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"count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "MiR-92b inhibited cells EMT by targeting Gabra3 and predicted prognosis of triple negative breast cancer patients.", "journal": "European review for medical and pharmacological sciences", "date": "2019", "authors": "Li YY, Zheng XH, Deng AP, Wang Y, Liu J, Zhou Q, Cheng GY, Jiang Q", "reference": { "type": "PubMed", "id": "31841197", "url": "https://pubmed.ncbi.nlm.nih.gov/31841197" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P34903-1", "protein_name": "Gamma-aminobutyric acid receptor subunit alpha-3", "gene_name": "GABRA3", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P34903", "url": "https://www.uniprot.org/uniprotkb/P34903" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], 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America", "date": "1991-07-15", "authors": "Heisterkamp N, Rajpert-De Meyts E, Uribe L, Forman H J, Groffen J", "reference": { "type": "PubMed", "id": "1676842", "url": "https://pubmed.ncbi.nlm.nih.gov/1676842" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P36269-1", "protein_name": "Glutathione hydrolase 5 proenzyme", "gene_name": "GGT5", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P36269", "url": "https://www.uniprot.org/uniprotkb/P36269" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.1676842", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { 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{ "uniprot_canonical_ac": "P55107-1", "protein_name": "Growth/differentiation factor 10", "gene_name": "GDF10", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P55107", "url": "https://www.uniprot.org/uniprotkb/P55107" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.35163719", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", 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0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Reduced plasma GDF10 levels are positively associated with cholesterol impairment and childhood obesity.", "journal": "Scientific reports", "date": "2024-01-20", "authors": "Yousof Tamana R, Mejia-Benitez Aurora, Morrison Katherine M, Austin Richard C", "reference": { "type": "PubMed", "id": "38245533", "url": "https://pubmed.ncbi.nlm.nih.gov/38245533" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P55107-1", "protein_name": "Growth/differentiation factor 10", "gene_name": "GDF10", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P55107", "url": "https://www.uniprot.org/uniprotkb/P55107" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], 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"total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "cDNA cloning and genomic structure of human bone morphogenetic protein-3B (BMP-3b).", "journal": "Biochem. Biophys. Res. Commun.", "date": "1996", "authors": "Hino J, Takao M, Takeshita N, Konno Y, Nishizawa T, Matsuo H, Kangawa K", "reference": { "type": "PubMed", "id": "8670277", "url": "https://pubmed.ncbi.nlm.nih.gov/8670277" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P55107-1", "protein_name": "Growth/differentiation factor 10", "gene_name": "GDF10", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P55107", "url": "https://www.uniprot.org/uniprotkb/P55107" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.8670277", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Multiple transcription initiation and alternative splicing in the 5' untranslated region of the core 2 beta1-6 N-acetylglucosaminyltransferase I gene.", "journal": "Glycobiology", "date": "2003", "authors": "Falkenberg VR, Alvarez K, Roman C, Fregien N", "reference": { "type": "PubMed", "id": "12626388", "url": "https://pubmed.ncbi.nlm.nih.gov/12626388" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q02742-1", "protein_name": "Beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase", "gene_name": "GCNT1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q02742", "url": "https://www.uniprot.org/uniprotkb/Q02742" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.12626388", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "N-glycans of core2 beta(1,6)-N-acetylglucosaminyltransferase-I (C2GnT-I) but not those of alpha(1,3)-fucosyltransferase-VII (FucT-VII) are required for the synthesis of functional P-selectin glycoprotein ligand-1 (PSGL-1): effects on P-, L- and E-selectin binding.", "journal": "The Biochemical journal", "date": "2005", "authors": "Prorok-Hamon M, Notel F, Mathieu S, Langlet C, Fukuda M, El-Battari A", "reference": { "type": "PubMed", "id": "15926890", "url": "https://pubmed.ncbi.nlm.nih.gov/15926890" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q02742-1", "protein_name": "Beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase", "gene_name": "GCNT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q11130-1", "protein_name": "Alpha-(1,3)-fucosyltransferase 7", "gene_name": "FUT7", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q02742", "url": "https://www.uniprot.org/uniprotkb/Q02742" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true, "automatic_literature_mining": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 95, "start_aa": "Asn", "end_pos": 95, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn95", "evidence": [ { "id": "Q02742", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q02742#ptm_processing" }, { "id": "15926890", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/15926890" }, { "id": "GLY_000481", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000481" } ], "mining_tool": "RLIMS-G_1.0", "mining_tool_list": [ { "label": "RLIMS-G_1.0" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "Q02742-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 291, "start_aa": "Asn", "end_pos": 291, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn291", "evidence": [ { "id": "Q11130", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q11130#ptm_processing" }, { "id": "15926890", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/15926890" } ], "filter_code": "001000000000000000000.00010000000000.00.01100", "uniprot_canonical_ac": "Q11130-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 81, "start_aa": "Asn", "end_pos": 81, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn81", "evidence": [ { "id": "Q11130", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q11130#ptm_processing" }, { "id": "15926890", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/15926890" } ], "filter_code": "001000000000000000000.00010000000000.00.01101", "uniprot_canonical_ac": "Q11130-1" } ], "mutagenesis": [ { "start_pos": 291, "end_pos": 291, "sequence_org": "N", "sequence_mut": "Q", "comment": "Slightly affects glycosylation. Impairs glycosylation; when associated with Q-81. Does not affect SELP and SELL binding on SELPLG. Does not affect SELP and SELL binding on SELPLG; when associated with Q-81. Abolishes alpha-(1,3)-fucosyltransferase activity. Abolishes alpha-(1,3)-fucosyltransferase activity; when associated with Q-81. Fails to synthetises sLe(x) antigens or to generate SELE binding. Fails to synthetises sLe(x) antigens or to generate SELE binding; when associated with Q-81. Does not affect sLe(x) antigens synthesis or SELE binding only in presence of SELPLG and GCNT1; when associated with Q-81.", "evidence": [ { "database": "UniProtKB", "id": "Q11130", "url": "https://www.uniprot.org/uniprotkb/Q11130" }, { "database": "PubMed", "id": "15926890", "url": "https://pubmed.ncbi.nlm.nih.gov/15926890" } ], "uniprot_canonical_ac": "Q11130-1" }, { "start_pos": 81, "end_pos": 81, "sequence_org": "N", "sequence_mut": "Q", "comment": "Impairs glycosylation. Impairs glycosylation; when associated with Q-291. Does not affect SELP and SELL binding on SELPLG. Does not affect SELP and SELL binding on SELPLG; when associated with Q-291. Abolishes alpha-(1,3)-fucosyltransferase activity. Abolishes alpha-(1,3)-fucosyltransferase activity; when associated with Q-291. Fails to synthetises sLe(x) antigens or to generate SELE binding. Fails to synthetises sLe(x) antigens or to generate SELE binding; when associated with Q-291. Does not affect sLe(x) antigens synthesis or SELE binding only in presence of SELPLG and GCNT1; when associated with Q-291.", "evidence": [ { "database": "UniProtKB", "id": "Q11130", "url": "https://www.uniprot.org/uniprotkb/Q11130" }, { "database": "PubMed", "id": "15926890", "url": "https://pubmed.ncbi.nlm.nih.gov/15926890" } ], "uniprot_canonical_ac": "Q11130-1" } ], "record_id": "pubmed.15926890", "abstract": "", "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 3 }, { "field": "total_sites", "count": 3 }, { "field": "n_linked_sites", "count": 3 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 3 }, { "field": "exact_n_linked_sites", "count": 3 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl", "mining_tool", "filter_code", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_n_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl", "mining_tool", "filter_code", "uniprot_canonical_ac" ] } ] }, { "title": "Increased expression of GCNT1 is associated with altered O-glycosylation of PSA, PAP, and MUC1 in human prostate cancers.", "journal": "The Prostate", "date": "2014", "authors": "Chen Z, Gulzar ZG, St Hill CA, Walcheck B, Brooks JD", "reference": { "type": "PubMed", "id": "24854630", "url": "https://pubmed.ncbi.nlm.nih.gov/24854630" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q02742-1", "protein_name": "Beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase", "gene_name": "GCNT1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q02742", "url": "https://www.uniprot.org/uniprotkb/Q02742" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": 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"table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Restoration of compact Golgi morphology in advanced prostate cancer enhances susceptibility to galectin-1-induced apoptosis by modifying mucin O-glycan synthesis.", "journal": "Molecular cancer research : MCR", "date": "2014", "authors": "Petrosyan A, Holzapfel MS, Muirhead DE, Cheng PW", "reference": { "type": "PubMed", "id": "25086069", "url": "https://pubmed.ncbi.nlm.nih.gov/25086069" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q02742-1", "protein_name": "Beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase", "gene_name": "GCNT1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q02742", "url": "https://www.uniprot.org/uniprotkb/Q02742" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.25086069", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Detection of Core2 beta-1,6-N-Acetylglucosaminyltransferase in Post-Digital Rectal Examination Urine Is a Reliable Indicator for Extracapsular Extension of Prostate Cancer.", "journal": "PloS one", "date": "2015", "authors": "Kojima Y, Yoneyama T, Hatakeyama S, Mikami J, Sato T, Mori K, Hashimoto Y, Koie T, Ohyama C, Fukuda M, Tobisawa Y", "reference": { "type": "PubMed", "id": "26390303", "url": "https://pubmed.ncbi.nlm.nih.gov/26390303" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q02742-1", "protein_name": "Beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase", "gene_name": "GCNT1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q02742", "url": "https://www.uniprot.org/uniprotkb/Q02742" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.26390303", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Core 2 beta-1, 6-N-acetylglucosaminyltransferase-1 expression in prostate biopsy specimen is an indicator of prostate cancer aggressiveness.", "journal": "Biochemical and biophysical research communications", "date": "2016", "authors": "Sato T, Yoneyama T, Tobisawa Y, Hatakeyama S, Yamamoto H, Kojima Y, Mikami J, Mori K, Hashimoto Y, Koie T, Ohyama C", "reference": { "type": "PubMed", "id": "26768364", "url": "https://pubmed.ncbi.nlm.nih.gov/26768364" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q02742-1", "protein_name": "Beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase", "gene_name": "GCNT1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q02742", "url": "https://www.uniprot.org/uniprotkb/Q02742" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.26768364", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The role of GCNT1 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Footz T, French CR, Abitbol M, Fleisch VC, Corbett N, Allison WT, Drummond G, Walter MA, Underhill TM, Waskiewicz AJ, Lehmann OJ", "reference": { "type": "PubMed", "id": "19864492", "url": "https://pubmed.ncbi.nlm.nih.gov/19864492" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q6KF10-1", "protein_name": "Growth/differentiation factor 6", "gene_name": "GDF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NR23-1", "protein_name": "Growth/differentiation factor 3", "gene_name": "GDF3", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q6KF10", "url": "https://www.uniprot.org/uniprotkb/Q6KF10" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.19864492", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": 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[] } ] }, { "title": "Further delineation of the GDF6 related multiple synostoses syndrome.", "journal": "American journal of medical genetics. 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Rapha\u00ebl, Toussaint B\u00e9n\u00e9dicte, Vaillant Emmanuel, Dechaume Aur\u00e9lie, Loiselle H\u00e9l\u00e8ne, Balkau Beverley, Charpentier Guillaume, Franc Sylvia, Marre Michel, Baron Morgane, Vaxillaire Martine, Derhourhi Mehdi, Boissel Mathilde, Froguel Philippe, Bonnefond Am\u00e9lie", "reference": { "type": "PubMed", "id": "38051360", "url": "https://pubmed.ncbi.nlm.nih.gov/38051360" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8NEA6-1", "protein_name": "Zinc finger protein GLIS3", "gene_name": "GLIS3", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q8NEA6", "url": "https://www.uniprot.org/uniprotkb/Q8NEA6" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.38051360", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { 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"count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A comprehensive interaction map of the human survival of motor neuron (SMN) complex.", "journal": "J. Biol. Chem.", "date": "2007", "authors": "Otter Simon, Grimmler Matthias, Neuenkirchen Nils, Chari Ashwin, Sickmann Albert, Fischer Utz", "reference": { "type": "PubMed", "id": "17178713", "url": "https://pubmed.ncbi.nlm.nih.gov/17178713" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8TEQ6-1", "protein_name": "Gem-associated protein 5", "gene_name": "GEMIN5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57678-1", "protein_name": "Gem-associated protein 4", "gene_name": "GEMIN4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHI6-1", "protein_name": "Probable ATP-dependent RNA helicase DDX20", "gene_name": "DDX20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16637-1", "protein_name": "Survival motor neuron protein", "gene_name": "SMN1; SMN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NWZ8-1", "protein_name": "Gem-associated protein 8", "gene_name": "GEMIN8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14893-1", 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"count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Gemin5-snRNA interaction reveals an RNA binding function for WD repeat domains.", "journal": "Nature structural & molecular biology", "date": "2009", "authors": "Lau CK, Bachorik JL, Dreyfuss G", "reference": { "type": "PubMed", "id": "19377484", "url": "https://pubmed.ncbi.nlm.nih.gov/19377484" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8TEQ6-1", "protein_name": "Gem-associated protein 5", "gene_name": "GEMIN5", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q8TEQ6", "url": "https://www.uniprot.org/uniprotkb/Q8TEQ6" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 271, "end_pos": 273, "sequence_org": "KRR", "sequence_mut": "AAA", "comment": "No effect in interaction with U4 snRNA. No effect on interaction with SMN complex.", "evidence": [ { "database": "UniProtKB", "id": "Q8TEQ6", "url": "https://www.uniprot.org/uniprotkb/Q8TEQ6" }, { "database": "PubMed", "id": "19377484", "url": "https://pubmed.ncbi.nlm.nih.gov/19377484" } ], "uniprot_canonical_ac": "Q8TEQ6-1" }, { "start_pos": 286, "end_pos": 286, "sequence_org": "W", "sequence_mut": "A", "comment": "Abolishes interaction with U4 snRNA. Abolishes interaction with the 7-methylguanosine cap of RNA molecules. No effect on interaction with SMN complex.", "evidence": [ { "database": "UniProtKB", "id": "Q8TEQ6", "url": "https://www.uniprot.org/uniprotkb/Q8TEQ6" }, { "database": "PubMed", "id": "19377484", "url": "https://pubmed.ncbi.nlm.nih.gov/19377484" }, { "database": "PubMed", "id": "19750007", "url": "https://pubmed.ncbi.nlm.nih.gov/19750007" } ], "uniprot_canonical_ac": "Q8TEQ6-1" }, { "start_pos": 290, "end_pos": 290, "sequence_org": "H", "sequence_mut": "A", "comment": "No effect in interaction with U4 snRNA. No effect on interaction with SMN complex.", "evidence": [ { "database": "UniProtKB", "id": "Q8TEQ6", "url": "https://www.uniprot.org/uniprotkb/Q8TEQ6" }, { "database": "PubMed", "id": "19377484", "url": "https://pubmed.ncbi.nlm.nih.gov/19377484" } ], "uniprot_canonical_ac": "Q8TEQ6-1" } ], "record_id": "pubmed.19377484", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Identification of gemin5 as a novel 7-methylguanosine cap-binding protein.", "journal": "PloS one", "date": "2009", "authors": "Bradrick SS, Gromeier M", "reference": { "type": "PubMed", "id": "19750007", "url": "https://pubmed.ncbi.nlm.nih.gov/19750007" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8TEQ6-1", "protein_name": "Gem-associated protein 5", "gene_name": "GEMIN5", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q8TEQ6", "url": "https://www.uniprot.org/uniprotkb/Q8TEQ6" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 286, "end_pos": 286, "sequence_org": "W", "sequence_mut": "A", "comment": "Abolishes interaction with U4 snRNA. Abolishes interaction with the 7-methylguanosine cap of RNA molecules. No effect on interaction with SMN complex.", "evidence": [ { "database": "UniProtKB", "id": "Q8TEQ6", "url": "https://www.uniprot.org/uniprotkb/Q8TEQ6" }, { "database": "PubMed", "id": "19377484", "url": "https://pubmed.ncbi.nlm.nih.gov/19377484" }, { "database": "PubMed", "id": "19750007", "url": "https://pubmed.ncbi.nlm.nih.gov/19750007" } ], "uniprot_canonical_ac": "Q8TEQ6-1" } ], "record_id": "pubmed.19750007", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": 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"o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Gemin5 delivers snRNA precursors to the SMN complex for snRNP biogenesis.", "journal": "Molecular cell", "date": "2010", "authors": "Yong J, Kasim M, Bachorik JL, Wan L, Dreyfuss G", "reference": { "type": "PubMed", "id": "20513430", "url": "https://pubmed.ncbi.nlm.nih.gov/20513430" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8TEQ6-1", "protein_name": "Gem-associated protein 5", "gene_name": "GEMIN5", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q8TEQ6", "url": "https://www.uniprot.org/uniprotkb/Q8TEQ6" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.20513430", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], 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}, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The RNA-binding protein Gemin5 binds directly to the ribosome and regulates global translation.", "journal": "Nucleic acids research", "date": "2016", "authors": "Francisco-Velilla R, Fernandez-Chamorro J, Ramajo J, Martinez-Salas E", "reference": { "type": "PubMed", "id": "27507887", "url": 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No effect on interaction with the isolated 7-methylguanosine cap that is normally part of RNA molecules. No effect on interaction with 80S ribosomes.", "evidence": [ { "database": "UniProtKB", "id": "Q8TEQ6", "url": "https://www.uniprot.org/uniprotkb/Q8TEQ6" }, { "database": "PubMed", "id": "27881601", "url": "https://pubmed.ncbi.nlm.nih.gov/27881601" }, { "database": "PubMed", "id": "27507887", "url": "https://pubmed.ncbi.nlm.nih.gov/27507887" }, { "database": "PubMed", "id": "27834343", "url": "https://pubmed.ncbi.nlm.nih.gov/27834343" }, { "database": "PubMed", "id": "27881600", "url": "https://pubmed.ncbi.nlm.nih.gov/27881600" } ], "uniprot_canonical_ac": "Q8TEQ6-1" }, { "start_pos": 15, "end_pos": 15, "sequence_org": "Y", "sequence_mut": "A", "comment": "Abolishes interaction with U4 snRNA. No effect on interaction with the isolated 7-methylguanosine cap that is normally part of RNA molecules. No effect on interaction with 80S ribosomes.", "evidence": [ { "database": "UniProtKB", "id": "Q8TEQ6", "url": "https://www.uniprot.org/uniprotkb/Q8TEQ6" }, { "database": "PubMed", "id": "27881601", "url": "https://pubmed.ncbi.nlm.nih.gov/27881601" }, { "database": "PubMed", "id": "27507887", "url": "https://pubmed.ncbi.nlm.nih.gov/27507887" }, { "database": "PubMed", "id": "27834343", "url": "https://pubmed.ncbi.nlm.nih.gov/27834343" }, { "database": "PubMed", "id": "27881600", "url": "https://pubmed.ncbi.nlm.nih.gov/27881600" } ], "uniprot_canonical_ac": "Q8TEQ6-1" }, { "start_pos": 381, "end_pos": 381, "sequence_org": "F", "sequence_mut": "A", "comment": "Strongly decreases interaction with U4 snRNA. No effect on interaction with the isolated 7-methylguanosine cap that is normally part of RNA molecules. 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Juli\u00e1-Palacios Natalia, Urreizti Roser, S\u00e1nchez-Cuesta Ana, Fern\u00e1ndez-Ayala Daniel M, Garc\u00eda-D\u00edaz Elena, Oliva Clara, O Callaghan Maria Del Mar, Paredes-Fuentes Abraham J, Moreno-Lozano Pedro J, Muchart Jordi, Nascimento Andres, Ortez Carlos I, Natera-de Benito Daniel, Pineda Mercedes, Rivera Noelia, Fortuna Tyler R, Rajan Deepa S, Navas Pl\u00e1cido, Salviati Leonardo, Palau Francesc, Yubero Delia, Garc\u00eda-Cazorla Angels, Pandey Udai Bhan, Santos-Oca\u00f1a Carlos, Artuch Rafael", "reference": { "type": "PubMed", "id": "38316953", "url": "https://pubmed.ncbi.nlm.nih.gov/38316953" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8TEQ6-1", "protein_name": "Gem-associated protein 5", "gene_name": "GEMIN5", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q8TEQ6", "url": "https://www.uniprot.org/uniprotkb/Q8TEQ6" } ], "common_name": "Human", 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Expanding the clinical phenotype and genetic spectrum of GEMIN5 disorders: Early-infantile developmental and epileptic encephalopathies.", 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Emerging Role of GCN1 in Disease and Homeostasis.", "journal": "International journal of molecular sciences", "date": "2024-03-05", "authors": "Tatara Yota, Kasai Shuya, Kokubu Daichi, Tsujita Tadayuki, Mimura Junsei, Itoh Ken", "reference": { "type": "PubMed", "id": "38474243", "url": "https://pubmed.ncbi.nlm.nih.gov/38474243" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q92616-1", "protein_name": "Stalled ribosome sensor GCN1", "gene_name": "GCN1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q92616", "url": "https://www.uniprot.org/uniprotkb/Q92616" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.38474243", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], 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"reference": { "type": "PubMed", "id": "11323440", "url": "https://pubmed.ncbi.nlm.nih.gov/11323440" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q96A11-1", "protein_name": "Galactose-3-O-sulfotransferase 3", "gene_name": "GAL3ST3", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q96A11", "url": "https://www.uniprot.org/uniprotkb/Q96A11" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.11323440", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, 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"table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": 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