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J.", "date": "1997", "authors": "Awad S S, Lamb H K, Morgan J M, Dunlop W, Gillespie J I", "reference": { "type": "PubMed", "id": "9148749", "url": "https://pubmed.ncbi.nlm.nih.gov/9148749" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q92736-1", "protein_name": "Ryanodine receptor 2", "gene_name": "RYR2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q92736", "url": "https://www.uniprot.org/uniprotkb/Q92736" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.9148749", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", 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reticulum to support axon regeneration in the adult CNS.", "journal": "Nature communications", "date": "2020", "authors": "Petrova V, Pearson CS, Ching J, Tribble JR, Solano AG, Yang Y, Love FM, Watt RJ, Osborne A, Reid E, Williams PA, Martin KR, Geller HM, Eva R, Fawcett JW", "reference": { "type": "PubMed", "id": "33154382", "url": "https://pubmed.ncbi.nlm.nih.gov/33154382" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q5T4F4-1", "protein_name": "Protrudin", "gene_name": "ZFYVE27", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q5T4F4", "url": "https://www.uniprot.org/uniprotkb/Q5T4F4" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.33154382", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": 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[] } ] }, { "title": "The divergent 5' termini of the alpha human folate receptor (hFR) mRNAs originate from two tissue-specific promoters and alternative splicing: characterization of the alpha hFR gene structure.", "journal": "Biochemistry", "date": "1997", "authors": "Elwood P C, Nachmanoff K, Saikawa Y, Page S T, Pacheco P, Roberts S, Chung K N", "reference": { "type": "PubMed", "id": "9063895", "url": "https://pubmed.ncbi.nlm.nih.gov/9063895" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P15328-1", "protein_name": "Folate receptor alpha", "gene_name": "FOLR1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P15328", "url": "https://www.uniprot.org/uniprotkb/P15328" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.9063895", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], 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"assessed_biomarker_entity": [ "Myosin-binding protein H-like" ], "biomarker_id": "BB1513-1", "biomarker": [ "increased levels of MYBHL" ], "condition": { "id": "DOID:1287", "recommended_name": { "id": "DOID:1287", "resource": "Disease Ontology", "url": "https://disease-ontology.org/term/DOID:1287", "name": "cardiovascular system disease", "description": "A disease of anatomical entity which occurs in the blood, heart, blood vessels or the lymphatic system that passes nutrients (such as amino acids and electrolytes), gases, hormones, blood cells or lymph to and from cells in the body to help fight diseases and help stabilize body temperature and pH to maintain homeostasis." }, "name_list": [ "cardiovascular system disease", "disease of subdivision of hemolymphoid system" ], "id_list": [ "DOID:1287" ] } } ], "record_id": "pubmed.31292467", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": 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"glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Tyrosine-phosphorylated SOCS-3 inhibits STAT activation but binds to p120 RasGAP and activates Ras.", "journal": "Nature cell biology", "date": "2001", "authors": "Cacalano NA, Sanden D, Johnston JA", "reference": { "type": "PubMed", "id": "11331873", "url": "https://pubmed.ncbi.nlm.nih.gov/11331873" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O14543-1", "protein_name": "Suppressor of cytokine signaling 3", "gene_name": "SOCS3", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "O14543", "url": "https://www.uniprot.org/uniprotkb/O14543" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 221, "end_pos": 221, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "IntAct", "id": "O14543", "url": "https://www.ebi.ac.uk/intact/interactors/id:O14543*" }, { "database": "iPTMnet", "id": "O14543", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O14543" }, { "database": "PubMed", "id": "11331873", "url": "https://pubmed.ncbi.nlm.nih.gov/11331873" }, { "database": "PubMed", "id": "12783885", "url": "https://pubmed.ncbi.nlm.nih.gov/12783885" } ], "site_lbl": "Tyr221", "uniprot_canonical_ac": "O14543-1" } ], "record_id": "pubmed.11331873", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": 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"n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Tyrosine phosphorylation disrupts elongin interaction and accelerates SOCS3 degradation.", "journal": "The Journal of biological chemistry", "date": "2003", "authors": "Haan S, Ferguson P, Sommer U, Hiremath M, McVicar DW, Heinrich PC, Johnston JA, Cacalano NA", "reference": { "type": "PubMed", "id": "12783885", "url": "https://pubmed.ncbi.nlm.nih.gov/12783885" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O14543-1", "protein_name": "Suppressor of cytokine signaling 3", "gene_name": "SOCS3", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "O14543", "url": "https://www.uniprot.org/uniprotkb/O14543" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 204, "end_pos": 204, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O14543", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O14543" }, { "database": "PubMed", "id": "12783885", "url": "https://pubmed.ncbi.nlm.nih.gov/12783885" } ], "site_lbl": "Tyr204", "uniprot_canonical_ac": 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "SOCS-3 inhibits IL-12-induced STAT4 activation by binding through its SH2 domain to the STAT4 docking site in the IL-12 receptor beta2 subunit.", "journal": "Biochemical and biophysical research communications", "date": "2003", "authors": "Yamamoto K, Yamaguchi M, Miyasaka N, Miura O", "reference": { "type": "PubMed", "id": "14559241", "url": "https://pubmed.ncbi.nlm.nih.gov/14559241" }, "referenced_glycans": [], "referenced_proteins": [ { 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No inhibition of JAK2 phosphorylation.", "evidence": [ { "database": "UniProtKB", "id": "O14543", "url": "https://www.uniprot.org/uniprotkb/O14543" }, { "database": "PubMed", "id": "10421843", "url": "https://pubmed.ncbi.nlm.nih.gov/10421843" }, { "database": "PubMed", "id": "14559241", "url": "https://pubmed.ncbi.nlm.nih.gov/14559241" } ], "uniprot_canonical_ac": "O14543-1" }, { "start_pos": 71, "end_pos": 71, "sequence_org": "R", "sequence_mut": "K", "comment": "No effect on EPO/LIF-induced signaling suppression. Partial suppression of JAK2 phosphorylation. No effect on binding to JH1. Loss of binding to IL12RB2.", "evidence": [ { "database": "UniProtKB", "id": "O14543", "url": "https://www.uniprot.org/uniprotkb/O14543" }, { "database": "PubMed", "id": "10421843", "url": "https://pubmed.ncbi.nlm.nih.gov/10421843" }, { "database": "PubMed", "id": "14559241", "url": "https://pubmed.ncbi.nlm.nih.gov/14559241" } ], "uniprot_canonical_ac": "O14543-1" }, { "start_pos": 678, "end_pos": 678, "sequence_org": "Y", "sequence_mut": "F", "comment": "No loss of STAT4 activation. No loss of SOCS3 binding.", "evidence": [ { "database": "UniProtKB", "id": "Q99665", "url": "https://www.uniprot.org/uniprotkb/Q99665" }, { "database": "PubMed", "id": "14559241", "url": "https://pubmed.ncbi.nlm.nih.gov/14559241" }, { "database": "PubMed", "id": "9890938", "url": "https://pubmed.ncbi.nlm.nih.gov/9890938" }, { "database": "PubMed", "id": "10198225", "url": "https://pubmed.ncbi.nlm.nih.gov/10198225" } ], "uniprot_canonical_ac": "Q99665-1" }, { "start_pos": 767, "end_pos": 767, "sequence_org": "Y", "sequence_mut": "F", "comment": "No loss of STAT4 activation. No loss of SOCS3 binding.", "evidence": [ { "database": "UniProtKB", "id": "Q99665", "url": "https://www.uniprot.org/uniprotkb/Q99665" }, { "database": "PubMed", "id": "14559241", "url": "https://pubmed.ncbi.nlm.nih.gov/14559241" }, { "database": "PubMed", "id": "9890938", "url": "https://pubmed.ncbi.nlm.nih.gov/9890938" }, { "database": "PubMed", "id": "10198225", "url": "https://pubmed.ncbi.nlm.nih.gov/10198225" } ], "uniprot_canonical_ac": "Q99665-1" }, { "start_pos": 800, "end_pos": 800, "sequence_org": "Y", "sequence_mut": "F", "comment": "Loss of STAT4 activation. Abolishes SOCS3 binding.", "evidence": [ { "database": "UniProtKB", "id": "Q99665", "url": "https://www.uniprot.org/uniprotkb/Q99665" }, { "database": "PubMed", "id": "14559241", "url": "https://pubmed.ncbi.nlm.nih.gov/14559241" }, { "database": "PubMed", "id": "9890938", "url": "https://pubmed.ncbi.nlm.nih.gov/9890938" }, { "database": "PubMed", "id": "10198225", "url": "https://pubmed.ncbi.nlm.nih.gov/10198225" } ], "uniprot_canonical_ac": "Q99665-1" } ], "phosphorylation": [ { "start_pos": 800, "end_pos": 800, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "Q99665", "url": "https://www.uniprot.org/uniprotkb/Q99665" }, { "database": "PubMed", "id": "10415122", "url": "https://pubmed.ncbi.nlm.nih.gov/10415122" }, { "database": "IntAct", "id": "Q99665", "url": "https://www.ebi.ac.uk/intact/interactors/id:Q99665*" }, { "database": "iPTMnet", "id": "Q99665", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q99665" }, { "database": "PubMed", "id": "14559241", "url": "https://pubmed.ncbi.nlm.nih.gov/14559241" }, { "database": "PubMed", "id": "9890938", "url": "https://pubmed.ncbi.nlm.nih.gov/9890938" } ], "site_lbl": "Tyr800", "uniprot_canonical_ac": "Q99665-1" } ], "record_id": "pubmed.14559241", "abstract": "", "glycosylation": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Elevated expression and genetic association links the SOCS3 gene to atopic dermatitis.", "journal": "Am. J. Hum. Genet.", "date": "2006", "authors": "Ekelund E, Saaf A, Tengvall-Linder M, Melen E, Link J, Barker J, Reynolds N J, Meggitt S J, Kere J, Wahlgren C-F, Pershagen G, Wickman M, Nordenskjold M, Kockum I, Bradley M", "reference": { "type": "PubMed", "id": "16685656", "url": "https://pubmed.ncbi.nlm.nih.gov/16685656" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O14543-1", "protein_name": "Suppressor of cytokine signaling 3", "gene_name": "SOCS3", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "O14543", "url": "https://www.uniprot.org/uniprotkb/O14543" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.16685656", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", 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