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"authors": "Rosenthal Kristen M, Edwards Lindsay J, Sabatino Joseph J, Hood Jennifer D, Wasserman Heather A, Zhu Cheng, Evavold Brian D", "reference": { "type": "PubMed", "id": "22412888", "url": "https://pubmed.ncbi.nlm.nih.gov/22412888" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q61885-1", "protein_name": "Myelin-oligodendrocyte glycoprotein", "gene_name": "Mog", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q61885", "url": "https://www.uniprot.org/uniprotkb/Q61885" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.22412888", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", 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"count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Crosstalk between C/EBPbeta phosphorylation, arginine methylation, and SWI/SNF/Mediator implies an indexing transcription factor code.", "journal": "EMBO J.", "date": "2010", "authors": "Kowenz-Leutz E, Pless O, Dittmar G, Knoblich M, Leutz A", "reference": { "type": "PubMed", "id": "20111005", "url": "https://pubmed.ncbi.nlm.nih.gov/20111005" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q7TN02-1", "protein_name": "Mediator of RNA polymerase II transcription subunit 26", "gene_name": "Med26", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P51531-1", "protein_name": "SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2", "gene_name": "SMARCA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12824-1", "protein_name": "SWI/SNF-related matrix-associated 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"count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Discovery of a lectin domain that regulates enzyme activity in mouse N-acetylglucosaminyltransferase-IVa (MGAT4A).", "journal": "Communications biology", "date": "2022", "authors": "Nagae M, Hirata T, Tateno H, Mishra SK, Manabe N, Osada N, Tokoro Y, Yamaguchi Y, Doerksen RJ, Shimizu T, Kizuka Y", "reference": { "type": "PubMed", "id": "35854001", "url": "https://pubmed.ncbi.nlm.nih.gov/35854001" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q812G0-1", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A", "gene_name": "Mgat4a", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q812G0", "url": "https://www.uniprot.org/uniprotkb/Q812G0" } ], "common_name": "Mouse", "glygen_name": "Mouse", 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motility.", "journal": "Biochimica et biophysica acta. Molecular cell research", "date": "2023-10", "authors": "Yang Depeng, Han Fang, Cai Jialing, Sun Handi, Wang Fengyou, Jiang Meiyi, Zhang Mengmeng, Yuan Mengfan, Zhou Wenyang, Li Huaxin, Yang Lijun, Bai Yan, Xiao Lixing, Dong Haiyang, Cheng Qixiang, Mao Haoyu, Zhou Lu, Wang Ruonan, Li Yu, Nie Huan", "reference": { "type": "PubMed", "id": "37295747", "url": "https://pubmed.ncbi.nlm.nih.gov/37295747" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q812G0-1", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A", "gene_name": "Mgat4a", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9UM21-1", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A", "gene_name": "MGAT4A", "tax_name": "Human" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q812G0", "url": "https://www.uniprot.org/uniprotkb/Q812G0" } ], "common_name": "Mouse", 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Meteorin: a secreted protein that regulates glial cell differentiation and promotes axonal extension.", "journal": "The EMBO journal", "date": "2004", "authors": "Nishino J, Yamashita K, Hashiguchi H, Fujii H, Shimazaki T, Hamada H", "reference": { "type": "PubMed", "id": "15085178", "url": "https://pubmed.ncbi.nlm.nih.gov/15085178" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8C1Q4-1", "protein_name": "Meteorin", "gene_name": "Metrn", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9UJH8-1", "protein_name": "Meteorin", "gene_name": "METRN", "tax_name": "Human" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q8C1Q4", "url": "https://www.uniprot.org/uniprotkb/Q8C1Q4" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.15085178", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ 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Mol. Neurosci.", "date": "2009", "authors": "Jorgensen JR, Thompson L, Fjord-Larsen L, Krabbe C, Torp M, Kalkkinen N, Hansen C, Wahlberg L", "reference": { "type": "PubMed", "id": "19259827", "url": "https://pubmed.ncbi.nlm.nih.gov/19259827" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8C1Q4-1", "protein_name": "Meteorin", "gene_name": "Metrn", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q5Q0T9-1", "protein_name": "Meteorin", "gene_name": "Metrn", "tax_name": "Rat" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q8C1Q4", "url": "https://www.uniprot.org/uniprotkb/Q8C1Q4" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.19259827", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Determination of the disulfide structure of murine Meteorin, a neurotrophic factor, by LC-MS and electron transfer dissociation-high-energy collisional dissociation analysis of proteolytic fragments.", "journal": "Anal. 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"count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Interaction between AIF and CHCHD4 Regulates Respiratory Chain Biogenesis.", "journal": "Molecular cell", "date": "2015", "authors": "Hangen E, Feraud O, Lachkar S, Mou H, Doti N, Fimia GM, Lam NV, Zhu C, Godin I, Muller K, Chatzi A, Nuebel E, Ciccosanti F, Flamant S, Benit P, Perfettini JL, Sauvat A, Bennaceur-Griscelli A, Ser-Le Roux K, Gonin P, Tokatlidis K, Rustin P, Piacentini M, Ruvo M, Blomgren K, Kroemer G, Modjtahedi N", "reference": { "type": "PubMed", "id": "26004228", "url": "https://pubmed.ncbi.nlm.nih.gov/26004228" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8VEA4-1", "protein_name": "Mitochondrial intermembrane space import and assembly protein 40", "gene_name": "Chchd4", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "O95831-1", "protein_name": "Apoptosis-inducing factor 1, mitochondrial", "gene_name": "AIFM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Z0X1-1", "protein_name": "Apoptosis-inducing factor 1, mitochondrial", "gene_name": "Aifm1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8N4Q1-1", "protein_name": "Mitochondrial intermembrane space import and assembly protein 40", "gene_name": "CHCHD4", "tax_name": "Human" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q8VEA4", "url": "https://www.uniprot.org/uniprotkb/Q8VEA4" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "mutagenesis": [ { "start_pos": 4, "end_pos": 4, "sequence_org": "C", "sequence_mut": "S", "comment": "No effect on interaction with AIFM1.", "evidence": [ { "database": "UniProtKB", "id": "Q8N4Q1", "url": "https://www.uniprot.org/uniprotkb/Q8N4Q1" }, { "database": "PubMed", "id": "26004228", "url": "https://pubmed.ncbi.nlm.nih.gov/26004228" } ], "uniprot_canonical_ac": "Q8N4Q1-1" }, { "start_pos": 53, "end_pos": 53, "sequence_org": "C", "sequence_mut": "S", "comment": "Does not strongly affect import and stability of CHCHD4 in mitochondria; when associated with S-55. No effect on disulfide exchange with substrate proteins. Does not affect interaction with COA7. No effect on interaction with AIFM1.", "evidence": [ { "database": "UniProtKB", "id": "Q8N4Q1", "url": "https://www.uniprot.org/uniprotkb/Q8N4Q1" }, { "database": "PubMed", "id": "16185709", "url": "https://pubmed.ncbi.nlm.nih.gov/16185709" }, { "database": "PubMed", "id": "19182799", "url": "https://pubmed.ncbi.nlm.nih.gov/19182799" }, { "database": "PubMed", "id": "26387864", "url": "https://pubmed.ncbi.nlm.nih.gov/26387864" }, { "database": "PubMed", "id": "30885959", "url": "https://pubmed.ncbi.nlm.nih.gov/30885959" }, { "database": "PubMed", "id": "26004228", "url": "https://pubmed.ncbi.nlm.nih.gov/26004228" } ], "uniprot_canonical_ac": "Q8N4Q1-1" }, { "start_pos": 53, "end_pos": 55, "sequence_org": "CPC", "sequence_mut": "SPS", "comment": "No effect on interaction with AIFM1. Reduces interaction with TIMCC.", "evidence": [ { "database": "UniProtKB", "id": "Q8N4Q1", "url": "https://www.uniprot.org/uniprotkb/Q8N4Q1" }, { "database": "PubMed", "id": "26004228", "url": "https://pubmed.ncbi.nlm.nih.gov/26004228" }, { "database": "PubMed", "id": "41109133", "url": "https://pubmed.ncbi.nlm.nih.gov/41109133" } ], "uniprot_canonical_ac": "Q8N4Q1-1" }, { "start_pos": 74, "end_pos": 74, "sequence_org": "C", "sequence_mut": "S", "comment": "Affects import and stability of CHCHD4 in mitochondria; when associated with S-64. No effect on interaction with AIFM1.", "evidence": [ { "database": "UniProtKB", "id": "Q8N4Q1", "url": "https://www.uniprot.org/uniprotkb/Q8N4Q1" }, { "database": "PubMed", "id": "16185709", "url": "https://pubmed.ncbi.nlm.nih.gov/16185709" }, { "database": "PubMed", "id": "26004228", "url": "https://pubmed.ncbi.nlm.nih.gov/26004228" } ], "uniprot_canonical_ac": "Q8N4Q1-1" }, { "start_pos": 87, "end_pos": 87, "sequence_org": "C", "sequence_mut": "S", "comment": "Strongly affects import and stability of CHCHD4 in mitochondria; when associated with S-97. No effect on interaction with AIFM1.", "evidence": [ { "database": "UniProtKB", "id": "Q8N4Q1", "url": "https://www.uniprot.org/uniprotkb/Q8N4Q1" }, { "database": "PubMed", "id": "16185709", "url": "https://pubmed.ncbi.nlm.nih.gov/16185709" }, { "database": "PubMed", "id": "26004228", "url": "https://pubmed.ncbi.nlm.nih.gov/26004228" } ], "uniprot_canonical_ac": "Q8N4Q1-1" }, { "start_pos": 97, "end_pos": 97, "sequence_org": "C", "sequence_mut": "S", "comment": "Strongly affects import and stability of CHCHD4 in mitochondria; when associated with S-87. No effect on interaction with AIFM1.", "evidence": [ { "database": "UniProtKB", "id": "Q8N4Q1", "url": "https://www.uniprot.org/uniprotkb/Q8N4Q1" }, { "database": "PubMed", "id": "16185709", "url": "https://pubmed.ncbi.nlm.nih.gov/16185709" }, { "database": "PubMed", "id": "26004228", "url": "https://pubmed.ncbi.nlm.nih.gov/26004228" } ], "uniprot_canonical_ac": "Q8N4Q1-1" } ], "record_id": "pubmed.26004228", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", 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"count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Forkhead Box O3A (FOXO3) and the Mitochondrial Disulfide Relay Carrier (CHCHD4) Regulate p53 Protein Nuclear Activity in Response to Exercise.", "journal": "The Journal of biological chemistry", "date": "2016", "authors": "Zhuang J, Kamp WM, Li J, Liu C, Kang JG, Wang PY, Hwang PM", "reference": { "type": "PubMed", "id": "27687729", "url": "https://pubmed.ncbi.nlm.nih.gov/27687729" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8VEA4-1", "protein_name": "Mitochondrial intermembrane space import and assembly protein 40", "gene_name": "Chchd4", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q8VEA4", "url": "https://www.uniprot.org/uniprotkb/Q8VEA4" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus 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{ "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Haploinsufficiency in the mitochondrial protein CHCHD4 reduces brain injury in a mouse model of neonatal hypoxia-ischemia.", "journal": "Cell death & disease", "date": "2017", "authors": "Sun Y, Li T, Xie C, Xu Y, Zhou K, Rodriguez J, Han W, Wang X, Kroemer G, Modjtahedi N, Blomgren K, Zhu C", "reference": { "type": "PubMed", "id": "28492551", "url": "https://pubmed.ncbi.nlm.nih.gov/28492551" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8VEA4-1", "protein_name": "Mitochondrial intermembrane space import and assembly protein 40", "gene_name": "Chchd4", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q8VEA4", "url": "https://www.uniprot.org/uniprotkb/Q8VEA4" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.28492551", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": 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], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The mitochondrial oxidoreductase CHCHD4 is present in a semi-oxidized state in vivo.", "journal": "Redox biology", "date": "2018", "authors": "Erdogan AJ, Ali M, Habich M, Salscheider SL, Schu L, Petrungaro C, Thomas LW, Ashcroft M, Leichert LI, Roma LP, Riemer J", "reference": { "type": "PubMed", "id": "29704824", "url": "https://pubmed.ncbi.nlm.nih.gov/29704824" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8VEA4-1", "protein_name": "Mitochondrial intermembrane space 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Quantitative Analysis of the Redox-Dependent Interaction of the Apoptosis-Inducing Factor (AIF) with Its Protein Partner.", "journal": "Methods in molecular biology (Clifton, N.J.)", "date": "2021", "authors": "Cocomazzi P, Tarantino D, Mastrangelo E, Aliverti A", "reference": { "type": "PubMed", "id": "33751436", "url": "https://pubmed.ncbi.nlm.nih.gov/33751436" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8VEA4-1", "protein_name": "Mitochondrial intermembrane space import and assembly protein 40", "gene_name": "Chchd4", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q8VEA4", "url": "https://www.uniprot.org/uniprotkb/Q8VEA4" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.33751436", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], 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Biol. Chem.", "date": "2001", "authors": "Takagi M, Sueishi M, Saiwaki T, Kametaka A, Yoneda Y", "reference": { "type": "PubMed", "id": "11342549", "url": "https://pubmed.ncbi.nlm.nih.gov/11342549" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q91VE6-1", "protein_name": "MKI67 FHA domain-interacting nucleolar phosphoprotein", "gene_name": "Nifk", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9BYG3-1", "protein_name": "MKI67 FHA domain-interacting nucleolar phosphoprotein", "gene_name": "NIFK", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46013-1", "protein_name": "Proliferation marker protein Ki-67", "gene_name": "MKI67", "tax_name": "Human" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q91VE6", "url": "https://www.uniprot.org/uniprotkb/Q91VE6" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "mutagenesis": [ { "start_pos": 234, "end_pos": 234, "sequence_org": "T", "sequence_mut": "A", "comment": "Loss of phosphorylation site. 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distribution and calcium homeostasis in mouse oocytes.", "journal": "Developmental biology", "date": "2014", "authors": "Kim B, Zhang X, Kan R, Cohen R, Mukai C, Travis AJ, Coonrod SA", "reference": { "type": "PubMed", "id": "24374158", "url": "https://pubmed.ncbi.nlm.nih.gov/24374158" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9R1M5-1", "protein_name": "NACHT, LRR and PYD domains-containing protein 5", "gene_name": "Nlrp5", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q13509-1", "protein_name": "Tubulin beta-3 chain", "gene_name": "TUBB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P59047-1", "protein_name": "NACHT, LRR and PYD domains-containing protein 5", "gene_name": "NLRP5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11881-1", "protein_name": "Inositol 1,4,5-trisphosphate-gated calcium channel ITPR1", "gene_name": "Itpr1", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { 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granules in the cortex ensures trafficking to the plasma membrane for post-fertilization exocytosis.", "journal": "Nature communications", "date": "2019-05-22", "authors": "Vogt Edgar-John, Tokuhiro Keizo, Guo Min, Dale Ryan, Yang Guanghui, Shin Seung-Wook, Movilla Maria Jimenez, Shroff Hari, Dean Jurrien", "reference": { "type": "PubMed", "id": "31118423", "url": "https://pubmed.ncbi.nlm.nih.gov/31118423" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9R1M5-1", "protein_name": "NACHT, LRR and PYD domains-containing protein 5", "gene_name": "Nlrp5", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8VDD5-1", "protein_name": "Myosin-9", "gene_name": "Myh9", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q9R1M5", "url": "https://www.uniprot.org/uniprotkb/Q9R1M5" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], 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"glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Transcriptional inhibition of REST by NeuroD2 during neuronal differentiation.", "journal": "Molecular and cellular neurosciences", "date": "2010-06", "authors": "Ravanpay Ali C, Hansen Stacey J, Olson James M", "reference": { "type": "PubMed", "id": "20346398", "url": "https://pubmed.ncbi.nlm.nih.gov/20346398" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8CFE3-1", "protein_name": "REST corepressor 1", "gene_name": "Rcor1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P84086-1", "protein_name": "Complexin-2", "gene_name": "Cplx2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q63689-1", "protein_name": "Neurogenic differentiation factor 2", "gene_name": "Neurod2", "tax_name": "Rat" }, { "uniprot_canonical_ac": "Q64318-1", "protein_name": "Zinc finger E-box-binding homeobox 1", "gene_name": "Zeb1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q62414-1", "protein_name": "Neurogenic differentiation factor 2", "gene_name": "Neurod2", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", 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Foxp3+ Treg function and promotes antitumor immunity.", "journal": "The Journal of clinical investigation", "date": "2020", "authors": "Xiong Y, Wang L, Di Giorgio E, Akimova T, Beier UH, Han R, Trevisanut M, Kalin JH, Cole PA, Hancock WW", "reference": { "type": "PubMed", "id": "31917688", "url": "https://pubmed.ncbi.nlm.nih.gov/31917688" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8CFE3-1", "protein_name": "REST corepressor 1", "gene_name": "Rcor1", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q8CFE3", "url": "https://www.uniprot.org/uniprotkb/Q8CFE3" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.31917688", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { 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Neurosci.", "date": "2007", "authors": "Arndt Stephanie, Poser Ina, Moser Markus, Bosserhoff Anja-Katrin", "reference": { "type": "PubMed", "id": "17292623", "url": "https://pubmed.ncbi.nlm.nih.gov/17292623" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8BX46-1", "protein_name": "SKI family transcriptional corepressor 1", "gene_name": "Skor1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q15796-1", "protein_name": "SMAD family member 2", "gene_name": "SMAD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84550-1", "protein_name": "SKI family transcriptional corepressor 1", "gene_name": "SKOR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84022-1", "protein_name": "SMAD family member 3", "gene_name": "SMAD3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15797-1", "protein_name": "SMAD family member 1", "gene_name": "SMAD1", "tax_name": "Human" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { 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kinase-dependent invasive growth of breast cancer cells.", "journal": "Journal of cell science", "date": "2023-02-01", "authors": "Sluimer Lilian M, Bullock Esme, R\u00e4tze Max A K, Enserink Lotte, Overbeeke Celine, Hornsveld Marten, Brunton Valerie G, Derksen Patrick W B, Tavares Sandra", "reference": { "type": "PubMed", "id": "36620935", "url": "https://pubmed.ncbi.nlm.nih.gov/36620935" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8BX46-1", "protein_name": "SKI family transcriptional corepressor 1", "gene_name": "Skor1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P70451-1", "protein_name": "Tyrosine-protein kinase Fer", "gene_name": "Fer", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q8BX46", "url": "https://www.uniprot.org/uniprotkb/Q8BX46" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": 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Reprod. Dev.", "date": "2001", "authors": "Choo K B, Chen H H, Cheng W T, Chang H S, Wang M", "reference": { "type": "PubMed", "id": "11424210", "url": "https://pubmed.ncbi.nlm.nih.gov/11424210" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8VI40-1", "protein_name": "E3 SUMO-protein ligase TRIM60", "gene_name": "Trim60", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P0DMR5-1", "protein_name": "TD and POZ domain-containing protein 1", "gene_name": "Tdpoz1", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q8VI40", "url": "https://www.uniprot.org/uniprotkb/Q8VI40" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.11424210", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { 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approach.", "journal": "Jpn. 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endocrinology and metabolism", "date": "2008", "authors": "Diaczok D, Romero C, Zunich J, Marshall I, Radovick S", "reference": { "type": "PubMed", "id": "18728160", "url": "https://pubmed.ncbi.nlm.nih.gov/18728160" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P80206-1", "protein_name": "Homeobox protein OTX2", "gene_name": "Otx2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P32243-1", "protein_name": "Homeobox protein OTX2", "gene_name": "OTX2", "tax_name": "Human" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "P80206", "url": "https://www.uniprot.org/uniprotkb/P80206" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "mutagenesis": [ { "start_pos": 225, "end_pos": 225, "sequence_org": "N", "sequence_mut": "S", "comment": "Has a dominant negative effect on the proximal promoter region of HESX1 gene; represses reporter expression.", 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[] } ] }, { "title": "Pax-5 encodes the transcription factor BSAP and is expressed in B lymphocytes, the developing CNS, and adult testis.", "journal": "Genes Dev.", "date": "1992", "authors": "Adams B, D\u00f6rfler P, Aguzzi A, Kozmik Z, Urb\u00e1nek P, Maurer-Fogy I, Busslinger M", "reference": { "type": "PubMed", "id": "1516825", "url": "https://pubmed.ncbi.nlm.nih.gov/1516825" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P32114-1", "protein_name": "Paired box protein Pax-2", "gene_name": "Pax2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q00288-1", "protein_name": "Paired box protein Pax-8", "gene_name": "Pax8", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q02548-1", "protein_name": "Paired box protein Pax-5", "gene_name": "PAX5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02650-1", "protein_name": "Paired box protein Pax-5", "gene_name": "Pax5", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, 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"Pax2, a new murine paired-box-containing gene and its expression in the developing excretory system.", "journal": "Development", "date": "1990", "authors": "Dressler GR, Deutsch U, Chowdhury K, Nornes HO, Gruss P", "reference": { "type": "PubMed", "id": "1977574", "url": "https://pubmed.ncbi.nlm.nih.gov/1977574" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P32114-1", "protein_name": "Paired box protein Pax-2", "gene_name": "Pax2", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "P32114", "url": "https://www.uniprot.org/uniprotkb/P32114" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.1977574", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 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"o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Papillorenal syndrome-causing missense mutations in PAX2/Pax2 result in hypomorphic alleles in mouse and human.", "journal": "PLoS genetics", "date": "2010-03-05", "authors": "Alur Ramakrishna P, Vijayasarathy Camasamudram, Brown Jacob D, Mehtani Mohit, Onojafe Ighovie F, Sergeev Yuri V, Boobalan Elangovan, Jones Marypat, Tang Ke, Liu Haiquan, Xia Chun-Hong, Gong Xiaohua, Brooks Brian P", "reference": { "type": "PubMed", "id": "20221250", "url": "https://pubmed.ncbi.nlm.nih.gov/20221250" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P32114-1", "protein_name": "Paired box protein Pax-2", "gene_name": "Pax2", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "P32114", "url": "https://www.uniprot.org/uniprotkb/P32114" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "phosphorylation": [ { "start_pos": 74, "end_pos": 74, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P32114", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P32114" }, { "database": "PubMed", "id": "20221250", "url": "https://pubmed.ncbi.nlm.nih.gov/20221250" } ], "site_lbl": "Thr74", "uniprot_canonical_ac": "P32114-1" } ], "record_id": "pubmed.20221250", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": 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Natl. Acad. Sci. 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Primary sequence of murine Oct-2B cDNA.", "journal": "Dokl. Akad. Nauk SSSR", "date": "1992", "authors": "Stepchenko AG", "reference": { "type": "PubMed", "id": "1425197", "url": "https://pubmed.ncbi.nlm.nih.gov/1425197" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q00196-1", "protein_name": "POU domain, class 2, transcription factor 2", "gene_name": "Pou2f2", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q00196", "url": "https://www.uniprot.org/uniprotkb/Q00196" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.1425197", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", 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"count": 0 } ], "sort_fields": [] } ] }, { "title": "Expression of the Oct-2 transcription factor in mouse mammary gland and cloning and characterization of a novel Oct-2 isoform.", "journal": "Cell and tissue research", "date": "2007-06", "authors": "Dong Bing, Zhao Feng-Qi", "reference": { "type": "PubMed", "id": "17285328", "url": "https://pubmed.ncbi.nlm.nih.gov/17285328" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q00196-1", "protein_name": "POU domain, class 2, transcription factor 2", "gene_name": "Pou2f2", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q00196", "url": "https://www.uniprot.org/uniprotkb/Q00196" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.17285328", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], 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may prevent recombination between POU family genes without interfering with potential POU domain 'shuffling' in evolution.", "journal": "Biol. 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Hoppe-Seyler", "date": "1994", "authors": "Matsuo K, Clay O, K\u00fcnzler P, Georgiev O, Urb\u00e1nek P, Schaffner W", "reference": { "type": "PubMed", "id": "7888080", "url": "https://pubmed.ncbi.nlm.nih.gov/7888080" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q00196-1", "protein_name": "POU domain, class 2, transcription factor 2", "gene_name": "Pou2f2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P09086-1", "protein_name": "POU domain, class 2, transcription factor 2", "gene_name": "POU2F2", "tax_name": "Human" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q00196", "url": "https://www.uniprot.org/uniprotkb/Q00196" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.7888080", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { 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piggyBac transposase domesticated over 500 million years ago and conserved from cephalochordates to humans.", "journal": "Mob. DNA", "date": "2013", "authors": "Pavelitz Thomas, Gray Lucas T, Padilla Stephanie L, Bailey Arnold D, Weiner Alan M", "reference": { "type": "PubMed", "id": "24180413", "url": "https://pubmed.ncbi.nlm.nih.gov/24180413" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "D3YZI9-1", "protein_name": "PiggyBac transposable element-derived protein 5", "gene_name": "Pgbd5", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8N414-1", "protein_name": "PiggyBac transposable element-derived protein 5", "gene_name": "PGBD5", "tax_name": "Human" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "D3YZI9", "url": "https://www.uniprot.org/uniprotkb/D3YZI9" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.24180413", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { 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Zapater Luz Jubierre, Reed Casie, H\u00e9bert Steven, Masilionis Ignas, Chaligne Ronan, Socci Nicholas D, Taylor Michael D, Kleinman Claudia L, Joyner Alexandra L, Raju G Praveen, Kentsis Alex", "reference": { "type": "PubMed", "id": "38517960", "url": "https://pubmed.ncbi.nlm.nih.gov/38517960" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "D3YZI9-1", "protein_name": "PiggyBac transposable element-derived protein 5", "gene_name": "Pgbd5", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8N414-1", "protein_name": "PiggyBac transposable element-derived protein 5", "gene_name": "PGBD5", "tax_name": "Human" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "D3YZI9", "url": "https://www.uniprot.org/uniprotkb/D3YZI9" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.38517960", "abstract": "", "glycosylation": [], "mutagenesis": 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