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], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The role of chromosomal HMGB proteins in plants.", "journal": "Biochim. Biophys. Acta", "date": "2010", "authors": "Pedersen Dorthe S, Grasser Klaus D", "reference": { "type": "PubMed", "id": "20123078", "url": "https://pubmed.ncbi.nlm.nih.gov/20123078" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8LDF9-1", "protein_name": "High mobility group B protein 7", "gene_name": "HMGB6; HMGB7", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O49596-1", "protein_name": "High mobility group B protein 2", "gene_name": "HMGB2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O49595-1", "protein_name": "High mobility group B protein 1", "gene_name": "HMGB1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O49597-1", "protein_name": "High mobility group B protein 5", "gene_name": "HMGB5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P93047-1", "protein_name": "High mobility group B protein 3", "gene_name": "HMGB3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q42344-1", "protein_name": "High mobility group B protein 4", "gene_name": "HMGB4", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8LDF9", "url": "https://www.uniprot.org/uniprotkb/Q8LDF9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.20123078", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Transcriptional regulation of NADP-dependent malate dehydrogenase: comparative genetics and identification of DNA-binding proteins.", "journal": "J. Mol. Evol.", "date": "2007", "authors": "Hameister Steffen, Becker Beril, Holtgrefe Simone, Strodtk\u00f6tter Inga, Linke Vera, Backhausen Jan E, Scheibe Renate", "reference": { "type": "PubMed", "id": "17925997", "url": "https://pubmed.ncbi.nlm.nih.gov/17925997" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8H1E2-1", "protein_name": "Malate dehydrogenase [NADP], chloroplastic", "gene_name": "NADP-MDH", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8H1E2", "url": "https://www.uniprot.org/uniprotkb/Q8H1E2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.17925997", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Multiple strategies to prevent oxidative stress in Arabidopsis plants lacking the malate valve enzyme NADP-malate dehydrogenase.", "journal": "J. Exp. Bot.", "date": "2012", "authors": "Hebbelmann Inga, Selinski Jennifer, Wehmeyer Corinna, Goss Tatjana, Voss Ingo, Mulo Paula, Kangasj\u00e4rvi Saijaliisa, Aro Eva-Mari, Oelze Marie-Luise, Dietz Karl-Josef, Nunes-Nesi Adriano, Do Phuc T, Fernie Alisdair R, Talla Sai K, Raghavendra Agepati S, Linke Vera, Scheibe Renate", "reference": { "type": "PubMed", "id": "22140244", "url": "https://pubmed.ncbi.nlm.nih.gov/22140244" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8H1E2-1", "protein_name": "Malate dehydrogenase [NADP], chloroplastic", "gene_name": "NADP-MDH", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8H1E2", "url": "https://www.uniprot.org/uniprotkb/Q8H1E2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.22140244", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Putative role of the malate valve enzyme NADP-malate dehydrogenase in H2O2 signalling in Arabidopsis.", "journal": "Philosophical transactions of the Royal Society of London. 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[] } ] }, { "title": "DOF transcription factor AtDof1.1 (OBP2) is part of a regulatory network controlling glucosinolate biosynthesis in Arabidopsis.", "journal": "The Plant journal : for cell and molecular biology", "date": "2006-07", "authors": "Skirycz Aleksandra, Reichelt Michael, Burow Meike, Birkemeyer Claudia, Rolcik Jakub, Kopka Joachim, Zanor Maria In\u00e8s, Gershenzon Jonathan, Strnad Miroslav, Szopa Jan, Mueller-Roeber Bernd, Witt Isabell", "reference": { "type": "PubMed", "id": "16740150", "url": "https://pubmed.ncbi.nlm.nih.gov/16740150" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8L9V6-1", "protein_name": "Dof zinc finger protein DOF1.1", "gene_name": "DOF1.1; OBP2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O65782-1", "protein_name": "Cytochrome P450 83B1", "gene_name": "CYP83B1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": 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"Mobile PEAR transcription factors integrate positional cues to prime cambial growth.", "journal": "Nature", "date": "2019-01", "authors": "Miyashima Shunsuke, Roszak Pawel, Sevilem Iris, Toyokura Koichi, Blob Bernhard, Heo Jung-Ok, Mellor Nathan, Help-Rinta-Rahko Hanna, Otero Sofia, Smet Wouter, Boekschoten Mark, Hooiveld Guido, Hashimoto Kayo, Smetana Ond\u0159ej, Siligato Riccardo, Wallner Eva-Sophie, M\u00e4h\u00f6nen Ari Pekka, Kondo Yuki, Melnyk Charles W, Greb Thomas, Nakajima Keiji, Sozzani Rosangela, Bishopp Anthony, De Rybel Bert, Helariutta Yk\u00e4", "reference": { "type": "PubMed", "id": "30626969", "url": "https://pubmed.ncbi.nlm.nih.gov/30626969" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8L9V6-1", "protein_name": "Dof zinc finger protein DOF1.1", "gene_name": "DOF1.1; OBP2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q84TE9-1", "protein_name": "Dof zinc finger protein DOF5.3", "gene_name": "DOF5.3", "tax_name": 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3'-repair enzyme from Arabidopsis.", "journal": "The Journal of biological chemistry", "date": "2002-06-28", "authors": "Petrucco Stefania, Volpi Giorgia, Bolchi Angelo, Rivetti Claudio, Ottonello Simone", "reference": { "type": "PubMed", "id": "11948185", "url": "https://pubmed.ncbi.nlm.nih.gov/11948185" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q84JE8-1", "protein_name": "Polynucleotide 3'-phosphatase ZDP", "gene_name": "ZDP", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4HPZ9-1", "protein_name": "DNA ligase 6", "gene_name": "LIG6", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84JE8", "url": "https://www.uniprot.org/uniprotkb/Q84JE8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.11948185", "abstract": "", "glycosylation": [], 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Biol. Chem.", "date": "2013", "authors": "Mart\u00ednez-Mac\u00edas Mar\u00eda Isabel, C\u00f3rdoba-Ca\u00f1ero Dolores, Ariza Rafael R, Rold\u00e1n-Arjona Teresa", "reference": { "type": "PubMed", "id": "23316050", "url": "https://pubmed.ncbi.nlm.nih.gov/23316050" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q84JE8-1", "protein_name": "Polynucleotide 3'-phosphatase ZDP", "gene_name": "ZDP", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q24JK4-1", "protein_name": "DNA-repair protein XRCC1", "gene_name": "XRCC1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SJQ6-1", "protein_name": "DNA glycosylase/AP lyase ROS1", "gene_name": "ROS1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84JE8", "url": "https://www.uniprot.org/uniprotkb/Q84JE8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": 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[] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Five Arabidopsis peroxin 11 homologs individually promote peroxisome elongation, duplication or aggregation.", "journal": "Journal of cell science", "date": "2006-05-01", "authors": "Lingard Matthew J, Trelease Richard N", "reference": { "type": "PubMed", "id": "16636080", "url": "https://pubmed.ncbi.nlm.nih.gov/16636080" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q84JW1-1", "protein_name": "Peroxisomal membrane protein 11E", "gene_name": "PEX11E", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O80845-1", "protein_name": "Peroxisomal membrane protein 11D", "gene_name": "PEX11D", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FZF1-1", "protein_name": "Peroxisomal membrane protein 11A", "gene_name": "PEX11A", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LQ73-1", "protein_name": "Peroxisomal membrane protein 11C", "gene_name": "PEX11C", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9STY0-1", "protein_name": "Peroxisomal membrane protein 11B", "gene_name": "PEX11B", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84JW1", "url": "https://www.uniprot.org/uniprotkb/Q84JW1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.16636080", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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"field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The PEROXIN11 protein family controls peroxisome proliferation in Arabidopsis.", "journal": "The Plant cell", "date": "2007-01", "authors": "Orth Travis, Reumann Sigrun, Zhang Xinchun, Fan Jilian, Wenzel Dirk, Quan Sheng, Hu Jianping", "reference": { "type": "PubMed", "id": "17220199", "url": "https://pubmed.ncbi.nlm.nih.gov/17220199" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q84JW1-1", "protein_name": "Peroxisomal membrane protein 11E", "gene_name": "PEX11E", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O80845-1", "protein_name": "Peroxisomal membrane protein 11D", "gene_name": "PEX11D", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FZF1-1", "protein_name": "Peroxisomal membrane protein 11A", "gene_name": "PEX11A", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LQ73-1", 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"table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Selection on rapidly evolving proteins in the Arabidopsis genome.", "journal": "Genetics", "date": "2003", "authors": "Barrier Marianne, Bustamante Carlos D, Yu Jiaye, Purugganan Michael D", "reference": { "type": "PubMed", "id": "12618409", "url": "https://pubmed.ncbi.nlm.nih.gov/12618409" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q84K00-1", "protein_name": "NAC domain-containing protein 78", "gene_name": "NAC078", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FRH7-1", "protein_name": "Tubby-like F-box protein 10", "gene_name": "TLP10; TULP10", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LRJ9-1", "protein_name": "Cysteine-rich repeat secretory protein 38", "gene_name": "CRRSP38", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84K00", "url": "https://www.uniprot.org/uniprotkb/Q84K00" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.12618409", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": 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"count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": 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"https://www.uniprot.org/uniprotkb/Q84K00" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.19887540", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": 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factor in the regulation of 20S and 26S proteasomes.", "journal": "Plant science : an international journal of experimental plant biology", "date": "2011-10", "authors": "Yabuta Yukinori, Osada Ryuji, Morishita Teruyuki, Nishizawa-Yokoi Ayako, Tamoi Masahiro, Maruta Takanori, Shigeoka Shigeru", "reference": { "type": "PubMed", "id": "21889048", "url": "https://pubmed.ncbi.nlm.nih.gov/21889048" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q84K00-1", "protein_name": "NAC domain-containing protein 78", "gene_name": "NAC078", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84K00", "url": "https://www.uniprot.org/uniprotkb/Q84K00" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.21889048", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], 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Cell", "date": "2003", "authors": "Brudler Ronald, Hitomi Kenichi, Daiyasu Hiromi, Toh Hiroyuki, Kucho Ken-ichi, Ishiura Masahiro, Kanehisa Minoru, Roberts Victoria A, Todo Takeshi, Tainer John A, Getzoff Elizabeth D", "reference": { "type": "PubMed", "id": "12535521", "url": "https://pubmed.ncbi.nlm.nih.gov/12535521" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q84KJ5-1", "protein_name": "Cryptochrome DASH, chloroplastic/mitochondrial", "gene_name": "CRYD", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84KJ5", "url": "https://www.uniprot.org/uniprotkb/Q84KJ5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.12535521", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": 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of the human Werner syndrome protein.", "journal": "The Journal of biological chemistry", "date": "2003-11-07", "authors": "Plchova Helena, Hartung Frank, Puchta Holger", "reference": { "type": "PubMed", "id": "12937173", "url": "https://pubmed.ncbi.nlm.nih.gov/12937173" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q84LH3-1", "protein_name": "3'-5' exonuclease", "gene_name": "WEX", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84LH3", "url": "https://www.uniprot.org/uniprotkb/Q84LH3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "mutagenesis": [ { "start_pos": 135, "end_pos": 135, "sequence_org": "E", "sequence_mut": "A", "comment": "Loss of exonucleolytic activity.", "evidence": [ { "database": "UniProtKB", "id": "Q84LH3", "url": "https://www.uniprot.org/uniprotkb/Q84LH3" 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[] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A conserved and species-specific functional interaction between the Werner syndrome-like exonuclease atWEX and the Ku heterodimer in Arabidopsis.", "journal": "Nucleic Acids Res.", "date": "2005", "authors": "Li Baomin, Conway Nathan, Navarro Sonia, Comai Luca, Comai Lucio", "reference": { "type": "PubMed", "id": "16396834", "url": "https://pubmed.ncbi.nlm.nih.gov/16396834" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q84LH3-1", "protein_name": "3'-5' exonuclease", "gene_name": "WEX", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FQ09-1", "protein_name": "ATP-dependent DNA helicase 2 subunit KU80", "gene_name": "KU80", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FQ08-1", "protein_name": "ATP-dependent DNA helicase 2 subunit KU70", "gene_name": "KU70", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84LH3", "url": "https://www.uniprot.org/uniprotkb/Q84LH3" } ], "common_name": "Mouse-ear cress", "glygen_name": 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"TOPP4 Regulates the Stability of PHYTOCHROME INTERACTING FACTOR5 during Photomorphogenesis in Arabidopsis.", "journal": "Plant physiology", "date": "2016-03", "authors": "Yue Jing, Qin Qianqian, Meng Siyuan, Jing Huiting, Gou Xiaoping, Li Jia, Hou Suiwen", "reference": { "type": "PubMed", "id": "26704640", "url": "https://pubmed.ncbi.nlm.nih.gov/26704640" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q84LH8-1", "protein_name": "Transcription factor PIF5", "gene_name": "PIF5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O80536-1", "protein_name": "Transcription factor PIF3", "gene_name": "PIF3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P48484-1", "protein_name": "Serine/threonine-protein phosphatase PP1 isozyme 4", "gene_name": "TOPP4", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84LH8", "url": 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[] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "An FMN hydrolase is fused to a riboflavin kinase homolog in plants.", "journal": "The Journal of 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Cell cycle regulation in plant development.", "journal": "Annu. Rev. Genet.", "date": "2006", "authors": "Inz\u00e9 Dirk, De Veylder Lieven", "reference": { "type": "PubMed", "id": "17094738", "url": "https://pubmed.ncbi.nlm.nih.gov/17094738" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q84TI6-1", "protein_name": "Cyclin-dependent kinase E-1", "gene_name": "CDKE-1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8W4P1-1", "protein_name": "Cyclin-dependent kinase C-2", "gene_name": "CDKC-2; CDKC2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P24100-1", "protein_name": "Cyclin-dependent kinase A-1", "gene_name": "CDKA-1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P25859-1", "protein_name": "Cyclin-dependent kinase B1-1", "gene_name": "CDKB1-1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8LF80-1", "protein_name": "Cyclin-dependent kinase B2-1", "gene_name": "CDKB2-1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8LG64-1", "protein_name": "Cyclin-dependent kinase B2-2", "gene_name": "CDKB2-2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9C9M7-1", "protein_name": "Cyclin-dependent kinase D-2", "gene_name": "CDKD-2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9C9U2-1", "protein_name": "Cyclin-dependent kinase D-1", "gene_name": "CDKD-1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LFT8-1", "protein_name": "Cyclin-dependent kinase C-1", "gene_name": "CDKC-1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LMT0-1", "protein_name": "Cyclin-dependent kinase D-3", "gene_name": "CDKD-3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q2V419-1", "protein_name": "Cyclin-dependent kinase B1-2", "gene_name": "CDKB1-2; CDKB1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84TI6", "url": "https://www.uniprot.org/uniprotkb/Q84TI6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.17094738", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 11 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The transcription corepressor LEUNIG interacts with the histone deacetylase HDA19 and mediator components MED14 (SWP) and CDK8 (HEN3) to repress transcription.", "journal": "Mol. Cell. Biol.", "date": "2007", "authors": "Gonzalez Deyarina, Bowen Adam J, Carroll Thomas S, Conlan R Steven", "reference": { "type": "PubMed", "id": "17526732", "url": "https://pubmed.ncbi.nlm.nih.gov/17526732" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q84TI6-1", "protein_name": "Cyclin-dependent kinase E-1", "gene_name": "CDKE-1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FUY2-1", "protein_name": "Transcriptional corepressor LEUNIG", "gene_name": "LUG", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O22446-1", "protein_name": "Histone deacetylase 19", "gene_name": "HD1; HDA19", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SR02-1", "protein_name": "Mediator of RNA polymerase II transcription subunit 14", "gene_name": "MED14", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84TI6", "url": "https://www.uniprot.org/uniprotkb/Q84TI6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.17526732", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The Arabidopsis HKT1 gene homolog mediates inward Na(+) currents in xenopus laevis oocytes and Na(+) uptake in Saccharomyces cerevisiae.", "journal": "Plant physiology", "date": "2000-04", "authors": "Uozumi N, Kim E J, Rubio F, Yamaguchi T, Muto S, Tsuboi A, Bakker E P, Nakamura T, Schroeder J I", "reference": { "type": "PubMed", "id": "10759522", "url": "https://pubmed.ncbi.nlm.nih.gov/10759522" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q84TI7-1", "protein_name": "Sodium transporter HKT1", "gene_name": "HKT1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84TI7", "url": "https://www.uniprot.org/uniprotkb/Q84TI7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.10759522", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": 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"field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Evidence in support of a four transmembrane-pore-transmembrane topology model for the Arabidopsis thaliana Na+/K+ translocating AtHKT1 protein, a member of the superfamily of K+ transporters.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2001-05-22", "authors": "Kato Y, Sakaguchi M, Mori Y, Saito K, Nakamura T, 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"n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "AtHKT1 is a salt tolerance determinant that controls Na(+) entry into plant roots.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2001-11-20", "authors": "Rus A, Yokoi S, Sharkhuu A, Reddy M, Lee B H, Matsumoto T K, Koiwa H, Zhu J K, Bressan R A, Hasegawa P M", "reference": { "type": "PubMed", "id": "11698666", "url": "https://pubmed.ncbi.nlm.nih.gov/11698666" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q84TI7-1", "protein_name": "Sodium transporter HKT1", "gene_name": "HKT1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84TI7", "url": "https://www.uniprot.org/uniprotkb/Q84TI7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": 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"o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Altered shoot/root Na+ distribution and bifurcating salt sensitivity in Arabidopsis by genetic disruption of the Na+ transporter AtHKT1.", "journal": "FEBS letters", "date": "2002-11-06", "authors": "M\u00e4ser Pascal, Eckelman Brendan, Vaidyanathan Rama, Horie Tomoaki, Fairbairn David J, Kubo Masahiro, Yamagami Mutsumi, Yamaguchi Katsushi, Nishimura Mikio, Uozumi Nobuyuki, Robertson Whitney, Sussman Michael R, Schroeder Julian I", "reference": { "type": "PubMed", "id": "12417304", "url": "https://pubmed.ncbi.nlm.nih.gov/12417304" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q84TI7-1", "protein_name": "Sodium transporter HKT1", "gene_name": "HKT1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84TI7", "url": "https://www.uniprot.org/uniprotkb/Q84TI7" } ], "common_name": "Mouse-ear 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"glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Functional analysis of AtHKT1 in Arabidopsis shows that Na(+) recirculation by the phloem is crucial for salt 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"n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "In planta mutagenesis of Src homology 3 domain-like fold of NdhS, a ferredoxin-binding subunit of the chloroplast NADH dehydrogenase-like complex in Arabidopsis: a conserved Arg-193 plays a critical role in ferredoxin binding.", "journal": "J. Biol. Chem.", "date": "2013", "authors": "Yamamoto Hiroshi, Shikanai Toshiharu", "reference": { "type": "PubMed", "id": "24225949", "url": "https://pubmed.ncbi.nlm.nih.gov/24225949" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q84VQ4-1", "protein_name": "NAD(P)H-quinone oxidoreductase subunit U, chloroplastic", "gene_name": "ndhU", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SMS0-1", "protein_name": "NAD(P)H-quinone oxidoreductase subunit T, chloroplastic", "gene_name": "ndhT", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9T0A4-1", "protein_name": "NAD(P)H-quinone oxidoreductase subunit S, chloroplastic", "gene_name": "ndhS", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84VQ4", "url": "https://www.uniprot.org/uniprotkb/Q84VQ4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": 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[] } ] }, { "title": "GLUCOSAMINE INOSITOLPHOSPHORYLCERAMIDE TRANSFERASE1 (GINT1) Is a GlcNAc-Containing Glycosylinositol Phosphorylceramide Glycosyltransferase.", "journal": "Plant physiology", "date": "2018-07", "authors": "Ishikawa Toshiki, Fang Lin, Rennie Emilie A, Sechet Julien, Yan Jingwei, Jing Beibei, Moore William, Cahoon Edgar B, Scheller Henrik V, Kawai-Yamada Maki, Mortimer Jenny C", "reference": { "type": "PubMed", "id": "29760197", "url": "https://pubmed.ncbi.nlm.nih.gov/29760197" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q84WB7-1", "protein_name": "Glucosamine inositolphosphorylceramide transferase 1", "gene_name": "GINT1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84WB7", "url": "https://www.uniprot.org/uniprotkb/Q84WB7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis 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Malcolm J, Swarup Ranjan", "reference": { "type": "PubMed", "id": "29651114", "url": "https://pubmed.ncbi.nlm.nih.gov/29651114" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q84WK0-1", "protein_name": "Transcription factor RSL2", "gene_name": "RSL2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8LEG1-1", "protein_name": "Transcription factor RSL3", "gene_name": "RSL4", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84WK0", "url": "https://www.uniprot.org/uniprotkb/Q84WK0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.29651114", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Arabidopsis JAZ proteins interact with and suppress RHD6 transcription factor to regulate jasmonate-stimulated root hair development.", "journal": "Plant Cell", "date": "2020", "authors": "Han Xiao, Zhang Minghui, Yang Milian, Hu Yanru", "reference": { "type": "PubMed", "id": "31988260", "url": "https://pubmed.ncbi.nlm.nih.gov/31988260" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q84WK0-1", "protein_name": 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"Chardon Fabien, Bedu Magali, Calenge Fanny, Klemens Patrick A W, Spinner Lara, Clement Gilles, Chietera Giorgiana, L\u00e9ran Sophie, Ferrand Marina, Lacombe Benoit, Loudet Olivier, Dinant Sylvie, Bellini Catherine, Neuhaus H Ekkehard, Daniel-Vedele Fran\u00e7oise, Krapp Anne", "reference": { "type": "PubMed", "id": "23583552", "url": "https://pubmed.ncbi.nlm.nih.gov/23583552" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q84WN3-1", "protein_name": "Bidirectional sugar transporter SWEET17", "gene_name": "SWEET17", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84WN3", "url": "https://www.uniprot.org/uniprotkb/Q84WN3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.23583552", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], 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}, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "SWEET17, a facilitative transporter, mediates fructose transport across the tonoplast of Arabidopsis roots and leaves.", "journal": "Plant physiology", "date": "2014-02", "authors": "Guo Woei-Jiun, Nagy Reka, Chen Hsin-Yi, Pfrunder Stefanie, Yu Ya-Chi, Santelia Diana, Frommer Wolf B, Martinoia Enrico", "reference": { 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