68400-1", "kinase_gene_name": "CSNK2A1", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P17931", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P17931" }, { "database": "PubMed", "id": "8253806", "url": "https://pubmed.ncbi.nlm.nih.gov/8253806" } ], "site_lbl": "Ser12", "uniprot_canonical_ac": "P17931-1" }, { "start_pos": 12, "end_pos": 12, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P17931", "url": "https://www.uniprot.org/uniprotkb/P17931" }, { "database": "PubMed", "id": "8253806", "url": "https://pubmed.ncbi.nlm.nih.gov/8253806" }, { "database": "iPTMnet", "id": "P17931", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P17931" } ], "site_lbl": "Ser12", "uniprot_canonical_ac": "P17931-1" }, { "start_pos": 6, "end_pos": 6, "kinase_uniprot_canonical_ac": "P19784-1", "kinase_gene_name": "CSNK2A2", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P17931", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P17931" }, { "database": "PubMed", "id": "10961987", "url": "https://pubmed.ncbi.nlm.nih.gov/10961987" }, { "database": "PubMed", "id": "8253806", "url": "https://pubmed.ncbi.nlm.nih.gov/8253806" } ], "site_lbl": "Ser6", "uniprot_canonical_ac": "P17931-1" }, { "start_pos": 6, "end_pos": 6, "kinase_uniprot_canonical_ac": "P48729-1", "kinase_gene_name": "CSNK1A1", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P17931", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P17931" }, { "database": "PubMed", "id": "10961987", "url": "https://pubmed.ncbi.nlm.nih.gov/10961987" }, { "database": "PubMed", "id": "8253806", "url": "https://pubmed.ncbi.nlm.nih.gov/8253806" }, { "database": "PubMed", "id": "15121858", "url": "https://pubmed.ncbi.nlm.nih.gov/15121858" } ], "site_lbl": "Ser6", "uniprot_canonical_ac": "P17931-1" }, { "start_pos": 6, "end_pos": 6, "kinase_uniprot_canonical_ac": "P68400-1", "kinase_gene_name": "CSNK2A1", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P17931", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P17931" }, { "database": "PubMed", "id": "10961987", "url": "https://pubmed.ncbi.nlm.nih.gov/10961987" }, { "database": "PubMed", "id": "8253806", "url": "https://pubmed.ncbi.nlm.nih.gov/8253806" } ], "site_lbl": "Ser6", "uniprot_canonical_ac": "P17931-1" }, { "start_pos": 6, "end_pos": 6, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P17931", "url": "https://www.uniprot.org/uniprotkb/P17931" }, { "database": "PubMed", "id": "8253806", "url": "https://pubmed.ncbi.nlm.nih.gov/8253806" }, { "database": "iPTMnet", "id": "P17931", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P17931" }, { "database": "PubMed", "id": "10961987", "url": "https://pubmed.ncbi.nlm.nih.gov/10961987" }, { "database": "PubMed", "id": "15121858", "url": "https://pubmed.ncbi.nlm.nih.gov/15121858" }, { "database": "PubMed", "id": "16322222", "url": "https://pubmed.ncbi.nlm.nih.gov/16322222" }, { "database": "PubMed", "id": "19453521", "url": "https://pubmed.ncbi.nlm.nih.gov/19453521" }, { "database": "PubMed", "id": "26911284", "url": "https://pubmed.ncbi.nlm.nih.gov/26911284" } ], "site_lbl": "Ser6", "uniprot_canonical_ac": "P17931-1" } ], "record_id": "pubmed.8253806", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 8 }, { "field": "total_sites", "count": 2 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Mapping of the galectin-3 gene (LGALS3) to human chromosome 14 at region 14q21-22.", "journal": "Mammalian genome : official journal of the International Mammalian Genome Society", "date": "1997", "authors": "Raimond J, Zimonjic DB, Mignon C, Mattei M, Popescu NC, Monsigny M, Legrand A", "reference": { "type": "PubMed", "id": "9271684", "url": "https://pubmed.ncbi.nlm.nih.gov/9271684" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P17931-1", "protein_name": "Galectin-3", "gene_name": "LGALS3", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P17931", "url": "https://www.uniprot.org/uniprotkb/P17931" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.9271684", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The human LGALS3 (galectin-3) gene: determination of the gene structure and functional characterization of the promoter.", "journal": "Arch. Biochem. Biophys.", "date": "1998", "authors": "Kadrofske M M, Openo K P, Wang J L", "reference": { "type": "PubMed", "id": "9439577", "url": "https://pubmed.ncbi.nlm.nih.gov/9439577" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P17931-1", "protein_name": "Galectin-3", "gene_name": "LGALS3", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P17931", "url": "https://www.uniprot.org/uniprotkb/P17931" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.9439577", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "X-ray crystal structure of the human galectin-3 carbohydrate recognition domain at 2.1-A resolution.", "journal": "J. Biol. Chem.", "date": "1998", "authors": "Seetharaman J, Kanigsberg A, Slaaby R, Leffler H, Barondes S H, Rini J M", "reference": { "type": "PubMed", "id": "9582341", "url": "https://pubmed.ncbi.nlm.nih.gov/9582341" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P17931-1", "protein_name": "Galectin-3", "gene_name": "LGALS3", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P17931", "url": "https://www.uniprot.org/uniprotkb/P17931" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.9582341", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "hSrb7, an essential human Mediator component, acts as a coactivator for the thyroid hormone receptor.", "journal": "Molecular and cellular endocrinology", "date": "2004-07-30", "authors": "Nevado Juli\u00e1n, Tenbaum Stephan P, Aranda Ana", "reference": { "type": "PubMed", "id": "15249124", "url": "https://pubmed.ncbi.nlm.nih.gov/15249124" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13503-1", "protein_name": "Mediator of RNA polymerase II transcription subunit 21", "gene_name": "MED21", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13503", "url": "https://www.uniprot.org/uniprotkb/Q13503" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.15249124", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A mammalian SRB protein associated with an RNA polymerase II holoenzyme.", "journal": "Nature", "date": "1996", "authors": "Chao DM, Gadbois EL, Murray PJ, Anderson SF, Sonu MS, Parvin JD, Young RA", "reference": { "type": "PubMed", "id": "8598913", "url": "https://pubmed.ncbi.nlm.nih.gov/8598913" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13503-1", "protein_name": "Mediator of RNA polymerase II transcription subunit 21", "gene_name": "MED21", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13503", "url": "https://www.uniprot.org/uniprotkb/Q13503" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.8598913", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A human RNA polymerase II complex associated with SRB and DNA-repair proteins.", "journal": "Nature", "date": "1996", "authors": "Maldonado E, Shiekhattar R, Sheldon M, Cho H, Drapkin R, Rickert P, Lees E, Anderson CW, Linn S, Reinberg D", "reference": { "type": "PubMed", "id": "8609996", "url": "https://pubmed.ncbi.nlm.nih.gov/8609996" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13503-1", "protein_name": "Mediator of RNA polymerase II transcription subunit 21", "gene_name": "MED21", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13503", "url": "https://www.uniprot.org/uniprotkb/Q13503" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.8609996", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Transcription activation via enhanced preinitiation complex assembly in a human cell-free system lacking TAFIIs.", "journal": "Molecular cell", "date": "1998-05", "authors": "Oelgeschl\u00e4ger T, Tao Y, Kang Y K, Roeder R G", "reference": { "type": "PubMed", "id": "9660976", "url": "https://pubmed.ncbi.nlm.nih.gov/9660976" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13503-1", "protein_name": "Mediator of RNA polymerase II transcription subunit 21", "gene_name": "MED21", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13503", "url": "https://www.uniprot.org/uniprotkb/Q13503" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.9660976", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A new subfamily of high molecular mass CDC2-related kinases with PITAI/VRE.", "journal": "Biochem. Biophys. Res. Commun.", "date": "2000", "authors": "Marqu\u00e9s F, Moreau J L, Peaucellier G, Lozano J C, Schatt P, Picard A, Callebaut I, Perret E, Genevi\u00e8re A M", "reference": { "type": "PubMed", "id": "11162436", "url": "https://pubmed.ncbi.nlm.nih.gov/11162436" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q14004-1", "protein_name": "Cyclin-dependent kinase 13", "gene_name": "CDK13", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q14004", "url": "https://www.uniprot.org/uniprotkb/Q14004" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.11162436", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Cloning and antisense oligodeoxynucleotide inhibition of a human homolog of cdc2 required in hematopoiesis.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "1992-01-15", "authors": "Lapidot-Lifson Y, Patinkin D, Prody C A, Ehrlich G, Seidman S, Ben-Aziz R, Benseler F, Eckstein F, Zakut H, Soreq H", "reference": { "type": "PubMed", "id": "1731328", "url": "https://pubmed.ncbi.nlm.nih.gov/1731328" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q14004-1", "protein_name": "Cyclin-dependent kinase 13", "gene_name": "CDK13", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q14004", "url": "https://www.uniprot.org/uniprotkb/Q14004" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.1731328", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "CDK13, a new potential human immunodeficiency virus type 1 inhibitory factor regulating viral mRNA splicing.", "journal": "Journal of virology", "date": "2008-07", "authors": "Berro Reem, Pedati Caitlin, Kehn-Hall Kylene, Wu Weilin, Klase Zachary, Even Yasmine, Genevi\u00e8re Anne-Marie, Ammosova Tatiana, Nekhai Sergei, Kashanchi Fatah", "reference": { "type": "PubMed", "id": "18480452", "url": "https://pubmed.ncbi.nlm.nih.gov/18480452" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q14004-1", "protein_name": "Cyclin-dependent kinase 13", "gene_name": "CDK13", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q14004", "url": "https://www.uniprot.org/uniprotkb/Q14004" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.18480452", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Phenotypic and molecular characterisation of CDK13-related congenital heart defects, dysmorphic facial features and intellectual developmental disorders.", "journal": "Genome medicine", "date": "2017", "authors": "Bostwick BL, McLean S, Posey JE, Streff HE, Gripp KW, Blesson A, Powell-Hamilton N, Tusi J, Stevenson DA, Farrelly E, Hudgins L, Yang Y, Xia F, Wang X, Liu P, Walkiewicz M, McGuire M, Grange DK, Andrews MV, Hummel M, Madan-Khetarpal S, Infante E, Coban-Akdemir Z, Miszalski-Jamka K, Jefferies JL, Rosenfeld JA, Emrick L, Nugent KM, Lupski JR, Belmont JW, Lee B, Lalani SR", "reference": { "type": "PubMed", "id": "28807008", "url": "https://pubmed.ncbi.nlm.nih.gov/28807008" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q14004-1", "protein_name": "Cyclin-dependent kinase 13", "gene_name": "CDK13", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q14004", "url": "https://www.uniprot.org/uniprotkb/Q14004" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.28807008", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "CDK12/13 promote splicing of proximal introns by enhancing the interaction between RNA polymerase II and the splicing factor SF3B1.", "journal": "Nucleic acids research", "date": "2023-04-07", "authors": "Panzeri Valentina, Pieraccioli Marco, Cesari Eleonora, de la Grange Pierre, Sette Claudio", "reference": { "type": "PubMed", "id": "37026485", "url": "https://pubmed.ncbi.nlm.nih.gov/37026485" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q14004-1", "protein_name": "Cyclin-dependent kinase 13", "gene_name": "CDK13", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q14004", "url": "https://www.uniprot.org/uniprotkb/Q14004" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.37026485", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Cloning and characterization of a novel human prefoldin and SPEC domain protein gene (PFD6L) from the fetal brain.", "journal": "Biochem. Genet.", "date": "2006", "authors": "Zhang J, Liu L, Zhang X, Jin F, Chen J, Ji C, Gu S, Xie Y, Mao Y", "reference": { "type": "PubMed", "id": "16710767", "url": "https://pubmed.ncbi.nlm.nih.gov/16710767" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q5VVM6-1", "protein_name": "Coiled-coil domain-containing protein 30", "gene_name": "CCDC30", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q5VVM6", "url": "https://www.uniprot.org/uniprotkb/Q5VVM6" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.16710767", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Identification, expression analysis and polymorphism of a novel RLTPR gene encoding a RGD motif, tropomodulin domain and proline/leucine-rich regions.", "journal": "Gene", "date": "2004", "authors": "Matsuzaka Yasunari, Okamoto Koichi, Mabuchi Tomotaka, Iizuka Mariko, Ozawa Akira, Oka Akira, Tamiya Gen, Kulski Jerzy K, Inoko Hidetoshi", "reference": { "type": "PubMed", "id": "15588584", "url": "https://pubmed.ncbi.nlm.nih.gov/15588584" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q6F5E8-1", "protein_name": "Capping protein, Arp2/3 and myosin-I linker protein 2", "gene_name": "CARMIL2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q6F5E8", "url": "https://www.uniprot.org/uniprotkb/Q6F5E8" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.15588584", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "CARMIL2 is a novel molecular connection between vimentin and actin essential for cell migration and invadopodia formation.", "journal": "Molecular biology of the cell", "date": "2015", "authors": "Lanier MH, Kim T, Cooper JA", "reference": { "type": "PubMed", "id": "26466680", "url": "https://pubmed.ncbi.nlm.nih.gov/26466680" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q6F5E8-1", "protein_name": "Capping protein, Arp2/3 and myosin-I linker protein 2", "gene_name": "CARMIL2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q6F5E8", "url": "https://www.uniprot.org/uniprotkb/Q6F5E8" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 1021, "end_pos": 1021, "sequence_org": "R", "sequence_mut": "A", "comment": "Loss of ability to bind heterodimeric capping protein (CP), unable to inhibit the actin-capping activity of CP and to rescue the loss of lamellipodial ruffling, macropinocytosis, cell polarity, and invadopodia-mediated matrix degradation; when associated with A-1023.", "evidence": [ { "database": "UniProtKB", "id": "Q6F5E8", "url": "https://www.uniprot.org/uniprotkb/Q6F5E8" }, { "database": "PubMed", "id": "26466680", "url": "https://pubmed.ncbi.nlm.nih.gov/26466680" } ], "uniprot_canonical_ac": "Q6F5E8-1" }, { "start_pos": 1023, "end_pos": 1023, "sequence_org": "R", "sequence_mut": "A", "comment": "Loss of ability to bind heterodimeric capping protein (CP), unable to inhibit the actin-capping activity of CP and to rescue the loss of lamellipodial ruffling, macropinocytosis, cell polarity, and invadopodia-mediated matrix degradation; when associated with A-1021.", "evidence": [ { "database": "UniProtKB", "id": "Q6F5E8", "url": "https://www.uniprot.org/uniprotkb/Q6F5E8" }, { "database": "PubMed", "id": "26466680", "url": "https://pubmed.ncbi.nlm.nih.gov/26466680" } ], "uniprot_canonical_ac": "Q6F5E8-1" } ], "record_id": "pubmed.26466680", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Dual T cell- and B cell-intrinsic deficiency in humans with biallelic RLTPR mutations.", "journal": "The Journal of experimental medicine", "date": "2016", "authors": "Wang Y, Ma CS, Ling Y, Bousfiha A, Camcioglu Y, Jacquot S, Payne K, Crestani E, Roncagalli R, Belkadi A, Kerner G, Lorenzo L, Deswarte C, Chrabieh M, Patin E, Vincent QB, Muller-Fleckenstein I, Fleckenstein B, Ailal F, Quintana-Murci L, Fraitag S, Alyanakian MA, Leruez-Ville M, Picard C, Puel A, Bustamante J, Boisson-Dupuis S, Malissen M, Malissen B, Abel L, Hovnanian A, Notarangelo LD, Jouanguy E, Tangye SG, Beziat V, Casanova JL", "reference": { "type": "PubMed", "id": "27647349", "url": "https://pubmed.ncbi.nlm.nih.gov/27647349" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q6F5E8-1", "protein_name": "Capping protein, Arp2/3 and myosin-I linker protein 2", "gene_name": "CARMIL2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q6F5E8", "url": "https://www.uniprot.org/uniprotkb/Q6F5E8" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.27647349", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A potential founder variant in CARMIL2/RLTPR in three Norwegian families with warts, molluscum contagiosum, and T-cell dysfunction.", "journal": "Molecular genetics & genomic medicine", "date": "2016", "authors": "Sorte HS, Osnes LT, Fevang B, Aukrust P, Erichsen HC, Backe PH, Abrahamsen TG, Kittang OB, Overland T, Jhangiani SN, Muzny DM, Vigeland MD, Samarakoon P, Gambin T, Akdemir ZH, Gibbs RA, Rodningen OK, Lyle R, Lupski JR, Stray-Pedersen A", "reference": { "type": "PubMed", "id": "27896283", "url": "https://pubmed.ncbi.nlm.nih.gov/27896283" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q6F5E8-1", "protein_name": "Capping protein, Arp2/3 and myosin-I linker protein 2", "gene_name": "CARMIL2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q6F5E8", "url": "https://www.uniprot.org/uniprotkb/Q6F5E8" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.27896283", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A human immunodeficiency syndrome caused by mutations in CARMIL2.", "journal": "Nature communications", "date": "2017", "authors": "Schober T, Magg T, Laschinger M, Rohlfs M, Linhares ND, Puchalka J, Weisser T, Fehlner K, Mautner J, Walz C, Hussein K, Jaeger G, Kammer B, Schmid I, Bahia M, Pena SD, Behrends U, Belohradsky BH, Klein C, Hauck F", "reference": { "type": "PubMed", "id": "28112205", "url": "https://pubmed.ncbi.nlm.nih.gov/28112205" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q6F5E8-1", "protein_name": "Capping protein, Arp2/3 and myosin-I linker protein 2", "gene_name": "CARMIL2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q6F5E8", "url": "https://www.uniprot.org/uniprotkb/Q6F5E8" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.28112205", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Exogenous interleukin-2 can rescue in-vitro T cell activation and proliferation in patients with a novel capping protein regulator and myosin 1 linker 2 mutation.", "journal": "Clinical and experimental immunology", "date": "2020", "authors": "Shamriz O, Simon AJ, Lev A, Megged O, Ledder O, Picard E, Joseph L, Molho-Pessach V, Tal Y, Millman P, Slae M, Somech R, Toker O, Berger M", "reference": { "type": "PubMed", "id": "32201938", "url": "https://pubmed.ncbi.nlm.nih.gov/32201938" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q6F5E8-1", "protein_name": "Capping protein, Arp2/3 and myosin-I linker protein 2", "gene_name": "CARMIL2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q6F5E8", "url": "https://www.uniprot.org/uniprotkb/Q6F5E8" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.32201938", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A Novel Pathogenic Variant in CARMIL2 (RLTPR) Causing CARMIL2 Deficiency and EBV-Associated Smooth Muscle Tumors.", "journal": "Frontiers in immunology", "date": "2020", "authors": "Yonkof JR, Gupta A, Rueda CM, Mangray S, Prince BT, Rangarajan HG, Alshahrani M, Varga E, Cripe TP, Abraham RS", "reference": { "type": "PubMed", "id": "32625199", "url": "https://pubmed.ncbi.nlm.nih.gov/32625199" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q6F5E8-1", "protein_name": "Capping protein, Arp2/3 and myosin-I linker protein 2", "gene_name": "CARMIL2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q6F5E8", "url": "https://www.uniprot.org/uniprotkb/Q6F5E8" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.32625199", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "RLTPR Q575E: A novel recurrent gain-of-function mutation in patients with adult T-cell leukemia/lymphoma.", "journal": "European journal of haematology", "date": "2021", "authors": "Uchida Y, Yoshimitsu M, Hachiman M, Kusano S, Arima N, Shima K, Hayashida M, Kamada Y, Nakamura D, Arai A, Tanaka Y, Hara H, Ishitsuka K", "reference": { "type": "PubMed", "id": "33098696", "url": "https://pubmed.ncbi.nlm.nih.gov/33098696" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q6F5E8-1", "protein_name": "Capping protein, Arp2/3 and myosin-I linker protein 2", "gene_name": "CARMIL2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q6F5E8", "url": "https://www.uniprot.org/uniprotkb/Q6F5E8" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.33098696", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Novel CARMIL2 loss-of-function variants are associated with pediatric inflammatory bowel disease.", "journal": "Scientific reports", "date": "2021", "authors": "Bosa L, Batura V, Colavito D, Fiedler K, Gaio P, Guo C, Li Q, Marzollo A, Mescoli C, Nambu R, Pan J, Perilongo G, Warner N, Zhang S, Kotlarz D, Klein C, Snapper SB, Walters TD, Leon A, Griffiths AM, Cananzi M, Muise AM", "reference": { "type": "PubMed", "id": "33723309", "url": "https://pubmed.ncbi.nlm.nih.gov/33723309" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q6F5E8-1", "protein_name": "Capping protein, Arp2/3 and myosin-I linker protein 2", "gene_name": "CARMIL2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q6F5E8", "url": "https://www.uniprot.org/uniprotkb/Q6F5E8" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.33723309", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Human CARMIL2 deficiency underlies a broader immunological and clinical phenotype than CD28 deficiency.", "journal": "The Journal of experimental medicine", "date": "2023-02-06", "authors": "L\u00e9vy Romain, Gothe Florian, Momenilandi Mana, Magg Thomas, Materna Marie, Peters Philipp, Raedler Johannes, Philippot Quentin, Rack-Hoch Anita Lena, Langlais David, Bourgey Mathieu, Lanz Anna-Lisa, Ogishi Masato, Rosain J\u00e9r\u00e9mie, Martin Emmanuel, Latour Sylvain, Vladikine Natasha, Distefano Marco, Khan Taushif, Rapaport Franck, Schulz Marian S, Holzer Ursula, Fasth Anders, Sogkas Georgios, Speckmann Carsten, Troilo Arianna, Bigley Venetia, Roppelt Anna, Dinur-Schejter Yael, Toker Ori, Bronken Martinsen Karen Helene, Sherkat Roya, Somekh Ido, Somech Raz, Shouval Dror S, K\u00fchl J\u00f6rn-Sven, Ip Winnie, McDermott Elizabeth M, Cliffe Lucy, Ozen Ahmet, Baris Safa, Rangarajan Hemalatha G, Jouanguy Emmanuelle, Puel Anne, Bustamante Jacinta, Alyanakian Marie-Alexandra, Fusaro Mathieu, Wang Yi, Kong Xiao-Fei, Cobat Aur\u00e9lie, Boutboul David, Castelle Martin, Aguilar Claire, Hermine Olivier, Cheminant Morgane, Suarez Felipe, Yildiran Alisan, Bousfiha Aziz, Al-Mousa Hamoud, Alsohime Fahad, Cagdas Deniz, Abraham Roshini S, Knutsen Alan P, Fevang Borre, Bhattad Sagar, Kiykim Ayca, Erman Baran, Arikoglu Tugba, Unal Ekrem, Kumar Ashish, Geier Christoph B, Baumann Ulrich, Neven B\u00e9n\u00e9dicte, , Rohlfs Meino, Walz Christoph, Abel Laurent, Malissen Bernard, Marr Nico, Klein Christoph, Casanova Jean-Laurent, Hauck Fabian, B\u00e9ziat Vivien", "reference": { "type": "PubMed", "id": "36515678", "url": "https://pubmed.ncbi.nlm.nih.gov/36515678" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q6F5E8-1", "protein_name": "Capping protein, Arp2/3 and myosin-I linker protein 2", "gene_name": "CARMIL2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q6F5E8", "url": "https://www.uniprot.org/uniprotkb/Q6F5E8" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.36515678", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "ACTN2 (rs6656267) and MPPED2 (rs11031093 and rs536007) polymorphisms in primary dentition caries: A case-control study.", "journal": "International journal of paediatric dentistry", "date": "2020", "authors": "Katifelis H, Sioziou A, Gazouli M, Emmanouil D", "reference": { "type": "PubMed", "id": "32040219", "url": "https://pubmed.ncbi.nlm.nih.gov/32040219" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q15777-1", "protein_name": "Metallophosphoesterase MPPED2", "gene_name": "MPPED2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q15777", "url": "https://www.uniprot.org/uniprotkb/Q15777" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.32040219", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "MPPED2 is downregulated in glioblastoma, and its restoration inhibits proliferation and increases the sensitivity to temozolomide of glioblastoma cells.", "journal": "Cell cycle (Georgetown, Tex.)", "date": "2021", "authors": "Pellecchia S, De Martino M, Esposito F, Quintavalle C, Fusco A, Pallante P", "reference": { "type": "PubMed", "id": "33734003", "url": "https://pubmed.ncbi.nlm.nih.gov/33734003" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q15777-1", "protein_name": "Metallophosphoesterase MPPED2", "gene_name": "MPPED2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q15777", "url": "https://www.uniprot.org/uniprotkb/Q15777" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.33734003", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Association of MPPED2 gene variant rs10767873 with kidney function and risk of cardiovascular disease in patients with hypertension.", "journal": "Journal of human genetics", "date": "2023-02-16", "authors": "Zhong Yixuan, Wu Yiyi, Yang Yunyun, Chen Yu, Hui Rutai, Zhang Mei, Zhang Weili", "reference": { "type": "PubMed", "id": "36797372", "url": "https://pubmed.ncbi.nlm.nih.gov/36797372" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q15777-1", "protein_name": "Metallophosphoesterase MPPED2", "gene_name": "MPPED2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q15777", "url": "https://www.uniprot.org/uniprotkb/Q15777" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.36797372", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A WAGR region gene between PAX-6 and FSHB expressed in fetal brain.", "journal": "Hum. Genet.", "date": "1994", "authors": "Schwartz F, Neve R, Eisenman R, Gessler M, Bruns G", "reference": { "type": "PubMed", "id": "7527372", "url": "https://pubmed.ncbi.nlm.nih.gov/7527372" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q15777-1", "protein_name": "Metallophosphoesterase MPPED2", "gene_name": "MPPED2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q15777", "url": "https://www.uniprot.org/uniprotkb/Q15777" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.7527372", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "cDNA sequence, genomic organization, and evolutionary conservation of a novel gene from the WAGR region.", "journal": "Genomics", "date": "1995", "authors": "Schwartz F, Eisenman R, Knoll J, Gessler M, Bruns G", "reference": { "type": "PubMed", "id": "8666403", "url": "https://pubmed.ncbi.nlm.nih.gov/8666403" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q15777-1", "protein_name": "Metallophosphoesterase MPPED2", "gene_name": "MPPED2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q15777", "url": "https://www.uniprot.org/uniprotkb/Q15777" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.8666403", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Tyrosine 319, a newly identified phosphorylation site of ZAP-70, plays a critical role in T cell antigen receptor signaling.", "journal": "The Journal of biological chemistry", "date": "1999", "authors": "Di Bartolo V, Mege D, Germain V, Pelosi M, Dufour E, Michel F, Magistrelli G, Isacchi A, Acuto O", "reference": { "type": "PubMed", "id": "10037717", "url": "https://pubmed.ncbi.nlm.nih.gov/10037717" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P43403-1", "protein_name": "Tyrosine-protein kinase ZAP-70", "gene_name": "ZAP70", "tax_name": "Human" }, { "uniprot_canonical_ac": "P43404-1", "protein_name": "Tyrosine-protein kinase ZAP-70", "gene_name": "Zap70", "tax_name": "Mouse" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P43403", "url": "https://www.uniprot.org/uniprotkb/P43403" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 315, "end_pos": 315, "sequence_org": "Y", "sequence_mut": "A", "comment": "Increased constitutive kinase activity; when associated with F-319.", "evidence": [ { "database": "UniProtKB", "id": "P43403", "url": "https://www.uniprot.org/uniprotkb/P43403" }, { "database": "PubMed", "id": "17512407", "url": "https://pubmed.ncbi.nlm.nih.gov/17512407" }, { "database": "PubMed", "id": "10037717", "url": "https://pubmed.ncbi.nlm.nih.gov/10037717" }, { "database": "PubMed", "id": "9151714", "url": "https://pubmed.ncbi.nlm.nih.gov/9151714" }, { "database": "PubMed", "id": "11828374", "url": "https://pubmed.ncbi.nlm.nih.gov/11828374" } ], "uniprot_canonical_ac": "P43403-1" }, { "start_pos": 315, "end_pos": 315, "sequence_org": "Y", "sequence_mut": "F", "comment": "Increased constitutive kinase activity; when associated with F-319. About 75% loss of CD247/CD3Z-binding in stimulated TCR and complete loss of VAV1 interaction.", "evidence": [ { "database": "UniProtKB", "id": "P43403", "url": "https://www.uniprot.org/uniprotkb/P43403" }, { "database": "PubMed", "id": "17512407", "url": "https://pubmed.ncbi.nlm.nih.gov/17512407" }, { "database": "PubMed", "id": "10037717", "url": "https://pubmed.ncbi.nlm.nih.gov/10037717" }, { "database": "PubMed", "id": "9151714", "url": "https://pubmed.ncbi.nlm.nih.gov/9151714" }, { "database": "PubMed", "id": "11828374", "url": "https://pubmed.ncbi.nlm.nih.gov/11828374" } ], "uniprot_canonical_ac": "P43403-1" }, { "start_pos": 319, "end_pos": 319, "sequence_org": "Y", "sequence_mut": "A", "comment": "Increased constitutive kinase activity; when associated with F-315.", "evidence": [ { "database": "UniProtKB", "id": "P43403", "url": "https://www.uniprot.org/uniprotkb/P43403" }, { "database": "PubMed", "id": "17512407", "url": "https://pubmed.ncbi.nlm.nih.gov/17512407" }, { "database": "PubMed", "id": "10037717", "url": "https://pubmed.ncbi.nlm.nih.gov/10037717" } ], "uniprot_canonical_ac": "P43403-1" }, { "start_pos": 319, "end_pos": 319, "sequence_org": "Y", "sequence_mut": "F", "comment": "Increased constitutive kinase activity; when associated with F-315. About 80% loss of TCR-induced NFAT activation.", "evidence": [ { "database": "UniProtKB", "id": "P43403", "url": "https://www.uniprot.org/uniprotkb/P43403" }, { "database": "PubMed", "id": "17512407", "url": "https://pubmed.ncbi.nlm.nih.gov/17512407" }, { "database": "PubMed", "id": "10037717", "url": "https://pubmed.ncbi.nlm.nih.gov/10037717" } ], "uniprot_canonical_ac": "P43403-1" } ], "phosphorylation": [ { "start_pos": 126, "end_pos": 126, "kinase_uniprot_canonical_ac": "P43403-1", "kinase_gene_name": "ZAP70", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P43403", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43403" }, { "database": "PubMed", "id": "7961936", "url": "https://pubmed.ncbi.nlm.nih.gov/7961936" }, { "database": "PubMed", "id": "10037717", "url": "https://pubmed.ncbi.nlm.nih.gov/10037717" }, { "database": "PubMed", "id": "8756661", "url": "https://pubmed.ncbi.nlm.nih.gov/8756661" } ], "site_lbl": "Tyr126", "uniprot_canonical_ac": "P43403-1" }, { "start_pos": 292, "end_pos": 292, "kinase_uniprot_canonical_ac": "P43403-1", "kinase_gene_name": "ZAP70", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P43403", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43403" }, { "database": "PubMed", "id": "15144186", "url": "https://pubmed.ncbi.nlm.nih.gov/15144186" }, { "database": "PubMed", "id": "19901323", "url": "https://pubmed.ncbi.nlm.nih.gov/19901323" }, { "database": "PubMed", "id": "7961936", "url": "https://pubmed.ncbi.nlm.nih.gov/7961936" }, { "database": "PubMed", "id": "10037717", "url": "https://pubmed.ncbi.nlm.nih.gov/10037717" }, { "database": "PubMed", "id": "8756661", "url": "https://pubmed.ncbi.nlm.nih.gov/8756661" } ], "site_lbl": "Tyr292", "uniprot_canonical_ac": "P43403-1" }, { "start_pos": 315, "end_pos": 315, "kinase_uniprot_canonical_ac": "P43403-1", "kinase_gene_name": "ZAP70", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P43403", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43403" }, { "database": "PubMed", "id": "10037717", "url": "https://pubmed.ncbi.nlm.nih.gov/10037717" }, { "database": "PubMed", "id": "8756661", "url": "https://pubmed.ncbi.nlm.nih.gov/8756661" }, { "database": "PubMed", "id": "11828374", "url": "https://pubmed.ncbi.nlm.nih.gov/11828374" } ], "site_lbl": "Tyr315", "uniprot_canonical_ac": "P43403-1" }, { "start_pos": 315, "end_pos": 315, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine; by LCK", "evidence": [ { "database": "UniProtKB", "id": "P43403", "url": "https://www.uniprot.org/uniprotkb/P43403" }, { "database": "IntAct", "id": "P43403", "url": "https://www.ebi.ac.uk/intact/interactors/id:P43403*" }, { "database": "iPTMnet", "id": "P43403", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43403" }, { "database": "PubMed", "id": "16339550", "url": "https://pubmed.ncbi.nlm.nih.gov/16339550" }, { "database": "PubMed", "id": "9151714", "url": "https://pubmed.ncbi.nlm.nih.gov/9151714" }, { "database": "PRO", "id": "P43403", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=P43403" }, { "database": "PubMed", "id": "10037717", "url": "https://pubmed.ncbi.nlm.nih.gov/10037717" }, { "database": "PubMed", "id": "11514606", "url": "https://pubmed.ncbi.nlm.nih.gov/11514606" }, { "database": "PubMed", "id": "18779373", "url": "https://pubmed.ncbi.nlm.nih.gov/18779373" }, { "database": "PubMed", "id": "21103055", "url": "https://pubmed.ncbi.nlm.nih.gov/21103055" }, { "database": "PubMed", "id": "30356330", "url": "https://pubmed.ncbi.nlm.nih.gov/30356330" }, { "database": "PubMed", "id": "30692994", "url": "https://pubmed.ncbi.nlm.nih.gov/30692994" }, { "database": "PubMed", "id": "32974219", "url": "https://pubmed.ncbi.nlm.nih.gov/32974219" } ], "site_lbl": "Tyr315", "uniprot_canonical_ac": "P43403-1" }, { "start_pos": 319, "end_pos": 319, "kinase_uniprot_canonical_ac": "P43403-1", "kinase_gene_name": "ZAP70", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P43403", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43403" }, { "database": "PubMed", "id": "7961936", "url": "https://pubmed.ncbi.nlm.nih.gov/7961936" }, { "database": "PubMed", "id": "10037717", "url": "https://pubmed.ncbi.nlm.nih.gov/10037717" }, { "database": "PubMed", "id": "8756661", "url": "https://pubmed.ncbi.nlm.nih.gov/8756661" } ], "site_lbl": "Tyr319", "uniprot_canonical_ac": "P43403-1" }, { "start_pos": 319, "end_pos": 319, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "P43403", "url": "https://www.uniprot.org/uniprotkb/P43403" }, { "database": "PubMed", "id": "10037717", "url": "https://pubmed.ncbi.nlm.nih.gov/10037717" }, { "database": "IntAct", "id": "P43403", "url": "https://www.ebi.ac.uk/intact/interactors/id:P43403*" }, { "database": "iPTMnet", "id": "P43403", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43403" }, { "database": "PubMed", "id": "10318843", "url": "https://pubmed.ncbi.nlm.nih.gov/10318843" }, { "database": "PubMed", "id": "24256567", "url": "https://pubmed.ncbi.nlm.nih.gov/24256567" }, { "database": "PubMed", "id": "10202147", "url": "https://pubmed.ncbi.nlm.nih.gov/10202147" }, { "database": "PubMed", "id": "11514606", "url": "https://pubmed.ncbi.nlm.nih.gov/11514606" }, { "database": "PubMed", "id": "11970985", "url": "https://pubmed.ncbi.nlm.nih.gov/11970985" }, { "database": "PubMed", "id": "15337788", "url": "https://pubmed.ncbi.nlm.nih.gov/15337788" }, { "database": "PubMed", "id": "15996927", "url": "https://pubmed.ncbi.nlm.nih.gov/15996927" }, { "database": "PubMed", "id": "17250586", "url": "https://pubmed.ncbi.nlm.nih.gov/17250586" }, { "database": "PubMed", "id": "17942891", "url": "https://pubmed.ncbi.nlm.nih.gov/17942891" }, { "database": "PubMed", "id": "17960665", "url": "https://pubmed.ncbi.nlm.nih.gov/17960665" }, { "database": "PubMed", "id": "18378687", "url": "https://pubmed.ncbi.nlm.nih.gov/18378687" }, { "database": "PubMed", "id": "20682913", "url": "https://pubmed.ncbi.nlm.nih.gov/20682913" }, { "database": "PubMed", "id": "21103055", "url": "https://pubmed.ncbi.nlm.nih.gov/21103055" }, { "database": "PubMed", "id": "22665519", "url": "https://pubmed.ncbi.nlm.nih.gov/22665519" }, { "database": "PubMed", "id": "23758320", "url": "https://pubmed.ncbi.nlm.nih.gov/23758320" }, { "database": "PubMed", "id": "26783323", "url": "https://pubmed.ncbi.nlm.nih.gov/26783323" }, { "database": "PubMed", "id": "27210755", "url": "https://pubmed.ncbi.nlm.nih.gov/27210755" }, { "database": "PubMed", "id": "29456532", "url": "https://pubmed.ncbi.nlm.nih.gov/29456532" }, { "database": "PubMed", "id": "29915297", "url": "https://pubmed.ncbi.nlm.nih.gov/29915297" }, { "database": "PubMed", "id": "30356330", "url": "https://pubmed.ncbi.nlm.nih.gov/30356330" }, { "database": "PubMed", "id": "32974219", "url": "https://pubmed.ncbi.nlm.nih.gov/32974219" }, { "database": "PubMed", "id": "33225946", "url": "https://pubmed.ncbi.nlm.nih.gov/33225946" }, { "database": "PubMed", "id": "33482200", "url": "https://pubmed.ncbi.nlm.nih.gov/33482200" }, { "database": "PubMed", "id": "33917227", "url": "https://pubmed.ncbi.nlm.nih.gov/33917227" }, { "database": "PubMed", "id": "36078131", "url": "https://pubmed.ncbi.nlm.nih.gov/36078131" } ], "site_lbl": "Tyr319", "uniprot_canonical_ac": "P43403-1" }, { "start_pos": 318, "end_pos": 318, "kinase_uniprot_canonical_ac": "P06240-1", "kinase_gene_name": "Lck", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P43404", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43404" }, { "database": "PubMed", "id": "10037717", "url": "https://pubmed.ncbi.nlm.nih.gov/10037717" } ], "site_lbl": "Tyr318", "uniprot_canonical_ac": "P43404-1" } ], "record_id": "pubmed.10037717", "abstract": "", "glycosylation": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 7 }, { "field": "total_sites", "count": 5 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Structure of the amino-terminal domain of Cbl complexed to its binding site on ZAP-70 kinase.", "journal": "Nature", "date": "1999", "authors": "Meng W, Sawasdikosol S, Burakoff SJ, Eck MJ", "reference": { "type": "PubMed", "id": "10078535", "url": "https://pubmed.ncbi.nlm.nih.gov/10078535" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P43403-1", "protein_name": "Tyrosine-protein kinase ZAP-70", "gene_name": "ZAP70", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22681-1", "protein_name": "E3 ubiquitin-protein ligase CBL", "gene_name": "CBL", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P43403", "url": "https://www.uniprot.org/uniprotkb/P43403" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 229, "end_pos": 229, "sequence_org": "D", "sequence_mut": "Q", "comment": "Abolishes interaction with ZAP70.", "evidence": [ { "database": "UniProtKB", "id": "P22681", "url": "https://www.uniprot.org/uniprotkb/P22681" }, { "database": "PubMed", "id": "10078535", "url": "https://pubmed.ncbi.nlm.nih.gov/10078535" } ], "uniprot_canonical_ac": "P22681-1" }, { "start_pos": 240, "end_pos": 240, "sequence_org": "E", "sequence_mut": "S", "comment": "Abolishes interaction with ZAP70.", "evidence": [ { "database": "UniProtKB", "id": "P22681", "url": "https://www.uniprot.org/uniprotkb/P22681" }, { "database": "PubMed", "id": "10078535", "url": "https://pubmed.ncbi.nlm.nih.gov/10078535" } ], "uniprot_canonical_ac": "P22681-1" }, { "start_pos": 294, "end_pos": 294, "sequence_org": "R", "sequence_mut": "K", "comment": "Abolishes interaction with ZAP70.", "evidence": [ { "database": "UniProtKB", "id": "P22681", "url": "https://www.uniprot.org/uniprotkb/P22681" }, { "database": "PubMed", "id": "10078535", "url": "https://pubmed.ncbi.nlm.nih.gov/10078535" } ], "uniprot_canonical_ac": "P22681-1" }, { "start_pos": 306, "end_pos": 306, "sequence_org": "G", "sequence_mut": "E", "comment": "Abolishes interaction with ZAP70 and EPHB1, but does not affect interaction with SLA. Reduces ubiquitination and therefore proteasomal degradation of SPRED2.", "evidence": [ { "database": "UniProtKB", "id": "P22681", "url": "https://www.uniprot.org/uniprotkb/P22681" }, { "database": "PubMed", "id": "10078535", "url": "https://pubmed.ncbi.nlm.nih.gov/10078535" }, { "database": "PubMed", "id": "10449770", "url": "https://pubmed.ncbi.nlm.nih.gov/10449770" }, { "database": "PubMed", "id": "17094949", "url": "https://pubmed.ncbi.nlm.nih.gov/17094949" } ], "uniprot_canonical_ac": "P22681-1" }, { "start_pos": 80, "end_pos": 80, "sequence_org": "S", "sequence_mut": "D", "comment": "Abolishes interaction with ZAP70.", "evidence": [ { "database": "UniProtKB", "id": "P22681", "url": "https://www.uniprot.org/uniprotkb/P22681" }, { "database": "PubMed", "id": "10078535", "url": "https://pubmed.ncbi.nlm.nih.gov/10078535" } ], "uniprot_canonical_ac": "P22681-1" }, { "start_pos": 82, "end_pos": 82, "sequence_org": "P", "sequence_mut": "A", "comment": "Abolishes interaction with ZAP70.", "evidence": [ { "database": "UniProtKB", "id": "P22681", "url": "https://www.uniprot.org/uniprotkb/P22681" }, { "database": "PubMed", "id": "10078535", "url": "https://pubmed.ncbi.nlm.nih.gov/10078535" } ], "uniprot_canonical_ac": "P22681-1" } ], "record_id": "pubmed.10078535", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Phosphorylation of Tyr319 in ZAP-70 is required for T-cell antigen receptor-dependent phospholipase C-gamma1 and Ras activation.", "journal": "The EMBO journal", "date": "1999", "authors": "Williams BL, Irvin BJ, Sutor SL, Chini CC, Yacyshyn E, Bubeck Wardenburg J, Dalton M, Chan AC, Abraham RT", "reference": { "type": "PubMed", "id": "10202147", "url": "https://pubmed.ncbi.nlm.nih.gov/10202147" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P43403-1", "protein_name": "Tyrosine-protein kinase ZAP-70", "gene_name": "ZAP70", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P43403", "url": "https://www.uniprot.org/uniprotkb/P43403" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 319, "end_pos": 319, "kinase_uniprot_canonical_ac": "P06239-1", "kinase_gene_name": "LCK", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P43403", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43403" }, { "database": "PubMed", "id": "10318843", "url": "https://pubmed.ncbi.nlm.nih.gov/10318843" }, { "database": "PubMed", "id": "10202147", "url": "https://pubmed.ncbi.nlm.nih.gov/10202147" } ], "site_lbl": "Tyr319", "uniprot_canonical_ac": "P43403-1" }, { "start_pos": 319, "end_pos": 319, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "P43403", "url": "https://www.uniprot.org/uniprotkb/P43403" }, { "database": "PubMed", "id": "10037717", "url": "https://pubmed.ncbi.nlm.nih.gov/10037717" }, { "database": "IntAct", "id": "P43403", "url": "https://www.ebi.ac.uk/intact/interactors/id:P43403*" }, { "database": "iPTMnet", "id": "P43403", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43403" }, { "database": "PubMed", "id": "10318843", "url": "https://pubmed.ncbi.nlm.nih.gov/10318843" }, { "database": "PubMed", "id": "24256567", "url": "https://pubmed.ncbi.nlm.nih.gov/24256567" }, { "database": "PubMed", "id": "10202147", "url": "https://pubmed.ncbi.nlm.nih.gov/10202147" }, { "database": "PubMed", "id": "11514606", "url": "https://pubmed.ncbi.nlm.nih.gov/11514606" }, { "database": "PubMed", "id": "11970985", "url": "https://pubmed.ncbi.nlm.nih.gov/11970985" }, { "database": "PubMed", "id": "15337788", "url": "https://pubmed.ncbi.nlm.nih.gov/15337788" }, { "database": "PubMed", "id": "15996927", "url": "https://pubmed.ncbi.nlm.nih.gov/15996927" }, { "database": "PubMed", "id": "17250586", "url": "https://pubmed.ncbi.nlm.nih.gov/17250586" }, { "database": "PubMed", "id": "17942891", "url": "https://pubmed.ncbi.nlm.nih.gov/17942891" }, { "database": "PubMed", "id": "17960665", "url": "https://pubmed.ncbi.nlm.nih.gov/17960665" }, { "database": "PubMed", "id": "18378687", "url": "https://pubmed.ncbi.nlm.nih.gov/18378687" }, { "database": "PubMed", "id": "20682913", "url": "https://pubmed.ncbi.nlm.nih.gov/20682913" }, { "database": "PubMed", "id": "21103055", "url": "https://pubmed.ncbi.nlm.nih.gov/21103055" }, { "database": "PubMed", "id": "22665519", "url": "https://pubmed.ncbi.nlm.nih.gov/22665519" }, { "database": "PubMed", "id": "23758320", "url": "https://pubmed.ncbi.nlm.nih.gov/23758320" }, { "database": "PubMed", "id": "26783323", "url": "https://pubmed.ncbi.nlm.nih.gov/26783323" }, { "database": "PubMed", "id": "27210755", "url": "https://pubmed.ncbi.nlm.nih.gov/27210755" }, { "database": "PubMed", "id": "29456532", "url": "https://pubmed.ncbi.nlm.nih.gov/29456532" }, { "database": "PubMed", "id": "29915297", "url": "https://pubmed.ncbi.nlm.nih.gov/29915297" }, { "database": "PubMed", "id": "30356330", "url": "https://pubmed.ncbi.nlm.nih.gov/30356330" }, { "database": "PubMed", "id": "32974219", "url": "https://pubmed.ncbi.nlm.nih.gov/32974219" }, { "database": "PubMed", "id": "33225946", "url": "https://pubmed.ncbi.nlm.nih.gov/33225946" }, { "database": "PubMed", "id": "33482200", "url": "https://pubmed.ncbi.nlm.nih.gov/33482200" }, { "database": "PubMed", "id": "33917227", "url": "https://pubmed.ncbi.nlm.nih.gov/33917227" }, { "database": "PubMed", "id": "36078131", "url": "https://pubmed.ncbi.nlm.nih.gov/36078131" } ], "site_lbl": "Tyr319", "uniprot_canonical_ac": "P43403-1" } ], "record_id": "pubmed.10202147", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Tyrosine 319 in the interdomain B of ZAP-70 is a binding site for the Src homology 2 domain of Lck.", "journal": "The Journal of biological chemistry", "date": "1999", "authors": "Pelosi M, Di Bartolo V, Mounier V, Mege D, Pascussi JM, Dufour E, Blondel A, Acuto O", "reference": { "type": "PubMed", "id": "10318843", "url": "https://pubmed.ncbi.nlm.nih.gov/10318843" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P43403-1", "protein_name": "Tyrosine-protein kinase ZAP-70", "gene_name": "ZAP70", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P43403", "url": "https://www.uniprot.org/uniprotkb/P43403" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 319, "end_pos": 319, "kinase_uniprot_canonical_ac": "P06239-1", "kinase_gene_name": "LCK", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P43403", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43403" }, { "database": "PubMed", "id": "10318843", "url": "https://pubmed.ncbi.nlm.nih.gov/10318843" }, { "database": "PubMed", "id": "10202147", "url": "https://pubmed.ncbi.nlm.nih.gov/10202147" } ], "site_lbl": "Tyr319", "uniprot_canonical_ac": "P43403-1" }, { "start_pos": 319, "end_pos": 319, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "P43403", "url": "https://www.uniprot.org/uniprotkb/P43403" }, { "database": "PubMed", "id": "10037717", "url": "https://pubmed.ncbi.nlm.nih.gov/10037717" }, { "database": "IntAct", "id": "P43403", "url": "https://www.ebi.ac.uk/intact/interactors/id:P43403*" }, { "database": "iPTMnet", "id": "P43403", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43403" }, { "database": "PubMed", "id": "10318843", "url": "https://pubmed.ncbi.nlm.nih.gov/10318843" }, { "database": "PubMed", "id": "24256567", "url": "https://pubmed.ncbi.nlm.nih.gov/24256567" }, { "database": "PubMed", "id": "10202147", "url": "https://pubmed.ncbi.nlm.nih.gov/10202147" }, { "database": "PubMed", "id": "11514606", "url": "https://pubmed.ncbi.nlm.nih.gov/11514606" }, { "database": "PubMed", "id": "11970985", "url": "https://pubmed.ncbi.nlm.nih.gov/11970985" }, { "database": "PubMed", "id": "15337788", "url": "https://pubmed.ncbi.nlm.nih.gov/15337788" }, { "database": "PubMed", "id": "15996927", "url": "https://pubmed.ncbi.nlm.nih.gov/15996927" }, { "database": "PubMed", "id": "17250586", "url": "https://pubmed.ncbi.nlm.nih.gov/17250586" }, { "database": "PubMed", "id": "17942891", "url": "https://pubmed.ncbi.nlm.nih.gov/17942891" }, { "database": "PubMed", "id": "17960665", "url": "https://pubmed.ncbi.nlm.nih.gov/17960665" }, { "database": "PubMed", "id": "18378687", "url": "https://pubmed.ncbi.nlm.nih.gov/18378687" }, { "database": "PubMed", "id": "20682913", "url": "https://pubmed.ncbi.nlm.nih.gov/20682913" }, { "database": "PubMed", "id": "21103055", "url": "https://pubmed.ncbi.nlm.nih.gov/21103055" }, { "database": "PubMed", "id": "22665519", "url": "https://pubmed.ncbi.nlm.nih.gov/22665519" }, { "database": "PubMed", "id": "23758320", "url": "https://pubmed.ncbi.nlm.nih.gov/23758320" }, { "database": "PubMed", "id": "26783323", "url": "https://pubmed.ncbi.nlm.nih.gov/26783323" }, { "database": "PubMed", "id": "27210755", "url": "https://pubmed.ncbi.nlm.nih.gov/27210755" }, { "database": "PubMed", "id": "29456532", "url": "https://pubmed.ncbi.nlm.nih.gov/29456532" }, { "database": "PubMed", "id": "29915297", "url": "https://pubmed.ncbi.nlm.nih.gov/29915297" }, { "database": "PubMed", "id": "30356330", "url": "https://pubmed.ncbi.nlm.nih.gov/30356330" }, { "database": "PubMed", "id": "32974219", "url": "https://pubmed.ncbi.nlm.nih.gov/32974219" }, { "database": "PubMed", "id": "33225946", "url": "https://pubmed.ncbi.nlm.nih.gov/33225946" }, { "database": "PubMed", "id": "33482200", "url": "https://pubmed.ncbi.nlm.nih.gov/33482200" }, { "database": "PubMed", "id": "33917227", "url": "https://pubmed.ncbi.nlm.nih.gov/33917227" }, { "database": "PubMed", "id": "36078131", "url": "https://pubmed.ncbi.nlm.nih.gov/36078131" } ], "site_lbl": "Tyr319", "uniprot_canonical_ac": "P43403-1" } ], "record_id": "pubmed.10318843", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The linker phosphorylation site Tyr292 mediates the negative regulatory effect of Cbl on ZAP-70 in T cells.", "journal": "Journal of immunology (Baltimore, Md. : 1950)", "date": "2000", "authors": "Rao N, Lupher ML Jr, Ota S, Reedquist KA, Druker BJ, Band H", "reference": { "type": "PubMed", "id": "10779765", "url": "https://pubmed.ncbi.nlm.nih.gov/10779765" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P43403-1", "protein_name": "Tyrosine-protein kinase ZAP-70", "gene_name": "ZAP70", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P43403", "url": "https://www.uniprot.org/uniprotkb/P43403" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 292, "end_pos": 292, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "P43403", "url": "https://www.uniprot.org/uniprotkb/P43403" }, { "database": "PubMed", "id": "19690332", "url": "https://pubmed.ncbi.nlm.nih.gov/19690332" }, { "database": "PubMed", "id": "8943331", "url": "https://pubmed.ncbi.nlm.nih.gov/8943331" }, { "database": "iPTMnet", "id": "P43403", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43403" }, { "database": "PubMed", "id": "10779765", "url": "https://pubmed.ncbi.nlm.nih.gov/10779765" }, { "database": "PubMed", "id": "18548611", "url": "https://pubmed.ncbi.nlm.nih.gov/18548611" }, { "database": "PubMed", "id": "23874979", "url": "https://pubmed.ncbi.nlm.nih.gov/23874979" }, { "database": "PubMed", "id": "25682964", "url": "https://pubmed.ncbi.nlm.nih.gov/25682964" }, { "database": "PubMed", "id": "7961936", "url": "https://pubmed.ncbi.nlm.nih.gov/7961936" }, { "database": "PubMed", "id": "9199177", "url": "https://pubmed.ncbi.nlm.nih.gov/9199177" }, { "database": "PubMed", "id": "9407100", "url": "https://pubmed.ncbi.nlm.nih.gov/9407100" } ], "site_lbl": "Tyr292", "uniprot_canonical_ac": "P43403-1" } ], "record_id": "pubmed.10779765", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Distinct T cell developmental consequences in humans and mice expressing identical mutations in the DLAARN motif of ZAP-70.", "journal": "Journal of immunology (Baltimore, Md. : 1950)", "date": "2001", "authors": "Elder ME, Skoda-Smith S, Kadlecek TA, Wang F, Wu J, Weiss A", "reference": { "type": "PubMed", "id": "11123350", "url": "https://pubmed.ncbi.nlm.nih.gov/11123350" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P43403-1", "protein_name": "Tyrosine-protein kinase ZAP-70", "gene_name": "ZAP70", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P43403", "url": "https://www.uniprot.org/uniprotkb/P43403" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.11123350", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Analysis of regulatory phosphorylation sites in ZAP-70 by capillary high-performance liquid chromatography coupled to electrospray ionization or matrix-assisted laser desorption ionization time-of-flight mass spectrometry.", "journal": "Journal of chromatography. B, Biomedical sciences and applications", "date": "2001", "authors": "Miliotis T, Ericsson PO, Marko-Varga G, Svensson R, Nilsson J, Laurell T, Bischoff R", "reference": { "type": "PubMed", "id": "11270871", "url": "https://pubmed.ncbi.nlm.nih.gov/11270871" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P43403-1", "protein_name": "Tyrosine-protein kinase ZAP-70", "gene_name": "ZAP70", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P43403", "url": "https://www.uniprot.org/uniprotkb/P43403" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 492, "end_pos": 492, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "P43403", "url": "https://www.uniprot.org/uniprotkb/P43403" }, { "database": "PubMed", "id": "7781602", "url": "https://pubmed.ncbi.nlm.nih.gov/7781602" }, { "database": "iPTMnet", "id": "P43403", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43403" }, { "database": "PubMed", "id": "11270871", "url": "https://pubmed.ncbi.nlm.nih.gov/11270871" }, { "database": "PubMed", "id": "23620790", "url": "https://pubmed.ncbi.nlm.nih.gov/23620790" }, { "database": "PubMed", "id": "23874979", "url": "https://pubmed.ncbi.nlm.nih.gov/23874979" }, { "database": "PubMed", "id": "7961936", "url": "https://pubmed.ncbi.nlm.nih.gov/7961936" }, { "database": "PubMed", "id": "9199177", "url": "https://pubmed.ncbi.nlm.nih.gov/9199177" } ], "site_lbl": "Tyr492", "uniprot_canonical_ac": "P43403-1" }, { "start_pos": 493, "end_pos": 493, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "P43403", "url": "https://www.uniprot.org/uniprotkb/P43403" }, { "database": "PubMed", "id": "7781602", "url": "https://pubmed.ncbi.nlm.nih.gov/7781602" }, { "database": "PRO", "id": "P43403", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=P43403" }, { "database": "iPTMnet", "id": "P43403", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43403" }, { "database": "PubMed", "id": "11270871", "url": "https://pubmed.ncbi.nlm.nih.gov/11270871" }, { "database": "PubMed", "id": "11514606", "url": "https://pubmed.ncbi.nlm.nih.gov/11514606" }, { "database": "PubMed", "id": "11976341", "url": "https://pubmed.ncbi.nlm.nih.gov/11976341" }, { "database": "PubMed", "id": "18548611", "url": "https://pubmed.ncbi.nlm.nih.gov/18548611" }, { "database": "PubMed", "id": "21103055", "url": "https://pubmed.ncbi.nlm.nih.gov/21103055" }, { "database": "PubMed", "id": "21757751", "url": "https://pubmed.ncbi.nlm.nih.gov/21757751" }, { "database": "PubMed", "id": "23758320", "url": "https://pubmed.ncbi.nlm.nih.gov/23758320" }, { "database": "PubMed", "id": "23874979", "url": "https://pubmed.ncbi.nlm.nih.gov/23874979" }, { "database": "PubMed", "id": "24493801", "url": "https://pubmed.ncbi.nlm.nih.gov/24493801" }, { "database": "PubMed", "id": "26783323", "url": "https://pubmed.ncbi.nlm.nih.gov/26783323" }, { "database": "PubMed", "id": "27253329", "url": "https://pubmed.ncbi.nlm.nih.gov/27253329" }, { "database": "PubMed", "id": "30356330", "url": "https://pubmed.ncbi.nlm.nih.gov/30356330" }, { "database": "PubMed", "id": "33482200", "url": "https://pubmed.ncbi.nlm.nih.gov/33482200" }, { "database": "PubMed", "id": "7961936", "url": "https://pubmed.ncbi.nlm.nih.gov/7961936" }, { "database": "PubMed", "id": "9199177", "url": "https://pubmed.ncbi.nlm.nih.gov/9199177" } ], "site_lbl": "Tyr493", "uniprot_canonical_ac": "P43403-1" } ], "record_id": "pubmed.11270871", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Cbl promotes ubiquitination of the T cell receptor zeta through an adaptor function of Zap-70.", "journal": "The Journal of biological chemistry", "date": "2001-07-13", "authors": "Wang H Y, Altman Y, Fang D, Elly C, Dai Y, Shao Y, Liu Y C", "reference": { "type": "PubMed", "id": "11353765", "url": "https://pubmed.ncbi.nlm.nih.gov/11353765" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P43403-1", "protein_name": "Tyrosine-protein kinase ZAP-70", "gene_name": "ZAP70", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P43403", "url": "https://www.uniprot.org/uniprotkb/P43403" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.11353765", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Specific immunoglobulin E responses in ZAP-70-deficient patients are mediated by Syk-dependent T-cell receptor signalling.", "journal": "Immunology", "date": "2001", "authors": "Toyabe S, Watanabe A, Harada W, Karasawa T, Uchiyama M", "reference": { "type": "PubMed", "id": "11412303", "url": "https://pubmed.ncbi.nlm.nih.gov/11412303" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P43403-1", "protein_name": "Tyrosine-protein kinase ZAP-70", "gene_name": "ZAP70", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P43403", "url": "https://www.uniprot.org/uniprotkb/P43403" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.11412303", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Requirement for tyrosine residues 315 and 319 within zeta chain-associated protein 70 for T cell development.", "journal": "The Journal of experimental medicine", "date": "2001", "authors": "Gong Q, Jin X, Akk AM, Foger N, White M, Gong G, Bubeck Wardenburg J, Chan AC", "reference": { "type": "PubMed", "id": "11514606", "url": "https://pubmed.ncbi.nlm.nih.gov/11514606" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P43403-1", "protein_name": "Tyrosine-protein kinase ZAP-70", "gene_name": "ZAP70", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P43403", "url": "https://www.uniprot.org/uniprotkb/P43403" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 315, "end_pos": 315, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine; by LCK", "evidence": [ { "database": "UniProtKB", "id": "P43403", "url": "https://www.uniprot.org/uniprotkb/P43403" }, { "database": "IntAct", "id": "P43403", "url": "https://www.ebi.ac.uk/intact/interactors/id:P43403*" }, { "database": "iPTMnet", "id": "P43403", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43403" }, { "database": "PubMed", "id": "16339550", "url": "https://pubmed.ncbi.nlm.nih.gov/16339550" }, { "database": "PubMed", "id": "9151714", "url": "https://pubmed.ncbi.nlm.nih.gov/9151714" }, { "database": "PRO", "id": "P43403", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=P43403" }, { "database": "PubMed", "id": "10037717", "url": "https://pubmed.ncbi.nlm.nih.gov/10037717" }, { "database": "PubMed", "id": "11514606", "url": "https://pubmed.ncbi.nlm.nih.gov/11514606" }, { "database": "PubMed", "id": "18779373", "url": "https://pubmed.ncbi.nlm.nih.gov/18779373" }, { "database": "PubMed", "id": "21103055", "url": "https://pubmed.ncbi.nlm.nih.gov/21103055" }, { "database": "PubMed", "id": "30356330", "url": "https://pubmed.ncbi.nlm.nih.gov/30356330" }, { "database": "PubMed", "id": "30692994", "url": "https://pubmed.ncbi.nlm.nih.gov/30692994" }, { "database": "PubMed", "id": "32974219", "url": "https://pubmed.ncbi.nlm.nih.gov/32974219" } ], "site_lbl": "Tyr315", "uniprot_canonical_ac": "P43403-1" }, { "start_pos": 319, "end_pos": 319, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "P43403", "url": "https://www.uniprot.org/uniprotkb/P43403" }, { "database": "PubMed", "id": "10037717", "url": "https://pubmed.ncbi.nlm.nih.gov/10037717" }, { "database": "IntAct", "id": "P43403", "url": "https://www.ebi.ac.uk/intact/interactors/id:P43403*" }, { "database": "iPTMnet", "id": "P43403", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43403" }, { "database": "PubMed", "id": "10318843", "url": "https://pubmed.ncbi.nlm.nih.gov/10318843" }, { "database": "PubMed", "id": "24256567", "url": "https://pubmed.ncbi.nlm.nih.gov/24256567" }, { "database": "PubMed", "id": "10202147", "url": "https://pubmed.ncbi.nlm.nih.gov/10202147" }, { "database": "PubMed", "id": "11514606", "url": "https://pubmed.ncbi.nlm.nih.gov/11514606" }, { "database": "PubMed", "id": "11970985", "url": "https://pubmed.ncbi.nlm.nih.gov/11970985" }, { "database": "PubMed", "id": "15337788", "url": "https://pubmed.ncbi.nlm.nih.gov/15337788" }, { "database": "PubMed", "id": "15996927", "url": "https://pubmed.ncbi.nlm.nih.gov/15996927" }, { "database": "PubMed", "id": "17250586", "url": "https://pubmed.ncbi.nlm.nih.gov/17250586" }, { "database": "PubMed", "id": "17942891", "url": "https://pubmed.ncbi.nlm.nih.gov/17942891" }, { "database": "PubMed", "id": "17960665", "url": "https://pubmed.ncbi.nlm.nih.gov/17960665" }, { "database": "PubMed", "id": "18378687", "url": "https://pubmed.ncbi.nlm.nih.gov/18378687" }, { "database": "PubMed", "id": "20682913", "url": "https://pubmed.ncbi.nlm.nih.gov/20682913" }, { "database": "PubMed", "id": "21103055", "url": "https://pubmed.ncbi.nlm.nih.gov/21103055" }, { "database": "PubMed", "id": "22665519", "url": "https://pubmed.ncbi.nlm.nih.gov/22665519" }, { "database": "PubMed", "id": "23758320", "url": "https://pubmed.ncbi.nlm.nih.gov/23758320" }, { "database": "PubMed", "id": "26783323", "url": "https://pubmed.ncbi.nlm.nih.gov/26783323" }, { "database": "PubMed", "id": "27210755", "url": "https://pubmed.ncbi.nlm.nih.gov/27210755" }, { "database": "PubMed", "id": "29456532", "url": "https://pubmed.ncbi.nlm.nih.gov/29456532" }, { "database": "PubMed", "id": "29915297", "url": "https://pubmed.ncbi.nlm.nih.gov/29915297" }, { "database": "PubMed", "id": "30356330", "url": "https://pubmed.ncbi.nlm.nih.gov/30356330" }, { "database": "PubMed", "id": "32974219", "url": "https://pubmed.ncbi.nlm.nih.gov/32974219" }, { "database": "PubMed", "id": "33225946", "url": "https://pubmed.ncbi.nlm.nih.gov/33225946" }, { "database": "PubMed", "id": "33482200", "url": "https://pubmed.ncbi.nlm.nih.gov/33482200" }, { "database": "PubMed", "id": "33917227", "url": "https://pubmed.ncbi.nlm.nih.gov/33917227" }, { "database": "PubMed", "id": "36078131", "url": "https://pubmed.ncbi.nlm.nih.gov/36078131" } ], "site_lbl": "Tyr319", "uniprot_canonical_ac": "P43403-1" }, { "start_pos": 493, "end_pos": 493, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "P43403", "url": "https://www.uniprot.org/uniprotkb/P43403" }, { "database": "PubMed", "id": "7781602", "url": "https://pubmed.ncbi.nlm.nih.gov/7781602" }, { "database": "PRO", "id": "P43403", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=P43403" }, { "database": "iPTMnet", "id": "P43403", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43403" }, { "database": "PubMed", "id": "11270871", "url": "https://pubmed.ncbi.nlm.nih.gov/11270871" }, { "database": "PubMed", "id": "11514606", "url": "https://pubmed.ncbi.nlm.nih.gov/11514606" }, { "database": "PubMed", "id": "11976341", "url": "https://pubmed.ncbi.nlm.nih.gov/11976341" }, { "database": "PubMed", "id": "18548611", "url": "https://pubmed.ncbi.nlm.nih.gov/18548611" }, { "database": "PubMed", "id": "21103055", "url": "https://pubmed.ncbi.nlm.nih.gov/21103055" }, { "database": "PubMed", "id": "21757751", "url": "https://pubmed.ncbi.nlm.nih.gov/21757751" }, { "database": "PubMed", "id": "23758320", "url": "https://pubmed.ncbi.nlm.nih.gov/23758320" }, { "database": "PubMed", "id": "23874979", "url": "https://pubmed.ncbi.nlm.nih.gov/23874979" }, { "database": "PubMed", "id": "24493801", "url": "https://pubmed.ncbi.nlm.nih.gov/24493801" }, { "database": "PubMed", "id": "26783323", "url": "https://pubmed.ncbi.nlm.nih.gov/26783323" }, { "database": "PubMed", "id": "27253329", "url": "https://pubmed.ncbi.nlm.nih.gov/27253329" }, { "database": "PubMed", "id": "30356330", "url": "https://pubmed.ncbi.nlm.nih.gov/30356330" }, { "database": "PubMed", "id": "33482200", "url": "https://pubmed.ncbi.nlm.nih.gov/33482200" }, { "database": "PubMed", "id": "7961936", "url": "https://pubmed.ncbi.nlm.nih.gov/7961936" }, { "database": "PubMed", "id": "9199177", "url": "https://pubmed.ncbi.nlm.nih.gov/9199177" } ], "site_lbl": "Tyr493", "uniprot_canonical_ac": "P43403-1" } ], "record_id": "pubmed.11514606", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 3 }, { "field": "total_sites", "count": 3 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Tyrosine 315 determines optimal recruitment of ZAP-70 to the T cell antigen receptor.", "journal": "European journal of immunology", "date": "2002", "authors": "Di Bartolo V, Malissen M, Dufour E, Sechet E, Malissen B, Acuto O", "reference": { "type": "PubMed", "id": "11828374", "url": "https://pubmed.ncbi.nlm.nih.gov/11828374" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P43403-1", "protein_name": "Tyrosine-protein kinase ZAP-70", "gene_name": "ZAP70", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P43403", "url": "https://www.uniprot.org/uniprotkb/P43403" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 315, "end_pos": 315, "sequence_org": "Y", "sequence_mut": "A", "comment": "Increased constitutive kinase activity; when associated with F-319.", "evidence": [ { "database": "UniProtKB", "id": "P43403", "url": "https://www.uniprot.org/uniprotkb/P43403" }, { "database": "PubMed", "id": "17512407", "url": "https://pubmed.ncbi.nlm.nih.gov/17512407" }, { "database": "PubMed", "id": "10037717", "url": "https://pubmed.ncbi.nlm.nih.gov/10037717" }, { "database": "PubMed", "id": "9151714", "url": "https://pubmed.ncbi.nlm.nih.gov/9151714" }, { "database": "PubMed", "id": "11828374", "url": "https://pubmed.ncbi.nlm.nih.gov/11828374" } ], "uniprot_canonical_ac": "P43403-1" }, { "start_pos": 315, "end_pos": 315, "sequence_org": "Y", "sequence_mut": "F", "comment": "Increased constitutive kinase activity; when associated with F-319. About 75% loss of CD247/CD3Z-binding in stimulated TCR and complete loss of VAV1 interaction.", "evidence": [ { "database": "UniProtKB", "id": "P43403", "url": "https://www.uniprot.org/uniprotkb/P43403" }, { "database": "PubMed", "id": "17512407", "url": "https://pubmed.ncbi.nlm.nih.gov/17512407" }, { "database": "PubMed", "id": "10037717", "url": "https://pubmed.ncbi.nlm.nih.gov/10037717" }, { "database": "PubMed", "id": "9151714", "url": "https://pubmed.ncbi.nlm.nih.gov/9151714" }, { "database": "PubMed", "id": "11828374", "url": "https://pubmed.ncbi.nlm.nih.gov/11828374" } ], "uniprot_canonical_ac": "P43403-1" } ], "phosphorylation": [ { "start_pos": 315, "end_pos": 315, "kinase_uniprot_canonical_ac": "P43403-1", "kinase_gene_name": "ZAP70", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P43403", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43403" }, { "database": "PubMed", "id": "10037717", "url": "https://pubmed.ncbi.nlm.nih.gov/10037717" }, { "database": "PubMed", "id": "8756661", "url": "https://pubmed.ncbi.nlm.nih.gov/8756661" }, { "database": "PubMed", "id": "11828374", "url": "https://pubmed.ncbi.nlm.nih.gov/11828374" } ], "site_lbl": "Tyr315", "uniprot_canonical_ac": "P43403-1" } ], "record_id": "pubmed.11828374", "abstract": "", "glycosylation": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "CTLA-4 suppresses proximal TCR signaling in resting human CD4(+) T cells by inhibiting ZAP-70 Tyr(319) phosphorylation: a potential role for tyrosine phosphatases.", "journal": "Journal of immunology (Baltimore, Md. : 1950)", "date": "2002", "authors": "Guntermann C, Alexander DR", "reference": { "type": "PubMed", "id": "11970985", "url": "https://pubmed.ncbi.nlm.nih.gov/11970985" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P43403-1", "protein_name": "Tyrosine-protein kinase ZAP-70", "gene_name": "ZAP70", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P43403", "url": "https://www.uniprot.org/uniprotkb/P43403" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 319, "end_pos": 319, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "P43403", "url": "https://www.uniprot.org/uniprotkb/P43403" }, { "database": "PubMed", "id": "10037717", "url": "https://pubmed.ncbi.nlm.nih.gov/10037717" }, { "database": "IntAct", "id": "P43403", "url": "https://www.ebi.ac.uk/intact/interactors/id:P43403*" }, { "database": "iPTMnet", "id": "P43403", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43403" }, { "database": "PubMed", "id": "10318843", "url": "https://pubmed.ncbi.nlm.nih.gov/10318843" }, { "database": "PubMed", "id": "24256567", "url": "https://pubmed.ncbi.nlm.nih.gov/24256567" }, { "database": "PubMed", "id": "10202147", "url": "https://pubmed.ncbi.nlm.nih.gov/10202147" }, { "database": "PubMed", "id": "11514606", "url": "https://pubmed.ncbi.nlm.nih.gov/11514606" }, { "database": "PubMed", "id": "11970985", "url": "https://pubmed.ncbi.nlm.nih.gov/11970985" }, { "database": "PubMed", "id": "15337788", "url": "https://pubmed.ncbi.nlm.nih.gov/15337788" }, { "database": "PubMed", "id": "15996927", "url": "https://pubmed.ncbi.nlm.nih.gov/15996927" }, { "database": "PubMed", "id": "17250586", "url": "https://pubmed.ncbi.nlm.nih.gov/17250586" }, { "database": "PubMed", "id": "17942891", "url": "https://pubmed.ncbi.nlm.nih.gov/17942891" }, { "database": "PubMed", "id": "17960665", "url": "https://pubmed.ncbi.nlm.nih.gov/17960665" }, { "database": "PubMed", "id": "18378687", "url": "https://pubmed.ncbi.nlm.nih.gov/18378687" }, { "database": "PubMed", "id": "20682913", "url": "https://pubmed.ncbi.nlm.nih.gov/20682913" }, { "database": "PubMed", "id": "21103055", "url": "https://pubmed.ncbi.nlm.nih.gov/21103055" }, { "database": "PubMed", "id": "22665519", "url": "https://pubmed.ncbi.nlm.nih.gov/22665519" }, { "database": "PubMed", "id": "23758320", "url": "https://pubmed.ncbi.nlm.nih.gov/23758320" }, { "database": "PubMed", "id": "26783323", "url": "https://pubmed.ncbi.nlm.nih.gov/26783323" }, { "database": "PubMed", "id": "27210755", "url": "https://pubmed.ncbi.nlm.nih.gov/27210755" }, { "database": "PubMed", "id": "29456532", "url": "https://pubmed.ncbi.nlm.nih.gov/29456532" }, { "database": "PubMed", "id": "29915297", "url": "https://pubmed.ncbi.nlm.nih.gov/29915297" }, { "database": "PubMed", "id": "30356330", "url": "https://pubmed.ncbi.nlm.nih.gov/30356330" }, { "database": "PubMed", "id": "32974219", "url": "https://pubmed.ncbi.nlm.nih.gov/32974219" }, { "database": "PubMed", "id": "33225946", "url": "https://pubmed.ncbi.nlm.nih.gov/33225946" }, { "database": "PubMed", "id": "33482200", "url": "https://pubmed.ncbi.nlm.nih.gov/33482200" }, { "database": "PubMed", "id": "33917227", "url": "https://pubmed.ncbi.nlm.nih.gov/33917227" }, { "database": "PubMed", "id": "36078131", "url": "https://pubmed.ncbi.nlm.nih.gov/36078131" } ], "site_lbl": "Tyr319", "uniprot_canonical_ac": "P43403-1" } ], "record_id": "pubmed.11970985", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Activation of ZAP-70 through specific dephosphorylation at the inhibitory Tyr-292 by the low molecular weight phosphotyrosine phosphatase (LMPTP).", "journal": "The Journal of biological chemistry", "date": "2002", "authors": "Bottini N, Stefanini L, Williams S, Alonso A, Jascur T, Abraham RT, Couture C, Mustelin T", "reference": { "type": "PubMed", "id": "11976341", "url": "https://pubmed.ncbi.nlm.nih.gov/11976341" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P43403-1", "protein_name": "Tyrosine-protein kinase ZAP-70", "gene_name": "ZAP70", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P43403", "url": "https://www.uniprot.org/uniprotkb/P43403" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 493, "end_pos": 493, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "P43403", "url": "https://www.uniprot.org/uniprotkb/P43403" }, { "database": "PubMed", "id": "7781602", "url": "https://pubmed.ncbi.nlm.nih.gov/7781602" }, { "database": "PRO", "id": "P43403", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=P43403" }, { "database": "iPTMnet", "id": "P43403", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43403" }, { "database": "PubMed", "id": "11270871", "url": "https://pubmed.ncbi.nlm.nih.gov/11270871" }, { "database": "PubMed", "id": "11514606", "url": "https://pubmed.ncbi.nlm.nih.gov/11514606" }, { "database": "PubMed", "id": "11976341", "url": "https://pubmed.ncbi.nlm.nih.gov/11976341" }, { "database": "PubMed", "id": "18548611", "url": "https://pubmed.ncbi.nlm.nih.gov/18548611" }, { "database": "PubMed", "id": "21103055", "url": "https://pubmed.ncbi.nlm.nih.gov/21103055" }, { "database": "PubMed", "id": "21757751", "url": "https://pubmed.ncbi.nlm.nih.gov/21757751" }, { "database": "PubMed", "id": "23758320", "url": "https://pubmed.ncbi.nlm.nih.gov/23758320" }, { "database": "PubMed", "id": "23874979", "url": "https://pubmed.ncbi.nlm.nih.gov/23874979" }, { "database": "PubMed", "id": "24493801", "url": "https://pubmed.ncbi.nlm.nih.gov/24493801" }, { "database": "PubMed", "id": "26783323", "url": "https://pubmed.ncbi.nlm.nih.gov/26783323" }, { "database": "PubMed", "id": "27253329", "url": "https://pubmed.ncbi.nlm.nih.gov/27253329" }, { "database": "PubMed", "id": "30356330", "url": "https://pubmed.ncbi.nlm.nih.gov/30356330" }, { "database": "PubMed", "id": "33482200", "url": "https://pubmed.ncbi.nlm.nih.gov/33482200" }, { "database": "PubMed", "id": "7961936", "url": "https://pubmed.ncbi.nlm.nih.gov/7961936" }, { "database": "PubMed", "id": "9199177", "url": "https://pubmed.ncbi.nlm.nih.gov/9199177" } ], "site_lbl": "Tyr493", "uniprot_canonical_ac": "P43403-1" } ], "record_id": "pubmed.11976341", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Crystal structure and NMR studies of the apo SH2 domains of ZAP-70: two bikes rather than a tandem.", "journal": "Biochemistry", "date": "2002", "authors": "Folmer Rutger H A, Geschwindner Stefan, Xue Yafeng", "reference": { "type": "PubMed", "id": "12450381", "url": "https://pubmed.ncbi.nlm.nih.gov/12450381" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P43403-1", "protein_name": "Tyrosine-protein kinase ZAP-70", "gene_name": "ZAP70", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P43403", "url": "https://www.uniprot.org/uniprotkb/P43403" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.12450381", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "ZAP-70: a 70 kd protein-tyrosine kinase that associates with the TCR zeta chain.", "journal": "Cell", "date": "1992", "authors": "Chan AC, Iwashima M, Turck CW, Weiss A", "reference": { "type": "PubMed", "id": "1423621", "url": "https://pubmed.ncbi.nlm.nih.gov/1423621" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P43403-1", "protein_name": "Tyrosine-protein kinase ZAP-70", "gene_name": "ZAP70", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P43403", "url": "https://www.uniprot.org/uniprotkb/P43403" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.1423621", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Critical role of Ser-520 phosphorylation for membrane recruitment and activation of the ZAP-70 tyrosine kinase in T cells.", "journal": "Molecular and cellular biology", "date": "2003", "authors": "Yang Y, Villain P, Mustelin T, Couture C", "reference": { "type": "PubMed", "id": "14560012", "url": "https://pubmed.ncbi.nlm.nih.gov/14560012" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P43403-1", "protein_name": "Tyrosine-protein kinase ZAP-70", "gene_name": "ZAP70", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P43403", "url": "https://www.uniprot.org/uniprotkb/P43403" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 520, "end_pos": 520, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P43403", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43403" }, { "database": "PubMed", "id": "14560012", "url": "https://pubmed.ncbi.nlm.nih.gov/14560012" } ], "site_lbl": "Ser520", "uniprot_canonical_ac": "P43403-1" } ], "record_id": "pubmed.14560012", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Identification of a novel isoform of ZAP-70, truncated ZAP kinase.", "journal": "Biochem. Biophys. Res. Commun.", "date": "2004", "authors": "Kuroyama Hiroyuki, Ikeda Tohru, Kasai Michiyuki, Yamasaki Sho, Tatsumi Masashi, Utsuyama Masanori, Saito Takashi, Hirokawa Katsuiku", "reference": { "type": "PubMed", "id": "14985102", "url": "https://pubmed.ncbi.nlm.nih.gov/14985102" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P43403-1", "protein_name": "Tyrosine-protein kinase ZAP-70", "gene_name": "ZAP70", "tax_name": "Human" }, { "uniprot_canonical_ac": "P43404-1", "protein_name": "Tyrosine-protein kinase ZAP-70", "gene_name": "Zap70", "tax_name": "Mouse" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P43403", "url": "https://www.uniprot.org/uniprotkb/P43403" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.14985102", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Requirement for Abl kinases in T cell receptor signaling.", "journal": "Current biology : CB", "date": "2004", "authors": "Zipfel PA, Zhang W, Quiroz M, Pendergast AM", "reference": { "type": "PubMed", "id": "15268851", "url": "https://pubmed.ncbi.nlm.nih.gov/15268851" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P43403-1", "protein_name": "Tyrosine-protein kinase ZAP-70", "gene_name": "ZAP70", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P43403", "url": "https://www.uniprot.org/uniprotkb/P43403" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 319, "end_pos": 319, "kinase_uniprot_canonical_ac": "P00519-1", "kinase_gene_name": "ABL1", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P43403", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43403" }, { "database": "PubMed", "id": "15268851", "url": "https://pubmed.ncbi.nlm.nih.gov/15268851" } ], "site_lbl": "Tyr319", "uniprot_canonical_ac": "P43403-1" } ], "record_id": "pubmed.15268851", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The three-dimensional structure of the ZAP-70 kinase domain in complex with staurosporine: implications for the design of selective inhibitors.", "journal": "The Journal of biological chemistry", "date": "2004", "authors": "Jin L, Pluskey S, Petrella EC, Cantin SM, Gorga JC, Rynkiewicz MJ, Pandey P, Strickler JE, Babine RE, Weaver DT, Seidl KJ", "reference": { "type": "PubMed", "id": "15292186", "url": "https://pubmed.ncbi.nlm.nih.gov/15292186" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P43403-1", "protein_name": "Tyrosine-protein kinase ZAP-70", "gene_name": "ZAP70", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P43403", "url": "https://www.uniprot.org/uniprotkb/P43403" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 479, "end_pos": 479, "sequence_org": "D", "sequence_mut": "N", "comment": "Abolishes kinase activity.", "evidence": [ { "database": "UniProtKB", "id": "P43403", "url": "https://www.uniprot.org/uniprotkb/P43403" }, { "database": "PubMed", "id": "15292186", "url": "https://pubmed.ncbi.nlm.nih.gov/15292186" } ], "uniprot_canonical_ac": "P43403-1" } ], "record_id": "pubmed.15292186", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Inhibition of T cell receptor signal transduction by tyrosine kinase-interacting protein of Herpesvirus saimiri.", "journal": "The Journal of experimental medicine", "date": "2004", "authors": "Cho NH, Feng P, Lee SH, Lee BS, Liang X, Chang H, Jung JU", "reference": { "type": "PubMed", "id": "15337788", "url": "https://pubmed.ncbi.nlm.nih.gov/15337788" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P43403-1", "protein_name": "Tyrosine-protein kinase ZAP-70", "gene_name": "ZAP70", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P43403", "url": "https://www.uniprot.org/uniprotkb/P43403" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 319, "end_pos": 319, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "P43403", "url": "https://www.uniprot.org/uniprotkb/P43403" }, { "database": "PubMed", "id": "10037717", "url": "https://pubmed.ncbi.nlm.nih.gov/10037717" }, { "database": "IntAct", "id": "P43403", "url": "https://www.ebi.ac.uk/intact/interactors/id:P43403*" }, { "database": "iPTMnet", "id": "P43403", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43403" }, { "database": "PubMed", "id": "10318843", "url": "https://pubmed.ncbi.nlm.nih.gov/10318843" }, { "database": "PubMed", "id": "24256567", "url": "https://pubmed.ncbi.nlm.nih.gov/24256567" }, { "database": "PubMed", "id": "10202147", "url": "https://pubmed.ncbi.nlm.nih.gov/10202147" }, { "database": "PubMed", "id": "11514606", "url": "https://pubmed.ncbi.nlm.nih.gov/11514606" }, { "database": "PubMed", "id": "11970985", "url": "https://pubmed.ncbi.nlm.nih.gov/11970985" }, { "database": "PubMed", "id": "15337788", "url": "https://pubmed.ncbi.nlm.nih.gov/15337788" }, { "database": "PubMed", "id": "15996927", "url": "https://pubmed.ncbi.nlm.nih.gov/15996927" }, { "database": "PubMed", "id": "17250586", "url": "https://pubmed.ncbi.nlm.nih.gov/17250586" }, { "database": "PubMed", "id": "17942891", "url": "https://pubmed.ncbi.nlm.nih.gov/17942891" }, { "database": "PubMed", "id": "17960665", "url": "https://pubmed.ncbi.nlm.nih.gov/17960665" }, { "database": "PubMed", "id": "18378687", "url": "https://pubmed.ncbi.nlm.nih.gov/18378687" }, { "database": "PubMed", "id": "20682913", "url": "https://pubmed.ncbi.nlm.nih.gov/20682913" }, { "database": "PubMed", "id": "21103055", "url": "https://pubmed.ncbi.nlm.nih.gov/21103055" }, { "database": "PubMed", "id": "22665519", "url": "https://pubmed.ncbi.nlm.nih.gov/22665519" }, { "database": "PubMed", "id": "23758320", "url": "https://pubmed.ncbi.nlm.nih.gov/23758320" }, { "database": "PubMed", "id": "26783323", "url": "https://pubmed.ncbi.nlm.nih.gov/26783323" }, { "database": "PubMed", "id": "27210755", "url": "https://pubmed.ncbi.nlm.nih.gov/27210755" }, { "database": "PubMed", "id": "29456532", "url": "https://pubmed.ncbi.nlm.nih.gov/29456532" }, { "database": "PubMed", "id": "29915297", "url": "https://pubmed.ncbi.nlm.nih.gov/29915297" }, { "database": "PubMed", "id": "30356330", "url": "https://pubmed.ncbi.nlm.nih.gov/30356330" }, { "database": "PubMed", "id": "32974219", "url": "https://pubmed.ncbi.nlm.nih.gov/32974219" }, { "database": "PubMed", "id": "33225946", "url": "https://pubmed.ncbi.nlm.nih.gov/33225946" }, { "database": "PubMed", "id": "33482200", "url": "https://pubmed.ncbi.nlm.nih.gov/33482200" }, { "database": "PubMed", "id": "33917227", "url": "https://pubmed.ncbi.nlm.nih.gov/33917227" }, { "database": "PubMed", "id": "36078131", "url": "https://pubmed.ncbi.nlm.nih.gov/36078131" } ], "site_lbl": "Tyr319", "uniprot_canonical_ac": "P43403-1" } ], "record_id": "pubmed.15337788", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "ZAP-70 tyrosine kinase is constitutively expressed and phosphorylated in B-lineage acute lymphoblastic leukemia cells.", "journal": "Haematologica", "date": "2005", "authors": "Guillaume N, Alleaume C, Munfus D, Capiod JC, Touati G, Pautard B, Desablens B, Lefrere JJ, Gouilleux F, Lassoued K, Gouilleux-Gruart V", "reference": { "type": "PubMed", "id": "15996927", "url": "https://pubmed.ncbi.nlm.nih.gov/15996927" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P43403-1", "protein_name": "Tyrosine-protein kinase ZAP-70", "gene_name": "ZAP70", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P43403", "url": "https://www.uniprot.org/uniprotkb/P43403" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 319, "end_pos": 319, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "P43403", "url": "https://www.uniprot.org/uniprotkb/P43403" }, { "database": "PubMed", "id": "10037717", "url": "https://pubmed.ncbi.nlm.nih.gov/10037717" }, { "database": "IntAct", "id": "P43403", "url": "https://www.ebi.ac.uk/intact/interactors/id:P43403*" }, { "database": "iPTMnet", "id": "P43403", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43403" }, { "database": "PubMed", "id": "10318843", "url": "https://pubmed.ncbi.nlm.nih.gov/10318843" }, { "database": "PubMed", "id": "24256567", "url": "https://pubmed.ncbi.nlm.nih.gov/24256567" }, { "database": "PubMed", "id": "10202147", "url": "https://pubmed.ncbi.nlm.nih.gov/10202147" }, { "database": "PubMed", "id": "11514606", "url": "https://pubmed.ncbi.nlm.nih.gov/11514606" }, { "database": "PubMed", "id": "11970985", "url": "https://pubmed.ncbi.nlm.nih.gov/11970985" }, { "database": "PubMed", "id": "15337788", "url": "https://pubmed.ncbi.nlm.nih.gov/15337788" }, { "database": "PubMed", "id": "15996927", "url": "https://pubmed.ncbi.nlm.nih.gov/15996927" }, { "database": "PubMed", "id": "17250586", "url": "https://pubmed.ncbi.nlm.nih.gov/17250586" }, { "database": "PubMed", "id": "17942891", "url": "https://pubmed.ncbi.nlm.nih.gov/17942891" }, { "database": "PubMed", "id": "17960665", "url": "https://pubmed.ncbi.nlm.nih.gov/17960665" }, { "database": "PubMed", "id": "18378687", "url": "https://pubmed.ncbi.nlm.nih.gov/18378687" }, { "database": "PubMed", "id": "20682913", "url": "https://pubmed.ncbi.nlm.nih.gov/20682913" }, { "database": "PubMed", "id": "21103055", "url": "https://pubmed.ncbi.nlm.nih.gov/21103055" }, { "database": "PubMed", "id": "22665519", "url": "https://pubmed.ncbi.nlm.nih.gov/22665519" }, { "database": "PubMed", "id": "23758320", "url": "https://pubmed.ncbi.nlm.nih.gov/23758320" }, { "database": "PubMed", "id": "26783323", "url": "https://pubmed.ncbi.nlm.nih.gov/26783323" }, { "database": "PubMed", "id": "27210755", "url": "https://pubmed.ncbi.nlm.nih.gov/27210755" }, { "database": "PubMed", "id": "29456532", "url": "https://pubmed.ncbi.nlm.nih.gov/29456532" }, { "database": "PubMed", "id": "29915297", "url": "https://pubmed.ncbi.nlm.nih.gov/29915297" }, { "database": "PubMed", "id": "30356330", "url": "https://pubmed.ncbi.nlm.nih.gov/30356330" }, { "database": "PubMed", "id": "32974219", "url": "https://pubmed.ncbi.nlm.nih.gov/32974219" }, { "database": "PubMed", "id": "33225946", "url": "https://pubmed.ncbi.nlm.nih.gov/33225946" }, { "database": "PubMed", "id": "33482200", "url": "https://pubmed.ncbi.nlm.nih.gov/33482200" }, { "database": "PubMed", "id": "33917227", "url": "https://pubmed.ncbi.nlm.nih.gov/33917227" }, { "database": "PubMed", "id": "36078131", "url": "https://pubmed.ncbi.nlm.nih.gov/36078131" } ], "site_lbl": "Tyr319", "uniprot_canonical_ac": "P43403-1" } ], "record_id": "pubmed.15996927", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Determination of regulatory phosphorylation sites in nanogram amounts of a synthetic fragment of ZAP-70 using microprobe NMR and on-line coupled capillary HPLC-NMR.", "journal": "Magnetic resonance in chemistry : MRC", "date": "2005", "authors": "Hentschel P, Krucker M, Grynbaum MD, Putzbach K, Bischoff R, Albert K", "reference": { "type": "PubMed", "id": "16049944", "url": "https://pubmed.ncbi.nlm.nih.gov/16049944" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P43403-1", "protein_name": "Tyrosine-protein kinase ZAP-70", "gene_name": "ZAP70", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P43403", "url": "https://www.uniprot.org/uniprotkb/P43403" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 493, "end_pos": 493, "kinase_uniprot_canonical_ac": "P43403-1", "kinase_gene_name": "ZAP70", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P43403", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43403" }, { "database": "PubMed", "id": "16049944", "url": "https://pubmed.ncbi.nlm.nih.gov/16049944" } ], "site_lbl": "Tyr493", "uniprot_canonical_ac": "P43403-1" } ], "record_id": "pubmed.16049944", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "ZAP-70 expression in normal pro/pre B cells, mature B cells, and in B-cell acute lymphoblastic leukemia.", "journal": "Clin. Cancer Res.", "date": "2006", "authors": "Crespo Marta, Villamor Neus, Gin\u00e9 Eva, Munta\u00f1ola Ana, Colomer Dolors, Marafioti Teresa, Jones Margaret, Cam\u00f3s Mireia, Campo Elias, Montserrat Emili, Bosch Francesc", "reference": { "type": "PubMed", "id": "16467082", "url": "https://pubmed.ncbi.nlm.nih.gov/16467082" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P43403-1", "protein_name": "Tyrosine-protein kinase ZAP-70", "gene_name": "ZAP70", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P43403", "url": "https://www.uniprot.org/uniprotkb/P43403" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.16467082", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "CXCR3-mediated T-cell chemotaxis involves ZAP-70 and is regulated by signalling through the T-cell receptor.", "journal": "Immunology", "date": "2007", "authors": "Dar WA, Knechtle SJ", "reference": { "type": "PubMed", "id": "17250586", "url": "https://pubmed.ncbi.nlm.nih.gov/17250586" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P43403-1", "protein_name": "Tyrosine-protein kinase ZAP-70", "gene_name": "ZAP70", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P43403", "url": "https://www.uniprot.org/uniprotkb/P43403" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 319, "end_pos": 319, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "P43403", "url": "https://www.uniprot.org/uniprotkb/P43403" }, { "database": "PubMed", "id": "10037717", "url": "https://pubmed.ncbi.nlm.nih.gov/10037717" }, { "database": "IntAct", "id": "P43403", "url": "https://www.ebi.ac.uk/intact/interactors/id:P43403*" }, { "database": "iPTMnet", "id": "P43403", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43403" }, { "database": "PubMed", "id": "10318843", "url": "https://pubmed.ncbi.nlm.nih.gov/10318843" }, { "database": "PubMed", "id": "24256567", "url": "https://pubmed.ncbi.nlm.nih.gov/24256567" }, { "database": "PubMed", "id": "10202147", "url": "https://pubmed.ncbi.nlm.nih.gov/10202147" }, { "database": "PubMed", "id": "11514606", "url": "https://pubmed.ncbi.nlm.nih.gov/11514606" }, { "database": "PubMed", "id": "11970985", "url": "https://pubmed.ncbi.nlm.nih.gov/11970985" }, { "database": "PubMed", "id": "15337788", "url": "https://pubmed.ncbi.nlm.nih.gov/15337788" }, { "database": "PubMed", "id": "15996927", "url": "https://pubmed.ncbi.nlm.nih.gov/15996927" }, { "database": "PubMed", "id": "17250586", "url": "https://pubmed.ncbi.nlm.nih.gov/17250586" }, { "database": "PubMed", "id": "17942891", "url": "https://pubmed.ncbi.nlm.nih.gov/17942891" }, { "database": "PubMed", "id": "17960665", "url": "https://pubmed.ncbi.nlm.nih.gov/17960665" }, { "database": "PubMed", "id": "18378687", "url": "https://pubmed.ncbi.nlm.nih.gov/18378687" }, { "database": "PubMed", "id": "20682913", "url": "https://pubmed.ncbi.nlm.nih.gov/20682913" }, { "database": "PubMed", "id": "21103055", "url": "https://pubmed.ncbi.nlm.nih.gov/21103055" }, { "database": "PubMed", "id": "22665519", "url": "https://pubmed.ncbi.nlm.nih.gov/22665519" }, { "database": "PubMed", "id": "23758320", "url": "https://pubmed.ncbi.nlm.nih.gov/23758320" }, { "database": "PubMed", "id": "26783323", "url": "https://pubmed.ncbi.nlm.nih.gov/26783323" }, { "database": "PubMed", "id": "27210755", "url": "https://pubmed.ncbi.nlm.nih.gov/27210755" }, { "database": "PubMed", "id": "29456532", "url": "https://pubmed.ncbi.nlm.nih.gov/29456532" }, { "database": "PubMed", "id": "29915297", "url": "https://pubmed.ncbi.nlm.nih.gov/29915297" }, { "database": "PubMed", "id": "30356330", "url": "https://pubmed.ncbi.nlm.nih.gov/30356330" }, { "database": "PubMed", "id": "32974219", "url": "https://pubmed.ncbi.nlm.nih.gov/32974219" }, { "database": "PubMed", "id": "33225946", "url": "https://pubmed.ncbi.nlm.nih.gov/33225946" }, { "database": "PubMed", "id": "33482200", "url": "https://pubmed.ncbi.nlm.nih.gov/33482200" }, { "database": "PubMed", "id": "33917227", "url": "https://pubmed.ncbi.nlm.nih.gov/33917227" }, { "database": "PubMed", "id": "36078131", "url": "https://pubmed.ncbi.nlm.nih.gov/36078131" } ], "site_lbl": "Tyr319", "uniprot_canonical_ac": "P43403-1" } ], "record_id": "pubmed.17250586", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Structural basis for the inhibition of tyrosine kinase activity of ZAP-70.", "journal": "Cell", "date": "2007", "authors": "Deindl S, Kadlecek TA, Brdicka T, Cao X, Weiss A, Kuriyan J", "reference": { "type": "PubMed", "id": "17512407", "url": "https://pubmed.ncbi.nlm.nih.gov/17512407" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P43403-1", "protein_name": "Tyrosine-protein kinase ZAP-70", "gene_name": "ZAP70", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P43403", "url": "https://www.uniprot.org/uniprotkb/P43403" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 131, "end_pos": 131, "sequence_org": "W", "sequence_mut": "A", "comment": "Increased constitutive kinase activity.", "evidence": [ { "database": "UniProtKB", "id": "P43403", "url": "https://www.uniprot.org/uniprotkb/P43403" }, { "database": "PubMed", "id": "17512407", "url": "https://pubmed.ncbi.nlm.nih.gov/17512407" } ], "uniprot_canonical_ac": "P43403-1" }, { "start_pos": 133, "end_pos": 133, "sequence_org": "L", "sequence_mut": "A", "comment": "Increased constitutive kinase activity.", "evidence": [ { "database": "UniProtKB", "id": "P43403", "url": "https://www.uniprot.org/uniprotkb/P43403" }, { "database": "PubMed", "id": "17512407", "url": "https://pubmed.ncbi.nlm.nih.gov/17512407" } ], "uniprot_canonical_ac": "P43403-1" }, { "start_pos": 141, "end_pos": 141, "sequence_org": "A", "sequence_mut": "E", "comment": "Increased constitutive kinase activity.", "evidence": [ { "database": "UniProtKB", "id": "P43403", "url": "https://www.uniprot.org/uniprotkb/P43403" }, { "database": "PubMed", "id": "17512407", "url": "https://pubmed.ncbi.nlm.nih.gov/17512407" } ], "uniprot_canonical_ac": "P43403-1" }, { "start_pos": 144, "end_pos": 144, "sequence_org": "S", "sequence_mut": "A", "comment": "Increased kinase activity after activation by LCK.", "evidence": [ { "database": "UniProtKB", "id": "P43403", "url": "https://www.uniprot.org/uniprotkb/P43403" }, { "database": "PubMed", "id": "17512407", "url": "https://pubmed.ncbi.nlm.nih.gov/17512407" } ], "uniprot_canonical_ac": "P43403-1" }, { "start_pos": 145, "end_pos": 145, "sequence_org": "Q", "sequence_mut": "A", "comment": "Increased kinase activity after activation by LCK.", "evidence": [ { "database": "UniProtKB", "id": "P43403", "url": "https://www.uniprot.org/uniprotkb/P43403" }, { "database": "PubMed", "id": "17512407", "url": "https://pubmed.ncbi.nlm.nih.gov/17512407" } ], "uniprot_canonical_ac": "P43403-1" }, { "start_pos": 147, "end_pos": 147, "sequence_org": "P", "sequence_mut": "A", "comment": "Increased kinase activity after activation by LCK.", "evidence": [ { "database": "UniProtKB", "id": "P43403", "url": "https://www.uniprot.org/uniprotkb/P43403" }, { "database": "PubMed", "id": "17512407", "url": "https://pubmed.ncbi.nlm.nih.gov/17512407" } ], "uniprot_canonical_ac": "P43403-1" }, { "start_pos": 315, "end_pos": 315, "sequence_org": "Y", "sequence_mut": "A", "comment": "Increased constitutive kinase activity; when associated with F-319.", "evidence": [ { "database": "UniProtKB", "id": "P43403", "url": "https://www.uniprot.org/uniprotkb/P43403" }, { "database": "PubMed", "id": "17512407", "url": "https://pubmed.ncbi.nlm.nih.gov/17512407" }, { "database": "PubMed", "id": "10037717", "url": "https://pubmed.ncbi.nlm.nih.gov/10037717" }, { "database": "PubMed", "id": "9151714", "url": "https://pubmed.ncbi.nlm.nih.gov/9151714" }, { "database": "PubMed", "id": "11828374", "url": "https://pubmed.ncbi.nlm.nih.gov/11828374" } ], "uniprot_canonical_ac": "P43403-1" }, { "start_pos": 315, "end_pos": 315, "sequence_org": "Y", "sequence_mut": "F", "comment": "Increased constitutive kinase activity; when associated with F-319. About 75% loss of CD247/CD3Z-binding in stimulated TCR and complete loss of VAV1 interaction.", "evidence": [ { "database": "UniProtKB", "id": "P43403", "url": "https://www.uniprot.org/uniprotkb/P43403" }, { "database": "PubMed", "id": "17512407", "url": "https://pubmed.ncbi.nlm.nih.gov/17512407" }, { "database": "PubMed", "id": "10037717", "url": "https://pubmed.ncbi.nlm.nih.gov/10037717" }, { "database": "PubMed", "id": "9151714", "url": "https://pubmed.ncbi.nlm.nih.gov/9151714" }, { "database": "PubMed", "id": "11828374", "url": "https://pubmed.ncbi.nlm.nih.gov/11828374" } ], "uniprot_canonical_ac": "P43403-1" }, { "start_pos": 319, "end_pos": 319, "sequence_org": "Y", "sequence_mut": "A", "comment": "Increased constitutive kinase activity; when associated with F-315.", "evidence": [ { "database": "UniProtKB", "id": "P43403", "url": "https://www.uniprot.org/uniprotkb/P43403" }, { "database": "PubMed", "id": "17512407", "url": "https://pubmed.ncbi.nlm.nih.gov/17512407" }, { "database": "PubMed", "id": "10037717", "url": "https://pubmed.ncbi.nlm.nih.gov/10037717" } ], "uniprot_canonical_ac": "P43403-1" }, { "start_pos": 319, "end_pos": 319, "sequence_org": "Y", "sequence_mut": "F", "comment": "Increased constitutive kinase activity; when associated with F-315. About 80% loss of TCR-induced NFAT activation.", "evidence": [ { "database": "UniProtKB", "id": "P43403", "url": "https://www.uniprot.org/uniprotkb/P43403" }, { "database": "PubMed", "id": "17512407", "url": "https://pubmed.ncbi.nlm.nih.gov/17512407" }, { "database": "PubMed", "id": "10037717", "url": "https://pubmed.ncbi.nlm.nih.gov/10037717" } ], "uniprot_canonical_ac": "P43403-1" }, { "start_pos": 461, "end_pos": 461, "sequence_org": "D", "sequence_mut": "N", "comment": "Abolishes kinase activity.", "evidence": [ { "database": "UniProtKB", "id": "P43403", "url": "https://www.uniprot.org/uniprotkb/P43403" }, { "database": "PubMed", "id": "17512407", "url": "https://pubmed.ncbi.nlm.nih.gov/17512407" } ], "uniprot_canonical_ac": "P43403-1" }, { "start_pos": 597, "end_pos": 597, "sequence_org": "Y", "sequence_mut": "A", "comment": "Increased kinase activity after activation by LCK.", "evidence": [ { "database": "UniProtKB", "id": "P43403", "url": "https://www.uniprot.org/uniprotkb/P43403" }, { "database": "PubMed", "id": "17512407", "url": "https://pubmed.ncbi.nlm.nih.gov/17512407" } ], "uniprot_canonical_ac": "P43403-1" }, { "start_pos": 598, "end_pos": 598, "sequence_org": "Y", "sequence_mut": "A", "comment": "Increased kinase activity after activation by LCK.", "evidence": [ { "database": "UniProtKB", "id": "P43403", "url": "https://www.uniprot.org/uniprotkb/P43403" }, { "database": "PubMed", "id": "17512407", "url": "https://pubmed.ncbi.nlm.nih.gov/17512407" } ], "uniprot_canonical_ac": "P43403-1" } ], "record_id": "pubmed.17512407", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "c-Abl is required for the signaling transduction induced by L-selectin ligation.", "journal": "European journal of immunology", "date": "2007", "authors": "Chen C, Shang X, Xu T, Cui L, Luo J, Ba X, Hao S, Zeng X", "reference": { "type": "PubMed", "id": "17960665", "url": "https://pubmed.ncbi.nlm.nih.gov/17960665" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P43403-1", "protein_name": "Tyrosine-protein kinase ZAP-70", "gene_name": "ZAP70", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P43403", "url": "https://www.uniprot.org/uniprotkb/P43403" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 319, "end_pos": 319, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "P43403", "url": "https://www.uniprot.org/uniprotkb/P43403" }, { "database": "PubMed", "id": "10037717", "url": "https://pubmed.ncbi.nlm.nih.gov/10037717" }, { "database": "IntAct", "id": "P43403", "url": "https://www.ebi.ac.uk/intact/interactors/id:P43403*" }, { "database": "iPTMnet", "id": "P43403", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43403" }, { "database": "PubMed", "id": "10318843", "url": "https://pubmed.ncbi.nlm.nih.gov/10318843" }, { "database": "PubMed", "id": "24256567", "url": "https://pubmed.ncbi.nlm.nih.gov/24256567" }, { "database": "PubMed", "id": "10202147", "url": "https://pubmed.ncbi.nlm.nih.gov/10202147" }, { "database": "PubMed", "id": "11514606", "url": "https://pubmed.ncbi.nlm.nih.gov/11514606" }, { "database": "PubMed", "id": "11970985", "url": "https://pubmed.ncbi.nlm.nih.gov/11970985" }, { "database": "PubMed", "id": "15337788", "url": "https://pubmed.ncbi.nlm.nih.gov/15337788" }, { "database": "PubMed", "id": "15996927", "url": "https://pubmed.ncbi.nlm.nih.gov/15996927" }, { "database": "PubMed", "id": "17250586", "url": "https://pubmed.ncbi.nlm.nih.gov/17250586" }, { "database": "PubMed", "id": "17942891", "url": "https://pubmed.ncbi.nlm.nih.gov/17942891" }, { "database": "PubMed", "id": "17960665", "url": "https://pubmed.ncbi.nlm.nih.gov/17960665" }, { "database": "PubMed", "id": "18378687", "url": "https://pubmed.ncbi.nlm.nih.gov/18378687" }, { "database": "PubMed", "id": "20682913", "url": "https://pubmed.ncbi.nlm.nih.gov/20682913" }, { "database": "PubMed", "id": "21103055", "url": "https://pubmed.ncbi.nlm.nih.gov/21103055" }, { "database": "PubMed", "id": "22665519", "url": "https://pubmed.ncbi.nlm.nih.gov/22665519" }, { "database": "PubMed", "id": "23758320", "url": "https://pubmed.ncbi.nlm.nih.gov/23758320" }, { "database": "PubMed", "id": "26783323", "url": "https://pubmed.ncbi.nlm.nih.gov/26783323" }, { "database": "PubMed", "id": "27210755", "url": "https://pubmed.ncbi.nlm.nih.gov/27210755" }, { "database": "PubMed", "id": "29456532", "url": "https://pubmed.ncbi.nlm.nih.gov/29456532" }, { "database": "PubMed", "id": "29915297", "url": "https://pubmed.ncbi.nlm.nih.gov/29915297" }, { "database": "PubMed", "id": "30356330", "url": "https://pubmed.ncbi.nlm.nih.gov/30356330" }, { "database": "PubMed", "id": "32974219", "url": "https://pubmed.ncbi.nlm.nih.gov/32974219" }, { "database": "PubMed", "id": "33225946", "url": "https://pubmed.ncbi.nlm.nih.gov/33225946" }, { "database": "PubMed", "id": "33482200", "url": "https://pubmed.ncbi.nlm.nih.gov/33482200" }, { "database": "PubMed", "id": "33917227", "url": "https://pubmed.ncbi.nlm.nih.gov/33917227" }, { "database": "PubMed", "id": "36078131", "url": "https://pubmed.ncbi.nlm.nih.gov/36078131" } ], "site_lbl": "Tyr319", "uniprot_canonical_ac": "P43403-1" } ], "record_id": "pubmed.17960665", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Inhibition of ZAP-70 kinase activity via an analog-sensitive allele blocks T cell receptor and CD28 superagonist signaling.", "journal": "The Journal of biological chemistry", "date": "2008", "authors": "Levin SE, Zhang C, Kadlecek TA, Shokat KM, Weiss A", "reference": { "type": "PubMed", "id": "18378687", "url": "https://pubmed.ncbi.nlm.nih.gov/18378687" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P43403-1", "protein_name": "Tyrosine-protein kinase ZAP-70", "gene_name": "ZAP70", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P43403", "url": "https://www.uniprot.org/uniprotkb/P43403" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 319, "end_pos": 319, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "P43403", "url": "https://www.uniprot.org/uniprotkb/P43403" }, { "database": "PubMed", "id": "10037717", "url": "https://pubmed.ncbi.nlm.nih.gov/10037717" }, { "database": "IntAct", "id": "P43403", "url": "https://www.ebi.ac.uk/intact/interactors/id:P43403*" }, { "database": "iPTMnet", "id": "P43403", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43403" }, { "database": "PubMed", "id": "10318843", "url": "https://pubmed.ncbi.nlm.nih.gov/10318843" }, { "database": "PubMed", "id": "24256567", "url": "https://pubmed.ncbi.nlm.nih.gov/24256567" }, { "database": "PubMed", "id": "10202147", "url": "https://pubmed.ncbi.nlm.nih.gov/10202147" }, { "database": "PubMed", "id": "11514606", "url": "https://pubmed.ncbi.nlm.nih.gov/11514606" }, { "database": "PubMed", "id": "11970985", "url": "https://pubmed.ncbi.nlm.nih.gov/11970985" }, { "database": "PubMed", "id": "15337788", "url": "https://pubmed.ncbi.nlm.nih.gov/15337788" }, { "database": "PubMed", "id": "15996927", "url": "https://pubmed.ncbi.nlm.nih.gov/15996927" }, { "database": "PubMed", "id": "17250586", "url": "https://pubmed.ncbi.nlm.nih.gov/17250586" }, { "database": "PubMed", "id": "17942891", "url": "https://pubmed.ncbi.nlm.nih.gov/17942891" }, { "database": "PubMed", "id": "17960665", "url": "https://pubmed.ncbi.nlm.nih.gov/17960665" }, { "database": "PubMed", "id": "18378687", "url": "https://pubmed.ncbi.nlm.nih.gov/18378687" }, { "database": "PubMed", "id": "20682913", "url": "https://pubmed.ncbi.nlm.nih.gov/20682913" }, { "database": "PubMed", "id": "21103055", "url": "https://pubmed.ncbi.nlm.nih.gov/21103055" }, { "database": "PubMed", "id": "22665519", "url": "https://pubmed.ncbi.nlm.nih.gov/22665519" }, { "database": "PubMed", "id": "23758320", "url": "https://pubmed.ncbi.nlm.nih.gov/23758320" }, { "database": "PubMed", "id": "26783323", "url": "https://pubmed.ncbi.nlm.nih.gov/26783323" }, { "database": "PubMed", "id": "27210755", "url": "https://pubmed.ncbi.nlm.nih.gov/27210755" }, { "database": "PubMed", "id": "29456532", "url": "https://pubmed.ncbi.nlm.nih.gov/29456532" }, { "database": "PubMed", "id": "29915297", "url": "https://pubmed.ncbi.nlm.nih.gov/29915297" }, { "database": "PubMed", "id": "30356330", "url": "https://pubmed.ncbi.nlm.nih.gov/30356330" }, { "database": "PubMed", "id": "32974219", "url": "https://pubmed.ncbi.nlm.nih.gov/32974219" }, { "database": "PubMed", "id": "33225946", "url": "https://pubmed.ncbi.nlm.nih.gov/33225946" }, { "database": "PubMed", "id": "33482200", "url": "https://pubmed.ncbi.nlm.nih.gov/33482200" }, { "database": "PubMed", "id": "33917227", "url": "https://pubmed.ncbi.nlm.nih.gov/33917227" }, { "database": "PubMed", "id": "36078131", "url": "https://pubmed.ncbi.nlm.nih.gov/36078131" } ], "site_lbl": "Tyr319", "uniprot_canonical_ac": "P43403-1" } ], "record_id": "pubmed.18378687", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Clinical heterogeneity can hamper the diagnosis of patients with ZAP70 deficiency.", "journal": "European journal of pediatrics", "date": "2009", "authors": "Turul T, Tezcan I, Artac H, de Bruin-Versteeg S, Barendregt BH, Reisli I, Sanal O, van Dongen JJ, van der Burg M", "reference": { "type": "PubMed", "id": "18509675", "url": "https://pubmed.ncbi.nlm.nih.gov/18509675" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P43403-1", "protein_name": "Tyrosine-protein kinase ZAP-70", "gene_name": "ZAP70", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P43403", "url": "https://www.uniprot.org/uniprotkb/P43403" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.18509675", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Intracellular Phospho-Flow cytometry reveals novel insights into TCR proximal signaling events. A comparison with Western blot.", "journal": "Cytometry. Part A : the journal of the International Society for Analytical Cytology", "date": "2008", "authors": "Haas A, Weckbecker G, Welzenbach K", "reference": { "type": "PubMed", "id": "18548611", "url": "https://pubmed.ncbi.nlm.nih.gov/18548611" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P43403-1", "protein_name": "Tyrosine-protein kinase ZAP-70", "gene_name": "ZAP70", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P43403", "url": "https://www.uniprot.org/uniprotkb/P43403" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 292, "end_pos": 292, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "P43403", "url": "https://www.uniprot.org/uniprotkb/P43403" }, { "database": "PubMed", "id": "19690332", "url": "https://pubmed.ncbi.nlm.nih.gov/19690332" }, { "database": "PubMed", "id": "8943331", "url": "https://pubmed.ncbi.nlm.nih.gov/8943331" }, { "database": "iPTMnet", "id": "P43403", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43403" }, { "database": "PubMed", "id": "10779765", "url": "https://pubmed.ncbi.nlm.nih.gov/10779765" }, { "database": "PubMed", "id": "18548611", "url": "https://pubmed.ncbi.nlm.nih.gov/18548611" }, { "database": "PubMed", "id": "23874979", "url": "https://pubmed.ncbi.nlm.nih.gov/23874979" }, { "database": "PubMed", "id": "25682964", "url": "https://pubmed.ncbi.nlm.nih.gov/25682964" }, { "database": "PubMed", "id": "7961936", "url": "https://pubmed.ncbi.nlm.nih.gov/7961936" }, { "database": "PubMed", "id": "9199177", "url": "https://pubmed.ncbi.nlm.nih.gov/9199177" }, { "database": "PubMed", "id": "9407100", "url": "https://pubmed.ncbi.nlm.nih.gov/9407100" } ], "site_lbl": "Tyr292", "uniprot_canonical_ac": "P43403-1" }, { "start_pos": 493, "end_pos": 493, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "P43403", "url": "https://www.uniprot.org/uniprotkb/P43403" }, { "database": "PubMed", "id": "7781602", "url": "https://pubmed.ncbi.nlm.nih.gov/7781602" }, { "database": "PRO", "id": "P43403", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=P43403" }, { "database": "iPTMnet", "id": "P43403", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43403" }, { "database": "PubMed", "id": "11270871", "url": "https://pubmed.ncbi.nlm.nih.gov/11270871" }, { "database": "PubMed", "id": "11514606", "url": "https://pubmed.ncbi.nlm.nih.gov/11514606" }, { "database": "PubMed", "id": "11976341", "url": "https://pubmed.ncbi.nlm.nih.gov/11976341" }, { "database": "PubMed", "id": "18548611", "url": "https://pubmed.ncbi.nlm.nih.gov/18548611" }, { "database": "PubMed", "id": "21103055", "url": "https://pubmed.ncbi.nlm.nih.gov/21103055" }, { "database": "PubMed", "id": "21757751", "url": "https://pubmed.ncbi.nlm.nih.gov/21757751" }, { "database": "PubMed", "id": "23758320", "url": "https://pubmed.ncbi.nlm.nih.gov/23758320" }, { "database": "PubMed", "id": "23874979", "url": "https://pubmed.ncbi.nlm.nih.gov/23874979" }, { "database": "PubMed", "id": "24493801", "url": "https://pubmed.ncbi.nlm.nih.gov/24493801" }, { "database": "PubMed", "id": "26783323", "url": "https://pubmed.ncbi.nlm.nih.gov/26783323" }, { "database": "PubMed", "id": "27253329", "url": "https://pubmed.ncbi.nlm.nih.gov/27253329" }, { "database": "PubMed", "id": "30356330", "url": "https://pubmed.ncbi.nlm.nih.gov/30356330" }, { "database": "PubMed", "id": "33482200", "url": "https://pubmed.ncbi.nlm.nih.gov/33482200" }, { "database": "PubMed", "id": "7961936", "url": "https://pubmed.ncbi.nlm.nih.gov/7961936" }, { "database": "PubMed", "id": "9199177", "url": "https://pubmed.ncbi.nlm.nih.gov/9199177" } ], "site_lbl": "Tyr493", "uniprot_canonical_ac": "P43403-1" } ], "record_id": "pubmed.18548611", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "MTOC translocation modulates IS formation and controls sustained T cell signaling.", "journal": "The Journal of cell biology", "date": "2008", "authors": "Martin-Cofreces NB, Robles-Valero J, Cabrero JR, Mittelbrunn M, Gordon-Alonso M, Sung CH, Alarcon B, Vazquez J, Sanchez-Madrid F", "reference": { "type": "PubMed", "id": "18779373", "url": "https://pubmed.ncbi.nlm.nih.gov/18779373" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P43403-1", "protein_name": "Tyrosine-protein kinase ZAP-70", "gene_name": "ZAP70", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15498-1", "protein_name": "Proto-oncogene vav", "gene_name": "VAV1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P43403", "url": "https://www.uniprot.org/uniprotkb/P43403" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 315, "end_pos": 315, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine; by LCK", "evidence": [ { "database": "UniProtKB", "id": "P43403", "url": "https://www.uniprot.org/uniprotkb/P43403" }, { "database": "IntAct", "id": "P43403", "url": "https://www.ebi.ac.uk/intact/interactors/id:P43403*" }, { "database": "iPTMnet", "id": "P43403", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43403" }, { "database": "PubMed", "id": "16339550", "url": "https://pubmed.ncbi.nlm.nih.gov/16339550" }, { "database": "PubMed", "id": "9151714", "url": "https://pubmed.ncbi.nlm.nih.gov/9151714" }, { "database": "PRO", "id": "P43403", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=P43403" }, { "database": "PubMed", "id": "10037717", "url": "https://pubmed.ncbi.nlm.nih.gov/10037717" }, { "database": "PubMed", "id": "11514606", "url": "https://pubmed.ncbi.nlm.nih.gov/11514606" }, { "database": "PubMed", "id": "18779373", "url": "https://pubmed.ncbi.nlm.nih.gov/18779373" }, { "database": "PubMed", "id": "21103055", "url": "https://pubmed.ncbi.nlm.nih.gov/21103055" }, { "database": "PubMed", "id": "30356330", "url": "https://pubmed.ncbi.nlm.nih.gov/30356330" }, { "database": "PubMed", "id": "30692994", "url": "https://pubmed.ncbi.nlm.nih.gov/30692994" }, { "database": "PubMed", "id": "32974219", "url": "https://pubmed.ncbi.nlm.nih.gov/32974219" } ], "site_lbl": "Tyr315", "uniprot_canonical_ac": "P43403-1" }, { "start_pos": 174, "end_pos": 174, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "IntAct", "id": "P15498", "url": "https://www.ebi.ac.uk/intact/interactors/id:P15498*" }, { "database": "iPTMnet", "id": "P15498", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P15498" }, { "database": "PubMed", "id": "17050525", "url": "https://pubmed.ncbi.nlm.nih.gov/17050525" }, { "database": "PRO", "id": "P15498", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=P15498" }, { "database": "PubMed", "id": "10544657", "url": "https://pubmed.ncbi.nlm.nih.gov/10544657" }, { "database": "PubMed", "id": "10636924", "url": "https://pubmed.ncbi.nlm.nih.gov/10636924" }, { "database": "PubMed", "id": "10669745", "url": "https://pubmed.ncbi.nlm.nih.gov/10669745" }, { "database": "PubMed", "id": "16285729", "url": "https://pubmed.ncbi.nlm.nih.gov/16285729" }, { "database": "PubMed", "id": "18301737", "url": "https://pubmed.ncbi.nlm.nih.gov/18301737" }, { "database": "PubMed", "id": "18779373", "url": "https://pubmed.ncbi.nlm.nih.gov/18779373" }, { "database": "PubMed", "id": "19412549", "url": "https://pubmed.ncbi.nlm.nih.gov/19412549" }, { "database": "PubMed", "id": "20028078", "url": "https://pubmed.ncbi.nlm.nih.gov/20028078" }, { "database": "PubMed", "id": "23620790", "url": "https://pubmed.ncbi.nlm.nih.gov/23620790" }, { "database": "PubMed", "id": "23758320", "url": "https://pubmed.ncbi.nlm.nih.gov/23758320" }, { "database": "PubMed", "id": "26659126", "url": "https://pubmed.ncbi.nlm.nih.gov/26659126" }, { "database": "PubMed", "id": "27926862", "url": "https://pubmed.ncbi.nlm.nih.gov/27926862" }, { "database": "PubMed", "id": "28507287", "url": "https://pubmed.ncbi.nlm.nih.gov/28507287" }, { "database": "PubMed", "id": "28832024", "url": "https://pubmed.ncbi.nlm.nih.gov/28832024" }, { "database": "PubMed", "id": "29058761", "url": "https://pubmed.ncbi.nlm.nih.gov/29058761" }, { "database": "PubMed", "id": "32698503", "url": "https://pubmed.ncbi.nlm.nih.gov/32698503" } ], "site_lbl": "Tyr174", "uniprot_canonical_ac": "P15498-1" } ], "record_id": "pubmed.18779373", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The structure, regulation, and function of ZAP-70.", "journal": "Immunol. Rev.", "date": "2009", "authors": "Au-Yeung Byron B, Deindl Sebastian, Hsu Lih-Yun, Palacios Emil H, Levin Susan E, Kuriyan John, Weiss Arthur", "reference": { "type": "PubMed", "id": "19290920", "url": "https://pubmed.ncbi.nlm.nih.gov/19290920" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P43403-1", "protein_name": "Tyrosine-protein kinase ZAP-70", "gene_name": "ZAP70", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P43403", "url": "https://www.uniprot.org/uniprotkb/P43403" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.19290920", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "ZAP70: a master regulator of adaptive immunity.", "journal": "Seminars in immunopathology", "date": "2010-06", "authors": "Fischer Alain, Picard Capucine, Chemin Karine, Dogniaux St\u00e9phanie, le Deist Fran\u00e7oise, Hivroz Claire", "reference": { "type": "PubMed", "id": "20135127", "url": "https://pubmed.ncbi.nlm.nih.gov/20135127" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P43403-1", "protein_name": "Tyrosine-protein kinase ZAP-70", "gene_name": "ZAP70", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P43403", "url": "https://www.uniprot.org/uniprotkb/P43403" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.20135127", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The nonphagocytic NADPH oxidase Duox1 mediates a positive feedback loop during T cell receptor signaling.", "journal": "Science signaling", "date": "2010", "authors": "Kwon J, Shatynski KE, Chen H, Morand S, de Deken X, Miot F, Leto TL, Williams MS", "reference": { "type": "PubMed", "id": "20682913", "url": "https://pubmed.ncbi.nlm.nih.gov/20682913" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P43403-1", "protein_name": "Tyrosine-protein kinase ZAP-70", "gene_name": "ZAP70", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P43403", "url": "https://www.uniprot.org/uniprotkb/P43403" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 319, "end_pos": 319, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "P43403", "url": "https://www.uniprot.org/uniprotkb/P43403" }, { "database": "PubMed", "id": "10037717", "url": "https://pubmed.ncbi.nlm.nih.gov/10037717" }, { "database": "IntAct", "id": "P43403", "url": "https://www.ebi.ac.uk/intact/interactors/id:P43403*" }, { "database": "iPTMnet", "id": "P43403", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43403" }, { "database": "PubMed", "id": "10318843", "url": "https://pubmed.ncbi.nlm.nih.gov/10318843" }, { "database": "PubMed", "id": "24256567", "url": "https://pubmed.ncbi.nlm.nih.gov/24256567" }, { "database": "PubMed", "id": "10202147", "url": "https://pubmed.ncbi.nlm.nih.gov/10202147" }, { "database": "PubMed", "id": "11514606", "url": "https://pubmed.ncbi.nlm.nih.gov/11514606" }, { "database": "PubMed", "id": "11970985", "url": "https://pubmed.ncbi.nlm.nih.gov/11970985" }, { "database": "PubMed", "id": "15337788", "url": "https://pubmed.ncbi.nlm.nih.gov/15337788" }, { "database": "PubMed", "id": "15996927", "url": "https://pubmed.ncbi.nlm.nih.gov/15996927" }, { "database": "PubMed", "id": "17250586", "url": "https://pubmed.ncbi.nlm.nih.gov/17250586" }, { "database": "PubMed", "id": "17942891", "url": "https://pubmed.ncbi.nlm.nih.gov/17942891" }, { "database": "PubMed", "id": "17960665", "url": "https://pubmed.ncbi.nlm.nih.gov/17960665" }, { "database": "PubMed", "id": "18378687", "url": "https://pubmed.ncbi.nlm.nih.gov/18378687" }, { "database": "PubMed", "id": "20682913", "url": "https://pubmed.ncbi.nlm.nih.gov/20682913" }, { "database": "PubMed", "id": "21103055", "url": "https://pubmed.ncbi.nlm.nih.gov/21103055" }, { "database": "PubMed", "id": "22665519", "url": "https://pubmed.ncbi.nlm.nih.gov/22665519" }, { "database": "PubMed", "id": "23758320", "url": "https://pubmed.ncbi.nlm.nih.gov/23758320" }, { "database": "PubMed", "id": "26783323", "url": "https://pubmed.ncbi.nlm.nih.gov/26783323" }, { "database": "PubMed", "id": "27210755", "url": "https://pubmed.ncbi.nlm.nih.gov/27210755" }, { "database": "PubMed", "id": "29456532", "url": "https://pubmed.ncbi.nlm.nih.gov/29456532" }, { "database": "PubMed", "id": "29915297", "url": "https://pubmed.ncbi.nlm.nih.gov/29915297" }, { "database": "PubMed", "id": "30356330", "url": "https://pubmed.ncbi.nlm.nih.gov/30356330" }, { "database": "PubMed", "id": "32974219", "url": "https://pubmed.ncbi.nlm.nih.gov/32974219" }, { "database": "PubMed", "id": "33225946", "url": "https://pubmed.ncbi.nlm.nih.gov/33225946" }, { "database": "PubMed", "id": "33482200", "url": "https://pubmed.ncbi.nlm.nih.gov/33482200" }, { "database": "PubMed", "id": "33917227", "url": "https://pubmed.ncbi.nlm.nih.gov/33917227" }, { "database": "PubMed", "id": "36078131", "url": "https://pubmed.ncbi.nlm.nih.gov/36078131" } ], "site_lbl": "Tyr319", "uniprot_canonical_ac": "P43403-1" } ], "record_id": "pubmed.20682913", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "RhoH regulates subcellular localization of ZAP-70 and Lck in T cell receptor signaling.", "journal": "PloS one", "date": "2010", "authors": "Chae HD, Siefring JE, Hildeman DA, Gu Y, Williams DA", "reference": { "type": "PubMed", "id": "21103055", "url": "https://pubmed.ncbi.nlm.nih.gov/21103055" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P43403-1", "protein_name": "Tyrosine-protein kinase ZAP-70", "gene_name": "ZAP70", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P43403", "url": "https://www.uniprot.org/uniprotkb/P43403" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 315, "end_pos": 315, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine; by LCK", "evidence": [ { "database": "UniProtKB", "id": "P43403", "url": "https://www.uniprot.org/uniprotkb/P43403" }, { "database": "IntAct", "id": "P43403", "url": "https://www.ebi.ac.uk/intact/interactors/id:P43403*" }, { "database": "iPTMnet", "id": "P43403", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43403" }, { "database": "PubMed", "id": "16339550", "url": "https://pubmed.ncbi.nlm.nih.gov/16339550" }, { "database": "PubMed", "id": "9151714", "url": "https://pubmed.ncbi.nlm.nih.gov/9151714" }, { "database": "PRO", "id": "P43403", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=P43403" }, { "database": "PubMed", "id": "10037717", "url": "https://pubmed.ncbi.nlm.nih.gov/10037717" }, { "database": "PubMed", "id": "11514606", "url": "https://pubmed.ncbi.nlm.nih.gov/11514606" }, { "database": "PubMed", "id": "18779373", "url": "https://pubmed.ncbi.nlm.nih.gov/18779373" }, { "database": "PubMed", "id": "21103055", "url": "https://pubmed.ncbi.nlm.nih.gov/21103055" }, { "database": "PubMed", "id": "30356330", "url": "https://pubmed.ncbi.nlm.nih.gov/30356330" }, { "database": "PubMed", "id": "30692994", "url": "https://pubmed.ncbi.nlm.nih.gov/30692994" }, { "database": "PubMed", "id": "32974219", "url": "https://pubmed.ncbi.nlm.nih.gov/32974219" } ], "site_lbl": "Tyr315", "uniprot_canonical_ac": "P43403-1" }, { "start_pos": 319, "end_pos": 319, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "P43403", "url": "https://www.uniprot.org/uniprotkb/P43403" }, { "database": "PubMed", "id": "10037717", "url": "https://pubmed.ncbi.nlm.nih.gov/10037717" }, { "database": "IntAct", "id": "P43403", "url": "https://www.ebi.ac.uk/intact/interactors/id:P43403*" }, { "database": "iPTMnet", "id": "P43403", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43403" }, { "database": "PubMed", "id": "10318843", "url": "https://pubmed.ncbi.nlm.nih.gov/10318843" }, { "database": "PubMed", "id": "24256567", "url": "https://pubmed.ncbi.nlm.nih.gov/24256567" }, { "database": "PubMed", "id": "10202147", "url": "https://pubmed.ncbi.nlm.nih.gov/10202147" }, { "database": "PubMed", "id": "11514606", "url": "https://pubmed.ncbi.nlm.nih.gov/11514606" }, { "database": "PubMed", "id": "11970985", "url": "https://pubmed.ncbi.nlm.nih.gov/11970985" }, { "database": "PubMed", "id": "15337788", "url": "https://pubmed.ncbi.nlm.nih.gov/15337788" }, { "database": "PubMed", "id": "15996927", "url": "https://pubmed.ncbi.nlm.nih.gov/15996927" }, { "database": "PubMed", "id": "17250586", "url": "https://pubmed.ncbi.nlm.nih.gov/17250586" }, { "database": "PubMed", "id": "17942891", "url": "https://pubmed.ncbi.nlm.nih.gov/17942891" }, { "database": "PubMed", "id": "17960665", "url": "https://pubmed.ncbi.nlm.nih.gov/17960665" }, { "database": "PubMed", "id": "18378687", "url": "https://pubmed.ncbi.nlm.nih.gov/18378687" }, { "database": "PubMed", "id": "20682913", "url": "https://pubmed.ncbi.nlm.nih.gov/20682913" }, { "database": "PubMed", "id": "21103055", "url": "https://pubmed.ncbi.nlm.nih.gov/21103055" }, { "database": "PubMed", "id": "22665519", "url": "https://pubmed.ncbi.nlm.nih.gov/22665519" }, { "database": "PubMed", "id": "23758320", "url": "https://pubmed.ncbi.nlm.nih.gov/23758320" }, { "database": "PubMed", "id": "26783323", "url": "https://pubmed.ncbi.nlm.nih.gov/26783323" }, { "database": "PubMed", "id": "27210755", "url": "https://pubmed.ncbi.nlm.nih.gov/27210755" }, { "database": "PubMed", "id": "29456532", "url": "https://pubmed.ncbi.nlm.nih.gov/29456532" }, { "database": "PubMed", "id": "29915297", "url": "https://pubmed.ncbi.nlm.nih.gov/29915297" }, { "database": "PubMed", "id": "30356330", "url": "https://pubmed.ncbi.nlm.nih.gov/30356330" }, { "database": "PubMed", "id": "32974219", "url": "https://pubmed.ncbi.nlm.nih.gov/32974219" }, { "database": "PubMed", "id": "33225946", "url": "https://pubmed.ncbi.nlm.nih.gov/33225946" }, { "database": "PubMed", "id": "33482200", "url": "https://pubmed.ncbi.nlm.nih.gov/33482200" }, { "database": "PubMed", "id": "33917227", "url": "https://pubmed.ncbi.nlm.nih.gov/33917227" }, { "database": "PubMed", "id": "36078131", "url": "https://pubmed.ncbi.nlm.nih.gov/36078131" } ], "site_lbl": "Tyr319", "uniprot_canonical_ac": "P43403-1" }, { "start_pos": 493, "end_pos": 493, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "P43403", "url": "https://www.uniprot.org/uniprotkb/P43403" }, { "database": "PubMed", "id": "7781602", "url": "https://pubmed.ncbi.nlm.nih.gov/7781602" }, { "database": "PRO", "id": "P43403", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=P43403" }, { "database": "iPTMnet", "id": "P43403", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43403" }, { "database": "PubMed", "id": "11270871", "url": "https://pubmed.ncbi.nlm.nih.gov/11270871" }, { "database": "PubMed", "id": "11514606", "url": "https://pubmed.ncbi.nlm.nih.gov/11514606" }, { "database": "PubMed", "id": "11976341", "url": "https://pubmed.ncbi.nlm.nih.gov/11976341" }, { "database": "PubMed", "id": "18548611", "url": "https://pubmed.ncbi.nlm.nih.gov/18548611" }, { "database": "PubMed", "id": "21103055", "url": "https://pubmed.ncbi.nlm.nih.gov/21103055" }, { "database": "PubMed", "id": "21757751", "url": "https://pubmed.ncbi.nlm.nih.gov/21757751" }, { "database": "PubMed", "id": "23758320", "url": "https://pubmed.ncbi.nlm.nih.gov/23758320" }, { "database": "PubMed", "id": "23874979", "url": "https://pubmed.ncbi.nlm.nih.gov/23874979" }, { "database": "PubMed", "id": "24493801", "url": "https://pubmed.ncbi.nlm.nih.gov/24493801" }, { "database": "PubMed", "id": "26783323", "url": "https://pubmed.ncbi.nlm.nih.gov/26783323" }, { "database": "PubMed", "id": "27253329", "url": "https://pubmed.ncbi.nlm.nih.gov/27253329" }, { "database": "PubMed", "id": "30356330", "url": "https://pubmed.ncbi.nlm.nih.gov/30356330" }, { "database": "PubMed", "id": "33482200", "url": "https://pubmed.ncbi.nlm.nih.gov/33482200" }, { "database": "PubMed", "id": "7961936", "url": "https://pubmed.ncbi.nlm.nih.gov/7961936" }, { "database": "PubMed", "id": "9199177", "url": "https://pubmed.ncbi.nlm.nih.gov/9199177" } ], "site_lbl": "Tyr493", "uniprot_canonical_ac": "P43403-1" } ], "record_id": "pubmed.21103055", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 3 }, { "field": "total_sites", "count": 3 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "F-actin polymerization and retrograde flow drive sustained PLCgamma1 signaling during T cell activation.", "journal": "The Journal of cell biology", "date": "2012", "authors": "Babich A, Li S, O'Connor RS, Milone MC, Freedman BD, Burkhardt JK", "reference": { "type": "PubMed", "id": "22665519", "url": "https://pubmed.ncbi.nlm.nih.gov/22665519" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P43403-1", "protein_name": "Tyrosine-protein kinase ZAP-70", "gene_name": "ZAP70", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19174-1", "protein_name": "1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-1", "gene_name": "PLCG1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P43403", "url": "https://www.uniprot.org/uniprotkb/P43403" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 319, "end_pos": 319, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "P43403", "url": "https://www.uniprot.org/uniprotkb/P43403" }, { "database": "PubMed", "id": "10037717", "url": "https://pubmed.ncbi.nlm.nih.gov/10037717" }, { "database": "IntAct", "id": "P43403", "url": "https://www.ebi.ac.uk/intact/interactors/id:P43403*" }, { "database": "iPTMnet", "id": "P43403", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43403" }, { "database": "PubMed", "id": "10318843", "url": "https://pubmed.ncbi.nlm.nih.gov/10318843" }, { "database": "PubMed", "id": "24256567", "url": "https://pubmed.ncbi.nlm.nih.gov/24256567" }, { "database": "PubMed", "id": "10202147", "url": "https://pubmed.ncbi.nlm.nih.gov/10202147" }, { "database": "PubMed", "id": "11514606", "url": "https://pubmed.ncbi.nlm.nih.gov/11514606" }, { "database": "PubMed", "id": "11970985", "url": "https://pubmed.ncbi.nlm.nih.gov/11970985" }, { "database": "PubMed", "id": "15337788", "url": "https://pubmed.ncbi.nlm.nih.gov/15337788" }, { "database": "PubMed", "id": "15996927", "url": "https://pubmed.ncbi.nlm.nih.gov/15996927" }, { "database": "PubMed", "id": "17250586", "url": "https://pubmed.ncbi.nlm.nih.gov/17250586" }, { "database": "PubMed", "id": "17942891", "url": "https://pubmed.ncbi.nlm.nih.gov/17942891" }, { "database": "PubMed", "id": "17960665", "url": "https://pubmed.ncbi.nlm.nih.gov/17960665" }, { "database": "PubMed", "id": "18378687", "url": "https://pubmed.ncbi.nlm.nih.gov/18378687" }, { "database": "PubMed", "id": "20682913", "url": "https://pubmed.ncbi.nlm.nih.gov/20682913" }, { "database": "PubMed", "id": "21103055", "url": "https://pubmed.ncbi.nlm.nih.gov/21103055" }, { "database": "PubMed", "id": "22665519", "url": "https://pubmed.ncbi.nlm.nih.gov/22665519" }, { "database": "PubMed", "id": "23758320", "url": "https://pubmed.ncbi.nlm.nih.gov/23758320" }, { "database": "PubMed", "id": "26783323", "url": "https://pubmed.ncbi.nlm.nih.gov/26783323" }, { "database": "PubMed", "id": "27210755", "url": "https://pubmed.ncbi.nlm.nih.gov/27210755" }, { "database": "PubMed", "id": "29456532", "url": "https://pubmed.ncbi.nlm.nih.gov/29456532" }, { "database": "PubMed", "id": "29915297", "url": "https://pubmed.ncbi.nlm.nih.gov/29915297" }, { "database": "PubMed", "id": "30356330", "url": "https://pubmed.ncbi.nlm.nih.gov/30356330" }, { "database": "PubMed", "id": "32974219", "url": "https://pubmed.ncbi.nlm.nih.gov/32974219" }, { "database": "PubMed", "id": "33225946", "url": "https://pubmed.ncbi.nlm.nih.gov/33225946" }, { "database": "PubMed", "id": "33482200", "url": "https://pubmed.ncbi.nlm.nih.gov/33482200" }, { "database": "PubMed", "id": "33917227", "url": "https://pubmed.ncbi.nlm.nih.gov/33917227" }, { "database": "PubMed", "id": "36078131", "url": "https://pubmed.ncbi.nlm.nih.gov/36078131" } ], "site_lbl": "Tyr319", "uniprot_canonical_ac": "P43403-1" }, { "start_pos": 783, "end_pos": 783, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine; by ITK, SYK and TXK", "evidence": [ { "database": "UniProtKB", "id": "P19174", "url": "https://www.uniprot.org/uniprotkb/P19174" }, { "database": "iPTMnet", "id": "P19174", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P19174" }, { "database": "PubMed", "id": "16497976", "url": "https://pubmed.ncbi.nlm.nih.gov/16497976" }, { "database": "PubMed", "id": "1689310", "url": "https://pubmed.ncbi.nlm.nih.gov/1689310" }, { "database": "PubMed", "id": "17016520", "url": "https://pubmed.ncbi.nlm.nih.gov/17016520" }, { "database": "PubMed", "id": "17389395", "url": "https://pubmed.ncbi.nlm.nih.gov/17389395" }, { "database": "PubMed", "id": "20068231", "url": "https://pubmed.ncbi.nlm.nih.gov/20068231" }, { "database": "PubMed", "id": "7682059", "url": "https://pubmed.ncbi.nlm.nih.gov/7682059" }, { "database": "PubMed", "id": "8657103", "url": "https://pubmed.ncbi.nlm.nih.gov/8657103" }, { "database": "PubMed", "id": "8885868", "url": "https://pubmed.ncbi.nlm.nih.gov/8885868" }, { "database": "PRO", "id": "P19174", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=P19174" }, { "database": "PubMed", "id": "14568990", "url": "https://pubmed.ncbi.nlm.nih.gov/14568990" }, { "database": "PubMed", "id": "15623534", "url": "https://pubmed.ncbi.nlm.nih.gov/15623534" }, { "database": "PubMed", "id": "15764700", "url": "https://pubmed.ncbi.nlm.nih.gov/15764700" }, { "database": "PubMed", "id": "16038803", "url": "https://pubmed.ncbi.nlm.nih.gov/16038803" }, { "database": "PubMed", "id": "16081816", "url": "https://pubmed.ncbi.nlm.nih.gov/16081816" }, { "database": "PubMed", "id": "16467851", "url": "https://pubmed.ncbi.nlm.nih.gov/16467851" }, { "database": "PubMed", "id": "16525023", "url": "https://pubmed.ncbi.nlm.nih.gov/16525023" }, { "database": "PubMed", "id": "17116690", "url": "https://pubmed.ncbi.nlm.nih.gov/17116690" }, { "database": "PubMed", "id": "17148460", "url": "https://pubmed.ncbi.nlm.nih.gov/17148460" }, { "database": "PubMed", "id": "17220479", "url": "https://pubmed.ncbi.nlm.nih.gov/17220479" }, { "database": "PubMed", "id": "19179337", "url": "https://pubmed.ncbi.nlm.nih.gov/19179337" }, { "database": "PubMed", "id": "21760611", "url": "https://pubmed.ncbi.nlm.nih.gov/21760611" }, { "database": "PubMed", "id": "22649724", "url": "https://pubmed.ncbi.nlm.nih.gov/22649724" }, { "database": "PubMed", "id": "22665519", "url": "https://pubmed.ncbi.nlm.nih.gov/22665519" }, { "database": "PubMed", "id": "22745786", "url": "https://pubmed.ncbi.nlm.nih.gov/22745786" }, { "database": "PubMed", "id": "23028325", "url": "https://pubmed.ncbi.nlm.nih.gov/23028325" }, { "database": "PubMed", "id": "23063561", "url": "https://pubmed.ncbi.nlm.nih.gov/23063561" }, { "database": "PubMed", "id": "23613900", "url": "https://pubmed.ncbi.nlm.nih.gov/23613900" }, { "database": "PubMed", "id": "23629676", "url": "https://pubmed.ncbi.nlm.nih.gov/23629676" }, { "database": "PubMed", "id": "24066087", "url": "https://pubmed.ncbi.nlm.nih.gov/24066087" }, { "database": "PubMed", "id": "24205378", "url": "https://pubmed.ncbi.nlm.nih.gov/24205378" }, { "database": "PubMed", "id": "25140833", "url": "https://pubmed.ncbi.nlm.nih.gov/25140833" }, { "database": "PubMed", "id": "25252913", "url": "https://pubmed.ncbi.nlm.nih.gov/25252913" }, { "database": "PubMed", "id": "25717186", "url": "https://pubmed.ncbi.nlm.nih.gov/25717186" }, { "database": "PubMed", "id": "25734483", "url": "https://pubmed.ncbi.nlm.nih.gov/25734483" }, { "database": "PubMed", "id": "25870599", "url": "https://pubmed.ncbi.nlm.nih.gov/25870599" }, { "database": "PubMed", "id": "25916191", "url": "https://pubmed.ncbi.nlm.nih.gov/25916191" }, { "database": "PubMed", "id": "26295810", "url": "https://pubmed.ncbi.nlm.nih.gov/26295810" }, { "database": "PubMed", "id": "27764189", "url": "https://pubmed.ncbi.nlm.nih.gov/27764189" }, { "database": "PubMed", "id": "27995987", "url": "https://pubmed.ncbi.nlm.nih.gov/27995987" }, { "database": "PubMed", "id": "28798148", "url": "https://pubmed.ncbi.nlm.nih.gov/28798148" }, { "database": "PubMed", "id": "28978037", "url": "https://pubmed.ncbi.nlm.nih.gov/28978037" }, { "database": "PubMed", "id": "29066806", "url": "https://pubmed.ncbi.nlm.nih.gov/29066806" }, { "database": "PubMed", "id": "29743977", "url": "https://pubmed.ncbi.nlm.nih.gov/29743977" }, { "database": "PubMed", "id": "29972810", "url": "https://pubmed.ncbi.nlm.nih.gov/29972810" }, { "database": "PubMed", "id": "30873169", "url": "https://pubmed.ncbi.nlm.nih.gov/30873169" }, { "database": "PubMed", "id": "35367415", "url": "https://pubmed.ncbi.nlm.nih.gov/35367415" }, { "database": "PubMed", "id": "9716455", "url": "https://pubmed.ncbi.nlm.nih.gov/9716455" }, { "database": "PubMed", "id": "15215251", "url": "https://pubmed.ncbi.nlm.nih.gov/15215251" }, { "database": "PubMed", "id": "19690332", "url": "https://pubmed.ncbi.nlm.nih.gov/19690332" }, { "database": "PubMed", "id": "11564877", "url": "https://pubmed.ncbi.nlm.nih.gov/11564877" } ], "site_lbl": "Tyr783", "uniprot_canonical_ac": "P19174-1" } ], "record_id": "pubmed.22665519", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Insights into the suppressor of T-cell receptor (TCR) signaling-1 (Sts-1)-mediated regulation of TCR signaling through the use of novel substrate-trapping Sts-1 phosphatase variants.", "journal": "The FEBS journal", "date": "2014-02", "authors": "Luis Boris S, Carpino Nick", "reference": { "type": "PubMed", "id": "24256567", "url": "https://pubmed.ncbi.nlm.nih.gov/24256567" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P43403-1", "protein_name": "Tyrosine-protein kinase ZAP-70", "gene_name": "ZAP70", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P43403", "url": "https://www.uniprot.org/uniprotkb/P43403" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 319, "end_pos": 319, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "P43403", "url": "https://www.uniprot.org/uniprotkb/P43403" }, { "database": "PubMed", "id": "10037717", "url": "https://pubmed.ncbi.nlm.nih.gov/10037717" }, { "database": "IntAct", "id": "P43403", "url": "https://www.ebi.ac.uk/intact/interactors/id:P43403*" }, { "database": "iPTMnet", "id": "P43403", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43403" }, { "database": "PubMed", "id": "10318843", "url": "https://pubmed.ncbi.nlm.nih.gov/10318843" }, { "database": "PubMed", "id": "24256567", "url": "https://pubmed.ncbi.nlm.nih.gov/24256567" }, { "database": "PubMed", "id": "10202147", "url": "https://pubmed.ncbi.nlm.nih.gov/10202147" }, { "database": "PubMed", "id": "11514606", "url": "https://pubmed.ncbi.nlm.nih.gov/11514606" }, { "database": "PubMed", "id": "11970985", "url": "https://pubmed.ncbi.nlm.nih.gov/11970985" }, { "database": "PubMed", "id": "15337788", "url": "https://pubmed.ncbi.nlm.nih.gov/15337788" }, { "database": "PubMed", "id": "15996927", "url": "https://pubmed.ncbi.nlm.nih.gov/15996927" }, { "database": "PubMed", "id": "17250586", "url": "https://pubmed.ncbi.nlm.nih.gov/17250586" }, { "database": "PubMed", "id": "17942891", "url": "https://pubmed.ncbi.nlm.nih.gov/17942891" }, { "database": "PubMed", "id": "17960665", "url": "https://pubmed.ncbi.nlm.nih.gov/17960665" }, { "database": "PubMed", "id": "18378687", "url": "https://pubmed.ncbi.nlm.nih.gov/18378687" }, { "database": "PubMed", "id": "20682913", "url": "https://pubmed.ncbi.nlm.nih.gov/20682913" }, { "database": "PubMed", "id": "21103055", "url": "https://pubmed.ncbi.nlm.nih.gov/21103055" }, { "database": "PubMed", "id": "22665519", "url": "https://pubmed.ncbi.nlm.nih.gov/22665519" }, { "database": "PubMed", "id": "23758320", "url": "https://pubmed.ncbi.nlm.nih.gov/23758320" }, { "database": "PubMed", "id": "26783323", "url": "https://pubmed.ncbi.nlm.nih.gov/26783323" }, { "database": "PubMed", "id": "27210755", "url": "https://pubmed.ncbi.nlm.nih.gov/27210755" }, { "database": "PubMed", "id": "29456532", "url": "https://pubmed.ncbi.nlm.nih.gov/29456532" }, { "database": "PubMed", "id": "29915297", "url": "https://pubmed.ncbi.nlm.nih.gov/29915297" }, { "database": "PubMed", "id": "30356330", "url": "https://pubmed.ncbi.nlm.nih.gov/30356330" }, { "database": "PubMed", "id": "32974219", "url": "https://pubmed.ncbi.nlm.nih.gov/32974219" }, { "database": "PubMed", "id": "33225946", "url": "https://pubmed.ncbi.nlm.nih.gov/33225946" }, { "database": "PubMed", "id": "33482200", "url": "https://pubmed.ncbi.nlm.nih.gov/33482200" }, { "database": "PubMed", "id": "33917227", "url": "https://pubmed.ncbi.nlm.nih.gov/33917227" }, { "database": "PubMed", "id": "36078131", "url": "https://pubmed.ncbi.nlm.nih.gov/36078131" } ], "site_lbl": "Tyr319", "uniprot_canonical_ac": "P43403-1" } ], "record_id": "pubmed.24256567", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Memory CD8+ T cells exhibit increased antigen threshold requirements for recall proliferation.", "journal": "The Journal of experimental medicine", "date": "2014", "authors": "Mehlhop-Williams ER, Bevan MJ", "reference": { "type": "PubMed", "id": "24493801", "url": "https://pubmed.ncbi.nlm.nih.gov/24493801" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P43403-1", "protein_name": "Tyrosine-protein kinase ZAP-70", "gene_name": "ZAP70", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P43403", "url": "https://www.uniprot.org/uniprotkb/P43403" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 493, "end_pos": 493, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "P43403", "url": "https://www.uniprot.org/uniprotkb/P43403" }, { "database": "PubMed", "id": "7781602", "url": "https://pubmed.ncbi.nlm.nih.gov/7781602" }, { "database": "PRO", "id": "P43403", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=P43403" }, { "database": "iPTMnet", "id": "P43403", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43403" }, { "database": "PubMed", "id": "11270871", "url": "https://pubmed.ncbi.nlm.nih.gov/11270871" }, { "database": "PubMed", "id": "11514606", "url": "https://pubmed.ncbi.nlm.nih.gov/11514606" }, { "database": "PubMed", "id": "11976341", "url": "https://pubmed.ncbi.nlm.nih.gov/11976341" }, { "database": "PubMed", "id": "18548611", "url": "https://pubmed.ncbi.nlm.nih.gov/18548611" }, { "database": "PubMed", "id": "21103055", "url": "https://pubmed.ncbi.nlm.nih.gov/21103055" }, { "database": "PubMed", "id": "21757751", "url": "https://pubmed.ncbi.nlm.nih.gov/21757751" }, { "database": "PubMed", "id": "23758320", "url": "https://pubmed.ncbi.nlm.nih.gov/23758320" }, { "database": "PubMed", "id": "23874979", "url": "https://pubmed.ncbi.nlm.nih.gov/23874979" }, { "database": "PubMed", "id": "24493801", "url": "https://pubmed.ncbi.nlm.nih.gov/24493801" }, { "database": "PubMed", "id": "26783323", "url": "https://pubmed.ncbi.nlm.nih.gov/26783323" }, { "database": "PubMed", "id": "27253329", "url": "https://pubmed.ncbi.nlm.nih.gov/27253329" }, { "database": "PubMed", "id": "30356330", "url": "https://pubmed.ncbi.nlm.nih.gov/30356330" }, { "database": "PubMed", "id": "33482200", "url": "https://pubmed.ncbi.nlm.nih.gov/33482200" }, { "database": "PubMed", "id": "7961936", "url": "https://pubmed.ncbi.nlm.nih.gov/7961936" }, { "database": "PubMed", "id": "9199177", "url": "https://pubmed.ncbi.nlm.nih.gov/9199177" } ], "site_lbl": "Tyr493", "uniprot_canonical_ac": "P43403-1" } ], "record_id": "pubmed.24493801", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The function of a novel immunophenotype candidate molecule PD-1 in chronic lymphocytic leukemia.", "journal": "Leukemia & lymphoma", "date": "2015", "authors": "Grzywnowicz M, Karabon L, Karczmarczyk A, Zajac M, Skorka K, Zaleska J, Wlasiuk P, Chocholska S, Tomczak W, Bojarska-Junak A, Dmoszynska A, Frydecka I, Giannopoulos K", "reference": { "type": "PubMed", "id": "25682964", "url": "https://pubmed.ncbi.nlm.nih.gov/25682964" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P43403-1", "protein_name": "Tyrosine-protein kinase ZAP-70", "gene_name": "ZAP70", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P43403", "url": "https://www.uniprot.org/uniprotkb/P43403" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 292, "end_pos": 292, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "P43403", "url": "https://www.uniprot.org/uniprotkb/P43403" }, { "database": "PubMed", "id": "19690332", "url": "https://pubmed.ncbi.nlm.nih.gov/19690332" }, { "database": "PubMed", "id": "8943331", "url": "https://pubmed.ncbi.nlm.nih.gov/8943331" }, { "database": "iPTMnet", "id": "P43403", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43403" }, { "database": "PubMed", "id": "10779765", "url": "https://pubmed.ncbi.nlm.nih.gov/10779765" }, { "database": "PubMed", "id": "18548611", "url": "https://pubmed.ncbi.nlm.nih.gov/18548611" }, { "database": "PubMed", "id": "23874979", "url": "https://pubmed.ncbi.nlm.nih.gov/23874979" }, { "database": "PubMed", "id": "25682964", "url": "https://pubmed.ncbi.nlm.nih.gov/25682964" }, { "database": "PubMed", "id": "7961936", "url": "https://pubmed.ncbi.nlm.nih.gov/7961936" }, { "database": "PubMed", "id": "9199177", "url": "https://pubmed.ncbi.nlm.nih.gov/9199177" }, { "database": "PubMed", "id": "9407100", "url": "https://pubmed.ncbi.nlm.nih.gov/9407100" } ], "site_lbl": "Tyr292", "uniprot_canonical_ac": "P43403-1" } ], "record_id": "pubmed.25682964", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The Size of Activating and Inhibitory Killer Ig-like Receptor Nanoclusters Is Controlled by the Transmembrane Sequence and Affects Signaling.", "journal": "Cell reports", "date": "2016", "authors": "Oszmiana A, Williamson DJ, Cordoba SP, Morgan DJ, Kennedy PR, Stacey K, Davis DM", "reference": { "type": "PubMed", "id": "27210755", "url": "https://pubmed.ncbi.nlm.nih.gov/27210755" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P43403-1", "protein_name": "Tyrosine-protein kinase ZAP-70", "gene_name": "ZAP70", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P43403", "url": "https://www.uniprot.org/uniprotkb/P43403" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 319, "end_pos": 319, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "P43403", "url": "https://www.uniprot.org/uniprotkb/P43403" }, { "database": "PubMed", "id": "10037717", "url": "https://pubmed.ncbi.nlm.nih.gov/10037717" }, { "database": "IntAct", "id": "P43403", "url": "https://www.ebi.ac.uk/intact/interactors/id:P43403*" }, { "database": "iPTMnet", "id": "P43403", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43403" }, { "database": "PubMed", "id": "10318843", "url": "https://pubmed.ncbi.nlm.nih.gov/10318843" }, { "database": "PubMed", "id": "24256567", "url": "https://pubmed.ncbi.nlm.nih.gov/24256567" }, { "database": "PubMed", "id": "10202147", "url": "https://pubmed.ncbi.nlm.nih.gov/10202147" }, { "database": "PubMed", "id": "11514606", "url": "https://pubmed.ncbi.nlm.nih.gov/11514606" }, { "database": "PubMed", "id": "11970985", "url": "https://pubmed.ncbi.nlm.nih.gov/11970985" }, { "database": "PubMed", "id": "15337788", "url": "https://pubmed.ncbi.nlm.nih.gov/15337788" }, { "database": "PubMed", "id": "15996927", "url": "https://pubmed.ncbi.nlm.nih.gov/15996927" }, { "database": "PubMed", "id": "17250586", "url": "https://pubmed.ncbi.nlm.nih.gov/17250586" }, { "database": "PubMed", "id": "17942891", "url": "https://pubmed.ncbi.nlm.nih.gov/17942891" }, { "database": "PubMed", "id": "17960665", "url": "https://pubmed.ncbi.nlm.nih.gov/17960665" }, { "database": "PubMed", "id": "18378687", "url": "https://pubmed.ncbi.nlm.nih.gov/18378687" }, { "database": "PubMed", "id": "20682913", "url": "https://pubmed.ncbi.nlm.nih.gov/20682913" }, { "database": "PubMed", "id": "21103055", "url": "https://pubmed.ncbi.nlm.nih.gov/21103055" }, { "database": "PubMed", "id": "22665519", "url": "https://pubmed.ncbi.nlm.nih.gov/22665519" }, { "database": "PubMed", "id": "23758320", "url": "https://pubmed.ncbi.nlm.nih.gov/23758320" }, { "database": "PubMed", "id": "26783323", "url": "https://pubmed.ncbi.nlm.nih.gov/26783323" }, { "database": "PubMed", "id": "27210755", "url": "https://pubmed.ncbi.nlm.nih.gov/27210755" }, { "database": "PubMed", "id": "29456532", "url": "https://pubmed.ncbi.nlm.nih.gov/29456532" }, { "database": "PubMed", "id": "29915297", "url": "https://pubmed.ncbi.nlm.nih.gov/29915297" }, { "database": "PubMed", "id": "30356330", "url": "https://pubmed.ncbi.nlm.nih.gov/30356330" }, { "database": "PubMed", "id": "32974219", "url": "https://pubmed.ncbi.nlm.nih.gov/32974219" }, { "database": "PubMed", "id": "33225946", "url": "https://pubmed.ncbi.nlm.nih.gov/33225946" }, { "database": "PubMed", "id": "33482200", "url": "https://pubmed.ncbi.nlm.nih.gov/33482200" }, { "database": "PubMed", "id": "33917227", "url": "https://pubmed.ncbi.nlm.nih.gov/33917227" }, { "database": "PubMed", "id": "36078131", "url": "https://pubmed.ncbi.nlm.nih.gov/36078131" } ], "site_lbl": "Tyr319", "uniprot_canonical_ac": "P43403-1" } ], "record_id": "pubmed.27210755", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Non-degradative Ubiquitination of Protein Kinases.", "journal": "PLoS computational biology", "date": "2016", "authors": "Ball KA, Johnson JR, Lewinski MK, Guatelli J, Verschueren E, Krogan NJ, Jacobson MP", "reference": { "type": "PubMed", "id": "27253329", "url": "https://pubmed.ncbi.nlm.nih.gov/27253329" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P43403-1", "protein_name": "Tyrosine-protein kinase ZAP-70", "gene_name": "ZAP70", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P43403", "url": "https://www.uniprot.org/uniprotkb/P43403" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 493, "end_pos": 493, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "P43403", "url": "https://www.uniprot.org/uniprotkb/P43403" }, { "database": "PubMed", "id": "7781602", "url": "https://pubmed.ncbi.nlm.nih.gov/7781602" }, { "database": "PRO", "id": "P43403", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=P43403" }, { "database": "iPTMnet", "id": "P43403", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43403" }, { "database": "PubMed", "id": "11270871", "url": "https://pubmed.ncbi.nlm.nih.gov/11270871" }, { "database": "PubMed", "id": "11514606", "url": "https://pubmed.ncbi.nlm.nih.gov/11514606" }, { "database": "PubMed", "id": "11976341", "url": "https://pubmed.ncbi.nlm.nih.gov/11976341" }, { "database": "PubMed", "id": "18548611", "url": "https://pubmed.ncbi.nlm.nih.gov/18548611" }, { "database": "PubMed", "id": "21103055", "url": "https://pubmed.ncbi.nlm.nih.gov/21103055" }, { "database": "PubMed", "id": "21757751", "url": "https://pubmed.ncbi.nlm.nih.gov/21757751" }, { "database": "PubMed", "id": "23758320", "url": "https://pubmed.ncbi.nlm.nih.gov/23758320" }, { "database": "PubMed", "id": "23874979", "url": "https://pubmed.ncbi.nlm.nih.gov/23874979" }, { "database": "PubMed", "id": "24493801", "url": "https://pubmed.ncbi.nlm.nih.gov/24493801" }, { "database": "PubMed", "id": "26783323", "url": "https://pubmed.ncbi.nlm.nih.gov/26783323" }, { "database": "PubMed", "id": "27253329", "url": "https://pubmed.ncbi.nlm.nih.gov/27253329" }, { "database": "PubMed", "id": "30356330", "url": "https://pubmed.ncbi.nlm.nih.gov/30356330" }, { "database": "PubMed", "id": "33482200", "url": "https://pubmed.ncbi.nlm.nih.gov/33482200" }, { "database": "PubMed", "id": "7961936", "url": "https://pubmed.ncbi.nlm.nih.gov/7961936" }, { "database": "PubMed", "id": "9199177", "url": "https://pubmed.ncbi.nlm.nih.gov/9199177" } ], "site_lbl": "Tyr493", "uniprot_canonical_ac": "P43403-1" } ], "record_id": "pubmed.27253329", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Intensity and duration of TCR signaling is limited by p38 phosphorylation of ZAP-70(T293) and destabilization of the signalosome.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2018", "authors": "Giardino Torchia ML, Dutta D, Mittelstadt PR, Guha J, Gaida MM, Fish K, Barr VA, Akpan IO, Samelson LE, Tagad HD, Debnath S, Miller Jenkins LM, Appella E, Ashwell JD", "reference": { "type": "PubMed", "id": "29440413", "url": "https://pubmed.ncbi.nlm.nih.gov/29440413" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P43403-1", "protein_name": "Tyrosine-protein kinase ZAP-70", "gene_name": "ZAP70", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P43403", "url": "https://www.uniprot.org/uniprotkb/P43403" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 293, "end_pos": 293, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P43403", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43403" }, { "database": "PubMed", "id": "15144186", "url": "https://pubmed.ncbi.nlm.nih.gov/15144186" }, { "database": "PubMed", "id": "29440413", "url": "https://pubmed.ncbi.nlm.nih.gov/29440413" } ], "site_lbl": "Thr293", "uniprot_canonical_ac": "P43403-1" } ], "record_id": "pubmed.29440413", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Lck promotes Zap70-dependent LAT phosphorylation by bridging Zap70 to LAT.", "journal": "Nature immunology", "date": "2018", "authors": "Lo WL, Shah NH, Ahsan N, Horkova V, Stepanek O, Salomon AR, Kuriyan J, Weiss A", "reference": { "type": "PubMed", "id": "29915297", "url": "https://pubmed.ncbi.nlm.nih.gov/29915297" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P43403-1", "protein_name": "Tyrosine-protein kinase ZAP-70", "gene_name": "ZAP70", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P43403", "url": "https://www.uniprot.org/uniprotkb/P43403" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 319, "end_pos": 319, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "P43403", "url": "https://www.uniprot.org/uniprotkb/P43403" }, { "database": "PubMed", "id": "10037717", "url": "https://pubmed.ncbi.nlm.nih.gov/10037717" }, { "database": "IntAct", "id": "P43403", "url": "https://www.ebi.ac.uk/intact/interactors/id:P43403*" }, { "database": "iPTMnet", "id": "P43403", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43403" }, { "database": "PubMed", "id": "10318843", "url": "https://pubmed.ncbi.nlm.nih.gov/10318843" }, { "database": "PubMed", "id": "24256567", "url": "https://pubmed.ncbi.nlm.nih.gov/24256567" }, { "database": "PubMed", "id": "10202147", "url": "https://pubmed.ncbi.nlm.nih.gov/10202147" }, { "database": "PubMed", "id": "11514606", "url": "https://pubmed.ncbi.nlm.nih.gov/11514606" }, { "database": "PubMed", "id": "11970985", "url": "https://pubmed.ncbi.nlm.nih.gov/11970985" }, { "database": "PubMed", "id": "15337788", "url": "https://pubmed.ncbi.nlm.nih.gov/15337788" }, { "database": "PubMed", "id": "15996927", "url": "https://pubmed.ncbi.nlm.nih.gov/15996927" }, { "database": "PubMed", "id": "17250586", "url": "https://pubmed.ncbi.nlm.nih.gov/17250586" }, { "database": "PubMed", "id": "17942891", "url": "https://pubmed.ncbi.nlm.nih.gov/17942891" }, { "database": "PubMed", "id": "17960665", "url": "https://pubmed.ncbi.nlm.nih.gov/17960665" }, { "database": "PubMed", "id": "18378687", "url": "https://pubmed.ncbi.nlm.nih.gov/18378687" }, { "database": "PubMed", "id": "20682913", "url": "https://pubmed.ncbi.nlm.nih.gov/20682913" }, { "database": "PubMed", "id": "21103055", "url": "https://pubmed.ncbi.nlm.nih.gov/21103055" }, { "database": "PubMed", "id": "22665519", "url": "https://pubmed.ncbi.nlm.nih.gov/22665519" }, { "database": "PubMed", "id": "23758320", "url": "https://pubmed.ncbi.nlm.nih.gov/23758320" }, { "database": "PubMed", "id": "26783323", "url": "https://pubmed.ncbi.nlm.nih.gov/26783323" }, { "database": "PubMed", "id": "27210755", "url": "https://pubmed.ncbi.nlm.nih.gov/27210755" }, { "database": "PubMed", "id": "29456532", "url": "https://pubmed.ncbi.nlm.nih.gov/29456532" }, { "database": "PubMed", "id": "29915297", "url": "https://pubmed.ncbi.nlm.nih.gov/29915297" }, { "database": "PubMed", "id": "30356330", "url": "https://pubmed.ncbi.nlm.nih.gov/30356330" }, { "database": "PubMed", "id": "32974219", "url": "https://pubmed.ncbi.nlm.nih.gov/32974219" }, { "database": "PubMed", "id": "33225946", "url": "https://pubmed.ncbi.nlm.nih.gov/33225946" }, { "database": "PubMed", "id": "33482200", "url": "https://pubmed.ncbi.nlm.nih.gov/33482200" }, { "database": "PubMed", "id": "33917227", "url": "https://pubmed.ncbi.nlm.nih.gov/33917227" }, { "database": "PubMed", "id": "36078131", "url": "https://pubmed.ncbi.nlm.nih.gov/36078131" } ], "site_lbl": "Tyr319", "uniprot_canonical_ac": "P43403-1" } ], "record_id": "pubmed.29915297", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "CCR7 Is Recruited to the Immunological Synapse, Acts as Co-stimulatory Molecule and Drives LFA-1 Clustering for Efficient T Cell Adhesion Through ZAP70.", "journal": "Frontiers in immunology", "date": "2018", "authors": "Laufer JM, Kindinger I, Artinger M, Pauli A, Legler DF", "reference": { "type": "PubMed", "id": "30692994", "url": "https://pubmed.ncbi.nlm.nih.gov/30692994" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P43403-1", "protein_name": "Tyrosine-protein kinase ZAP-70", "gene_name": "ZAP70", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32248-1", "protein_name": "C-C chemokine receptor type 7", "gene_name": "CCR7", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P43403", "url": "https://www.uniprot.org/uniprotkb/P43403" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 315, "end_pos": 315, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine; by LCK", "evidence": [ { "database": "UniProtKB", "id": "P43403", "url": "https://www.uniprot.org/uniprotkb/P43403" }, { "database": "IntAct", "id": "P43403", "url": "https://www.ebi.ac.uk/intact/interactors/id:P43403*" }, { "database": "iPTMnet", "id": "P43403", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43403" }, { "database": "PubMed", "id": "16339550", "url": "https://pubmed.ncbi.nlm.nih.gov/16339550" }, { "database": "PubMed", "id": "9151714", "url": "https://pubmed.ncbi.nlm.nih.gov/9151714" }, { "database": "PRO", "id": "P43403", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=P43403" }, { "database": "PubMed", "id": "10037717", "url": "https://pubmed.ncbi.nlm.nih.gov/10037717" }, { "database": "PubMed", "id": "11514606", "url": "https://pubmed.ncbi.nlm.nih.gov/11514606" }, { "database": "PubMed", "id": "18779373", "url": "https://pubmed.ncbi.nlm.nih.gov/18779373" }, { "database": "PubMed", "id": "21103055", "url": "https://pubmed.ncbi.nlm.nih.gov/21103055" }, { "database": "PubMed", "id": "30356330", "url": "https://pubmed.ncbi.nlm.nih.gov/30356330" }, { "database": "PubMed", "id": "30692994", "url": "https://pubmed.ncbi.nlm.nih.gov/30692994" }, { "database": "PubMed", "id": "32974219", "url": "https://pubmed.ncbi.nlm.nih.gov/32974219" } ], "site_lbl": "Tyr315", "uniprot_canonical_ac": "P43403-1" }, { "start_pos": 155, "end_pos": 155, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P32248", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P32248" }, { "database": "PubMed", "id": "30692994", "url": "https://pubmed.ncbi.nlm.nih.gov/30692994" } ], "site_lbl": "Tyr155", "uniprot_canonical_ac": "P32248-1" } ], "record_id": "pubmed.30692994", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "CD103 Promotes the Pro-inflammatory Response of Gastric Resident CD4+ T Cell in Helicobacter pylori-Positive Gastritis.", "journal": "Frontiers in cellular and infection microbiology", "date": "2020", "authors": "Chen Peiyu, Ming Siqi, Lao Juanfeng, Li Chunna, Wang Hongli, Xiong Liya, Zhang Shunxian, Liang Zibin, Niu Xiaoli, Deng Simei, Geng Lanlan, Wu Minhao, Wu Yongjian, Gong Sitang", "reference": { "type": "PubMed", "id": "32974219", "url": "https://pubmed.ncbi.nlm.nih.gov/32974219" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P43403-1", "protein_name": "Tyrosine-protein kinase ZAP-70", "gene_name": "ZAP70", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P43403", "url": "https://www.uniprot.org/uniprotkb/P43403" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 315, "end_pos": 315, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine; by LCK", "evidence": [ { "database": "UniProtKB", "id": "P43403", "url": "https://www.uniprot.org/uniprotkb/P43403" }, { "database": "IntAct", "id": "P43403", "url": "https://www.ebi.ac.uk/intact/interactors/id:P43403*" }, { "database": "iPTMnet", "id": "P43403", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43403" }, { "database": "PubMed", "id": "16339550", "url": "https://pubmed.ncbi.nlm.nih.gov/16339550" }, { "database": "PubMed", "id": "9151714", "url": "https://pubmed.ncbi.nlm.nih.gov/9151714" }, { "database": "PRO", "id": "P43403", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=P43403" }, { "database": "PubMed", "id": "10037717", "url": "https://pubmed.ncbi.nlm.nih.gov/10037717" }, { "database": "PubMed", "id": "11514606", "url": "https://pubmed.ncbi.nlm.nih.gov/11514606" }, { "database": "PubMed", "id": "18779373", "url": "https://pubmed.ncbi.nlm.nih.gov/18779373" }, { "database": "PubMed", "id": "21103055", "url": "https://pubmed.ncbi.nlm.nih.gov/21103055" }, { "database": "PubMed", "id": "30356330", "url": "https://pubmed.ncbi.nlm.nih.gov/30356330" }, { "database": "PubMed", "id": "30692994", "url": "https://pubmed.ncbi.nlm.nih.gov/30692994" }, { "database": "PubMed", "id": "32974219", "url": "https://pubmed.ncbi.nlm.nih.gov/32974219" } ], "site_lbl": "Tyr315", "uniprot_canonical_ac": "P43403-1" }, { "start_pos": 319, "end_pos": 319, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "P43403", "url": "https://www.uniprot.org/uniprotkb/P43403" }, { "database": "PubMed", "id": "10037717", "url": "https://pubmed.ncbi.nlm.nih.gov/10037717" }, { "database": "IntAct", "id": "P43403", "url": "https://www.ebi.ac.uk/intact/interactors/id:P43403*" }, { "database": "iPTMnet", "id": "P43403", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43403" }, { "database": "PubMed", "id": "10318843", "url": "https://pubmed.ncbi.nlm.nih.gov/10318843" }, { "database": "PubMed", "id": "24256567", "url": "https://pubmed.ncbi.nlm.nih.gov/24256567" }, { "database": "PubMed", "id": "10202147", "url": "https://pubmed.ncbi.nlm.nih.gov/10202147" }, { "database": "PubMed", "id": "11514606", "url": "https://pubmed.ncbi.nlm.nih.gov/11514606" }, { "database": "PubMed", "id": "11970985", "url": "https://pubmed.ncbi.nlm.nih.gov/11970985" }, { "database": "PubMed", "id": "15337788", "url": "https://pubmed.ncbi.nlm.nih.gov/15337788" }, { "database": "PubMed", "id": "15996927", "url": "https://pubmed.ncbi.nlm.nih.gov/15996927" }, { "database": "PubMed", "id": "17250586", "url": "https://pubmed.ncbi.nlm.nih.gov/17250586" }, { "database": "PubMed", "id": "17942891", "url": "https://pubmed.ncbi.nlm.nih.gov/17942891" }, { "database": "PubMed", "id": "17960665", "url": "https://pubmed.ncbi.nlm.nih.gov/17960665" }, { "database": "PubMed", "id": "18378687", "url": "https://pubmed.ncbi.nlm.nih.gov/18378687" }, { "database": "PubMed", "id": "20682913", "url": "https://pubmed.ncbi.nlm.nih.gov/20682913" }, { "database": "PubMed", "id": "21103055", "url": "https://pubmed.ncbi.nlm.nih.gov/21103055" }, { "database": "PubMed", "id": "22665519", "url": "https://pubmed.ncbi.nlm.nih.gov/22665519" }, { "database": "PubMed", "id": "23758320", "url": "https://pubmed.ncbi.nlm.nih.gov/23758320" }, { "database": "PubMed", "id": "26783323", "url": "https://pubmed.ncbi.nlm.nih.gov/26783323" }, { "database": "PubMed", "id": "27210755", "url": "https://pubmed.ncbi.nlm.nih.gov/27210755" }, { "database": "PubMed", "id": "29456532", "url": "https://pubmed.ncbi.nlm.nih.gov/29456532" }, { "database": "PubMed", "id": "29915297", "url": "https://pubmed.ncbi.nlm.nih.gov/29915297" }, { "database": "PubMed", "id": "30356330", "url": "https://pubmed.ncbi.nlm.nih.gov/30356330" }, { "database": "PubMed", "id": "32974219", "url": "https://pubmed.ncbi.nlm.nih.gov/32974219" }, { "database": "PubMed", "id": "33225946", "url": "https://pubmed.ncbi.nlm.nih.gov/33225946" }, { "database": "PubMed", "id": "33482200", "url": "https://pubmed.ncbi.nlm.nih.gov/33482200" }, { "database": "PubMed", "id": "33917227", "url": "https://pubmed.ncbi.nlm.nih.gov/33917227" }, { "database": "PubMed", "id": "36078131", "url": "https://pubmed.ncbi.nlm.nih.gov/36078131" } ], "site_lbl": "Tyr319", "uniprot_canonical_ac": "P43403-1" } ], "record_id": "pubmed.32974219", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Tyrosine 192 within the SH2 domain of the Src-protein tyrosine kinase p56Lck regulates T-cell activation independently of Lck/CD45 interactions.", "journal": "Cell communication and signaling : CCS", "date": "2020-11-23", "authors": "K\u00e4stle Matthias, Merten Camilla, Hartig Roland, Kaehne Thilo, Liaunardy-Jopeace Ardiyanto, Woessner Nadine M, Schamel Wolfgang W, James John, Minguet Susana, Simeoni Luca, Schraven Burkhart", "reference": { "type": "PubMed", "id": "33225946", "url": "https://pubmed.ncbi.nlm.nih.gov/33225946" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P43403-1", "protein_name": "Tyrosine-protein kinase ZAP-70", "gene_name": "ZAP70", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P43403", "url": "https://www.uniprot.org/uniprotkb/P43403" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 319, "end_pos": 319, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "P43403", "url": "https://www.uniprot.org/uniprotkb/P43403" }, { "database": "PubMed", "id": "10037717", "url": "https://pubmed.ncbi.nlm.nih.gov/10037717" }, { "database": "IntAct", "id": "P43403", "url": "https://www.ebi.ac.uk/intact/interactors/id:P43403*" }, { "database": "iPTMnet", "id": "P43403", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43403" }, { "database": "PubMed", "id": "10318843", "url": "https://pubmed.ncbi.nlm.nih.gov/10318843" }, { "database": "PubMed", "id": "24256567", "url": "https://pubmed.ncbi.nlm.nih.gov/24256567" }, { "database": "PubMed", "id": "10202147", "url": "https://pubmed.ncbi.nlm.nih.gov/10202147" }, { "database": "PubMed", "id": "11514606", "url": "https://pubmed.ncbi.nlm.nih.gov/11514606" }, { "database": "PubMed", "id": "11970985", "url": "https://pubmed.ncbi.nlm.nih.gov/11970985" }, { "database": "PubMed", "id": "15337788", "url": "https://pubmed.ncbi.nlm.nih.gov/15337788" }, { "database": "PubMed", "id": "15996927", "url": "https://pubmed.ncbi.nlm.nih.gov/15996927" }, { "database": "PubMed", "id": "17250586", "url": "https://pubmed.ncbi.nlm.nih.gov/17250586" }, { "database": "PubMed", "id": "17942891", "url": "https://pubmed.ncbi.nlm.nih.gov/17942891" }, { "database": "PubMed", "id": "17960665", "url": "https://pubmed.ncbi.nlm.nih.gov/17960665" }, { "database": "PubMed", "id": "18378687", "url": "https://pubmed.ncbi.nlm.nih.gov/18378687" }, { "database": "PubMed", "id": "20682913", "url": "https://pubmed.ncbi.nlm.nih.gov/20682913" }, { "database": "PubMed", "id": "21103055", "url": "https://pubmed.ncbi.nlm.nih.gov/21103055" }, { "database": "PubMed", "id": "22665519", "url": "https://pubmed.ncbi.nlm.nih.gov/22665519" }, { "database": "PubMed", "id": "23758320", "url": "https://pubmed.ncbi.nlm.nih.gov/23758320" }, { "database": "PubMed", "id": "26783323", "url": "https://pubmed.ncbi.nlm.nih.gov/26783323" }, { "database": "PubMed", "id": "27210755", "url": "https://pubmed.ncbi.nlm.nih.gov/27210755" }, { "database": "PubMed", "id": "29456532", "url": "https://pubmed.ncbi.nlm.nih.gov/29456532" }, { "database": "PubMed", "id": "29915297", "url": "https://pubmed.ncbi.nlm.nih.gov/29915297" }, { "database": "PubMed", "id": "30356330", "url": "https://pubmed.ncbi.nlm.nih.gov/30356330" }, { "database": "PubMed", "id": "32974219", "url": "https://pubmed.ncbi.nlm.nih.gov/32974219" }, { "database": "PubMed", "id": "33225946", "url": "https://pubmed.ncbi.nlm.nih.gov/33225946" }, { "database": "PubMed", "id": "33482200", "url": "https://pubmed.ncbi.nlm.nih.gov/33482200" }, { "database": "PubMed", "id": "33917227", "url": "https://pubmed.ncbi.nlm.nih.gov/33917227" }, { "database": "PubMed", "id": "36078131", "url": "https://pubmed.ncbi.nlm.nih.gov/36078131" } ], "site_lbl": "Tyr319", "uniprot_canonical_ac": "P43403-1" } ], "record_id": "pubmed.33225946", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "T cell receptor-dependent S-acylation of ZAP-70 controls activation of T cells.", "journal": "The Journal of biological chemistry", "date": "2021", "authors": "Tewari Ritika, Shayahati Bieerkehazhi, Fan Ying, Akimzhanov Askar M", "reference": { "type": "PubMed", "id": "33482200", "url": "https://pubmed.ncbi.nlm.nih.gov/33482200" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P43403-1", "protein_name": "Tyrosine-protein kinase ZAP-70", "gene_name": "ZAP70", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P43403", "url": "https://www.uniprot.org/uniprotkb/P43403" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 319, "end_pos": 319, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "P43403", "url": "https://www.uniprot.org/uniprotkb/P43403" }, { "database": "PubMed", "id": "10037717", "url": "https://pubmed.ncbi.nlm.nih.gov/10037717" }, { "database": "IntAct", "id": "P43403", "url": "https://www.ebi.ac.uk/intact/interactors/id:P43403*" }, { "database": "iPTMnet", "id": "P43403", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43403" }, { "database": "PubMed", "id": "10318843", "url": "https://pubmed.ncbi.nlm.nih.gov/10318843" }, { "database": "PubMed", "id": "24256567", "url": "https://pubmed.ncbi.nlm.nih.gov/24256567" }, { "database": "PubMed", "id": "10202147", "url": "https://pubmed.ncbi.nlm.nih.gov/10202147" }, { "database": "PubMed", "id": "11514606", "url": "https://pubmed.ncbi.nlm.nih.gov/11514606" }, { "database": "PubMed", "id": "11970985", "url": "https://pubmed.ncbi.nlm.nih.gov/11970985" }, { "database": "PubMed", "id": "15337788", "url": "https://pubmed.ncbi.nlm.nih.gov/15337788" }, { "database": "PubMed", "id": "15996927", "url": "https://pubmed.ncbi.nlm.nih.gov/15996927" }, { "database": "PubMed", "id": "17250586", "url": "https://pubmed.ncbi.nlm.nih.gov/17250586" }, { "database": "PubMed", "id": "17942891", "url": "https://pubmed.ncbi.nlm.nih.gov/17942891" }, { "database": "PubMed", "id": "17960665", "url": "https://pubmed.ncbi.nlm.nih.gov/17960665" }, { "database": "PubMed", "id": "18378687", "url": "https://pubmed.ncbi.nlm.nih.gov/18378687" }, { "database": "PubMed", "id": "20682913", "url": "https://pubmed.ncbi.nlm.nih.gov/20682913" }, { "database": "PubMed", "id": "21103055", "url": "https://pubmed.ncbi.nlm.nih.gov/21103055" }, { "database": "PubMed", "id": "22665519", "url": "https://pubmed.ncbi.nlm.nih.gov/22665519" }, { "database": "PubMed", "id": "23758320", "url": "https://pubmed.ncbi.nlm.nih.gov/23758320" }, { "database": "PubMed", "id": "26783323", "url": "https://pubmed.ncbi.nlm.nih.gov/26783323" }, { "database": "PubMed", "id": "27210755", "url": "https://pubmed.ncbi.nlm.nih.gov/27210755" }, { "database": "PubMed", "id": "29456532", "url": "https://pubmed.ncbi.nlm.nih.gov/29456532" }, { "database": "PubMed", "id": "29915297", "url": "https://pubmed.ncbi.nlm.nih.gov/29915297" }, { "database": "PubMed", "id": "30356330", "url": "https://pubmed.ncbi.nlm.nih.gov/30356330" }, { "database": "PubMed", "id": "32974219", "url": "https://pubmed.ncbi.nlm.nih.gov/32974219" }, { "database": "PubMed", "id": "33225946", "url": "https://pubmed.ncbi.nlm.nih.gov/33225946" }, { "database": "PubMed", "id": "33482200", "url": "https://pubmed.ncbi.nlm.nih.gov/33482200" }, { "database": "PubMed", "id": "33917227", "url": "https://pubmed.ncbi.nlm.nih.gov/33917227" }, { "database": "PubMed", "id": "36078131", "url": "https://pubmed.ncbi.nlm.nih.gov/36078131" } ], "site_lbl": "Tyr319", "uniprot_canonical_ac": "P43403-1" }, { "start_pos": 493, "end_pos": 493, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "P43403", "url": "https://www.uniprot.org/uniprotkb/P43403" }, { "database": "PubMed", "id": "7781602", "url": "https://pubmed.ncbi.nlm.nih.gov/7781602" }, { "database": "PRO", "id": "P43403", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=P43403" }, { "database": "iPTMnet", "id": "P43403", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43403" }, { "database": "PubMed", "id": "11270871", "url": "https://pubmed.ncbi.nlm.nih.gov/11270871" }, { "database": "PubMed", "id": "11514606", "url": "https://pubmed.ncbi.nlm.nih.gov/11514606" }, { "database": "PubMed", "id": "11976341", "url": "https://pubmed.ncbi.nlm.nih.gov/11976341" }, { "database": "PubMed", "id": "18548611", "url": "https://pubmed.ncbi.nlm.nih.gov/18548611" }, { "database": "PubMed", "id": "21103055", "url": "https://pubmed.ncbi.nlm.nih.gov/21103055" }, { "database": "PubMed", "id": "21757751", "url": "https://pubmed.ncbi.nlm.nih.gov/21757751" }, { "database": "PubMed", "id": "23758320", "url": "https://pubmed.ncbi.nlm.nih.gov/23758320" }, { "database": "PubMed", "id": "23874979", "url": "https://pubmed.ncbi.nlm.nih.gov/23874979" }, { "database": "PubMed", "id": "24493801", "url": "https://pubmed.ncbi.nlm.nih.gov/24493801" }, { "database": "PubMed", "id": "26783323", "url": "https://pubmed.ncbi.nlm.nih.gov/26783323" }, { "database": "PubMed", "id": "27253329", "url": "https://pubmed.ncbi.nlm.nih.gov/27253329" }, { "database": "PubMed", "id": "30356330", "url": "https://pubmed.ncbi.nlm.nih.gov/30356330" }, { "database": "PubMed", "id": "33482200", "url": "https://pubmed.ncbi.nlm.nih.gov/33482200" }, { "database": "PubMed", "id": "7961936", "url": "https://pubmed.ncbi.nlm.nih.gov/7961936" }, { "database": "PubMed", "id": "9199177", "url": "https://pubmed.ncbi.nlm.nih.gov/9199177" } ], "site_lbl": "Tyr493", "uniprot_canonical_ac": "P43403-1" } ], "record_id": "pubmed.33482200", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Cooperative Interaction of Nck and Lck Orchestrates Optimal TCR Signaling.", "journal": "Cells", "date": "2021", "authors": "Hartl FA, Ngoenkam J, Beck-Garcia E, Cerqueira L, Wipa P, Paensuwan P, Suriyaphol P, Mishra P, Schraven B, Gunther S, Pongcharoen S, Schamel WWA, Minguet S", "reference": { "type": "PubMed", "id": "33917227", "url": "https://pubmed.ncbi.nlm.nih.gov/33917227" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P43403-1", "protein_name": "Tyrosine-protein kinase ZAP-70", "gene_name": "ZAP70", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P43403", "url": "https://www.uniprot.org/uniprotkb/P43403" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 319, "end_pos": 319, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "P43403", "url": "https://www.uniprot.org/uniprotkb/P43403" }, { "database": "PubMed", "id": "10037717", "url": "https://pubmed.ncbi.nlm.nih.gov/10037717" }, { "database": "IntAct", "id": "P43403", "url": "https://www.ebi.ac.uk/intact/interactors/id:P43403*" }, { "database": "iPTMnet", "id": "P43403", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P43403" }, { "database": "PubMed", "id": "10318843", "url": "https://pubmed.ncbi.nlm.nih.gov/10318843" }, { "database": "PubMed", "id": "24256567", "url": "https://pubmed.ncbi.nlm.nih.gov/24256567" }, { "database": "PubMed", "id": "10202147", "url": "https://pubmed.ncbi.nlm.nih.gov/10202147" }, { "database": "PubMed", "id": "11514606", "url": "https://pubmed.ncbi.nlm.nih.gov/11514606" }, { "database": "PubMed", "id": "11970985", "url": "https://pubmed.ncbi.nlm.nih.gov/11970985" }, { "database": "PubMed", "id": "15337788", "url": "https://pubmed.ncbi.nlm.nih.gov/15337788" }, { "database": "PubMed", "id": "15996927", "url": "https://pubmed.ncbi.nlm.nih.gov/15996927" }, { "database": "PubMed", "id": "17250586", "url": "https://pubmed.ncbi.nlm.nih.gov/17250586" }, { "database": "PubMed", "id": "17942891", "url": "https://pubmed.ncbi.nlm.nih.gov/17942891" }, { "database": "PubMed", "id": "17960665", "url": "https://pubmed.ncbi.nlm.nih.gov/17960665" }, { "database": "PubMed", "id": "18378687", "url": "https://pubmed.ncbi.nlm.nih.gov/18378687" }, { "database": "PubMed", "id": "20682913", "url": "https://pubmed.ncbi.nlm.nih.gov/20682913" }, { "database": "PubMed", "id": "21103055", "url": "https://pubmed.ncbi.nlm.nih.gov/21103055" }, { "database": "PubMed", "id": "22665519", "url": "https://pubmed.ncbi.nlm.nih.gov/22665519" }, { "database": "PubMed", "id": "23758320", "url": "https://pubmed.ncbi.nlm.nih.gov/23758320" }, { "database": "PubMed", "id": "26783323", "url": "https://pubmed.ncbi.nlm.nih.gov/26783323" }, { "database": "PubMed", "id": "27210755", "url": "https://pubmed.ncbi.nlm.nih.gov/27210755" }, { "database": "PubMed", "id": "29456532", "url": "https://pubmed.ncbi.nlm.nih.gov/29456532" }, { "database": "PubMed", "id": "29915297", "url": "https://pubmed.ncbi.nlm.nih.gov/29915297" }, { "database": "PubMed", "id": "30356330", "url": "https://pubmed.ncbi.nlm.nih.gov/30356330" }, { "database": "PubMed", "id": "32974219", "url": "https://pubmed.ncbi.nlm.nih.gov/32974219" }, { "database": "PubMed", "id": "33225946", "url": "https://pubmed.ncbi.nlm.nih.gov/33225946" }, { "database": "PubMed", "id": "33482200", "url": "https://pubmed.ncbi.nlm.nih.gov/33482200" }, { "database": "PubMed", "id": "33917227", "url": "https://pubmed.ncbi.nlm.nih.gov/33917227" }, { "database": "PubMed", "id": "36078131", "url": "https://pubmed.ncbi.nlm.nih.gov/36078131" } ], "site_lbl": "Tyr319", "uniprot_canonical_ac": "P43403-1" } ], "record_id": "pubmed.33917227", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] } ]