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"journal": "Chemosphere", "date": "2022", "authors": "Zhao Guang, Zhu Yuejie, Hu Jun, Gao Meng, Hong Yijiang", "reference": { "type": "PubMed", "id": "34933029", "url": "https://pubmed.ncbi.nlm.nih.gov/34933029" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q98SV1-1", "protein_name": "Selenoprotein Pa", "gene_name": "selenop; sepp1a", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q98SV1", "url": "https://www.uniprot.org/uniprotkb/Q98SV1" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.34933029", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] 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Sci Alliance", "date": "2022", "authors": "Kiledjian Nora T, Shah Rushvi, Vetick Michael B, Copeland Paul R", "reference": { "type": "PubMed", "id": "35210313", "url": "https://pubmed.ncbi.nlm.nih.gov/35210313" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q98SV1-1", "protein_name": "Selenoprotein Pa", "gene_name": "selenop; sepp1a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1PCD1-1", "protein_name": "thioredoxin-disulfide reductase (NADPH)", "gene_name": "txnrd3", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB13A3F5-1", "protein_name": "thioredoxin-disulfide reductase (NADPH)", "gene_name": "txnrd2.2", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q98SV1", "url": "https://www.uniprot.org/uniprotkb/Q98SV1" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": 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Govindarajan Kunde R, Tong Yan, Wu Yi Lian, Lam Siew Hong, Yang Henry, Ruan Yijun, Korzh Vladimir, Gong Zhiyuan, Liu Edison T, Lufkin Thomas", "reference": { "type": "PubMed", "id": "16132083", "url": "https://pubmed.ncbi.nlm.nih.gov/16132083" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A8M1PCM8-1", "protein_name": "Transcription elongation regulator 1", "gene_name": "tcerg1a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q6PCR6-1", "protein_name": "Zinc finger RNA-binding protein", "gene_name": "zfr", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0A8M1PCM8", "url": "https://www.uniprot.org/uniprotkb/A0A8M1PCM8" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.16132083", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], 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Physiol.", "date": "2019", "authors": "Navarro-Guill\u00e9n Carmen, Dias Jorge, Rocha Filipa, Castanheira M F, Martins Catarina I M, Laiz\u00e9 Vincent, Gavaia Paulo J, Engrola Sofia", "reference": { "type": "PubMed", "id": "30393112", "url": "https://pubmed.ncbi.nlm.nih.gov/30393112" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8JGS9-1", "protein_name": "Small ribosomal subunit protein uS13", "gene_name": "rps18", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q8JGS9", "url": "https://www.uniprot.org/uniprotkb/Q8JGS9" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.30393112", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "40S ribosomal protein S18 is a novel maternal peptidoglycan-binding protein that protects embryos of zebrafish from bacterial infections.", "journal": "Dev. 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"Conservation of steroidogenic acute regulatory (StAR) protein structure and expression in vertebrates.", "journal": "Mol. Cell. Endocrinol.", "date": "2000", "authors": "Bauer M P, Bridgham J T, Langenau D M, Johnson A L, Goetz F W", "reference": { "type": "PubMed", "id": "11064158", "url": "https://pubmed.ncbi.nlm.nih.gov/11064158" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9DFS4-1", "protein_name": "StAR-related lipid transfer protein 3", "gene_name": "stard3", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q9DG10-1", "protein_name": "Steroidogenic acute regulatory protein, mitochondrial", "gene_name": "star", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q9DG09-1", "protein_name": "Steroidogenic acute regulatory protein, mitochondrial", "gene_name": "STAR", "tax_name": "Chicken" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q9DFS4", "url": "https://www.uniprot.org/uniprotkb/Q9DFS4" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.11064158", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Zebrafish genes for neuropeptide Y and peptide YY reveal origin by chromosome duplication from an ancestral gene linked to the homeobox cluster.", "journal": "J. Neurochem.", "date": "2000", "authors": "S\u00f6derberg C, Wraith A, Ringvall M, Yan Y L, Postlethwait J H, Brodin L, Larhammar D", "reference": { "type": "PubMed", "id": "10936170", "url": "https://pubmed.ncbi.nlm.nih.gov/10936170" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9I8P2-1", "protein_name": "Peptide YY-A", "gene_name": "pyya", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q9I8P3-1", "protein_name": "Pro-neuropeptide Y", "gene_name": "npy", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q9I8P2", "url": "https://www.uniprot.org/uniprotkb/Q9I8P2" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.10936170", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", 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"count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Developmental expression of NPY/PYY receptors zYb and zYc in zebrafish.", "journal": "Annals of the New York Academy of Sciences", "date": "2005-04", "authors": "Mathieu Maura, Trombino Sonya, Argenton Francesco, Larhammar Dan, Vallarino Mauro", "reference": { "type": "PubMed", "id": "15891072", "url": "https://pubmed.ncbi.nlm.nih.gov/15891072" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9I8P2-1", "protein_name": "Peptide YY-A", "gene_name": "pyya", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q9I8P3-1", "protein_name": "Pro-neuropeptide Y", "gene_name": "npy", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q9I8P2", "url": "https://www.uniprot.org/uniprotkb/Q9I8P2" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.15891072", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ 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Biol.", "date": "2007", "authors": "Li Chenhong, Ort\u00ed Guillermo, Zhang Gong, Lu Guoqing", "reference": { "type": "PubMed", "id": "17374158", "url": "https://pubmed.ncbi.nlm.nih.gov/17374158" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9I919-1", "protein_name": "Probable G protein-coupled receptor 85", "gene_name": "gpr85", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q9I919", "url": "https://www.uniprot.org/uniprotkb/Q9I919" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.17374158", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { 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"glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The complete sequence of the zebrafish (Danio rerio) mitochondrial genome and evolutionary patterns in vertebrate mitochondrial DNA.", "journal": "Genome Res.", "date": "2001", "authors": "Broughton R E, Milam J E, Roe B A", "reference": { "type": "PubMed", "id": "11691861", "url": "https://pubmed.ncbi.nlm.nih.gov/11691861" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9MIX8-1", "protein_name": "Cytochrome b", "gene_name": "mt-cyb", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q9MIX9-1", "protein_name": "NADH-ubiquinone oxidoreductase chain 6", "gene_name": "mt-nd6", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q9MIY0-1", "protein_name": "NADH-ubiquinone oxidoreductase chain 5", "gene_name": "mt-nd5", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q9MIY1-1", "protein_name": "NADH-ubiquinone oxidoreductase chain 4", "gene_name": "mt-nd4", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q9MIY2-1", "protein_name": "NADH-ubiquinone oxidoreductase chain 4L", "gene_name": "mt-nd4l", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q9MIY3-1", "protein_name": "NADH-ubiquinone oxidoreductase chain 3", "gene_name": "mt-nd3", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q9MIY4-1", "protein_name": "Cytochrome c oxidase subunit 3", "gene_name": "mt-co3", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q9MIY5-1", "protein_name": "ATP synthase F(0) complex subunit a", "gene_name": "mt-atp6", "tax_name": "Zebrafish" }, { 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}, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Mutually exclusive glomerular innervation by two distinct types of olfactory sensory neurons revealed in transgenic zebrafish.", "journal": "J. Neurosci.", "date": "2005", "authors": "Sato Yuki, Miyasaka Nobuhiko, Yoshihara Yoshihiro", "reference": { "type": "PubMed", "id": "15901770", "url": "https://pubmed.ncbi.nlm.nih.gov/15901770" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9PRJ2-1", "protein_name": "Olfactory receptor", "gene_name": "or30bt1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0T300-1", "protein_name": "Olfactory receptor CD2 precursor", "gene_name": "olfcd2", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q9PRJ2", "url": "https://www.uniprot.org/uniprotkb/Q9PRJ2" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.15901770", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Three structurally and functionally conserved Hlx genes in zebrafish.", "journal": "Biochim. Biophys. Acta", "date": "1999", "authors": "Seo H C, Nilsen F, Fjose A", "reference": { "type": "PubMed", "id": "10673033", "url": "https://pubmed.ncbi.nlm.nih.gov/10673033" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9PTU0-1", "protein_name": "Homeobox protein DBX1-B", "gene_name": "dbx1b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q9PTU1-1", "protein_name": "Homeobox protein DBX1-A", "gene_name": "dbx1a", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q9PTU0", "url": "https://www.uniprot.org/uniprotkb/Q9PTU0" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.10673033", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Faithful expression of green fluorescent protein (GFP) in transgenic zebrafish embryos under control of zebrafish gene promoters.", "journal": "Dev. Genet.", "date": "1999", "authors": "Ju B, Xu Y, He J, Liao J, Yan T, Hew C L, Lam T J, Gong Z", "reference": { "type": "PubMed", "id": "10440850", "url": "https://pubmed.ncbi.nlm.nih.gov/10440850" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9PV90-1", "protein_name": "Large ribosomal subunit protein uL10", "gene_name": "rplp0", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QK60-1", "protein_name": "Keratin, type II cytoskeletal 4", "gene_name": "krt4", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q9PV90", "url": "https://www.uniprot.org/uniprotkb/Q9PV90" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.10440850", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Phylogenetic analysis of vertebrate lactate dehydrogenase (LDH) multigene families.", "journal": "J. Mol. Evol.", "date": "2002", "authors": "Li Yi-Ju, Tsoi Stephen C-M, Mannen Hideyuka, Shoei-lung Li Steven", "reference": { "type": "PubMed", "id": "11965434", "url": "https://pubmed.ncbi.nlm.nih.gov/11965434" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9PVK4-1", "protein_name": "L-lactate dehydrogenase B-A chain", "gene_name": "ldhba", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q9PVK4", "url": "https://www.uniprot.org/uniprotkb/Q9PVK4" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.11965434", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] 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[] } ] }, { "title": "A new antennepedia-class gene from the zebrafish.", "journal": "Nucleic Acids Res.", "date": "1991", "authors": "Runstadler J A, Kocher T D", "reference": { "type": "PubMed", "id": "1681510", "url": "https://pubmed.ncbi.nlm.nih.gov/1681510" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9PWL5-1", "protein_name": "Homeobox protein Hox-A4a", "gene_name": "hoxa4a", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q9PWL5", "url": "https://www.uniprot.org/uniprotkb/Q9PWL5" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.1681510", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ 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Biol.", "date": "1999", "authors": "F\u00fcrthauer M, Thisse B, Thisse C", "reference": { "type": "PubMed", "id": "10491267", "url": "https://pubmed.ncbi.nlm.nih.gov/10491267" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9W740-1", "protein_name": "Noggin-2", "gene_name": "nog2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q9W741-1", "protein_name": "Noggin-1", "gene_name": "nog1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q9YHV3-1", "protein_name": "Noggin-3", "gene_name": "nog3", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q9W740", "url": "https://www.uniprot.org/uniprotkb/Q9W740" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.10491267", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ 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Dyn.", "date": "2024", "authors": "Liu Y., Sun Y., Wu J., Lin Q., Zhao D., Ling Y., Meng P.", "reference": { "type": "PubMed", "id": "38450920", "url": "https://pubmed.ncbi.nlm.nih.gov/38450920" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A8M9QCG3-1", "protein_name": "Erythropoietin", "gene_name": "epob", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0A8M9QCG3", "url": "https://www.uniprot.org/uniprotkb/A0A8M9QCG3" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.38450920", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": 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Sci.", "date": "2021", "authors": "Gomes G, do Amaral MJ, Bagri KM, Vasconcellos LM, Almeida MDS, Alvares LE, Mermelstein C", "reference": { "type": "PubMed", "id": "34884689", "url": "https://pubmed.ncbi.nlm.nih.gov/34884689" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A8M9QJL3-1", "protein_name": "LIM domain only protein 7 isoform X1", "gene_name": "lmo7a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F6NN15-1", "protein_name": "3.4.19.12; LIM domain only protein 7b", "gene_name": "lmo7b", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0A8M9QJL3", "url": "https://www.uniprot.org/uniprotkb/A0A8M9QJL3" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.34884689", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "High-throughput behavioral assay to investigate seizure sensitivity in zebrafish implicates ZFHX3 in epilepsy.", "journal": "J. 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