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Behav.", "date": "2012", "authors": "Gao Zhi-Ping, Chen Guo-Xiang, Yang Zhong-Nan", "reference": { "type": "PubMed", "id": "22902688", "url": "https://pubmed.ncbi.nlm.nih.gov/22902688" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q84JF5-1", "protein_name": "Protein PLASTID TRANSCRIPTIONALLY ACTIVE 14", "gene_name": "PTAC14", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4IHY7-1", "protein_name": "Protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic", "gene_name": "PTAC12", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84JF5", "url": "https://www.uniprot.org/uniprotkb/Q84JF5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.22902688", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Arabidopsis Seedling Lethal 1 interacting with plastid-encoded RNA polymerase complex proteins is essential for chloroplast development.", "journal": "Front. Plant Sci.", "date": "2020", "authors": "Jiang Deyuan, Tang Renjie, Shi Yafei, Ke Xiangsheng, Wang Yetao, Che Yufen, Luan Sheng, Hou Xin", "reference": { "type": "PubMed", "id": "33391315", "url": "https://pubmed.ncbi.nlm.nih.gov/33391315" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q84JF5-1", "protein_name": "Protein PLASTID TRANSCRIPTIONALLY ACTIVE 14", "gene_name": "PTAC14", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8VZV9-1", "protein_name": "Protein PLASTID TRANSCRIPTIONALLY ACTIVE 7", "gene_name": "PTAC7", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4IHY7-1", "protein_name": "Protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic", "gene_name": "PTAC12", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SJ50-1", "protein_name": "Protein SEEDLING LETHAL 1, chloroplastic", "gene_name": "SL1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, 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"authors": "Konert Grzegorz, Rahikainen Moona, Trotta Andrea, Durian Guido, Saloj\u00e4rvi Jarkko, Khorobrykh Sergey, Tyystj\u00e4rvi Esa, Kangasj\u00e4rvi Saijaliisa", "reference": { "type": "PubMed", "id": "26012558", "url": "https://pubmed.ncbi.nlm.nih.gov/26012558" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8RW96-1", "protein_name": "Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' gamma isoform", "gene_name": "ATB'; B'GAMMA", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LVE2-1", "protein_name": "Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' zeta isoform", "gene_name": "B'ZETA", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8RW96", "url": "https://www.uniprot.org/uniprotkb/Q8RW96" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis 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"Biological chemistry", "date": "2007-02", "authors": "Schilling Stephan, Stenzel Irene, von Bohlen Alex, Wermann Michael, Schulz Katrin, Demuth Hans-Ulrich, Wasternack Claus", "reference": { "type": "PubMed", "id": "17261077", "url": "https://pubmed.ncbi.nlm.nih.gov/17261077" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q84WV9-1", "protein_name": "Glutaminyl-peptide cyclotransferase", "gene_name": "QCT; QC", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84WV9", "url": "https://www.uniprot.org/uniprotkb/Q84WV9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.17261077", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": 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"referenced_proteins": [ { "uniprot_canonical_ac": "Q8S3D5-1", "protein_name": "Transcription factor LRL2", "gene_name": "LRL2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LSQ3-1", "protein_name": "Transcription factor LRL3", "gene_name": "LRL3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9ZUG9-1", "protein_name": "Transcription factor LRL1", "gene_name": "LRL1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8S3D5", "url": "https://www.uniprot.org/uniprotkb/Q8S3D5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.19675148", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ 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"o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Sperm cells are passive cargo of the pollen tube in plant fertilization.", "journal": "Nature plants", "date": "2017-06-06", "authors": "Zhang Jun, Huang Qingpei, Zhong Sheng, Bleckmann Andrea, Huang Jiaying, Guo Xinyang, Lin Qing, Gu Hongya, Dong Juan, Dresselhaus Thomas, Qu Li-Jia", "reference": { "type": "PubMed", "id": "28585562", "url": "https://pubmed.ncbi.nlm.nih.gov/28585562" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8S3D5-1", "protein_name": "Transcription factor LRL2", "gene_name": "LRL2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LSQ3-1", "protein_name": "Transcription factor LRL3", "gene_name": "LRL3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9ZUG9-1", "protein_name": "Transcription factor LRL1", "gene_name": "LRL1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8S3D5", "url": "https://www.uniprot.org/uniprotkb/Q8S3D5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.28585562", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { 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Altered stability and protease accessibility of the mitochondrial complex to which it localizes. Impaired mitochondrial biogenesis, mitochondrial size, lipid content and composition, protein import and abundance, and respiratory capacity. Higher tolerance to drought stress, but early senescence phenotype. Reduced expression of DGS1, MIC60, TOM40 and TOM20-2 proteins but accumulation of petC/RISP. 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Exp. 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"2011-08", "authors": "Lee Chanhui, Teng Quincy, Zhong Ruiqin, Ye Zheng-Hua", "reference": { "type": "PubMed", "id": "21673009", "url": "https://pubmed.ncbi.nlm.nih.gov/21673009" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8L7C8-1", "protein_name": "Protein REDUCED WALL ACETYLATION 1", "gene_name": "RWA1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FXG3-1", "protein_name": "Protein REDUCED WALL ACETYLATION 4", "gene_name": "RWA4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q0WW17-1", "protein_name": "Protein REDUCED WALL ACETYLATION 2", "gene_name": "RWA2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q66GQ5-1", "protein_name": "Protein REDUCED WALL ACETYLATION 3", "gene_name": "RWA3", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8L7C8", "url": "https://www.uniprot.org/uniprotkb/Q8L7C8" } ], 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[] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Reduced Wall Acetylation proteins play vital and distinct roles in cell wall O-acetylation in Arabidopsis.", "journal": "Plant physiology", "date": "2013-11", "authors": "Manabe Yuzuki, Verhertbruggen Yves, Gille Sascha, Harholt Jesper, Chong Sun-Li, Pawar Prashant Mohan-Anupama, Mellerowicz Ewa J, Tenkanen Maija, Cheng Kun, Pauly Markus, Scheller Henrik Vibe", "reference": { "type": "PubMed", "id": "24019426", "url": "https://pubmed.ncbi.nlm.nih.gov/24019426" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8L7C8-1", "protein_name": "Protein REDUCED WALL ACETYLATION 1", "gene_name": "RWA1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FXG3-1", "protein_name": "Protein REDUCED WALL ACETYLATION 4", "gene_name": "RWA4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q0WW17-1", "protein_name": "Protein REDUCED WALL ACETYLATION 2", "gene_name": "RWA2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q66GQ5-1", "protein_name": "Protein REDUCED WALL ACETYLATION 3", "gene_name": "RWA3", "tax_name": "Mouse-ear 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[] } ] }, { "title": "Arabidopsis acyl-CoA-binding proteins ACBP4 and ACBP5 are subcellularly localized to the cytosol and ACBP4 depletion affects membrane lipid composition.", "journal": "Plant Mol. Biol.", "date": "2008", "authors": "Xiao Shi, Li Hong-Ye, Zhang Jiao-Ping, Chan Suk-Wah, Chye Mee-Len", "reference": { "type": "PubMed", "id": "18773301", "url": "https://pubmed.ncbi.nlm.nih.gov/18773301" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8RWD9-1", "protein_name": "Acyl-CoA-binding domain-containing protein 5", "gene_name": "ACBP5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9MA55-1", "protein_name": "Acyl-CoA-binding domain-containing protein 4", "gene_name": "ACBP4", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8RWD9", "url": "https://www.uniprot.org/uniprotkb/Q8RWD9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.18773301", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "An Arabidopsis family of six acyl-CoA-binding proteins has three cytosolic members.", "journal": "Plant Physiol. 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Model.", "date": "2012", "authors": "Nahar Noor, Rahman Aminur, Mo\u015b Maria, Warzecha Tomasz, Algerin Maria, Ghosh Sibdas, Johnson-Brousseau Sheila, Mandal Abul", "reference": { "type": "PubMed", "id": "22562211", "url": "https://pubmed.ncbi.nlm.nih.gov/22562211" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8GY31-1", "protein_name": "Dual specificity phosphatase Cdc25", "gene_name": "CDC25", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GY31", "url": "https://www.uniprot.org/uniprotkb/Q8GY31" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.22562211", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", 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"Plant Physiol.", "date": "2004", "authors": "Elorza Alvaro, Le\u00f3n Gabriel, G\u00f3mez Isabel, Mouras Armand, Holuigue Loreto, Araya Alejandro, Jordana Xavier", "reference": { "type": "PubMed", "id": "15563621", "url": "https://pubmed.ncbi.nlm.nih.gov/15563621" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8LB02-1", "protein_name": "Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial", "gene_name": "SDH2-2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8LBZ7-1", "protein_name": "Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 1, mitochondrial", "gene_name": "SDH2-1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8LB02", "url": "https://www.uniprot.org/uniprotkb/Q8LB02" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], 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The first committed step of the pathway is catalyzed by a cytosolic 7-keto-8-aminopelargonic acid synthase.", "journal": "Plant physiology", "date": "2005-12", "authors": "Pinon Violaine, Ravanel St\u00e9phane, Douce Roland, Alban Claude", "reference": { "type": "PubMed", "id": "16299174", "url": "https://pubmed.ncbi.nlm.nih.gov/16299174" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8GW43-1", "protein_name": "8-amino-7-oxononanoate synthase", "gene_name": "BIOF", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8GW43", "url": "https://www.uniprot.org/uniprotkb/Q8GW43" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.16299174", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { 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enzyme/oxidized protein hydrolase in sustaining homeostasis of the cytoplasmic antioxidative system.", "journal": "Planta", "date": "2012-08", "authors": "Nakai Atsushi, Yamauchi Yasuo, Sumi Sawako, Tanaka Kiyoshi", "reference": { "type": "PubMed", "id": "22398639", "url": "https://pubmed.ncbi.nlm.nih.gov/22398639" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q84LM4-1", "protein_name": "Acylamino-acid-releasing enzyme", "gene_name": "AARE", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q84LM4", "url": "https://www.uniprot.org/uniprotkb/Q84LM4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.22398639", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A complex containing PGRL1 and PGR5 is involved in the switch between linear and cyclic electron flow in Arabidopsis.", "journal": "Cell", "date": "2008-01-25", "authors": "DalCorso Giovanni, Pesaresi Paolo, Masiero Simona, Aseeva Elena, Sch\u00fcnemann Danja, Finazzi Giovanni, Joliot Pierre, Barbato Roberto, Leister Dario", "reference": { "type": "PubMed", "id": "18243102", "url": "https://pubmed.ncbi.nlm.nih.gov/18243102" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8H112-1", "protein_name": "PGR5-like protein 1A, chloroplastic", "gene_name": "PGR5-LIKE; PGRL1A", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8GYC7-1", "protein_name": "PGR5-like protein 1B, chloroplastic", "gene_name": "PGRL1B", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FKW6-1", "protein_name": "Ferredoxin--NADP reductase, leaf isozyme 1, chloroplastic", "gene_name": "FNR1; LFNR1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8W493-1", "protein_name": "Ferredoxin--NADP reductase, leaf isozyme 2, chloroplastic", "gene_name": "LFNR2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9S7H1-1", "protein_name": "Photosystem I reaction center subunit II-1, chloroplastic", "gene_name": "psaD1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P16972-1", "protein_name": "Ferredoxin-2, chloroplastic", "gene_name": "FD2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SL05-1", "protein_name": "Protein PROTON GRADIENT REGULATION 5, chloroplastic", "gene_name": "PGR5", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8H112", "url": "https://www.uniprot.org/uniprotkb/Q8H112" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.18243102", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Drought stress-induced upregulation of components involved in ferredoxin-dependent cyclic electron transfer.", "journal": "J. Plant Physiol.", "date": "2010", "authors": "Lehtim\u00e4ki Nina, Lintala Minna, Allahverdiyeva Yagut, Aro Eva-Mari, Mulo Paula", "reference": { "type": "PubMed", "id": "20392519", "url": "https://pubmed.ncbi.nlm.nih.gov/20392519" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8H112-1", "protein_name": "PGR5-like protein 1A, chloroplastic", "gene_name": "PGR5-LIKE; PGRL1A", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8GYC7-1", "protein_name": "PGR5-like protein 1B, chloroplastic", "gene_name": "PGRL1B", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SL05-1", "protein_name": "Protein PROTON GRADIENT REGULATION 5, chloroplastic", "gene_name": "PGR5", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8H112", "url": "https://www.uniprot.org/uniprotkb/Q8H112" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.20392519", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] } ]