[ { "title": "Remarkable evolutionary conservation of antiobesity ADIPOSE/WDTC1 homologs in animals and plants.", "journal": "Genetics", "date": "2017", "authors": "Ducos Eric, Verg\u00e8s Valentin, Dug\u00e9 de Bernonville Thomas, Blanc Nathalie, Giglioli-Guivarc'h Nathalie, Dutilleul Christelle", "reference": { "type": "PubMed", "id": "28663238", "url": "https://pubmed.ncbi.nlm.nih.gov/28663238" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8H0W2-1", "protein_name": "Histone deacetylase 9", "gene_name": "HDA9", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q94BQ3-1", "protein_name": "Protein ALTERED SEED GERMINATION 2", "gene_name": "ASG2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8H0W2", "url": "https://www.uniprot.org/uniprotkb/Q8H0W2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": 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[] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Bridging the gap between plant and mammalian polyamine catabolism: a novel peroxisomal polyamine oxidase responsible for a full back-conversion pathway in Arabidopsis thaliana.", "journal": "Plant Physiol.", "date": "2008", "authors": "Moschou Panagiotis N, Sanmartin Maite, Andriopoulou Athina H, Rojo Enrique, Sanchez-Serrano Jose J, Roubelakis-Angelakis Kalliopi A", "reference": { "type": "PubMed", "id": "18583528", "url": "https://pubmed.ncbi.nlm.nih.gov/18583528" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8H191-1", "protein_name": "Probable polyamine oxidase 4", "gene_name": "PAO4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LYT1-1", "protein_name": "Polyamine oxidase 3", "gene_name": "PAO3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SKX5-1", "protein_name": "Polyamine oxidase 2", "gene_name": "PAO2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SU79-1", "protein_name": "Probable polyamine oxidase 5", "gene_name": "PAO5", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": 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"count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A putative peroxisomal polyamine oxidase, AtPAO4, is involved in polyamine catabolism in Arabidopsis thaliana.", "journal": "Plant & cell physiology", "date": "2008-09", "authors": "Kamada-Nobusada Tomoe, Hayashi Makoto, Fukazawa Mitsue, Sakakibara Hitoshi, Nishimura Mikio", "reference": { "type": "PubMed", "id": "18703589", "url": "https://pubmed.ncbi.nlm.nih.gov/18703589" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8H191-1", "protein_name": "Probable polyamine oxidase 4", "gene_name": "PAO4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LYT1-1", "protein_name": "Polyamine oxidase 3", "gene_name": "PAO3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SKX5-1", "protein_name": "Polyamine oxidase 2", "gene_name": "PAO2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": 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"Characterization of five polyamine oxidase isoforms in Arabidopsis thaliana.", "journal": "Plant cell reports", "date": "2010-09", "authors": "Takahashi Yoshihiro, Cong Runzi, Sagor G H M, Niitsu Masaru, Berberich Thomas, Kusano Tomonobu", "reference": { "type": "PubMed", "id": "20532512", "url": "https://pubmed.ncbi.nlm.nih.gov/20532512" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8H191-1", "protein_name": "Probable polyamine oxidase 4", "gene_name": "PAO4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FNA2-1", "protein_name": "Polyamine oxidase 1", "gene_name": "PAO1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LYT1-1", "protein_name": "Polyamine oxidase 3", "gene_name": "PAO3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SKX5-1", "protein_name": "Polyamine oxidase 2", "gene_name": "PAO2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8H191", "url": "https://www.uniprot.org/uniprotkb/Q8H191" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.20532512", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": 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[] } ] }, { "title": "Functional diversity inside the Arabidopsis polyamine oxidase gene family.", "journal": "Journal of experimental botany", "date": "2011-01", "authors": "Fincato Paola, Moschou Panagiotis N, Spedaletti Valentina, Tavazza Raffaela, Angelini Riccardo, Federico Rodolfo, Roubelakis-Angelakis Kalliopi A, Tavladoraki Paraskevi", "reference": { "type": "PubMed", "id": "21081665", "url": "https://pubmed.ncbi.nlm.nih.gov/21081665" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8H191-1", "protein_name": "Probable polyamine oxidase 4", "gene_name": "PAO4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FNA2-1", "protein_name": "Polyamine oxidase 1", "gene_name": "PAO1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LYT1-1", "protein_name": "Polyamine oxidase 3", "gene_name": "PAO3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SKX5-1", "protein_name": "Polyamine oxidase 2", "gene_name": "PAO2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8H191", "url": "https://www.uniprot.org/uniprotkb/Q8H191" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.21081665", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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"count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Global Metabolic Profiling of Arabidopsis Polyamine Oxidase 4 (AtPAO4) Loss-of-Function Mutants Exhibiting Delayed Dark-Induced Senescence.", "journal": "Frontiers in plant science", "date": "2016", "authors": "Sequera-Mutiozabal Miren I, Erban Alexander, Kopka Joachim, Atanasov Kostadin E, Bastida Jaume, Fotopoulos Vasileios, Alc\u00e1zar Rub\u00e9n, Tiburcio Antonio F", "reference": { "type": "PubMed", "id": "26925084", "url": "https://pubmed.ncbi.nlm.nih.gov/26925084" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8H191-1", "protein_name": "Probable polyamine oxidase 4", "gene_name": "PAO4", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8H191", "url": "https://www.uniprot.org/uniprotkb/Q8H191" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.26925084", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Expression of an evolutionarily distinct novel BiP gene during the unfolded protein response in Arabidopsis thaliana.", "journal": "Gene", "date": "2003", "authors": "Noh Seung-Jae, Kwon Chang Seob, Oh Dong-Ha, Moon Jae Sun, Chung Won-Il", "reference": { "type": "PubMed", "id": "12853141", "url": "https://pubmed.ncbi.nlm.nih.gov/12853141" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8H1B3-1", "protein_name": "Heat shock 70 kDa protein BIP3", "gene_name": "BIP3", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8H1B3", "url": "https://www.uniprot.org/uniprotkb/Q8H1B3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.12853141", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ 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"count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Heat induces the splicing by IRE1 of a mRNA encoding a transcription factor involved in the unfolded protein response in Arabidopsis.", "journal": "Proc. Natl. Acad. Sci. U.S.A.", "date": "2011", "authors": "Deng Yan, Humbert Sabrina, Liu Jian-Xiang, Srivastava Renu, Rothstein Steven J, Howell Stephen H", "reference": { "type": "PubMed", "id": "21482766", "url": "https://pubmed.ncbi.nlm.nih.gov/21482766" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8H1B3-1", "protein_name": "Heat shock 70 kDa protein BIP3", "gene_name": "BIP3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q93VJ2-1", "protein_name": "Serine/threonine-protein kinase/endoribonuclease IRE1b", "gene_name": "IRE1-1; IRE1B", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9C5S2-1", "protein_name": "Serine/threonine-protein kinase/endoribonuclease IRE1a", "gene_name": "IRE1A", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9C7S0-1", "protein_name": "bZIP transcription factor 60", "gene_name": "BZIP60", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8H1B3", "url": "https://www.uniprot.org/uniprotkb/Q8H1B3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.21482766", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", 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"Multiple BiP genes of Arabidopsis thaliana are required for male gametogenesis and pollen competitiveness.", "journal": "Plant & cell physiology", "date": "2014-04", "authors": "Maruyama Daisuke, Sugiyama Tomoyuki, Endo Toshiya, Nishikawa Shuh-Ichi", "reference": { "type": "PubMed", "id": "24486762", "url": "https://pubmed.ncbi.nlm.nih.gov/24486762" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8H1B3-1", "protein_name": "Heat shock 70 kDa protein BIP3", "gene_name": "BIP3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LKR3-1", "protein_name": "Heat shock 70 kDa protein BIP1", "gene_name": "BIP1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q39043-1", "protein_name": "Heat shock 70 kDa protein BIP2", "gene_name": "BIP2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8H1B3", "url": 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with the BiPs via DnaJ Domain and Stimulates Their ATPase Enzyme Activities in Arabidopsis.", "journal": "PloS one", "date": "2015", "authors": "Ma Zhao-Xia, Leng Ya-Jun, Chen Guang-Xia, Zhou Peng-Min, Ye De, Chen Li-Qun", "reference": { "type": "PubMed", "id": "26186593", "url": "https://pubmed.ncbi.nlm.nih.gov/26186593" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8H1B3-1", "protein_name": "Heat shock 70 kDa protein BIP3", "gene_name": "BIP3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LKR3-1", "protein_name": "Heat shock 70 kDa protein BIP1", "gene_name": "BIP1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SR96-1", "protein_name": "DnaJ protein ERDJ3A", "gene_name": "ERDJ3A", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8H1B3", "url": "https://www.uniprot.org/uniprotkb/Q8H1B3" } ], "common_name": "Mouse-ear 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"journal": "Plant signaling & behavior", "date": "2015", "authors": "Maruyama Daisuke, Endo Toshiya, Nishikawa Shuh-ichi", "reference": { "type": "PubMed", "id": "26251880", "url": "https://pubmed.ncbi.nlm.nih.gov/26251880" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8H1B3-1", "protein_name": "Heat shock 70 kDa protein BIP3", "gene_name": "BIP3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LKR3-1", "protein_name": "Heat shock 70 kDa protein BIP1", "gene_name": "BIP1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q39043-1", "protein_name": "Heat shock 70 kDa protein BIP2", "gene_name": "BIP2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8H1B3", "url": "https://www.uniprot.org/uniprotkb/Q8H1B3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], 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Radykewicz Roman, Herz Markus, Schweizer G\u00fcnther, Hutzler Peter, Glawischnig Erich, Ruiz Ram\u00f3n A Torres", "reference": { "type": "PubMed", "id": "16107478", "url": "https://pubmed.ncbi.nlm.nih.gov/16107478" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8H1D3-1", "protein_name": "Phototropic-responsive NPH3 family protein NPY1", "gene_name": "NPY1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O64682-1", "protein_name": "Protein kinase PINOID", "gene_name": "PID", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8H1D3", "url": "https://www.uniprot.org/uniprotkb/Q8H1D3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.16107478", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], 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Yuan-Hsin, Chen Jian-Hao, Sun Hua-Chung, Yang Songguang, Li Chenlong, Wu Keqiang", "reference": { "type": "PubMed", "id": "33604650", "url": "https://pubmed.ncbi.nlm.nih.gov/33604650" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8H1S7-1", "protein_name": "Lysine-specific demethylase JMJ28", "gene_name": "JMJ28", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8H1S7", "url": "https://www.uniprot.org/uniprotkb/Q8H1S7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.33604650", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", 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Biol. Chem.", "date": "2012", "authors": "Roston Rebecca L, Gao Jinpeng, Murcha Monika W, Whelan James, Benning Christoph", "reference": { "type": "PubMed", "id": "22544736", "url": "https://pubmed.ncbi.nlm.nih.gov/22544736" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8L4R0-1", "protein_name": "Protein TRIGALACTOSYLDIACYLGLYCEROL 1, chloroplastic", "gene_name": "TGD1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9AT00-1", "protein_name": "Protein TRIGALACTOSYLDIACYLGLYCEROL 3, chloroplastic", "gene_name": "TGD3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LTR2-1", "protein_name": "Protein TRIGALACTOSYLDIACYLGLYCEROL 2, chloroplastic", "gene_name": "TGD2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8L4R0", "url": "https://www.uniprot.org/uniprotkb/Q8L4R0" } ], "common_name": "Mouse-ear cress", "glygen_name": 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"o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A CRM domain protein functions dually in group I and group II intron splicing in land plant chloroplasts.", "journal": "The Plant cell", "date": "2007-12", "authors": "Asakura Yukari, Barkan Alice", "reference": { "type": "PubMed", "id": "18065687", "url": "https://pubmed.ncbi.nlm.nih.gov/18065687" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8L7C2-1", "protein_name": "CRM-domain containing factor CFM2, chloroplastic", "gene_name": "CFM2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8L7C2", "url": "https://www.uniprot.org/uniprotkb/Q8L7C2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.18065687", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": 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Chem.", "date": "2010", "authors": "Tronconi Marcos A, Maurino Ver\u00f3nica G, Andreo Carlos S, Drincovich Mar\u00eda F", "reference": { "type": "PubMed", "id": "20133948", "url": "https://pubmed.ncbi.nlm.nih.gov/20133948" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8L7K9-1", "protein_name": "NAD-dependent malic enzyme 2, mitochondrial", "gene_name": "NAD-ME2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SIU0-1", "protein_name": "NAD-dependent malic enzyme 1, mitochondrial", "gene_name": "NAD-ME1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8L7K9", "url": "https://www.uniprot.org/uniprotkb/Q8L7K9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.20133948", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "NAD-malic enzymes of Arabidopsis thaliana display distinct kinetic mechanisms that support differences in physiological control.", "journal": "Biochem. 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Holroyd Geoff H, Spiegel Sarah, Panagopulos Michael, Gray Julie E, Hetherington Alistair M", "reference": { "type": "PubMed", "id": "18557834", "url": "https://pubmed.ncbi.nlm.nih.gov/18557834" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8L7L1-1", "protein_name": "Sphingosine kinase 1", "gene_name": "SPHK1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8L7L1", "url": "https://www.uniprot.org/uniprotkb/Q8L7L1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.18557834", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", 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