[ { "title": "Screening of human LPHN3 for variants with a potential impact on ADHD susceptibility.", "journal": "Am. J. Med. Genet. B Neuropsychiatr. Genet.", "date": "2011", "authors": "Domen\u00e9 Sabina, Stanescu Horia, Wallis Deeann, Tinloy Bradford, Pineda Daniel E, Kleta Robert, Arcos-Burgos Mauricio, Roessler Erich, Muenke Maximilian", "reference": { "type": "PubMed", "id": "21184580", "url": "https://pubmed.ncbi.nlm.nih.gov/21184580" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9HAR2-1", "protein_name": "Adhesion G protein-coupled receptor L3", "gene_name": "ADGRL3", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9HAR2", "url": "https://www.uniprot.org/uniprotkb/Q9HAR2" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.21184580", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Structural Basis of Latrophilin-FLRT-UNC5 Interaction in Cell Adhesion.", "journal": "Structure (London, England : 1993)", "date": "2015", "authors": "Lu YC, Nazarko OV, Sando R 3rd, Salzman GS, Li NS, Sudhof TC, Arac D", "reference": { "type": "PubMed", "id": "26235030", "url": "https://pubmed.ncbi.nlm.nih.gov/26235030" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9HAR2-1", "protein_name": "Adhesion G protein-coupled receptor L3", "gene_name": "ADGRL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NZU0-1", "protein_name": "Leucine-rich repeat transmembrane protein FLRT3", "gene_name": "FLRT3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8K1S2-1", "protein_name": "Netrin receptor UNC5D", "gene_name": "Unc5d", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q6UXZ4-1", "protein_name": "Netrin receptor UNC5D", "gene_name": "UNC5D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IZJ1-1", "protein_name": "Netrin receptor UNC5B", "gene_name": "UNC5B", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9HAR2", "url": "https://www.uniprot.org/uniprotkb/Q9HAR2" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 249, "end_pos": 252, "sequence_org": "YHDT", "sequence_mut": "AHAA", "comment": "Strongly reduces FLRT3 binding. Abolishes FLRT3 binding; when associated with A-308.", "evidence": [ { "database": "UniProtKB", "id": "Q9HAR2", "url": "https://www.uniprot.org/uniprotkb/Q9HAR2" }, { "database": "PubMed", "id": "26235030", "url": "https://pubmed.ncbi.nlm.nih.gov/26235030" } ], "uniprot_canonical_ac": "Q9HAR2-1" }, { "start_pos": 308, "end_pos": 308, "sequence_org": "R", "sequence_mut": "A", "comment": "Abolishes FLRT3 binding; when associated with 249-A--A-252.", "evidence": [ { "database": "UniProtKB", "id": "Q9HAR2", "url": "https://www.uniprot.org/uniprotkb/Q9HAR2" }, { "database": "PubMed", "id": "26235030", "url": "https://pubmed.ncbi.nlm.nih.gov/26235030" } ], "uniprot_canonical_ac": "Q9HAR2-1" }, { "start_pos": 181, "end_pos": 181, "sequence_org": "R", "sequence_mut": "A", "comment": "No effect on homodimerization; when associated with A-183.", "evidence": [ { "database": "UniProtKB", "id": "Q9NZU0", "url": "https://www.uniprot.org/uniprotkb/Q9NZU0" }, { "database": "PubMed", "id": "26235030", "url": "https://pubmed.ncbi.nlm.nih.gov/26235030" } ], "uniprot_canonical_ac": "Q9NZU0-1" }, { "start_pos": 181, "end_pos": 181, "sequence_org": "R", "sequence_mut": "N", "comment": "Adds a glycosylation site that strongly reduces homodimerization; when associated with T-183.", "evidence": [ { "database": "UniProtKB", "id": "Q9NZU0", "url": "https://www.uniprot.org/uniprotkb/Q9NZU0" }, { "database": "PubMed", "id": "26235030", "url": "https://pubmed.ncbi.nlm.nih.gov/26235030" } ], "uniprot_canonical_ac": "Q9NZU0-1" }, { "start_pos": 183, "end_pos": 183, "sequence_org": "D", "sequence_mut": "A", "comment": "No effect on homodimerization; when associated with A-181.", "evidence": [ { "database": "UniProtKB", "id": "Q9NZU0", "url": "https://www.uniprot.org/uniprotkb/Q9NZU0" }, { "database": "PubMed", "id": "26235030", "url": "https://pubmed.ncbi.nlm.nih.gov/26235030" } ], "uniprot_canonical_ac": "Q9NZU0-1" }, { "start_pos": 183, "end_pos": 183, "sequence_org": "D", "sequence_mut": "T", "comment": "Adds a glycosylation site that strongly reduces homodimerization; when associated with T-183.", "evidence": [ { "database": "UniProtKB", "id": "Q9NZU0", "url": "https://www.uniprot.org/uniprotkb/Q9NZU0" }, { "database": "PubMed", "id": "26235030", "url": "https://pubmed.ncbi.nlm.nih.gov/26235030" } ], "uniprot_canonical_ac": "Q9NZU0-1" }, { "start_pos": 38, "end_pos": 38, "sequence_org": "D", "sequence_mut": "A", "comment": "Abolishes ADGRL3 binding; when associated with A-43; A-45 and A-47.", "evidence": [ { "database": "UniProtKB", "id": "Q9NZU0", "url": "https://www.uniprot.org/uniprotkb/Q9NZU0" }, { "database": "PubMed", "id": "26235030", "url": "https://pubmed.ncbi.nlm.nih.gov/26235030" } ], "uniprot_canonical_ac": "Q9NZU0-1" }, { "start_pos": 43, "end_pos": 43, "sequence_org": "Y", "sequence_mut": "A", "comment": "Abolishes ADGRL3 binding; when associated with A-64. Abolishes ADGRL3 binding; when associated with A-38; A-43 and A-47.", "evidence": [ { "database": "UniProtKB", "id": "Q9NZU0", "url": "https://www.uniprot.org/uniprotkb/Q9NZU0" }, { "database": "PubMed", "id": "26235030", "url": "https://pubmed.ncbi.nlm.nih.gov/26235030" } ], "uniprot_canonical_ac": "Q9NZU0-1" }, { "start_pos": 45, "end_pos": 45, "sequence_org": "N", "sequence_mut": "A", "comment": "Abolishes ADGRL3 binding; when associated with A-38; A-43 and A-47.", "evidence": [ { "database": "UniProtKB", "id": "Q9NZU0", "url": "https://www.uniprot.org/uniprotkb/Q9NZU0" }, { "database": "PubMed", "id": "26235030", "url": "https://pubmed.ncbi.nlm.nih.gov/26235030" } ], "uniprot_canonical_ac": "Q9NZU0-1" }, { "start_pos": 47, "end_pos": 47, "sequence_org": "R", "sequence_mut": "A", "comment": "Abolishes ADGRL3 binding; when associated with A-38; A-43 and A-45.", "evidence": [ { "database": "UniProtKB", "id": "Q9NZU0", "url": "https://www.uniprot.org/uniprotkb/Q9NZU0" }, { "database": "PubMed", "id": "26235030", "url": "https://pubmed.ncbi.nlm.nih.gov/26235030" } ], "uniprot_canonical_ac": "Q9NZU0-1" }, { "start_pos": 64, "end_pos": 64, "sequence_org": "Y", "sequence_mut": "A", "comment": "Abolishes ADGRL3 binding; when associated with A-43.", "evidence": [ { "database": "UniProtKB", "id": "Q9NZU0", "url": "https://www.uniprot.org/uniprotkb/Q9NZU0" }, { "database": "PubMed", "id": "26235030", "url": "https://pubmed.ncbi.nlm.nih.gov/26235030" } ], "uniprot_canonical_ac": "Q9NZU0-1" }, { "start_pos": 89, "end_pos": 89, "sequence_org": "Y", "sequence_mut": "A", "comment": "Abolishes ADGRL3 binding; when associated with A-91.", "evidence": [ { "database": "UniProtKB", "id": "Q9NZU0", "url": "https://www.uniprot.org/uniprotkb/Q9NZU0" }, { "database": "PubMed", "id": "26235030", "url": "https://pubmed.ncbi.nlm.nih.gov/26235030" } ], "uniprot_canonical_ac": "Q9NZU0-1" }, { "start_pos": 91, "end_pos": 91, "sequence_org": "Y", "sequence_mut": "A", "comment": "Abolishes ADGRL3 binding; when associated with A-89.", "evidence": [ { "database": "UniProtKB", "id": "Q9NZU0", "url": "https://www.uniprot.org/uniprotkb/Q9NZU0" }, { "database": "PubMed", "id": "26235030", "url": "https://pubmed.ncbi.nlm.nih.gov/26235030" } ], "uniprot_canonical_ac": "Q9NZU0-1" } ], "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": { "label": "iCn3D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?bcifid=5CMN&bu=0&command=select+.A:226;+center+selection;+zoom+selection" }, "start_pos": 226, "start_aa": "Asn", "end_pos": 226, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn226", "evidence": [ { "id": "Q9NZU0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/Q9NZU0#ptm_processing" }, { "id": "26235030", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/26235030" }, { "id": "5CMN", "database": "PDB", "url": "https://www.rcsb.org/structure/5CMN" }, { "id": "5CMP", "database": "PDB", "url": "https://www.rcsb.org/structure/5CMP" }, { "id": "6JBU", "database": "PDB", "url": "https://www.rcsb.org/structure/6JBU" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "Q9NZU0-1" } ], "record_id": "pubmed.26235030", "abstract": "", "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_n_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "icn3d_view.label", "icn3d_view.url", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl", "filter_code", "uniprot_canonical_ac" ] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_n_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "icn3d_view.label", "icn3d_view.url", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl", "filter_code", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Convergent selective signaling impairment exposes the pathogenicity of latrophilin-3 missense variants linked to inheritable ADHD susceptibility.", "journal": "Molecular psychiatry", "date": "2022", "authors": "Moreno-Salinas AL, Holleran BJ, Ojeda-Muniz EY, Correoso-Brana KG, Ribalta-Mena S, Ovando-Zambrano JC, Leduc R, Boucard AA", "reference": { "type": "PubMed", "id": "35393556", "url": "https://pubmed.ncbi.nlm.nih.gov/35393556" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9HAR2-1", "protein_name": "Adhesion G protein-coupled receptor L3", "gene_name": "ADGRL3", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9HAR2", "url": "https://www.uniprot.org/uniprotkb/Q9HAR2" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.35393556", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Thwarting of Lphn3 Functions in Cell Motility and Signaling by Cancer-Related GAIN Domain Somatic Mutations.", "journal": "Cells", "date": "2022", "authors": "Avila-Zozaya M, Rodriguez-Hernandez B, Monterrubio-Ledezma F, Cisneros B, Boucard AA", "reference": { "type": "PubMed", "id": "35741042", "url": "https://pubmed.ncbi.nlm.nih.gov/35741042" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9HAR2-1", "protein_name": "Adhesion G protein-coupled receptor L3", "gene_name": "ADGRL3", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9HAR2", "url": "https://www.uniprot.org/uniprotkb/Q9HAR2" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.35741042", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "ADGRL3 genomic variation implicated in neurogenesis and ADHD links functional effects to the incretin polypeptide GIP.", "journal": "Scientific reports", "date": "2022-09-23", "authors": "Vidal Oscar M, V\u00e9lez Jorge I, Arcos-Burgos Mauricio", "reference": { "type": "PubMed", "id": "36151371", "url": "https://pubmed.ncbi.nlm.nih.gov/36151371" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9HAR2-1", "protein_name": "Adhesion G protein-coupled receptor L3", "gene_name": "ADGRL3", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9HAR2", "url": "https://www.uniprot.org/uniprotkb/Q9HAR2" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.36151371", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "ALDH1A3 mutations cause recessive anophthalmia and microphthalmia.", "journal": "American journal of human genetics", "date": "2013", "authors": "Fares-Taie L, Gerber S, Chassaing N, Clayton-Smith J, Hanein S, Silva E, Serey M, Serre V, Gerard X, Baumann C, Plessis G, Demeer B, Bretillon L, Bole C, Nitschke P, Munnich A, Lyonnet S, Calvas P, Kaplan J, Ragge N, Rozet JM", "reference": { "type": "PubMed", "id": "23312594", "url": "https://pubmed.ncbi.nlm.nih.gov/23312594" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P47895-1", "protein_name": "Retinaldehyde dehydrogenase 3", "gene_name": "ALDH1A3", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P47895", "url": "https://www.uniprot.org/uniprotkb/P47895" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.23312594", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "ALDH1A3 loss of function causes bilateral anophthalmia/microphthalmia and hypoplasia of the optic nerve and optic chiasm.", "journal": "Hum. Mol. Genet.", "date": "2013", "authors": "Yahyavi Mani, Abouzeid Hana, Gawdat Ghada, de Preux Anne-Sophie, Xiao Tong, Bardakjian Tanya, Schneider Adele, Choi Alex, Jorgenson Eric, Baier Herwig, El Sada Mohamad, Schorderet Daniel F, Slavotinek Anne M", "reference": { "type": "PubMed", "id": "23591992", "url": "https://pubmed.ncbi.nlm.nih.gov/23591992" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P47895-1", "protein_name": "Retinaldehyde dehydrogenase 3", "gene_name": "ALDH1A3", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P47895", "url": "https://www.uniprot.org/uniprotkb/P47895" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.23591992", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Mutations in ALDH1A3 cause microphthalmia.", "journal": "Clinical genetics", "date": "2013", "authors": "Aldahmesh MA, Khan AO, Hijazi H, Alkuraya FS", "reference": { "type": "PubMed", "id": "23646827", "url": "https://pubmed.ncbi.nlm.nih.gov/23646827" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P47895-1", "protein_name": "Retinaldehyde dehydrogenase 3", "gene_name": "ALDH1A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H4F8-1", "protein_name": "SPARC-related modular calcium-binding protein 1", "gene_name": "SMOC1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P47895", "url": "https://www.uniprot.org/uniprotkb/P47895" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.23646827", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A missense mutation in ALDH1A3 causes isolated microphthalmia/anophthalmia in nine individuals from an inbred Muslim kindred.", "journal": "European journal of human genetics : EJHG", "date": "2014", "authors": "Mory A, Ruiz FX, Dagan E, Yakovtseva EA, Kurolap A, Pares X, Farres J, Gershoni-Baruch R", "reference": { "type": "PubMed", "id": "23881059", "url": "https://pubmed.ncbi.nlm.nih.gov/23881059" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P47895-1", "protein_name": "Retinaldehyde dehydrogenase 3", "gene_name": "ALDH1A3", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P47895", "url": "https://www.uniprot.org/uniprotkb/P47895" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.23881059", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A homozygous mutation in a consanguineous family consolidates the role of ALDH1A3 in autosomal recessive microphthalmia.", "journal": "Clinical genetics", "date": "2014", "authors": "Roos L, Fang M, Dali C, Jensen H, Christoffersen N, Wu B, Zhang J, Xu R, Harris P, Xu X, Gronskov K, Tumer Z", "reference": { "type": "PubMed", "id": "24024553", "url": "https://pubmed.ncbi.nlm.nih.gov/24024553" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P47895-1", "protein_name": "Retinaldehyde dehydrogenase 3", "gene_name": "ALDH1A3", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P47895", "url": "https://www.uniprot.org/uniprotkb/P47895" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.24024553", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Novel splice-site and missense mutations in the ALDH1A3 gene underlying autosomal recessive anophthalmia/microphthalmia.", "journal": "The British journal of ophthalmology", "date": "2014", "authors": "Semerci CN, Kalay E, Yildirim C, Dincer T, Olmez A, Toraman B, Kocyigit A, Bulgu Y, Okur V, Satiroglu-Tufan L, Akarsu NA", "reference": { "type": "PubMed", "id": "24568872", "url": "https://pubmed.ncbi.nlm.nih.gov/24568872" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P47895-1", "protein_name": "Retinaldehyde dehydrogenase 3", "gene_name": "ALDH1A3", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P47895", "url": "https://www.uniprot.org/uniprotkb/P47895" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.24568872", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Mutations in ALDH1A3 represent a frequent cause of microphthalmia/anophthalmia in consanguineous families.", "journal": "Human mutation", "date": "2014", "authors": "Abouzeid H, Favez T, Schmid A, Agosti C, Youssef M, Marzouk I, El Shakankiry N, Bayoumi N, Munier FL, Schorderet DF", "reference": { "type": "PubMed", "id": "24777706", "url": "https://pubmed.ncbi.nlm.nih.gov/24777706" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P47895-1", "protein_name": "Retinaldehyde dehydrogenase 3", "gene_name": "ALDH1A3", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P47895", "url": "https://www.uniprot.org/uniprotkb/P47895" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.24777706", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Crystal structure of human aldehyde dehydrogenase 1A3 complexed with NAD(+) and retinoic acid.", "journal": "Scientific reports", "date": "2016", "authors": "Moretti A, Li J, Donini S, Sobol RW, Rizzi M, Garavaglia S", "reference": { "type": "PubMed", "id": "27759097", "url": "https://pubmed.ncbi.nlm.nih.gov/27759097" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P47895-1", "protein_name": "Retinaldehyde dehydrogenase 3", "gene_name": "ALDH1A3", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P47895", "url": "https://www.uniprot.org/uniprotkb/P47895" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.27759097", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Clinical and genetic analysis further delineates the phenotypic spectrum of ALDH1A3-related anophthalmia and microphthalmia.", "journal": "European journal of human genetics : EJHG", "date": "2023-10", "authors": "Kesim Yesim, Ceroni Fabiola, Dami\u00e1n Alejandra, Blanco-Kelly Fiona, Ayuso Carmen, Williamson Kathy, Paquis-Flucklinger V\u00e9ronique, Bax Dorine A, Plaisanci\u00e9 Julie, Rieubland Claudine, Chamlal Mostafa, Cort\u00f3n Marta, Chassaing Nicolas, Calvas Patrick, Ragge Nicola K", "reference": { "type": "PubMed", "id": "36997679", "url": "https://pubmed.ncbi.nlm.nih.gov/36997679" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P47895-1", "protein_name": "Retinaldehyde dehydrogenase 3", "gene_name": "ALDH1A3", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P47895", "url": "https://www.uniprot.org/uniprotkb/P47895" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.36997679", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "METTL3-mediated ALDH m6A methylation regulates the malignant behavior of BMI1+ HNSCC stem cells.", "journal": "Oral diseases", "date": "2024-04", "authors": "Chen Zhi, Chen Jie, Xu Xiaohong, Li Qiuli, Zhang Caihua, Li Shuai, Liu Lianlian, Cao Congyuan, Chen Demeng, He Qianting", "reference": { "type": "PubMed", "id": "37249063", "url": "https://pubmed.ncbi.nlm.nih.gov/37249063" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P47895-1", "protein_name": "Retinaldehyde dehydrogenase 3", "gene_name": "ALDH1A3", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P47895", "url": "https://www.uniprot.org/uniprotkb/P47895" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.37249063", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "ALDH1A3 promotes invasion and metastasis in triple-negative breast cancer by regulating the plasminogen activation pathway.", "journal": "Molecular oncology", "date": "2024-01", "authors": "Bharadwaj Alamelu G, McLean Meghan E, Dahn Margaret L, Cahill Hannah F, Wasson Marie-Claire D, Arun Raj Pranap, Walker Olivia L, Cruickshank Brianne M, Fernando Wasundara, Venkatesh Jaganathan, Barnes Penelope J, Bethune Gillian, Knapp Gregory, Helyer Lucy K, Giacomantonio Carman A, Waisman David M, Marcato Paola", "reference": { "type": "PubMed", "id": "37753740", "url": "https://pubmed.ncbi.nlm.nih.gov/37753740" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P47895-1", "protein_name": "Retinaldehyde dehydrogenase 3", "gene_name": "ALDH1A3", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P47895", "url": "https://www.uniprot.org/uniprotkb/P47895" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.37753740", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Enhanced Sensitivity to ALDH1A3-Dependent Ferroptosis in TMZ-Resistant Glioblastoma Cells.", "journal": "Cells", "date": "2023-10-25", "authors": "Wu Yang, Franzmeier Sophie, Liesche-Starnecker Friederike, Schlegel J\u00fcrgen", "reference": { "type": "PubMed", "id": "37947601", "url": "https://pubmed.ncbi.nlm.nih.gov/37947601" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P47895-1", "protein_name": "Retinaldehyde dehydrogenase 3", "gene_name": "ALDH1A3", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P47895", "url": "https://www.uniprot.org/uniprotkb/P47895" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.37947601", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "ALDH1A3 is the switch that determines the balance of ALDH+ and CD24-CD44+ cancer stem cells, EMT-MET, and glucose metabolism in breast cancer.", "journal": "Oncogene", "date": "2024-10", "authors": "Fernando Wasundara, Cruickshank Brianne M, Arun Raj Pranap, MacLean Maya R, Cahill Hannah F, Morales-Quintanilla Fiorella, Dean Cheryl A, Wasson Marie-Claire D, Dahn Margaret L, Coyle Krysta M, Walker Olivia L, Power Coombs Melanie R, Marcato Paola", "reference": { "type": "PubMed", "id": "39251846", "url": "https://pubmed.ncbi.nlm.nih.gov/39251846" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P47895-1", "protein_name": "Retinaldehyde dehydrogenase 3", "gene_name": "ALDH1A3", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P47895", "url": "https://www.uniprot.org/uniprotkb/P47895" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.39251846", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Molecular cloning, genomic organization, and chromosomal localization of an additional human aldehyde dehydrogenase gene, ALDH6.", "journal": "Genomics", "date": "1994", "authors": "Hsu LC, Chang WC, Hiraoka L, Hsieh CL", "reference": { "type": "PubMed", "id": "7698756", "url": "https://pubmed.ncbi.nlm.nih.gov/7698756" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P47895-1", "protein_name": "Retinaldehyde dehydrogenase 3", "gene_name": "ALDH1A3", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P47895", "url": "https://www.uniprot.org/uniprotkb/P47895" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.7698756", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Activation of C3G guanine nucleotide exchange factor for Rap1 by phosphorylation of tyrosine 504.", "journal": "The Journal of biological chemistry", "date": "1999", "authors": "Ichiba T, Hashimoto Y, Nakaya M, Kuraishi Y, Tanaka S, Kurata T, Mochizuki N, Matsuda M", "reference": { "type": "PubMed", "id": "10318861", "url": "https://pubmed.ncbi.nlm.nih.gov/10318861" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13905-1", "protein_name": "Rap guanine nucleotide exchange factor 1", "gene_name": "RAPGEF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13905", "url": "https://www.uniprot.org/uniprotkb/Q13905" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 504, "end_pos": 504, "kinase_uniprot_canonical_ac": "P08631-1", "kinase_gene_name": "HCK", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q13905", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q13905" }, { "database": "PubMed", "id": "10318861", "url": "https://pubmed.ncbi.nlm.nih.gov/10318861" }, { "database": "PubMed", "id": "12734187", "url": "https://pubmed.ncbi.nlm.nih.gov/12734187" }, { "database": "PubMed", "id": "14551197", "url": "https://pubmed.ncbi.nlm.nih.gov/14551197" }, { "database": "PubMed", "id": "24396067", "url": "https://pubmed.ncbi.nlm.nih.gov/24396067" } ], "site_lbl": "Tyr504", "uniprot_canonical_ac": "Q13905-1" }, { "start_pos": 504, "end_pos": 504, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine; by HCK", "evidence": [ { "database": "UniProtKB", "id": "Q13905", "url": "https://www.uniprot.org/uniprotkb/Q13905" }, { "database": "iPTMnet", "id": "Q13905", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q13905" }, { "database": "PubMed", "id": "10318861", "url": "https://pubmed.ncbi.nlm.nih.gov/10318861" }, { "database": "PubMed", "id": "14551197", "url": "https://pubmed.ncbi.nlm.nih.gov/14551197" }, { "database": "PubMed", "id": "15320955", "url": "https://pubmed.ncbi.nlm.nih.gov/15320955" }, { "database": "PubMed", "id": "18809728", "url": "https://pubmed.ncbi.nlm.nih.gov/18809728" }, { "database": "PubMed", "id": "18957052", "url": "https://pubmed.ncbi.nlm.nih.gov/18957052" }, { "database": "PubMed", "id": "20581864", "url": "https://pubmed.ncbi.nlm.nih.gov/20581864" }, { "database": "PubMed", "id": "21876762", "url": "https://pubmed.ncbi.nlm.nih.gov/21876762" }, { "database": "PubMed", "id": "28273099", "url": "https://pubmed.ncbi.nlm.nih.gov/28273099" }, { "database": "PubMed", "id": "30567575", "url": "https://pubmed.ncbi.nlm.nih.gov/30567575" } ], "site_lbl": "Tyr504", "uniprot_canonical_ac": "Q13905-1" } ], "record_id": "pubmed.10318861", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Novel function of Chat in controlling cell adhesion via Cas-Crk-C3G-pathway-mediated Rap1 activation.", "journal": "Journal of cell science", "date": "2002", "authors": "Sakakibara A, Ohba Y, Kurokawa K, Matsuda M, Hattori S", "reference": { "type": "PubMed", "id": "12432078", "url": "https://pubmed.ncbi.nlm.nih.gov/12432078" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13905-1", "protein_name": "Rap guanine nucleotide exchange factor 1", "gene_name": "RAPGEF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P56945-1", "protein_name": "Breast cancer anti-estrogen resistance protein 1", "gene_name": "BCAR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N5H7-1", "protein_name": "SH2 domain-containing protein 3C", "gene_name": "SH2D3C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46108-1", "protein_name": "Adapter molecule crk", "gene_name": "CRK", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13905", "url": "https://www.uniprot.org/uniprotkb/Q13905" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 169, "end_pos": 169, "sequence_org": "W", "sequence_mut": "L", "comment": "Abolishes interaction with DOCK5. Abolishes RAP1 activation.", "evidence": [ { "database": "UniProtKB", "id": "P46108", "url": "https://www.uniprot.org/uniprotkb/P46108" }, { "database": "PubMed", "id": "19004829", "url": "https://pubmed.ncbi.nlm.nih.gov/19004829" }, { "database": "PubMed", "id": "12432078", "url": "https://pubmed.ncbi.nlm.nih.gov/12432078" } ], "uniprot_canonical_ac": "P46108-1" } ], "record_id": "pubmed.12432078", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Src-CrkII-C3G-dependent activation of Rap1 switches growth hormone-stimulated p44/42 MAP kinase and JNK/SAPK activities.", "journal": "The Journal of biological chemistry", "date": "2003", "authors": "Ling L, Zhu T, Lobie PE", "reference": { "type": "PubMed", "id": "12734187", "url": "https://pubmed.ncbi.nlm.nih.gov/12734187" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13905-1", "protein_name": "Rap guanine nucleotide exchange factor 1", "gene_name": "RAPGEF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13905", "url": "https://www.uniprot.org/uniprotkb/Q13905" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 504, "end_pos": 504, "kinase_uniprot_canonical_ac": "P08631-1", "kinase_gene_name": "HCK", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q13905", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q13905" }, { "database": "PubMed", "id": "10318861", "url": "https://pubmed.ncbi.nlm.nih.gov/10318861" }, { "database": "PubMed", "id": "12734187", "url": "https://pubmed.ncbi.nlm.nih.gov/12734187" }, { "database": "PubMed", "id": "14551197", "url": "https://pubmed.ncbi.nlm.nih.gov/14551197" }, { "database": "PubMed", "id": "24396067", "url": "https://pubmed.ncbi.nlm.nih.gov/24396067" } ], "site_lbl": "Tyr504", "uniprot_canonical_ac": "Q13905-1" } ], "record_id": "pubmed.12734187", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Phosphorylated guanine nucleotide exchange factor C3G, induced by pervanadate and Src family kinases localizes to the Golgi and subcortical actin cytoskeleton.", "journal": "BMC cell biology", "date": "2004", "authors": "Radha V, Rajanna A, Swarup G", "reference": { "type": "PubMed", "id": "15320955", "url": "https://pubmed.ncbi.nlm.nih.gov/15320955" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13905-1", "protein_name": "Rap guanine nucleotide exchange factor 1", "gene_name": "RAPGEF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13905", "url": "https://www.uniprot.org/uniprotkb/Q13905" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 504, "end_pos": 504, "kinase_uniprot_canonical_ac": "P12931-1", "kinase_gene_name": "SRC", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q13905", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q13905" }, { "database": "PubMed", "id": "15320955", "url": "https://pubmed.ncbi.nlm.nih.gov/15320955" } ], "site_lbl": "Tyr504", "uniprot_canonical_ac": "Q13905-1" }, { "start_pos": 504, "end_pos": 504, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine; by HCK", "evidence": [ { "database": "UniProtKB", "id": "Q13905", "url": "https://www.uniprot.org/uniprotkb/Q13905" }, { "database": "iPTMnet", "id": "Q13905", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q13905" }, { "database": "PubMed", "id": "10318861", "url": "https://pubmed.ncbi.nlm.nih.gov/10318861" }, { "database": "PubMed", "id": "14551197", "url": "https://pubmed.ncbi.nlm.nih.gov/14551197" }, { "database": "PubMed", "id": "15320955", "url": "https://pubmed.ncbi.nlm.nih.gov/15320955" }, { "database": "PubMed", "id": "18809728", "url": "https://pubmed.ncbi.nlm.nih.gov/18809728" }, { "database": "PubMed", "id": "18957052", "url": "https://pubmed.ncbi.nlm.nih.gov/18957052" }, { "database": "PubMed", "id": "20581864", "url": "https://pubmed.ncbi.nlm.nih.gov/20581864" }, { "database": "PubMed", "id": "21876762", "url": "https://pubmed.ncbi.nlm.nih.gov/21876762" }, { "database": "PubMed", "id": "28273099", "url": "https://pubmed.ncbi.nlm.nih.gov/28273099" }, { "database": "PubMed", "id": "30567575", "url": "https://pubmed.ncbi.nlm.nih.gov/30567575" } ], "site_lbl": "Tyr504", "uniprot_canonical_ac": "Q13905-1" } ], "record_id": "pubmed.15320955", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The WAVE2 complex regulates T cell receptor signaling to integrins via Abl- and CrkL-C3G-mediated activation of Rap1.", "journal": "The Journal of cell biology", "date": "2008-09-22", "authors": "Nolz Jeffrey C, Nacusi Lucas P, Segovis Colin M, Medeiros Ricardo B, Mitchell Jason S, Shimizu Yoji, Billadeau Daniel D", "reference": { "type": "PubMed", "id": "18809728", "url": "https://pubmed.ncbi.nlm.nih.gov/18809728" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13905-1", "protein_name": "Rap guanine nucleotide exchange factor 1", "gene_name": "RAPGEF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13905", "url": "https://www.uniprot.org/uniprotkb/Q13905" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 504, "end_pos": 504, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine; by HCK", "evidence": [ { "database": "UniProtKB", "id": "Q13905", "url": "https://www.uniprot.org/uniprotkb/Q13905" }, { "database": "iPTMnet", "id": "Q13905", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q13905" }, { "database": "PubMed", "id": "10318861", "url": "https://pubmed.ncbi.nlm.nih.gov/10318861" }, { "database": "PubMed", "id": "14551197", "url": "https://pubmed.ncbi.nlm.nih.gov/14551197" }, { "database": "PubMed", "id": "15320955", "url": "https://pubmed.ncbi.nlm.nih.gov/15320955" }, { "database": "PubMed", "id": "18809728", "url": "https://pubmed.ncbi.nlm.nih.gov/18809728" }, { "database": "PubMed", "id": "18957052", "url": "https://pubmed.ncbi.nlm.nih.gov/18957052" }, { "database": "PubMed", "id": "20581864", "url": "https://pubmed.ncbi.nlm.nih.gov/20581864" }, { "database": "PubMed", "id": "21876762", "url": "https://pubmed.ncbi.nlm.nih.gov/21876762" }, { "database": "PubMed", "id": "28273099", "url": "https://pubmed.ncbi.nlm.nih.gov/28273099" }, { "database": "PubMed", "id": "30567575", "url": "https://pubmed.ncbi.nlm.nih.gov/30567575" } ], "site_lbl": "Tyr504", "uniprot_canonical_ac": "Q13905-1" } ], "record_id": "pubmed.18809728", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The guanine nucleotide exchange factor, C3G regulates differentiation and survival of human neuroblastoma cells.", "journal": "Journal of neurochemistry", "date": "2008-12", "authors": "Radha Vegesna, Rajanna Ajumeera, Gupta Rajesh Kumar, Dayma Kunal, Raman Thiagarajan", "reference": { "type": "PubMed", "id": "18957052", "url": "https://pubmed.ncbi.nlm.nih.gov/18957052" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13905-1", "protein_name": "Rap guanine nucleotide exchange factor 1", "gene_name": "RAPGEF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13905", "url": "https://www.uniprot.org/uniprotkb/Q13905" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 504, "end_pos": 504, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine; by HCK", "evidence": [ { "database": "UniProtKB", "id": "Q13905", "url": "https://www.uniprot.org/uniprotkb/Q13905" }, { "database": "iPTMnet", "id": "Q13905", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q13905" }, { "database": "PubMed", "id": "10318861", "url": "https://pubmed.ncbi.nlm.nih.gov/10318861" }, { "database": "PubMed", "id": "14551197", "url": "https://pubmed.ncbi.nlm.nih.gov/14551197" }, { "database": "PubMed", "id": "15320955", "url": "https://pubmed.ncbi.nlm.nih.gov/15320955" }, { "database": "PubMed", "id": "18809728", "url": "https://pubmed.ncbi.nlm.nih.gov/18809728" }, { "database": "PubMed", "id": "18957052", "url": "https://pubmed.ncbi.nlm.nih.gov/18957052" }, { "database": "PubMed", "id": "20581864", "url": "https://pubmed.ncbi.nlm.nih.gov/20581864" }, { "database": "PubMed", "id": "21876762", "url": "https://pubmed.ncbi.nlm.nih.gov/21876762" }, { "database": "PubMed", "id": "28273099", "url": "https://pubmed.ncbi.nlm.nih.gov/28273099" }, { "database": "PubMed", "id": "30567575", "url": "https://pubmed.ncbi.nlm.nih.gov/30567575" } ], "site_lbl": "Tyr504", "uniprot_canonical_ac": "Q13905-1" } ], "record_id": "pubmed.18957052", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "F-actin-binding domain of c-Abl regulates localized phosphorylation of C3G: role of C3G in c-Abl-mediated cell death.", "journal": "Oncogene", "date": "2010", "authors": "Mitra A, Radha V", "reference": { "type": "PubMed", "id": "20581864", "url": "https://pubmed.ncbi.nlm.nih.gov/20581864" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13905-1", "protein_name": "Rap guanine nucleotide exchange factor 1", "gene_name": "RAPGEF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13905", "url": "https://www.uniprot.org/uniprotkb/Q13905" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 504, "end_pos": 504, "kinase_uniprot_canonical_ac": "P00519-1", "kinase_gene_name": "ABL1", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q13905", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q13905" }, { "database": "PubMed", "id": "20581864", "url": "https://pubmed.ncbi.nlm.nih.gov/20581864" } ], "site_lbl": "Tyr504", "uniprot_canonical_ac": "Q13905-1" }, { "start_pos": 504, "end_pos": 504, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine; by HCK", "evidence": [ { "database": "UniProtKB", "id": "Q13905", "url": "https://www.uniprot.org/uniprotkb/Q13905" }, { "database": "iPTMnet", "id": "Q13905", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q13905" }, { "database": "PubMed", "id": "10318861", "url": "https://pubmed.ncbi.nlm.nih.gov/10318861" }, { "database": "PubMed", "id": "14551197", "url": "https://pubmed.ncbi.nlm.nih.gov/14551197" }, { "database": "PubMed", "id": "15320955", "url": "https://pubmed.ncbi.nlm.nih.gov/15320955" }, { "database": "PubMed", "id": "18809728", "url": "https://pubmed.ncbi.nlm.nih.gov/18809728" }, { "database": "PubMed", "id": "18957052", "url": "https://pubmed.ncbi.nlm.nih.gov/18957052" }, { "database": "PubMed", "id": "20581864", "url": "https://pubmed.ncbi.nlm.nih.gov/20581864" }, { "database": "PubMed", "id": "21876762", "url": "https://pubmed.ncbi.nlm.nih.gov/21876762" }, { "database": "PubMed", "id": "28273099", "url": "https://pubmed.ncbi.nlm.nih.gov/28273099" }, { "database": "PubMed", "id": "30567575", "url": "https://pubmed.ncbi.nlm.nih.gov/30567575" } ], "site_lbl": "Tyr504", "uniprot_canonical_ac": "Q13905-1" } ], "record_id": "pubmed.20581864", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "TC-PTP dephosphorylates the guanine nucleotide exchange factor C3G (RapGEF1) and negatively regulates differentiation of human neuroblastoma cells.", "journal": "PloS one", "date": "2011", "authors": "Mitra Aninda, Kalayarasan Srinivasan, Gupta Vijay, Radha Vegesna", "reference": { "type": "PubMed", "id": "21876762", "url": "https://pubmed.ncbi.nlm.nih.gov/21876762" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13905-1", "protein_name": "Rap guanine nucleotide exchange factor 1", "gene_name": "RAPGEF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13905", "url": "https://www.uniprot.org/uniprotkb/Q13905" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 504, "end_pos": 504, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine; by HCK", "evidence": [ { "database": "UniProtKB", "id": "Q13905", "url": "https://www.uniprot.org/uniprotkb/Q13905" }, { "database": "iPTMnet", "id": "Q13905", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q13905" }, { "database": "PubMed", "id": "10318861", "url": "https://pubmed.ncbi.nlm.nih.gov/10318861" }, { "database": "PubMed", "id": "14551197", "url": "https://pubmed.ncbi.nlm.nih.gov/14551197" }, { "database": "PubMed", "id": "15320955", "url": "https://pubmed.ncbi.nlm.nih.gov/15320955" }, { "database": "PubMed", "id": "18809728", "url": "https://pubmed.ncbi.nlm.nih.gov/18809728" }, { "database": "PubMed", "id": "18957052", "url": "https://pubmed.ncbi.nlm.nih.gov/18957052" }, { "database": "PubMed", "id": "20581864", "url": "https://pubmed.ncbi.nlm.nih.gov/20581864" }, { "database": "PubMed", "id": "21876762", "url": "https://pubmed.ncbi.nlm.nih.gov/21876762" }, { "database": "PubMed", "id": "28273099", "url": "https://pubmed.ncbi.nlm.nih.gov/28273099" }, { "database": "PubMed", "id": "30567575", "url": "https://pubmed.ncbi.nlm.nih.gov/30567575" } ], "site_lbl": "Tyr504", "uniprot_canonical_ac": "Q13905-1" } ], "record_id": "pubmed.21876762", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Cytotoxic-T-lymphocyte antigen 4 receptor signaling for lymphocyte adhesion is mediated by C3G and Rap1.", "journal": "Molecular and cellular biology", "date": "2014", "authors": "Kloog Y, Mor A", "reference": { "type": "PubMed", "id": "24396067", "url": "https://pubmed.ncbi.nlm.nih.gov/24396067" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13905-1", "protein_name": "Rap guanine nucleotide exchange factor 1", "gene_name": "RAPGEF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13905", "url": "https://www.uniprot.org/uniprotkb/Q13905" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 504, "end_pos": 504, "kinase_uniprot_canonical_ac": "P08631-1", "kinase_gene_name": "HCK", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q13905", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q13905" }, { "database": "PubMed", "id": "10318861", "url": "https://pubmed.ncbi.nlm.nih.gov/10318861" }, { "database": "PubMed", "id": "12734187", "url": "https://pubmed.ncbi.nlm.nih.gov/12734187" }, { "database": "PubMed", "id": "14551197", "url": "https://pubmed.ncbi.nlm.nih.gov/14551197" }, { "database": "PubMed", "id": "24396067", "url": "https://pubmed.ncbi.nlm.nih.gov/24396067" } ], "site_lbl": "Tyr504", "uniprot_canonical_ac": "Q13905-1" } ], "record_id": "pubmed.24396067", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Dynamin2 controls Rap1 activation and integrin clustering in human T lymphocyte adhesion.", "journal": "PloS one", "date": "2017", "authors": "Eppler FJ, Quast T, Kolanus W", "reference": { "type": "PubMed", "id": "28273099", "url": "https://pubmed.ncbi.nlm.nih.gov/28273099" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13905-1", "protein_name": "Rap guanine nucleotide exchange factor 1", "gene_name": "RAPGEF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13905", "url": "https://www.uniprot.org/uniprotkb/Q13905" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 504, "end_pos": 504, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine; by HCK", "evidence": [ { "database": "UniProtKB", "id": "Q13905", "url": "https://www.uniprot.org/uniprotkb/Q13905" }, { "database": "iPTMnet", "id": "Q13905", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q13905" }, { "database": "PubMed", "id": "10318861", "url": "https://pubmed.ncbi.nlm.nih.gov/10318861" }, { "database": "PubMed", "id": "14551197", "url": "https://pubmed.ncbi.nlm.nih.gov/14551197" }, { "database": "PubMed", "id": "15320955", "url": "https://pubmed.ncbi.nlm.nih.gov/15320955" }, { "database": "PubMed", "id": "18809728", "url": "https://pubmed.ncbi.nlm.nih.gov/18809728" }, { "database": "PubMed", "id": "18957052", "url": "https://pubmed.ncbi.nlm.nih.gov/18957052" }, { "database": "PubMed", "id": "20581864", "url": "https://pubmed.ncbi.nlm.nih.gov/20581864" }, { "database": "PubMed", "id": "21876762", "url": "https://pubmed.ncbi.nlm.nih.gov/21876762" }, { "database": "PubMed", "id": "28273099", "url": "https://pubmed.ncbi.nlm.nih.gov/28273099" }, { "database": "PubMed", "id": "30567575", "url": "https://pubmed.ncbi.nlm.nih.gov/30567575" } ], "site_lbl": "Tyr504", "uniprot_canonical_ac": "Q13905-1" } ], "record_id": "pubmed.28273099", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "C3G, through its GEF activity, induces megakaryocytic differentiation and proplatelet formation.", "journal": "Cell communication and signaling : CCS", "date": "2018", "authors": "Ortiz-Rivero S, Baquero C, Hernandez-Cano L, Roldan-Etcheverry JJ, Gutierrez-Herrero S, Fernandez-Infante C, Martin-Granado V, Anguita E, de Pereda JM, Porras A, Guerrero C", "reference": { "type": "PubMed", "id": "30567575", "url": "https://pubmed.ncbi.nlm.nih.gov/30567575" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13905-1", "protein_name": "Rap guanine nucleotide exchange factor 1", "gene_name": "RAPGEF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13905", "url": "https://www.uniprot.org/uniprotkb/Q13905" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 504, "end_pos": 504, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine; by HCK", "evidence": [ { "database": "UniProtKB", "id": "Q13905", "url": "https://www.uniprot.org/uniprotkb/Q13905" }, { "database": "iPTMnet", "id": "Q13905", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q13905" }, { "database": "PubMed", "id": "10318861", "url": "https://pubmed.ncbi.nlm.nih.gov/10318861" }, { "database": "PubMed", "id": "14551197", "url": "https://pubmed.ncbi.nlm.nih.gov/14551197" }, { "database": "PubMed", "id": "15320955", "url": "https://pubmed.ncbi.nlm.nih.gov/15320955" }, { "database": "PubMed", "id": "18809728", "url": "https://pubmed.ncbi.nlm.nih.gov/18809728" }, { "database": "PubMed", "id": "18957052", "url": "https://pubmed.ncbi.nlm.nih.gov/18957052" }, { "database": "PubMed", "id": "20581864", "url": "https://pubmed.ncbi.nlm.nih.gov/20581864" }, { "database": "PubMed", "id": "21876762", "url": "https://pubmed.ncbi.nlm.nih.gov/21876762" }, { "database": "PubMed", "id": "28273099", "url": "https://pubmed.ncbi.nlm.nih.gov/28273099" }, { "database": "PubMed", "id": "30567575", "url": "https://pubmed.ncbi.nlm.nih.gov/30567575" } ], "site_lbl": "Tyr504", "uniprot_canonical_ac": "Q13905-1" } ], "record_id": "pubmed.30567575", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Complex formation and reciprocal regulation between GSK3beta and C3G.", "journal": "Biochimica et biophysica acta. Molecular cell research", "date": "2021", "authors": "Sriram D, Dayma K, Devi AS, Raghawan AK, Rawat S, Radha V", "reference": { "type": "PubMed", "id": "33450305", "url": "https://pubmed.ncbi.nlm.nih.gov/33450305" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13905-1", "protein_name": "Rap guanine nucleotide exchange factor 1", "gene_name": "RAPGEF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13905", "url": "https://www.uniprot.org/uniprotkb/Q13905" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.33450305", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Experimental Characterization of the Interaction between the N-Terminal SH3 Domain of Crkl and C3G.", "journal": "International journal of molecular sciences", "date": "2021", "authors": "Pagano L, Malagrino F, Nardella C, Gianni S, Toto A", "reference": { "type": "PubMed", "id": "34947971", "url": "https://pubmed.ncbi.nlm.nih.gov/34947971" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13905-1", "protein_name": "Rap guanine nucleotide exchange factor 1", "gene_name": "RAPGEF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13905", "url": "https://www.uniprot.org/uniprotkb/Q13905" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.34947971", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Identification and functional validation of SRC and RAPGEF1 as new direct targets of miR-203, involved in regulation of epidermal homeostasis.", "journal": "Scientific reports", "date": "2023-08-27", "authors": "Golebiewski Christelle, Gastaldi C\u00e9cile, Vieu Diane-Lore, Mari Bernard, Rezzonico Roger, Bernerd Fran\u00e7oise, Marionnet Claire", "reference": { "type": "PubMed", "id": "37635193", "url": "https://pubmed.ncbi.nlm.nih.gov/37635193" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13905-1", "protein_name": "Rap guanine nucleotide exchange factor 1", "gene_name": "RAPGEF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13905", "url": "https://www.uniprot.org/uniprotkb/Q13905" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.37635193", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "C3G, a guanine nucleotide-releasing protein expressed ubiquitously, binds to the Src homology 3 domains of CRK and GRB2/ASH proteins.", "journal": "Proc. Natl. Acad. Sci. U.S.A.", "date": "1994", "authors": "Tanaka S, Morishita T, Hashimoto Y, Hattori S, Nakamura S, Shibuya M, Matuoka K, Takenawa T, Kurata T, Nagashima K, et al.", "reference": { "type": "PubMed", "id": "7512734", "url": "https://pubmed.ncbi.nlm.nih.gov/7512734" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13905-1", "protein_name": "Rap guanine nucleotide exchange factor 1", "gene_name": "RAPGEF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13905", "url": "https://www.uniprot.org/uniprotkb/Q13905" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.7512734", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Dimerization of the docking/adaptor protein HEF1 via a carboxy-terminal helix-loop-helix domain.", "journal": "Exp. Cell Res.", "date": "1999", "authors": "Law SF, Zhang YZ, Fashena SJ, Toby G, Estojak J, Golemis EA", "reference": { "type": "PubMed", "id": "10502414", "url": "https://pubmed.ncbi.nlm.nih.gov/10502414" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P56945-1", "protein_name": "Breast cancer anti-estrogen resistance protein 1", "gene_name": "BCAR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14511-1", "protein_name": "Enhancer of filamentation 1", "gene_name": "NEDD9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02363-1", "protein_name": "DNA-binding protein inhibitor ID-2", "gene_name": "ID2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P56945", "url": "https://www.uniprot.org/uniprotkb/P56945" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.10502414", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Simultaneous assay of Src SH3 and SH2 domain binding using different wavelength fluorescence polarization probes.", "journal": "Analytical biochemistry", "date": "1999-11-01", "authors": "Lynch B A, Minor C, Loiacono K A, van Schravendijk M R, Ram M K, Sundaramoorthi R, Adams S E, Phillips T, Holt D, Rickles R J, MacNeil I A", "reference": { "type": "PubMed", "id": "10542110", "url": "https://pubmed.ncbi.nlm.nih.gov/10542110" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P56945-1", "protein_name": "Breast cancer anti-estrogen resistance protein 1", "gene_name": "BCAR1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P56945", "url": "https://www.uniprot.org/uniprotkb/P56945" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 664, "end_pos": 664, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "IntAct", "id": "P56945", "url": "https://www.ebi.ac.uk/intact/interactors/id:P56945*" }, { "database": "iPTMnet", "id": "P56945", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P56945" }, { "database": "PubMed", "id": "10542110", "url": "https://pubmed.ncbi.nlm.nih.gov/10542110" }, { "database": "PubMed", "id": "9360983", "url": "https://pubmed.ncbi.nlm.nih.gov/9360983" }, { "database": "PRO", "id": "P56945", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=P56945" } ], "site_lbl": "Tyr664", "uniprot_canonical_ac": "P56945-1" } ], "record_id": "pubmed.10542110", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "BCAR1, a human homologue of the adapter protein p130Cas, induces anti-estrogen resistance in breast cancer cells.", "journal": "J. Natl. Cancer Inst.", "date": "2000", "authors": "Brinkman A, van der Flier S, Kok E M, Dorssers L C", "reference": { "type": "PubMed", "id": "10639512", "url": "https://pubmed.ncbi.nlm.nih.gov/10639512" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P56945-1", "protein_name": "Breast cancer anti-estrogen resistance protein 1", "gene_name": "BCAR1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P56945", "url": "https://www.uniprot.org/uniprotkb/P56945" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.10639512", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Structural basis of plasticity in protein tyrosine phosphatase 1B substrate recognition.", "journal": "Biochemistry", "date": "2000-07-18", "authors": "Sarmiento M, Puius Y A, Vetter S W, Keng Y F, Wu L, Zhao Y, Lawrence D S, Almo S C, Zhang Z Y", "reference": { "type": "PubMed", "id": "10889023", "url": "https://pubmed.ncbi.nlm.nih.gov/10889023" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P56945-1", "protein_name": "Breast cancer anti-estrogen resistance protein 1", "gene_name": "BCAR1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P56945", "url": "https://www.uniprot.org/uniprotkb/P56945" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 165, "end_pos": 165, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "IntAct", "id": "P56945", "url": "https://www.ebi.ac.uk/intact/interactors/id:P56945*" }, { "database": "iPTMnet", "id": "P56945", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P56945" }, { "database": "PubMed", "id": "10889023", "url": "https://pubmed.ncbi.nlm.nih.gov/10889023" }, { "database": "PRO", "id": "P56945", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=P56945" } ], "site_lbl": "Tyr165", "uniprot_canonical_ac": "P56945-1" }, { "start_pos": 287, "end_pos": 287, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "IntAct", "id": "P56945", "url": "https://www.ebi.ac.uk/intact/interactors/id:P56945*" }, { "database": "iPTMnet", "id": "P56945", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P56945" }, { "database": "PubMed", "id": "10889023", "url": "https://pubmed.ncbi.nlm.nih.gov/10889023" }, { "database": "PRO", "id": "P56945", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=P56945" } ], "site_lbl": "Tyr287", "uniprot_canonical_ac": "P56945-1" } ], "record_id": "pubmed.10889023", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Extracellular FGF-1 inhibits cytoskeletal organization and promotes fibroblast motility.", "journal": "Growth factors (Chur, Switzerland)", "date": "2000", "authors": "Ding Q, Gladson CL, Guidry CR, Santoro SA, Dickeson SK, Shin JT, Thompson JA", "reference": { "type": "PubMed", "id": "11019781", "url": "https://pubmed.ncbi.nlm.nih.gov/11019781" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P56945-1", "protein_name": "Breast cancer anti-estrogen resistance protein 1", "gene_name": "BCAR1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P56945", "url": "https://www.uniprot.org/uniprotkb/P56945" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 128, "end_pos": 128, "kinase_uniprot_canonical_ac": "P11362-1", "kinase_gene_name": "FGFR1", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P56945", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P56945" }, { "database": "PubMed", "id": "11019781", "url": "https://pubmed.ncbi.nlm.nih.gov/11019781" }, { "database": "PubMed", "id": "12601080", "url": "https://pubmed.ncbi.nlm.nih.gov/12601080" } ], "site_lbl": "Tyr128", "uniprot_canonical_ac": "P56945-1" } ], "record_id": "pubmed.11019781", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "SH2-containing inositol 5'-phosphatase SHIP2 associates with the p130(Cas) adapter protein and regulates cellular adhesion and spreading.", "journal": "Mol. Cell. Biol.", "date": "2001", "authors": "Prasad N, Topping RS, Decker SJ", "reference": { "type": "PubMed", "id": "11158326", "url": "https://pubmed.ncbi.nlm.nih.gov/11158326" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P56945-1", "protein_name": "Breast cancer anti-estrogen resistance protein 1", "gene_name": "BCAR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15357-1", "protein_name": "Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 2", "gene_name": "INPPL1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P56945", "url": "https://www.uniprot.org/uniprotkb/P56945" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 47, "end_pos": 47, "sequence_org": "R", "sequence_mut": "G", "comment": "Abolishes interaction with p130Cas/BCAR1 and its ability to induce increased adhesion. Abolishes phosphorylation upon FCGR2A clustering.", "evidence": [ { "database": "UniProtKB", "id": "O15357", "url": "https://www.uniprot.org/uniprotkb/O15357" }, { "database": "PubMed", "id": "11158326", "url": "https://pubmed.ncbi.nlm.nih.gov/11158326" }, { "database": "PubMed", "id": "12690104", "url": "https://pubmed.ncbi.nlm.nih.gov/12690104" } ], "uniprot_canonical_ac": "O15357-1" } ], "record_id": "pubmed.11158326", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Mechanisms of CAS substrate domain tyrosine phosphorylation by FAK and Src.", "journal": "Molecular and cellular biology", "date": "2001", "authors": "Ruest PJ, Shin NY, Polte TR, Zhang X, Hanks SK", "reference": { "type": "PubMed", "id": "11604500", "url": "https://pubmed.ncbi.nlm.nih.gov/11604500" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P56945-1", "protein_name": "Breast cancer anti-estrogen resistance protein 1", "gene_name": "BCAR1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P56945", "url": "https://www.uniprot.org/uniprotkb/P56945" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 664, "end_pos": 664, "kinase_uniprot_canonical_ac": "P12931-1", "kinase_gene_name": "SRC", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P56945", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P56945" }, { "database": "PubMed", "id": "11604500", "url": "https://pubmed.ncbi.nlm.nih.gov/11604500" } ], "site_lbl": "Tyr664", "uniprot_canonical_ac": "P56945-1" }, { "start_pos": 666, "end_pos": 666, "kinase_uniprot_canonical_ac": "P12931-1", "kinase_gene_name": "SRC", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P56945", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P56945" }, { "database": "PubMed", "id": "11604500", "url": "https://pubmed.ncbi.nlm.nih.gov/11604500" } ], "site_lbl": "Tyr666", "uniprot_canonical_ac": "P56945-1" } ], "record_id": "pubmed.11604500", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A p130Cas tyrosine phosphorylated substrate domain decoy disrupts v-crk signaling.", "journal": "BMC cell biology", "date": "2002", "authors": "Kirsch K, Kensinger M, Hanafusa H, August A", "reference": { "type": "PubMed", "id": "12119061", "url": "https://pubmed.ncbi.nlm.nih.gov/12119061" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P56945-1", "protein_name": "Breast cancer anti-estrogen resistance protein 1", "gene_name": "BCAR1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P56945", "url": "https://www.uniprot.org/uniprotkb/P56945" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 664, "end_pos": 664, "kinase_uniprot_canonical_ac": "Q05397-1", "kinase_gene_name": "PTK2", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P56945", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P56945" }, { "database": "PubMed", "id": "12119061", "url": "https://pubmed.ncbi.nlm.nih.gov/12119061" }, { "database": "PubMed", "id": "9360968", "url": "https://pubmed.ncbi.nlm.nih.gov/9360968" }, { "database": "PubMed", "id": "9360983", "url": "https://pubmed.ncbi.nlm.nih.gov/9360983" } ], "site_lbl": "Tyr664", "uniprot_canonical_ac": "P56945-1" } ], "record_id": "pubmed.12119061", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "p130Cas Couples the tyrosine kinase Bmx/Etk with regulation of the actin cytoskeleton and cell migration.", "journal": "The Journal of biological chemistry", "date": "2003", "authors": "Abassi YA, Rehn M, Ekman N, Alitalo K, Vuori K", "reference": { "type": "PubMed", "id": "12832404", "url": "https://pubmed.ncbi.nlm.nih.gov/12832404" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P56945-1", "protein_name": "Breast cancer anti-estrogen resistance protein 1", "gene_name": "BCAR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51813-1", "protein_name": "Cytoplasmic tyrosine-protein kinase BMX", "gene_name": "BMX", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P56945", "url": "https://www.uniprot.org/uniprotkb/P56945" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.12832404", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Src phosphorylates Cas on tyrosine 253 to promote migration of transformed cells.", "journal": "The Journal of biological chemistry", "date": "2003", "authors": "Goldberg GS, Alexander DB, Pellicena P, Zhang ZY, Tsuda H, Miller WT", "reference": { "type": "PubMed", "id": "12972425", "url": "https://pubmed.ncbi.nlm.nih.gov/12972425" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P56945-1", "protein_name": "Breast cancer anti-estrogen resistance protein 1", "gene_name": "BCAR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q61140-1", "protein_name": "Breast cancer anti-estrogen resistance protein 1", "gene_name": "Bcar1", "tax_name": "Mouse" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P56945", "url": "https://www.uniprot.org/uniprotkb/P56945" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 115, "end_pos": 115, "kinase_uniprot_canonical_ac": "P12931-1", "kinase_gene_name": "SRC", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P56945", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P56945" }, { "database": "PubMed", "id": "12972425", "url": "https://pubmed.ncbi.nlm.nih.gov/12972425" } ], "site_lbl": "Tyr115", "uniprot_canonical_ac": "P56945-1" }, { "start_pos": 165, "end_pos": 165, "kinase_uniprot_canonical_ac": "P12931-1", "kinase_gene_name": "SRC", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P56945", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P56945" }, { "database": "PubMed", "id": "12972425", "url": "https://pubmed.ncbi.nlm.nih.gov/12972425" } ], "site_lbl": "Tyr165", "uniprot_canonical_ac": "P56945-1" }, { "start_pos": 179, "end_pos": 179, "kinase_uniprot_canonical_ac": "P12931-1", "kinase_gene_name": "SRC", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P56945", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P56945" }, { "database": "PubMed", "id": "12972425", "url": "https://pubmed.ncbi.nlm.nih.gov/12972425" } ], "site_lbl": "Tyr179", "uniprot_canonical_ac": "P56945-1" }, { "start_pos": 192, "end_pos": 192, "kinase_uniprot_canonical_ac": "P12931-1", "kinase_gene_name": "SRC", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P56945", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P56945" }, { "database": "PubMed", "id": "12972425", "url": "https://pubmed.ncbi.nlm.nih.gov/12972425" } ], "site_lbl": "Tyr192", "uniprot_canonical_ac": "P56945-1" }, { "start_pos": 234, "end_pos": 234, "kinase_uniprot_canonical_ac": "P12931-1", "kinase_gene_name": "SRC", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P56945", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P56945" }, { "database": "PubMed", "id": "12972425", "url": "https://pubmed.ncbi.nlm.nih.gov/12972425" }, { "database": "PubMed", "id": "17016520", "url": "https://pubmed.ncbi.nlm.nih.gov/17016520" }, { "database": "PubMed", "id": "17389395", "url": "https://pubmed.ncbi.nlm.nih.gov/17389395" } ], "site_lbl": "Tyr234", "uniprot_canonical_ac": "P56945-1" }, { "start_pos": 249, "end_pos": 249, "kinase_uniprot_canonical_ac": "P12931-1", "kinase_gene_name": "SRC", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P56945", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P56945" }, { "database": "PubMed", "id": "12972425", "url": "https://pubmed.ncbi.nlm.nih.gov/12972425" } ], "site_lbl": "Tyr249", "uniprot_canonical_ac": "P56945-1" }, { "start_pos": 267, "end_pos": 267, "kinase_uniprot_canonical_ac": "P12931-1", "kinase_gene_name": "SRC", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P56945", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P56945" }, { "database": "PubMed", "id": "12972425", "url": "https://pubmed.ncbi.nlm.nih.gov/12972425" }, { "database": "PubMed", "id": "17016520", "url": "https://pubmed.ncbi.nlm.nih.gov/17016520" }, { "database": "PubMed", "id": "17389395", "url": "https://pubmed.ncbi.nlm.nih.gov/17389395" } ], "site_lbl": "Tyr267", "uniprot_canonical_ac": "P56945-1" }, { "start_pos": 287, "end_pos": 287, "kinase_uniprot_canonical_ac": "P12931-1", "kinase_gene_name": "SRC", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P56945", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P56945" }, { "database": "PubMed", "id": "12972425", "url": "https://pubmed.ncbi.nlm.nih.gov/12972425" }, { "database": "PubMed", "id": "17016520", "url": "https://pubmed.ncbi.nlm.nih.gov/17016520" } ], "site_lbl": "Tyr287", "uniprot_canonical_ac": "P56945-1" }, { "start_pos": 362, "end_pos": 362, "kinase_uniprot_canonical_ac": "P12931-1", "kinase_gene_name": "SRC", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P56945", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P56945" }, { "database": "PubMed", "id": "12972425", "url": "https://pubmed.ncbi.nlm.nih.gov/12972425" }, { "database": "PubMed", "id": "17016520", "url": "https://pubmed.ncbi.nlm.nih.gov/17016520" }, { "database": "PubMed", "id": "17389395", "url": "https://pubmed.ncbi.nlm.nih.gov/17389395" } ], "site_lbl": "Tyr362", "uniprot_canonical_ac": "P56945-1" }, { "start_pos": 387, "end_pos": 387, "kinase_uniprot_canonical_ac": "P12931-1", "kinase_gene_name": "SRC", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P56945", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P56945" }, { "database": "PubMed", "id": "12972425", "url": "https://pubmed.ncbi.nlm.nih.gov/12972425" }, { "database": "PubMed", "id": "17016520", "url": "https://pubmed.ncbi.nlm.nih.gov/17016520" }, { "database": "PubMed", "id": "17389395", "url": "https://pubmed.ncbi.nlm.nih.gov/17389395" }, { "database": "PubMed", "id": "19901323", "url": "https://pubmed.ncbi.nlm.nih.gov/19901323" } ], "site_lbl": "Tyr387", "uniprot_canonical_ac": "P56945-1" }, { "start_pos": 653, "end_pos": 653, "kinase_uniprot_canonical_ac": "P12931-1", "kinase_gene_name": "SRC", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P56945", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P56945" }, { "database": "PubMed", "id": "12972425", "url": "https://pubmed.ncbi.nlm.nih.gov/12972425" } ], "site_lbl": "Tyr653", "uniprot_canonical_ac": "P56945-1" }, { "start_pos": 119, "end_pos": 119, "kinase_uniprot_canonical_ac": "P05480-2", "kinase_gene_name": "Src", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q61140", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q61140" }, { "database": "PubMed", "id": "12972425", "url": "https://pubmed.ncbi.nlm.nih.gov/12972425" } ], "site_lbl": "Tyr119", "uniprot_canonical_ac": "Q61140-1" }, { "start_pos": 169, "end_pos": 169, "kinase_uniprot_canonical_ac": "P05480-2", "kinase_gene_name": "Src", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q61140", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q61140" }, { "database": "PubMed", "id": "12972425", "url": "https://pubmed.ncbi.nlm.nih.gov/12972425" } ], "site_lbl": "Tyr169", "uniprot_canonical_ac": "Q61140-1" }, { "start_pos": 183, "end_pos": 183, "kinase_uniprot_canonical_ac": "P05480-2", "kinase_gene_name": "Src", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q61140", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q61140" }, { "database": "PubMed", "id": "12972425", "url": "https://pubmed.ncbi.nlm.nih.gov/12972425" } ], "site_lbl": "Tyr183", "uniprot_canonical_ac": "Q61140-1" }, { "start_pos": 196, "end_pos": 196, "kinase_uniprot_canonical_ac": "P05480-2", "kinase_gene_name": "Src", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q61140", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q61140" }, { "database": "PubMed", "id": "12972425", "url": "https://pubmed.ncbi.nlm.nih.gov/12972425" } ], "site_lbl": "Tyr196", "uniprot_canonical_ac": "Q61140-1" }, { "start_pos": 238, "end_pos": 238, "kinase_uniprot_canonical_ac": "P05480-2", "kinase_gene_name": "Src", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q61140", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q61140" }, { "database": "PubMed", "id": "12972425", "url": "https://pubmed.ncbi.nlm.nih.gov/12972425" } ], "site_lbl": "Tyr238", "uniprot_canonical_ac": "Q61140-1" }, { "start_pos": 253, "end_pos": 253, "kinase_uniprot_canonical_ac": "P05480-2", "kinase_gene_name": "Src", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q61140", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q61140" }, { "database": "PubMed", "id": "12972425", "url": "https://pubmed.ncbi.nlm.nih.gov/12972425" } ], "site_lbl": "Tyr253", "uniprot_canonical_ac": "Q61140-1" }, { "start_pos": 271, "end_pos": 271, "kinase_uniprot_canonical_ac": "P05480-2", "kinase_gene_name": "Src", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q61140", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q61140" }, { "database": "PubMed", "id": "12972425", "url": "https://pubmed.ncbi.nlm.nih.gov/12972425" } ], "site_lbl": "Tyr271", "uniprot_canonical_ac": "Q61140-1" }, { "start_pos": 291, "end_pos": 291, "kinase_uniprot_canonical_ac": "P05480-2", "kinase_gene_name": "Src", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q61140", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q61140" }, { "database": "PubMed", "id": "12972425", "url": "https://pubmed.ncbi.nlm.nih.gov/12972425" } ], "site_lbl": "Tyr291", "uniprot_canonical_ac": "Q61140-1" }, { "start_pos": 366, "end_pos": 366, "kinase_uniprot_canonical_ac": "P05480-2", "kinase_gene_name": "Src", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q61140", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q61140" }, { "database": "PubMed", "id": "12972425", "url": "https://pubmed.ncbi.nlm.nih.gov/12972425" } ], "site_lbl": "Tyr366", "uniprot_canonical_ac": "Q61140-1" }, { "start_pos": 376, "end_pos": 376, "kinase_uniprot_canonical_ac": "P05480-2", "kinase_gene_name": "Src", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q61140", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q61140" }, { "database": "PubMed", "id": "12972425", "url": "https://pubmed.ncbi.nlm.nih.gov/12972425" } ], "site_lbl": "Tyr376", "uniprot_canonical_ac": "Q61140-1" }, { "start_pos": 391, "end_pos": 391, "kinase_uniprot_canonical_ac": "P05480-2", "kinase_gene_name": "Src", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q61140", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q61140" }, { "database": "PubMed", "id": "12972425", "url": "https://pubmed.ncbi.nlm.nih.gov/12972425" } ], "site_lbl": "Tyr391", "uniprot_canonical_ac": "Q61140-1" }, { "start_pos": 657, "end_pos": 657, "kinase_uniprot_canonical_ac": "P05480-2", "kinase_gene_name": "Src", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q61140", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q61140" }, { "database": "PubMed", "id": "12972425", "url": "https://pubmed.ncbi.nlm.nih.gov/12972425" } ], "site_lbl": "Tyr657", "uniprot_canonical_ac": "Q61140-1" } ], "record_id": "pubmed.12972425", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 23 }, { "field": "total_sites", "count": 23 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The 1.1 A resolution crystal structure of the p130cas SH3 domain and ramifications for ligand selectivity.", "journal": "J. Mol. Biol.", "date": "2005", "authors": "Wisniewska Magdalena, Bossenmaier Birgit, Georges Guy, Hesse Friederike, Dangl Markus, K\u00fcnkele Klaus-Peter, Ioannidis Ioannis, Huber Robert, Engh Richard A", "reference": { "type": "PubMed", "id": "15784259", "url": "https://pubmed.ncbi.nlm.nih.gov/15784259" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P56945-1", "protein_name": "Breast cancer anti-estrogen resistance protein 1", "gene_name": "BCAR1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P56945", "url": "https://www.uniprot.org/uniprotkb/P56945" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.15784259", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Metastatic properties and genomic amplification of the tyrosine kinase gene ACK1.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2005", "authors": "van der Horst EH, Degenhardt YY, Strelow A, Slavin A, Chinn L, Orf J, Rong M, Li S, See LH, Nguyen KQ, Hoey T, Wesche H, Powers S", "reference": { "type": "PubMed", "id": "16247015", "url": "https://pubmed.ncbi.nlm.nih.gov/16247015" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P56945-1", "protein_name": "Breast cancer anti-estrogen resistance protein 1", "gene_name": "BCAR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07912-1", "protein_name": "Activated CDC42 kinase 1", "gene_name": "TNK2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P56945", "url": "https://www.uniprot.org/uniprotkb/P56945" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 165, "end_pos": 165, "kinase_uniprot_canonical_ac": "Q07912-1", "kinase_gene_name": "TNK2", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P56945", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P56945" }, { "database": "PubMed", "id": "16247015", "url": "https://pubmed.ncbi.nlm.nih.gov/16247015" }, { "database": "PubMed", "id": "17038317", "url": "https://pubmed.ncbi.nlm.nih.gov/17038317" } ], "site_lbl": "Tyr165", "uniprot_canonical_ac": "P56945-1" }, { "start_pos": 249, "end_pos": 249, "kinase_uniprot_canonical_ac": "Q07912-1", "kinase_gene_name": "TNK2", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P56945", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P56945" }, { "database": "PubMed", "id": "16247015", "url": "https://pubmed.ncbi.nlm.nih.gov/16247015" }, { "database": "PubMed", "id": "17038317", "url": "https://pubmed.ncbi.nlm.nih.gov/17038317" } ], "site_lbl": "Tyr249", "uniprot_canonical_ac": "P56945-1" }, { "start_pos": 410, "end_pos": 410, "kinase_uniprot_canonical_ac": "Q07912-1", "kinase_gene_name": "TNK2", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P56945", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P56945" }, { "database": "PubMed", "id": "16247015", "url": "https://pubmed.ncbi.nlm.nih.gov/16247015" }, { "database": "PubMed", "id": "17038317", "url": "https://pubmed.ncbi.nlm.nih.gov/17038317" } ], "site_lbl": "Tyr410", "uniprot_canonical_ac": "P56945-1" } ], "record_id": "pubmed.16247015", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 3 }, { "field": "total_sites", "count": 3 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "AND-34/BCAR3 regulates adhesion-dependent p130Cas serine phosphorylation and breast cancer cell growth pattern.", "journal": "Cellular signalling", "date": "2009", "authors": "Makkinje A, Near RI, Infusini G, Vanden Borre P, Bloom A, Cai D, Costello CE, Lerner A", "reference": { "type": "PubMed", "id": "19454314", "url": "https://pubmed.ncbi.nlm.nih.gov/19454314" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P56945-1", "protein_name": "Breast cancer anti-estrogen resistance protein 1", "gene_name": "BCAR1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P56945", "url": "https://www.uniprot.org/uniprotkb/P56945" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 139, "end_pos": 139, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P56945", "url": "https://www.uniprot.org/uniprotkb/P56945" }, { "database": "PubMed", "id": "20068231", "url": "https://pubmed.ncbi.nlm.nih.gov/20068231" }, { "database": "PubMed", "id": "19454314", "url": "https://pubmed.ncbi.nlm.nih.gov/19454314" }, { "database": "PubMed", "id": "23186163", "url": "https://pubmed.ncbi.nlm.nih.gov/23186163" }, { "database": "PubMed", "id": "18669648", "url": "https://pubmed.ncbi.nlm.nih.gov/18669648" }, { "database": "iPTMnet", "id": "P56945", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P56945" }, { "database": "PubMed", "id": "16964243", "url": "https://pubmed.ncbi.nlm.nih.gov/16964243" } ], "site_lbl": "Ser139", "uniprot_canonical_ac": "P56945-1" }, { "start_pos": 437, "end_pos": 437, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P56945", "url": "https://www.uniprot.org/uniprotkb/P56945" }, { "database": "PubMed", "id": "19454314", "url": "https://pubmed.ncbi.nlm.nih.gov/19454314" }, { "database": "iPTMnet", "id": "P56945", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P56945" } ], "site_lbl": "Ser437", "uniprot_canonical_ac": "P56945-1" }, { "start_pos": 639, "end_pos": 639, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "P56945", "url": "https://www.uniprot.org/uniprotkb/P56945" }, { "database": "PubMed", "id": "23186163", "url": "https://pubmed.ncbi.nlm.nih.gov/23186163" }, { "database": "PubMed", "id": "19454314", "url": "https://pubmed.ncbi.nlm.nih.gov/19454314" }, { "database": "iPTMnet", "id": "P56945", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P56945" }, { "database": "PubMed", "id": "17081983", "url": "https://pubmed.ncbi.nlm.nih.gov/17081983" } ], "site_lbl": "Ser639", "uniprot_canonical_ac": "P56945-1" } ], "record_id": "pubmed.19454314", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 3 }, { "field": "total_sites", "count": 3 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Tyrosine phosphorylation within the SH3 domain regulates CAS subcellular localization, cell migration, and invasiveness.", "journal": "Molecular biology of the cell", "date": "2011", "authors": "Janostiak R, Tolde O, Bruhova Z, Novotny M, Hanks SK, Rosel D, Brabek J", "reference": { "type": "PubMed", "id": "21937722", "url": "https://pubmed.ncbi.nlm.nih.gov/21937722" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P56945-1", "protein_name": "Breast cancer anti-estrogen resistance protein 1", "gene_name": "BCAR1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P56945", "url": "https://www.uniprot.org/uniprotkb/P56945" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 12, "end_pos": 12, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P56945", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P56945" }, { "database": "PubMed", "id": "21937722", "url": "https://pubmed.ncbi.nlm.nih.gov/21937722" }, { "database": "PubMed", "id": "23974298", "url": "https://pubmed.ncbi.nlm.nih.gov/23974298" }, { "database": "PubMed", "id": "24497348", "url": "https://pubmed.ncbi.nlm.nih.gov/24497348" }, { "database": "PubMed", "id": "28808245", "url": "https://pubmed.ncbi.nlm.nih.gov/28808245" } ], "site_lbl": "Tyr12", "uniprot_canonical_ac": "P56945-1" } ], "record_id": "pubmed.21937722", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "NSP-Cas protein structures reveal a promiscuous interaction module in cell signaling.", "journal": "Nature structural & molecular biology", "date": "2011", "authors": "Mace PD, Wallez Y, Dobaczewska MK, Lee JJ, Robinson H, Pasquale EB, Riedl SJ", "reference": { "type": "PubMed", "id": "22081014", "url": "https://pubmed.ncbi.nlm.nih.gov/22081014" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P56945-1", "protein_name": "Breast cancer anti-estrogen resistance protein 1", "gene_name": "BCAR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75815-1", "protein_name": "Breast cancer anti-estrogen resistance protein 3", "gene_name": "BCAR3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N5H7-1", "protein_name": "SH2 domain-containing protein 3C", "gene_name": "SH2D3C", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P56945", "url": "https://www.uniprot.org/uniprotkb/P56945" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 787, "end_pos": 787, "sequence_org": "L", "sequence_mut": "E", "comment": "Weakens interaction with SH2D3C.", "evidence": [ { "database": "UniProtKB", "id": "P56945", "url": "https://www.uniprot.org/uniprotkb/P56945" }, { "database": "PubMed", "id": "22081014", "url": "https://pubmed.ncbi.nlm.nih.gov/22081014" } ], "uniprot_canonical_ac": "P56945-1" }, { "start_pos": 794, "end_pos": 794, "sequence_org": "F", "sequence_mut": "R", "comment": "Weakens interaction with SH2D3C.", "evidence": [ { "database": "UniProtKB", "id": "P56945", "url": "https://www.uniprot.org/uniprotkb/P56945" }, { "database": "PubMed", "id": "22081014", "url": "https://pubmed.ncbi.nlm.nih.gov/22081014" } ], "uniprot_canonical_ac": "P56945-1" }, { "start_pos": 797, "end_pos": 797, "sequence_org": "D", "sequence_mut": "R", "comment": "Weakens interaction with SH2D3C.", "evidence": [ { "database": "UniProtKB", "id": "P56945", "url": "https://www.uniprot.org/uniprotkb/P56945" }, { "database": "PubMed", "id": "22081014", "url": "https://pubmed.ncbi.nlm.nih.gov/22081014" } ], "uniprot_canonical_ac": "P56945-1" }, { "start_pos": 744, "end_pos": 744, "sequence_org": "L", "sequence_mut": "E", "comment": "Weakens interaction with BCAR1.", "evidence": [ { "database": "UniProtKB", "id": "O75815", "url": "https://www.uniprot.org/uniprotkb/O75815" }, { "database": "PubMed", "id": "22081014", "url": "https://pubmed.ncbi.nlm.nih.gov/22081014" } ], "uniprot_canonical_ac": "O75815-1" }, { "start_pos": 748, "end_pos": 748, "sequence_org": "R", "sequence_mut": "A", "comment": "Abolishes interaction with BCAR1 and SRC.", "evidence": [ { "database": "UniProtKB", "id": "O75815", "url": "https://www.uniprot.org/uniprotkb/O75815" }, { "database": "PubMed", "id": "22801373", "url": "https://pubmed.ncbi.nlm.nih.gov/22801373" }, { "database": "PubMed", "id": "22081014", "url": "https://pubmed.ncbi.nlm.nih.gov/22081014" } ], "uniprot_canonical_ac": "O75815-1" } ], "record_id": "pubmed.22081014", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Tyrosine Y189 in the substrate domain of the adhesion docking protein NEDD9 is conserved with p130Cas Y253 and regulates NEDD9-mediated migration and focal adhesion dynamics.", "journal": "PloS one", "date": "2013", "authors": "Baquiran JB, Bradbury P, O'Neill GM", "reference": { "type": "PubMed", "id": "23874939", "url": "https://pubmed.ncbi.nlm.nih.gov/23874939" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P56945-1", "protein_name": "Breast cancer anti-estrogen resistance protein 1", "gene_name": "BCAR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14511-1", "protein_name": "Enhancer of filamentation 1", "gene_name": "NEDD9", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P56945", "url": "https://www.uniprot.org/uniprotkb/P56945" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 249, "end_pos": 249, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine; by ABL1", "evidence": [ { "database": "UniProtKB", "id": "P56945", "url": "https://www.uniprot.org/uniprotkb/P56945" }, { "database": "iPTMnet", "id": "P56945", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P56945" }, { "database": "PubMed", "id": "12601080", "url": "https://pubmed.ncbi.nlm.nih.gov/12601080" }, { "database": "PubMed", "id": "17016520", "url": "https://pubmed.ncbi.nlm.nih.gov/17016520" }, { "database": "PubMed", "id": "19901323", "url": "https://pubmed.ncbi.nlm.nih.gov/19901323" }, { "database": "PubMed", "id": "20068231", "url": "https://pubmed.ncbi.nlm.nih.gov/20068231" }, { "database": "PRO", "id": "P56945", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=P56945" }, { "database": "PubMed", "id": "23874939", "url": "https://pubmed.ncbi.nlm.nih.gov/23874939" }, { "database": "PubMed", "id": "25860930", "url": "https://pubmed.ncbi.nlm.nih.gov/25860930" } ], "site_lbl": "Tyr249", "uniprot_canonical_ac": "P56945-1" }, { "start_pos": 189, "end_pos": 189, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine; by ABL1", "evidence": [ { "database": "UniProtKB", "id": "Q14511", "url": "https://www.uniprot.org/uniprotkb/Q14511" }, { "database": "iPTMnet", "id": "Q14511", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q14511" }, { "database": "PubMed", "id": "12522270", "url": "https://pubmed.ncbi.nlm.nih.gov/12522270" }, { "database": "PubMed", "id": "23874939", "url": "https://pubmed.ncbi.nlm.nih.gov/23874939" }, { "database": "PubMed", "id": "22810897", "url": "https://pubmed.ncbi.nlm.nih.gov/22810897" } ], "site_lbl": "Tyr189", "uniprot_canonical_ac": "Q14511-1" } ], "record_id": "pubmed.23874939", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "CAS directly interacts with vinculin to control mechanosensing and focal adhesion dynamics.", "journal": "Cellular and molecular life sciences : CMLS", "date": "2014", "authors": "Janostiak R, Brabek J, Auernheimer V, Tatarova Z, Lautscham LA, Dey T, Gemperle J, Merkel R, Goldmann WH, Fabry B, Rosel D", "reference": { "type": "PubMed", "id": "23974298", "url": "https://pubmed.ncbi.nlm.nih.gov/23974298" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P56945-1", "protein_name": "Breast cancer anti-estrogen resistance protein 1", "gene_name": "BCAR1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P56945", "url": "https://www.uniprot.org/uniprotkb/P56945" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 12, "end_pos": 12, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P56945", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P56945" }, { "database": "PubMed", "id": "21937722", "url": "https://pubmed.ncbi.nlm.nih.gov/21937722" }, { "database": "PubMed", "id": "23974298", "url": "https://pubmed.ncbi.nlm.nih.gov/23974298" }, { "database": "PubMed", "id": "24497348", "url": "https://pubmed.ncbi.nlm.nih.gov/24497348" }, { "database": "PubMed", "id": "28808245", "url": "https://pubmed.ncbi.nlm.nih.gov/28808245" } ], "site_lbl": "Tyr12", "uniprot_canonical_ac": "P56945-1" }, { "start_pos": 410, "end_pos": 410, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "P56945", "url": "https://www.uniprot.org/uniprotkb/P56945" }, { "database": "iPTMnet", "id": "P56945", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P56945" }, { "database": "PubMed", "id": "12601080", "url": "https://pubmed.ncbi.nlm.nih.gov/12601080" }, { "database": "PubMed", "id": "17016520", "url": "https://pubmed.ncbi.nlm.nih.gov/17016520" }, { "database": "PubMed", "id": "17389395", "url": "https://pubmed.ncbi.nlm.nih.gov/17389395" }, { "database": "PRO", "id": "P56945", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=P56945" }, { "database": "PubMed", "id": "23109808", "url": "https://pubmed.ncbi.nlm.nih.gov/23109808" }, { "database": "PubMed", "id": "23974298", "url": "https://pubmed.ncbi.nlm.nih.gov/23974298" }, { "database": "PubMed", "id": "25860930", "url": "https://pubmed.ncbi.nlm.nih.gov/25860930" }, { "database": "PubMed", "id": "27293031", "url": "https://pubmed.ncbi.nlm.nih.gov/27293031" }, { "database": "PubMed", "id": "28007913", "url": "https://pubmed.ncbi.nlm.nih.gov/28007913" }, { "database": "PubMed", "id": "30639111", "url": "https://pubmed.ncbi.nlm.nih.gov/30639111" }, { "database": "PubMed", "id": "33042270", "url": "https://pubmed.ncbi.nlm.nih.gov/33042270" } ], "site_lbl": "Tyr410", "uniprot_canonical_ac": "P56945-1" } ], "record_id": "pubmed.23974298", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Vinculin-p130Cas interaction is critical for focal adhesion dynamics and mechano-transduction.", "journal": "Cell biology international", "date": "2014", "authors": "Goldmann WH", "reference": { "type": "PubMed", "id": "24497348", "url": "https://pubmed.ncbi.nlm.nih.gov/24497348" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P56945-1", "protein_name": "Breast cancer anti-estrogen resistance protein 1", "gene_name": "BCAR1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P56945", "url": "https://www.uniprot.org/uniprotkb/P56945" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 12, "end_pos": 12, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P56945", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P56945" }, { "database": "PubMed", "id": "21937722", "url": "https://pubmed.ncbi.nlm.nih.gov/21937722" }, { "database": "PubMed", "id": "23974298", "url": "https://pubmed.ncbi.nlm.nih.gov/23974298" }, { "database": "PubMed", "id": "24497348", "url": "https://pubmed.ncbi.nlm.nih.gov/24497348" }, { "database": "PubMed", "id": "28808245", "url": "https://pubmed.ncbi.nlm.nih.gov/28808245" } ], "site_lbl": "Tyr12", "uniprot_canonical_ac": "P56945-1" } ], "record_id": "pubmed.24497348", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "p130Cas/BCAR1 scaffold protein in tissue homeostasis and pathogenesis.", "journal": "Gene", "date": "2015", "authors": "Camacho Leal Mdel P, Sciortino M, Tornillo G, Colombo S, Defilippi P, Cabodi S", "reference": { "type": "PubMed", "id": "25727852", "url": "https://pubmed.ncbi.nlm.nih.gov/25727852" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P56945-1", "protein_name": "Breast cancer anti-estrogen resistance protein 1", "gene_name": "BCAR1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P56945", "url": "https://www.uniprot.org/uniprotkb/P56945" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.25727852", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The proto-oncogene c-Src and its downstream signaling pathways are inhibited by the metastasis suppressor, NDRG1.", "journal": "Oncotarget", "date": "2015", "authors": "Liu W, Yue F, Zheng M, Merlot A, Bae DH, Huang M, Lane D, Jansson P, Lui GY, Richardson V, Sahni S, Kalinowski D, Kovacevic Z, Richardson DR", "reference": { "type": "PubMed", "id": "25860930", "url": "https://pubmed.ncbi.nlm.nih.gov/25860930" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P56945-1", "protein_name": "Breast cancer anti-estrogen resistance protein 1", "gene_name": "BCAR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46108-1", "protein_name": "Adapter molecule crk", "gene_name": "CRK", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P56945", "url": "https://www.uniprot.org/uniprotkb/P56945" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 249, "end_pos": 249, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine; by ABL1", "evidence": [ { "database": "UniProtKB", "id": "P56945", "url": "https://www.uniprot.org/uniprotkb/P56945" }, { "database": "iPTMnet", "id": "P56945", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P56945" }, { "database": "PubMed", "id": "12601080", "url": "https://pubmed.ncbi.nlm.nih.gov/12601080" }, { "database": "PubMed", "id": "17016520", "url": "https://pubmed.ncbi.nlm.nih.gov/17016520" }, { "database": "PubMed", "id": "19901323", "url": "https://pubmed.ncbi.nlm.nih.gov/19901323" }, { "database": "PubMed", "id": "20068231", "url": "https://pubmed.ncbi.nlm.nih.gov/20068231" }, { "database": "PRO", "id": "P56945", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=P56945" }, { "database": "PubMed", "id": "23874939", "url": "https://pubmed.ncbi.nlm.nih.gov/23874939" }, { "database": "PubMed", "id": "25860930", "url": "https://pubmed.ncbi.nlm.nih.gov/25860930" } ], "site_lbl": "Tyr249", "uniprot_canonical_ac": "P56945-1" }, { "start_pos": 410, "end_pos": 410, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "P56945", "url": "https://www.uniprot.org/uniprotkb/P56945" }, { "database": "iPTMnet", "id": "P56945", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P56945" }, { "database": "PubMed", "id": "12601080", "url": "https://pubmed.ncbi.nlm.nih.gov/12601080" }, { "database": "PubMed", "id": "17016520", "url": "https://pubmed.ncbi.nlm.nih.gov/17016520" }, { "database": "PubMed", "id": "17389395", "url": "https://pubmed.ncbi.nlm.nih.gov/17389395" }, { "database": "PRO", "id": "P56945", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=P56945" }, { "database": "PubMed", "id": "23109808", "url": "https://pubmed.ncbi.nlm.nih.gov/23109808" }, { "database": "PubMed", "id": "23974298", "url": "https://pubmed.ncbi.nlm.nih.gov/23974298" }, { "database": "PubMed", "id": "25860930", "url": "https://pubmed.ncbi.nlm.nih.gov/25860930" }, { "database": "PubMed", "id": "27293031", "url": "https://pubmed.ncbi.nlm.nih.gov/27293031" }, { "database": "PubMed", "id": "28007913", "url": "https://pubmed.ncbi.nlm.nih.gov/28007913" }, { "database": "PubMed", "id": "30639111", "url": "https://pubmed.ncbi.nlm.nih.gov/30639111" }, { "database": "PubMed", "id": "33042270", "url": "https://pubmed.ncbi.nlm.nih.gov/33042270" } ], "site_lbl": "Tyr410", "uniprot_canonical_ac": "P56945-1" }, { "start_pos": 221, "end_pos": 221, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine; by ABL1", "evidence": [ { "database": "UniProtKB", "id": "P46108", "url": "https://www.uniprot.org/uniprotkb/P46108" }, { "database": "iPTMnet", "id": "P46108", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P46108" }, { "database": "PubMed", "id": "10595738", "url": "https://pubmed.ncbi.nlm.nih.gov/10595738" }, { "database": "PubMed", "id": "11406630", "url": "https://pubmed.ncbi.nlm.nih.gov/11406630" }, { "database": "PubMed", "id": "11839772", "url": "https://pubmed.ncbi.nlm.nih.gov/11839772" }, { "database": "PubMed", "id": "12198159", "url": "https://pubmed.ncbi.nlm.nih.gov/12198159" }, { "database": "PubMed", "id": "12384576", "url": "https://pubmed.ncbi.nlm.nih.gov/12384576" }, { "database": "PubMed", "id": "12955086", "url": "https://pubmed.ncbi.nlm.nih.gov/12955086" }, { "database": "PubMed", "id": "16267043", "url": "https://pubmed.ncbi.nlm.nih.gov/16267043" }, { "database": "PubMed", "id": "17399949", "url": "https://pubmed.ncbi.nlm.nih.gov/17399949" }, { "database": "PubMed", "id": "17786281", "url": "https://pubmed.ncbi.nlm.nih.gov/17786281" }, { "database": "PubMed", "id": "17875741", "url": "https://pubmed.ncbi.nlm.nih.gov/17875741" }, { "database": "PubMed", "id": "19001122", "url": "https://pubmed.ncbi.nlm.nih.gov/19001122" }, { "database": "PubMed", "id": "21602891", "url": "https://pubmed.ncbi.nlm.nih.gov/21602891" }, { "database": "PubMed", "id": "22848689", "url": "https://pubmed.ncbi.nlm.nih.gov/22848689" }, { "database": "PubMed", "id": "25381819", "url": "https://pubmed.ncbi.nlm.nih.gov/25381819" }, { "database": "PubMed", "id": "25860930", "url": "https://pubmed.ncbi.nlm.nih.gov/25860930" }, { "database": "PubMed", "id": "26656091", "url": "https://pubmed.ncbi.nlm.nih.gov/26656091" }, { "database": "PubMed", "id": "33215807", "url": "https://pubmed.ncbi.nlm.nih.gov/33215807" }, { "database": "PubMed", "id": "8702917", "url": "https://pubmed.ncbi.nlm.nih.gov/8702917" }, { "database": "PubMed", "id": "9642287", "url": "https://pubmed.ncbi.nlm.nih.gov/9642287" }, { "database": "PubMed", "id": "17515907", "url": "https://pubmed.ncbi.nlm.nih.gov/17515907" } ], "site_lbl": "Tyr221", "uniprot_canonical_ac": "P46108-1" } ], "record_id": "pubmed.25860930", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 3 }, { "field": "total_sites", "count": 3 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Imatinib and Nilotinib increase glioblastoma cell invasion via Abl-independent stimulation of p130Cas and FAK signalling.", "journal": "Scientific reports", "date": "2016", "authors": "Frolov A, Evans IM, Li N, Sidlauskas K, Paliashvili K, Lockwood N, Barrett A, Brandner S, Zachary IC, Frankel P", "reference": { "type": "PubMed", "id": "27293031", "url": "https://pubmed.ncbi.nlm.nih.gov/27293031" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P56945-1", "protein_name": "Breast cancer anti-estrogen resistance protein 1", "gene_name": "BCAR1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P56945", "url": "https://www.uniprot.org/uniprotkb/P56945" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 410, "end_pos": 410, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "P56945", "url": "https://www.uniprot.org/uniprotkb/P56945" }, { "database": "iPTMnet", "id": "P56945", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P56945" }, { "database": "PubMed", "id": "12601080", "url": "https://pubmed.ncbi.nlm.nih.gov/12601080" }, { "database": "PubMed", "id": "17016520", "url": "https://pubmed.ncbi.nlm.nih.gov/17016520" }, { "database": "PubMed", "id": "17389395", "url": "https://pubmed.ncbi.nlm.nih.gov/17389395" }, { "database": "PRO", "id": "P56945", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=P56945" }, { "database": "PubMed", "id": "23109808", "url": "https://pubmed.ncbi.nlm.nih.gov/23109808" }, { "database": "PubMed", "id": "23974298", "url": "https://pubmed.ncbi.nlm.nih.gov/23974298" }, { "database": "PubMed", "id": "25860930", "url": "https://pubmed.ncbi.nlm.nih.gov/25860930" }, { "database": "PubMed", "id": "27293031", "url": "https://pubmed.ncbi.nlm.nih.gov/27293031" }, { "database": "PubMed", "id": "28007913", "url": "https://pubmed.ncbi.nlm.nih.gov/28007913" }, { "database": "PubMed", "id": "30639111", "url": "https://pubmed.ncbi.nlm.nih.gov/30639111" }, { "database": "PubMed", "id": "33042270", "url": "https://pubmed.ncbi.nlm.nih.gov/33042270" } ], "site_lbl": "Tyr410", "uniprot_canonical_ac": "P56945-1" } ], "record_id": "pubmed.27293031", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Vascular Endothelial Growth Factor (VEGF) Promotes Assembly of the p130Cas Interactome to Drive Endothelial Chemotactic Signaling and Angiogenesis.", "journal": "Molecular & cellular proteomics : MCP", "date": "2017", "authors": "Evans IM, Kennedy SA, Paliashvili K, Santra T, Yamaji M, Lovering RC, Britton G, Frankel P, Kolch W, Zachary IC", "reference": { "type": "PubMed", "id": "28007913", "url": "https://pubmed.ncbi.nlm.nih.gov/28007913" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P56945-1", "protein_name": "Breast cancer anti-estrogen resistance protein 1", "gene_name": "BCAR1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P56945", "url": "https://www.uniprot.org/uniprotkb/P56945" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 410, "end_pos": 410, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "P56945", "url": "https://www.uniprot.org/uniprotkb/P56945" }, { "database": "iPTMnet", "id": "P56945", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P56945" }, { "database": "PubMed", "id": "12601080", "url": "https://pubmed.ncbi.nlm.nih.gov/12601080" }, { "database": "PubMed", "id": "17016520", "url": "https://pubmed.ncbi.nlm.nih.gov/17016520" }, { "database": "PubMed", "id": "17389395", "url": "https://pubmed.ncbi.nlm.nih.gov/17389395" }, { "database": "PRO", "id": "P56945", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=P56945" }, { "database": "PubMed", "id": "23109808", "url": "https://pubmed.ncbi.nlm.nih.gov/23109808" }, { "database": "PubMed", "id": "23974298", "url": "https://pubmed.ncbi.nlm.nih.gov/23974298" }, { "database": "PubMed", "id": "25860930", "url": "https://pubmed.ncbi.nlm.nih.gov/25860930" }, { "database": "PubMed", "id": "27293031", "url": "https://pubmed.ncbi.nlm.nih.gov/27293031" }, { "database": "PubMed", "id": "28007913", "url": "https://pubmed.ncbi.nlm.nih.gov/28007913" }, { "database": "PubMed", "id": "30639111", "url": "https://pubmed.ncbi.nlm.nih.gov/30639111" }, { "database": "PubMed", "id": "33042270", "url": "https://pubmed.ncbi.nlm.nih.gov/33042270" } ], "site_lbl": "Tyr410", "uniprot_canonical_ac": "P56945-1" } ], "record_id": "pubmed.28007913", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Structural characterization of CAS SH3 domain selectivity and regulation reveals new CAS interaction partners.", "journal": "Scientific reports", "date": "2017", "authors": "Gemperle J, Hexnerova R, Lepsik M, Tesina P, Dibus M, Novotny M, Brabek J, Veverka V, Rosel D", "reference": { "type": "PubMed", "id": "28808245", "url": "https://pubmed.ncbi.nlm.nih.gov/28808245" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P56945-1", "protein_name": "Breast cancer anti-estrogen resistance protein 1", "gene_name": "BCAR1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P56945", "url": "https://www.uniprot.org/uniprotkb/P56945" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 12, "end_pos": 12, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P56945", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P56945" }, { "database": "PubMed", "id": "21937722", "url": "https://pubmed.ncbi.nlm.nih.gov/21937722" }, { "database": "PubMed", "id": "23974298", "url": "https://pubmed.ncbi.nlm.nih.gov/23974298" }, { "database": "PubMed", "id": "24497348", "url": "https://pubmed.ncbi.nlm.nih.gov/24497348" }, { "database": "PubMed", "id": "28808245", "url": "https://pubmed.ncbi.nlm.nih.gov/28808245" } ], "site_lbl": "Tyr12", "uniprot_canonical_ac": "P56945-1" } ], "record_id": "pubmed.28808245", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Filopodome Mapping Identifies p130Cas as a Mechanosensitive Regulator of Filopodia Stability.", "journal": "Current biology : CB", "date": "2019", "authors": "Jacquemet G, Stubb A, Saup R, Miihkinen M, Kremneva E, Hamidi H, Ivaska J", "reference": { "type": "PubMed", "id": "30639111", "url": "https://pubmed.ncbi.nlm.nih.gov/30639111" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P56945-1", "protein_name": "Breast cancer anti-estrogen resistance protein 1", "gene_name": "BCAR1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P56945", "url": "https://www.uniprot.org/uniprotkb/P56945" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 410, "end_pos": 410, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "P56945", "url": "https://www.uniprot.org/uniprotkb/P56945" }, { "database": "iPTMnet", "id": "P56945", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P56945" }, { "database": "PubMed", "id": "12601080", "url": "https://pubmed.ncbi.nlm.nih.gov/12601080" }, { "database": "PubMed", "id": "17016520", "url": "https://pubmed.ncbi.nlm.nih.gov/17016520" }, { "database": "PubMed", "id": "17389395", "url": "https://pubmed.ncbi.nlm.nih.gov/17389395" }, { "database": "PRO", "id": "P56945", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=P56945" }, { "database": "PubMed", "id": "23109808", "url": "https://pubmed.ncbi.nlm.nih.gov/23109808" }, { "database": "PubMed", "id": "23974298", "url": "https://pubmed.ncbi.nlm.nih.gov/23974298" }, { "database": "PubMed", "id": "25860930", "url": "https://pubmed.ncbi.nlm.nih.gov/25860930" }, { "database": "PubMed", "id": "27293031", "url": "https://pubmed.ncbi.nlm.nih.gov/27293031" }, { "database": "PubMed", "id": "28007913", "url": "https://pubmed.ncbi.nlm.nih.gov/28007913" }, { "database": "PubMed", "id": "30639111", "url": "https://pubmed.ncbi.nlm.nih.gov/30639111" }, { "database": "PubMed", "id": "33042270", "url": "https://pubmed.ncbi.nlm.nih.gov/33042270" } ], "site_lbl": "Tyr410", "uniprot_canonical_ac": "P56945-1" } ], "record_id": "pubmed.30639111", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "CSRP2 suppresses colorectal cancer progression via p130Cas/Rac1 axis-meditated ERK, PAK, and HIPPO signaling pathways.", "journal": "Theranostics", "date": "2020", "authors": "Chen L, Long X, Duan S, Liu X, Chen J, Lan J, Liu X, Huang W, Geng J, Zhou J", "reference": { "type": "PubMed", "id": "33042270", "url": "https://pubmed.ncbi.nlm.nih.gov/33042270" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P56945-1", "protein_name": "Breast cancer anti-estrogen resistance protein 1", "gene_name": "BCAR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16527-1", "protein_name": "Cysteine and glycine-rich protein 2", "gene_name": "CSRP2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P56945", "url": "https://www.uniprot.org/uniprotkb/P56945" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 410, "end_pos": 410, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "P56945", "url": "https://www.uniprot.org/uniprotkb/P56945" }, { "database": "iPTMnet", "id": "P56945", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P56945" }, { "database": "PubMed", "id": "12601080", "url": "https://pubmed.ncbi.nlm.nih.gov/12601080" }, { "database": "PubMed", "id": "17016520", "url": "https://pubmed.ncbi.nlm.nih.gov/17016520" }, { "database": "PubMed", "id": "17389395", "url": "https://pubmed.ncbi.nlm.nih.gov/17389395" }, { "database": "PRO", "id": "P56945", "url": "https://proconsortium.org/cgi-bin/entry_pro?id=P56945" }, { "database": "PubMed", "id": "23109808", "url": "https://pubmed.ncbi.nlm.nih.gov/23109808" }, { "database": "PubMed", "id": "23974298", "url": "https://pubmed.ncbi.nlm.nih.gov/23974298" }, { "database": "PubMed", "id": "25860930", "url": "https://pubmed.ncbi.nlm.nih.gov/25860930" }, { "database": "PubMed", "id": "27293031", "url": "https://pubmed.ncbi.nlm.nih.gov/27293031" }, { "database": "PubMed", "id": "28007913", "url": "https://pubmed.ncbi.nlm.nih.gov/28007913" }, { "database": "PubMed", "id": "30639111", "url": "https://pubmed.ncbi.nlm.nih.gov/30639111" }, { "database": "PubMed", "id": "33042270", "url": "https://pubmed.ncbi.nlm.nih.gov/33042270" } ], "site_lbl": "Tyr410", "uniprot_canonical_ac": "P56945-1" } ], "record_id": "pubmed.33042270", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "BTG1 inactivation drives lymphomagenesis and promotes lymphoma dissemination through activation of BCAR1.", "journal": "Blood", "date": "2022-11-14", "authors": "Delage Lorric, Lambert Mireille, Bardel Emilie, Kundlacz Cindy, Chartoire Dimitri, Conchon Axel, Peugnet Anne-Laure, Gorka Lucas, Auberger Patrick, Jacquel Arnaud, Soussain Carole, Destaing Olivier, Delecluse Henri-Jacques, Delecluse Susanne, Merabet Samir, Traverse-Glehen Alexandra, Salles Gilles A, Bachy Emmanuel, Billaud Marc, Ghesquieres Herve, Genestier Laurent, Rouault Jean Pierre, Sujobert Pierre", "reference": { "type": "PubMed", "id": "36375119", "url": "https://pubmed.ncbi.nlm.nih.gov/36375119" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P56945-1", "protein_name": "Breast cancer anti-estrogen resistance protein 1", "gene_name": "BCAR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62324-1", "protein_name": "Protein BTG1", "gene_name": "BTG1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P56945", "url": "https://www.uniprot.org/uniprotkb/P56945" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.36375119", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The interaction of CFLAR with p130Cas promotes cell migration.", "journal": "Biochimica et biophysica acta. Molecular cell research", "date": "2023-02", "authors": "Li Hao, Li Luqi, Qiu Xun, Zhang Jing, Hua Zichun", "reference": { "type": "PubMed", "id": "36400248", "url": "https://pubmed.ncbi.nlm.nih.gov/36400248" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P56945-1", "protein_name": "Breast cancer anti-estrogen resistance protein 1", "gene_name": "BCAR1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P56945", "url": "https://www.uniprot.org/uniprotkb/P56945" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.36400248", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Involvement of p130(Cas) and p105(HEF1), a novel Cas-like docking protein, in a cytoskeleton-dependent signaling pathway initiated by ligation of integrin or antigen receptor on human B cells.", "journal": "J. Biol. Chem.", "date": "1997", "authors": "Manie SN, Beck AR, Astier A, Law SF, Canty T, Hirai H, Druker BJ, Avraham H, Haghayeghi N, Sattler M, Salgia R, Griffin JD, Golemis EA, Freedman AS", "reference": { "type": "PubMed", "id": "9020138", "url": "https://pubmed.ncbi.nlm.nih.gov/9020138" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P56945-1", "protein_name": "Breast cancer anti-estrogen resistance protein 1", "gene_name": "BCAR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46109-1", "protein_name": "Crk-like protein", "gene_name": "CRKL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07948-1", "protein_name": "Tyrosine-protein kinase Lyn", "gene_name": "LYN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14511-1", "protein_name": "Enhancer of filamentation 1", "gene_name": "NEDD9", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P56945", "url": "https://www.uniprot.org/uniprotkb/P56945" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.9020138", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Butylated hydroxyanisole and its metabolite tert-butylhydroquinone differentially regulate mitogen-activated protein kinases. The role of oxidative stress in the activation of mitogen-activated protein kinases by phenolic antioxidants.", "journal": "The Journal of biological chemistry", "date": "1997", "authors": "Yu R, Tan TH, Kong AN", "reference": { "type": "PubMed", "id": "9360968", "url": "https://pubmed.ncbi.nlm.nih.gov/9360968" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P56945-1", "protein_name": "Breast cancer anti-estrogen resistance protein 1", "gene_name": "BCAR1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P56945", "url": "https://www.uniprot.org/uniprotkb/P56945" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 664, "end_pos": 664, "kinase_uniprot_canonical_ac": "Q05397-1", "kinase_gene_name": "PTK2", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P56945", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P56945" }, { "database": "PubMed", "id": "12119061", "url": "https://pubmed.ncbi.nlm.nih.gov/12119061" }, { "database": "PubMed", "id": "9360968", "url": "https://pubmed.ncbi.nlm.nih.gov/9360968" }, { "database": "PubMed", "id": "9360983", "url": "https://pubmed.ncbi.nlm.nih.gov/9360983" } ], "site_lbl": "Tyr664", "uniprot_canonical_ac": "P56945-1" } ], "record_id": "pubmed.9360968", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Translocon-associated protein alpha transcripts are induced by granulocyte-macrophage colony-stimulating factor and exhibit complex alternative polyadenylation.", "journal": "FEBS Lett.", "date": "1999", "authors": "Hirama T, Miller C W, Koeffler H P", "reference": { "type": "PubMed", "id": "10437777", "url": "https://pubmed.ncbi.nlm.nih.gov/10437777" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P43307-1", "protein_name": "Translocon-associated protein subunit alpha", "gene_name": "SSR1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P43307", "url": "https://www.uniprot.org/uniprotkb/P43307" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.10437777", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "HLA-A2 molecules in an antigen-processing mutant cell contain signal sequence-derived peptides.", "journal": "Nature", "date": "1992", "authors": "Wei ML, Cresswell P", "reference": { "type": "PubMed", "id": "1557127", "url": "https://pubmed.ncbi.nlm.nih.gov/1557127" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P43307-1", "protein_name": "Translocon-associated protein subunit alpha", "gene_name": "SSR1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P43307", "url": "https://www.uniprot.org/uniprotkb/P43307" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.1557127", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Palmitoylated calnexin is a key component of the ribosome-translocon complex.", "journal": "EMBO J.", "date": "2012", "authors": "Lakkaraju AK, Abrami L, Lemmin T, Blaskovic S, Kunz B, Kihara A, Dal Peraro M, van der Goot FG", "reference": { "type": "PubMed", "id": "22314232", "url": "https://pubmed.ncbi.nlm.nih.gov/22314232" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P43307-1", "protein_name": "Translocon-associated protein subunit alpha", "gene_name": "SSR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27824-1", "protein_name": "Calnexin", "gene_name": "CANX", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H6R6-1", "protein_name": "Palmitoyltransferase ZDHHC6", "gene_name": "ZDHHC6", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P43307", "url": "https://www.uniprot.org/uniprotkb/P43307" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.22314232", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "RP11156L14.1 regulates SSR1 expression by competitively binding to miR548ao3p in hypopharyngeal squamous cell carcinoma.", "journal": "Oncology reports", "date": "2020", "authors": "Yan J, Wang ZH, Yan Y, Luo HN, Ren XY, Li N, Zheng GX, Hou J", "reference": { "type": "PubMed", "id": "33000261", "url": "https://pubmed.ncbi.nlm.nih.gov/33000261" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P43307-1", "protein_name": "Translocon-associated protein subunit alpha", "gene_name": "SSR1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P43307", "url": "https://www.uniprot.org/uniprotkb/P43307" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.33000261", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Xenobiotic/medium chain fatty acid: CoA ligase - a critical review on its role in fatty acid metabolism and the detoxification of benzoic acid and aspirin.", "journal": "Expert Opin. Drug Metab. Toxicol.", "date": "2016", "authors": "van der Sluis R, Erasmus E", "reference": { "type": "PubMed", "id": "27351777", "url": "https://pubmed.ncbi.nlm.nih.gov/27351777" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q6P461-1", "protein_name": "Acyl-coenzyme A synthetase ACSM6, mitochondrial", "gene_name": "ACSM6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6NUN0-1", "protein_name": "Acyl-coenzyme A synthetase ACSM5, mitochondrial", "gene_name": "ACSM5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0C7M7-1", "protein_name": "Acyl-coenzyme A synthetase ACSM4, mitochondrial", "gene_name": "ACSM4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q68CK6-1", "protein_name": "Acyl-coenzyme A synthetase ACSM2B, mitochondrial", "gene_name": "ACSM2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08AH3-1", "protein_name": "Acyl-coenzyme A synthetase ACSM2A, mitochondrial", "gene_name": "ACSM2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08AH1-1", "protein_name": "Acyl-coenzyme A synthetase ACSM1, mitochondrial", "gene_name": "ACSM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q53FZ2-1", "protein_name": "Acyl-coenzyme A synthetase ACSM3, mitochondrial", "gene_name": "ACSM3", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q6P461", "url": "https://www.uniprot.org/uniprotkb/Q6P461" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.27351777", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Expression of steroid sulfated transporters and 3beta-HSD activity in endometrium of women having polycystic ovary syndrome.", "journal": "Steroids", "date": "2015", "authors": "Plaza-Parrochia F, Poblete C, Gabler F, Carvajal R, Romero C, Valladares L, Vega M", "reference": { "type": "PubMed", "id": "26450365", "url": "https://pubmed.ncbi.nlm.nih.gov/26450365" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9H2F3-1", "protein_name": "3 beta-hydroxysteroid dehydrogenase type 7", "gene_name": "HSD3B7", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9H2F3", "url": "https://www.uniprot.org/uniprotkb/Q9H2F3" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.26450365", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Novel Mutations in the 3beta-hydroxy-5-C27-steroid Dehydrogenase Gene (HSD3B7) in a Patient with Neonatal Cholestasis.", "journal": "Chinese medical journal", "date": "2016", "authors": "Huang HY, Zhou H, Wang H, Chen YX, Fang F", "reference": { "type": "PubMed", "id": "26712441", "url": "https://pubmed.ncbi.nlm.nih.gov/26712441" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9H2F3-1", "protein_name": "3 beta-hydroxysteroid dehydrogenase type 7", "gene_name": "HSD3B7", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9H2F3", "url": "https://www.uniprot.org/uniprotkb/Q9H2F3" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.26712441", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The association between HSD3B7 gene variant and Parkinson's disease in ethnic Chinese.", "journal": "Brain and behavior", "date": "2018", "authors": "Lu ZJ, Wang L, Sun XY, Li JY, Cheng L, Li NN, Peng R", "reference": { "type": "PubMed", "id": "29670816", "url": "https://pubmed.ncbi.nlm.nih.gov/29670816" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9H2F3-1", "protein_name": "3 beta-hydroxysteroid dehydrogenase type 7", "gene_name": "HSD3B7", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9H2F3", "url": "https://www.uniprot.org/uniprotkb/Q9H2F3" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.29670816", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Genetic spectrum and clinical characteristics of 3beta-hydroxy-Delta(5)-C27-steroid oxidoreductase (HSD3B7) deficiency in China.", "journal": "Orphanet journal of rare diseases", "date": "2021", "authors": "Zhao J, Setchell KDR, Gong Y, Sun Y, Zhang P, Heubi JE, Fang L, Lu Y, Xie X, Gong J, Wang JS", "reference": { "type": "PubMed", "id": "34627351", "url": "https://pubmed.ncbi.nlm.nih.gov/34627351" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9H2F3-1", "protein_name": "3 beta-hydroxysteroid dehydrogenase type 7", "gene_name": "HSD3B7", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9H2F3", "url": "https://www.uniprot.org/uniprotkb/Q9H2F3" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.34627351", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Familial giant cell hepatitis associated with synthesis of 3 beta, 7 alpha-dihydroxy-and 3 beta,7 alpha, 12 alpha-trihydroxy-5-cholenoic acids.", "journal": "The Journal of clinical investigation", "date": "1987-04", "authors": "Clayton P T, Leonard J V, Lawson A M, Setchell K D, Andersson S, Egestad B, Sj\u00f6vall J", "reference": { "type": "PubMed", "id": "3470305", "url": "https://pubmed.ncbi.nlm.nih.gov/3470305" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9H2F3-1", "protein_name": "3 beta-hydroxysteroid dehydrogenase type 7", "gene_name": "HSD3B7", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9H2F3", "url": "https://www.uniprot.org/uniprotkb/Q9H2F3" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "snv": [ { "evidence": [ { "id": "rs397514442", "database": "dbSNP", "url": "https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=rs397514442" }, { "id": "11067870", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/11067870" }, { "id": "12679481", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/12679481" }, { "id": "3470305", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/3470305" } ], "glycoeffect": [], "start_pos": 347, "end_pos": 347, "sequence_org": "L", "sequence_mut": "null", "comment": "Germline mutation passed 1 filters: glycogene of type=glycogene, carbohydrate synthesis and metabolism/metabolic enzymes.", "chr_id": "16", "chr_pos": "30988112_30988113", "ref_nt": "l", "alt_nt": "null", "minor_allelic_frequency": "", "site_lbl": "L347", "disease": [ { "disease_id": "DOID:0111071", "recommended_name": { "id": "DOID:0111071", "resource": "Disease Ontology", "url": "https://disease-ontology.org/term/DOID:0111071", "name": "congenital bile acid synthesis defect 1", "description": "A congenital bile acid synthesis defect characterized by progressive cholestatic liver disease, giant cell hepatitis, malabsorption of fat and fat-soluble vitamins, increased serum bilirubin and decreased serum cholesterol that has_material_basis_in homozygous or compound heterozygous mutation in the HSD3B7 gene on chromosome 16p." }, "synonyms": [ { "id": "DOID:0111071", "resource": "Disease Ontology", "url": "https://disease-ontology.org/term/DOID:0111071", "name": "CBAS1", "description": "" }, { "id": "MONDO:0011906", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0011906", "name": "congenital bile acid synthesis defect 1", "description": "Congenital bile acid synthesis defect type 1 (BAS defect type 1) is the most common anomaly of bile acid synthesis characterized by variable manifestations of progressive cholestatic liver disease, and fat malabsorption." }, { "id": "MONDO:0011906", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0011906", "name": "3-beta-hydroxy-delta-5-C27-steroid oxidoreductase deficiency type 1", "description": "" }, { "id": "MONDO:0011906", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0011906", "name": "BASD1", "description": "" }, { "id": "MONDO:0011906", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0011906", "name": "CBAS1", "description": "" }, { "id": "MONDO:0011906", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0011906", "name": "HSD3B7 congenital bile acid synthesis defect", "description": "" }, { "id": "MONDO:0011906", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0011906", "name": "bile acid synthesis defect, congenital, type 1", "description": "" }, { "id": "MONDO:0011906", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0011906", "name": "congenital bile acid synthesis defect 1", "description": "" }, { "id": "MONDO:0011906", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0011906", "name": "congenital bile acid synthesis defect caused by mutation in HSD3B7", "description": "" }, { "id": "MONDO:0011906", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0011906", "name": "congenital bile acid synthesis defect type 1", "description": "" }, { "id": "MONDO:0011906", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0011906", "name": "3-alpha beta-hydroxy-delta-5-C27-steroid oxidoreductase, deficiency of", "description": "" }, { "id": "MONDO:0011906", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0011906", "name": "bile acid synthesis defect, congenital, 1", "description": "" }, { "id": "MONDO:0011906", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0011906", "name": "congenital bile acid synthesis defect, type 1", "description": "" }, { "id": "MIM:607765", "resource": "MIM", "url": "https://www.omim.org/entry/607765", "name": "Congenital bile acid synthesis defect 1", "description": "Congenital bile acid synthesis defect 1" } ], "unlinked_id_list": [], "evidence": [ { "id": "607765", "database": "MIM", "url": "https://www.omim.org/entry/607765" }, { "id": "0111071", "database": "AGR", "url": "https://www.alliancegenome.org/disease/DOID:0111071" } ] } ], "keywords": [ "ebi", "germline", "disease" ], "filter_code": "000000000010000000000.00000000000000.000000000001000000.00001.11.000.000", "uniprot_canonical_ac": "Q9H2F3-1" } ], "record_id": "pubmed.3470305", "abstract": "", "glycosylation": [], "mutagenesis": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "DOCK2 associates with CrkL and regulates Rac1 in human leukemia cell lines.", "journal": "Blood", "date": "2002", "authors": "Nishihara Hiroshi, Maeda Masae, Oda Atsushi, Tsuda Masumi, Sawa Hirofumi, Nagashima Kazuo, Tanaka Shinya", "reference": { "type": "PubMed", "id": "12393632", "url": "https://pubmed.ncbi.nlm.nih.gov/12393632" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P46109-1", "protein_name": "Crk-like protein", "gene_name": "CRKL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92608-1", "protein_name": "Dedicator of cytokinesis protein 2", "gene_name": "DOCK2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15498-1", "protein_name": "Proto-oncogene vav", "gene_name": "VAV1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P46109", "url": "https://www.uniprot.org/uniprotkb/P46109" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.12393632", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A novel FRET-based biosensor for the measurement of BCR-ABL activity and its response to drugs in living cells.", "journal": "Clinical cancer research : an official journal of the American Association for Cancer Research", "date": "2010", "authors": "Mizutani T, Kondo T, Darmanin S, Tsuda M, Tanaka S, Tobiume M, Asaka M, Ohba Y", "reference": { "type": "PubMed", "id": "20670950", "url": "https://pubmed.ncbi.nlm.nih.gov/20670950" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P46109-1", "protein_name": "Crk-like protein", "gene_name": "CRKL", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P46109", "url": "https://www.uniprot.org/uniprotkb/P46109" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 207, "end_pos": 207, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "P46109", "url": "https://www.uniprot.org/uniprotkb/P46109" }, { "database": "PubMed", "id": "15592455", "url": "https://pubmed.ncbi.nlm.nih.gov/15592455" }, { "database": "iPTMnet", "id": "P46109", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P46109" }, { "database": "PubMed", "id": "17016520", "url": "https://pubmed.ncbi.nlm.nih.gov/17016520" }, { "database": "PubMed", "id": "19901323", "url": "https://pubmed.ncbi.nlm.nih.gov/19901323" }, { "database": "PubMed", "id": "20068231", "url": "https://pubmed.ncbi.nlm.nih.gov/20068231" }, { "database": "PubMed", "id": "9053848", "url": "https://pubmed.ncbi.nlm.nih.gov/9053848" }, { "database": "PubMed", "id": "20670950", "url": "https://pubmed.ncbi.nlm.nih.gov/20670950" }, { "database": "PubMed", "id": "22581121", "url": "https://pubmed.ncbi.nlm.nih.gov/22581121" }, { "database": "PubMed", "id": "23318429", "url": "https://pubmed.ncbi.nlm.nih.gov/23318429" }, { "database": "PubMed", "id": "23691243", "url": "https://pubmed.ncbi.nlm.nih.gov/23691243" }, { "database": "PubMed", "id": "27078848", "url": "https://pubmed.ncbi.nlm.nih.gov/27078848" } ], "site_lbl": "Tyr207", "uniprot_canonical_ac": "P46109-1" } ], "record_id": "pubmed.20670950", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "GGA3 functions as a switch to promote Met receptor recycling, essential for sustained ERK and cell migration.", "journal": "Developmental cell", "date": "2011", "authors": "Parachoniak CA, Luo Y, Abella JV, Keen JH, Park M", "reference": { "type": "PubMed", "id": "21664574", "url": "https://pubmed.ncbi.nlm.nih.gov/21664574" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P46109-1", "protein_name": "Crk-like protein", "gene_name": "CRKL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62330-1", "protein_name": "ADP-ribosylation factor 6", "gene_name": "ARF6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61018-1", "protein_name": "Ras-related protein Rab-4B", "gene_name": "RAB4B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20338-1", "protein_name": "Ras-related protein Rab-4A", "gene_name": "RAB4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NZ52-1", "protein_name": "ADP-ribosylation factor-binding protein GGA3", "gene_name": "GGA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14210-1", "protein_name": "Hepatocyte growth factor", "gene_name": "HGF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13480-1", "protein_name": "GRB2-associated-binding protein 1", "gene_name": "GAB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08581-1", "protein_name": "Hepatocyte growth factor receptor", "gene_name": "MET", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46108-1", "protein_name": "Adapter molecule crk", "gene_name": "CRK", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P46109", "url": "https://www.uniprot.org/uniprotkb/P46109" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.21664574", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 9 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Domain organization differences explain Bcr-Abl's preference for CrkL over CrkII.", "journal": "Nature chemical biology", "date": "2012", "authors": "Jankowski W, Saleh T, Pai MT, Sriram G, Birge RB, Kalodimos CG", "reference": { "type": "PubMed", "id": "22581121", "url": "https://pubmed.ncbi.nlm.nih.gov/22581121" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P46109-1", "protein_name": "Crk-like protein", "gene_name": "CRKL", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P46109", "url": "https://www.uniprot.org/uniprotkb/P46109" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 207, "end_pos": 207, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "P46109", "url": "https://www.uniprot.org/uniprotkb/P46109" }, { "database": "PubMed", "id": "15592455", "url": "https://pubmed.ncbi.nlm.nih.gov/15592455" }, { "database": "iPTMnet", "id": "P46109", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P46109" }, { "database": "PubMed", "id": "17016520", "url": "https://pubmed.ncbi.nlm.nih.gov/17016520" }, { "database": "PubMed", "id": "19901323", "url": "https://pubmed.ncbi.nlm.nih.gov/19901323" }, { "database": "PubMed", "id": "20068231", "url": "https://pubmed.ncbi.nlm.nih.gov/20068231" }, { "database": "PubMed", "id": "9053848", "url": "https://pubmed.ncbi.nlm.nih.gov/9053848" }, { "database": "PubMed", "id": "20670950", "url": "https://pubmed.ncbi.nlm.nih.gov/20670950" }, { "database": "PubMed", "id": "22581121", "url": "https://pubmed.ncbi.nlm.nih.gov/22581121" }, { "database": "PubMed", "id": "23318429", "url": "https://pubmed.ncbi.nlm.nih.gov/23318429" }, { "database": "PubMed", "id": "23691243", "url": "https://pubmed.ncbi.nlm.nih.gov/23691243" }, { "database": "PubMed", "id": "27078848", "url": "https://pubmed.ncbi.nlm.nih.gov/27078848" } ], "site_lbl": "Tyr207", "uniprot_canonical_ac": "P46109-1" } ], "record_id": "pubmed.22581121", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Loss-of-function screen in rhabdomyosarcoma identifies CRKL-YES as a critical signal for tumor growth.", "journal": "Oncogene", "date": "2013", "authors": "Yeung CL, Ngo VN, Grohar PJ, Arnaldez FI, Asante A, Wan X, Khan J, Hewitt SM, Khanna C, Staudt LM, Helman LJ", "reference": { "type": "PubMed", "id": "23318429", "url": "https://pubmed.ncbi.nlm.nih.gov/23318429" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P46109-1", "protein_name": "Crk-like protein", "gene_name": "CRKL", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P46109", "url": "https://www.uniprot.org/uniprotkb/P46109" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 207, "end_pos": 207, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "P46109", "url": "https://www.uniprot.org/uniprotkb/P46109" }, { "database": "PubMed", "id": "15592455", "url": "https://pubmed.ncbi.nlm.nih.gov/15592455" }, { "database": "iPTMnet", "id": "P46109", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P46109" }, { "database": "PubMed", "id": "17016520", "url": "https://pubmed.ncbi.nlm.nih.gov/17016520" }, { "database": "PubMed", "id": "19901323", "url": "https://pubmed.ncbi.nlm.nih.gov/19901323" }, { "database": "PubMed", "id": "20068231", "url": "https://pubmed.ncbi.nlm.nih.gov/20068231" }, { "database": "PubMed", "id": "9053848", "url": "https://pubmed.ncbi.nlm.nih.gov/9053848" }, { "database": "PubMed", "id": "20670950", "url": "https://pubmed.ncbi.nlm.nih.gov/20670950" }, { "database": "PubMed", "id": "22581121", "url": "https://pubmed.ncbi.nlm.nih.gov/22581121" }, { "database": "PubMed", "id": "23318429", "url": "https://pubmed.ncbi.nlm.nih.gov/23318429" }, { "database": "PubMed", "id": "23691243", "url": "https://pubmed.ncbi.nlm.nih.gov/23691243" }, { "database": "PubMed", "id": "27078848", "url": "https://pubmed.ncbi.nlm.nih.gov/27078848" } ], "site_lbl": "Tyr207", "uniprot_canonical_ac": "P46109-1" } ], "record_id": "pubmed.23318429", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "WAVE2 regulates epithelial morphology and cadherin isoform switching through regulation of Twist and Abl.", "journal": "PloS one", "date": "2013", "authors": "Bryce NS, Reynolds AB, Koleske AJ, Weaver AM", "reference": { "type": "PubMed", "id": "23691243", "url": "https://pubmed.ncbi.nlm.nih.gov/23691243" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P46109-1", "protein_name": "Crk-like protein", "gene_name": "CRKL", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P46109", "url": "https://www.uniprot.org/uniprotkb/P46109" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 207, "end_pos": 207, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "P46109", "url": "https://www.uniprot.org/uniprotkb/P46109" }, { "database": "PubMed", "id": "15592455", "url": "https://pubmed.ncbi.nlm.nih.gov/15592455" }, { "database": "iPTMnet", "id": "P46109", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P46109" }, { "database": "PubMed", "id": "17016520", "url": "https://pubmed.ncbi.nlm.nih.gov/17016520" }, { "database": "PubMed", "id": "19901323", "url": "https://pubmed.ncbi.nlm.nih.gov/19901323" }, { "database": "PubMed", "id": "20068231", "url": "https://pubmed.ncbi.nlm.nih.gov/20068231" }, { "database": "PubMed", "id": "9053848", "url": "https://pubmed.ncbi.nlm.nih.gov/9053848" }, { "database": "PubMed", "id": "20670950", "url": "https://pubmed.ncbi.nlm.nih.gov/20670950" }, { "database": "PubMed", "id": "22581121", "url": "https://pubmed.ncbi.nlm.nih.gov/22581121" }, { "database": "PubMed", "id": "23318429", "url": "https://pubmed.ncbi.nlm.nih.gov/23318429" }, { "database": "PubMed", "id": "23691243", "url": "https://pubmed.ncbi.nlm.nih.gov/23691243" }, { "database": "PubMed", "id": "27078848", "url": "https://pubmed.ncbi.nlm.nih.gov/27078848" } ], "site_lbl": "Tyr207", "uniprot_canonical_ac": "P46109-1" } ], "record_id": "pubmed.23691243", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "CRKL mediates EML4-ALK signaling and is a potential therapeutic target for ALK-rearranged lung adenocarcinoma.", "journal": "Oncotarget", "date": "2016", "authors": "An R, Wang Y, Voeller D, Gower A, Kim IK, Zhang YW, Giaccone G", "reference": { "type": "PubMed", "id": "27078848", "url": "https://pubmed.ncbi.nlm.nih.gov/27078848" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P46109-1", "protein_name": "Crk-like protein", "gene_name": "CRKL", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P46109", "url": "https://www.uniprot.org/uniprotkb/P46109" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 198, "end_pos": 198, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P46109", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P46109" }, { "database": "PubMed", "id": "17016520", "url": "https://pubmed.ncbi.nlm.nih.gov/17016520" }, { "database": "PubMed", "id": "17389395", "url": "https://pubmed.ncbi.nlm.nih.gov/17389395" }, { "database": "PubMed", "id": "18669648", "url": "https://pubmed.ncbi.nlm.nih.gov/18669648" }, { "database": "PubMed", "id": "27078848", "url": "https://pubmed.ncbi.nlm.nih.gov/27078848" } ], "site_lbl": "Tyr198", "uniprot_canonical_ac": "P46109-1" }, { "start_pos": 207, "end_pos": 207, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Tyr", "comment": "Phosphotyrosine", "evidence": [ { "database": "UniProtKB", "id": "P46109", "url": "https://www.uniprot.org/uniprotkb/P46109" }, { "database": "PubMed", "id": "15592455", "url": "https://pubmed.ncbi.nlm.nih.gov/15592455" }, { "database": "iPTMnet", "id": "P46109", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P46109" }, { "database": "PubMed", "id": "17016520", "url": "https://pubmed.ncbi.nlm.nih.gov/17016520" }, { "database": "PubMed", "id": "19901323", "url": "https://pubmed.ncbi.nlm.nih.gov/19901323" }, { "database": "PubMed", "id": "20068231", "url": "https://pubmed.ncbi.nlm.nih.gov/20068231" }, { "database": "PubMed", "id": "9053848", "url": "https://pubmed.ncbi.nlm.nih.gov/9053848" }, { "database": "PubMed", "id": "20670950", "url": "https://pubmed.ncbi.nlm.nih.gov/20670950" }, { "database": "PubMed", "id": "22581121", "url": "https://pubmed.ncbi.nlm.nih.gov/22581121" }, { "database": "PubMed", "id": "23318429", "url": "https://pubmed.ncbi.nlm.nih.gov/23318429" }, { "database": "PubMed", "id": "23691243", "url": "https://pubmed.ncbi.nlm.nih.gov/23691243" }, { "database": "PubMed", "id": "27078848", "url": "https://pubmed.ncbi.nlm.nih.gov/27078848" } ], "site_lbl": "Tyr207", "uniprot_canonical_ac": "P46109-1" } ], "record_id": "pubmed.27078848", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Phosphorylation of CrkL S114 induced by common gamma chain cytokines and T-cell receptor signal transduction.", "journal": "Scientific reports", "date": "2021", "authors": "Estrada A 3rd, Rodriguez AC, Rodriguez G, Grant AH, Ayala-Marin YM, Arrieta AJ, Kirken RA", "reference": { "type": "PubMed", "id": "34417497", "url": "https://pubmed.ncbi.nlm.nih.gov/34417497" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P46109-1", "protein_name": "Crk-like protein", "gene_name": "CRKL", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P46109", "url": "https://www.uniprot.org/uniprotkb/P46109" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 114, "end_pos": 114, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "P46109", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/P46109" }, { "database": "PubMed", "id": "34417497", "url": "https://pubmed.ncbi.nlm.nih.gov/34417497" } ], "site_lbl": "Ser114", "uniprot_canonical_ac": "P46109-1" } ], "record_id": "pubmed.34417497", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Cancer-associated fibroblast exosome LINC00355 promotes epithelial-mesenchymal transition and chemoresistance in colorectal cancer through the miR-34b-5p/CRKL axis.", "journal": "Cancer gene therapy", "date": "2024-02", "authors": "Hu Jun-Hong, Tang Hong-Na, Wang Yu-Hang", "reference": { "type": "PubMed", "id": "38052858", "url": "https://pubmed.ncbi.nlm.nih.gov/38052858" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P46109-1", "protein_name": "Crk-like protein", "gene_name": "CRKL", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P46109", "url": "https://www.uniprot.org/uniprotkb/P46109" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.38052858", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Exploring the short linear motif-mediated protein-protein interactions of CrkL through ProP-PD.", "journal": "Biochemical and biophysical research communications", "date": "2024-04-09", "authors": "Pagano L, Simonetti L, Pennacchietti V, Toto A, Malagrin\u00f2 F, Ivarsson Y, Gianni S", "reference": { "type": "PubMed", "id": "38387229", "url": "https://pubmed.ncbi.nlm.nih.gov/38387229" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P46109-1", "protein_name": "Crk-like protein", "gene_name": "CRKL", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P46109", "url": "https://www.uniprot.org/uniprotkb/P46109" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.38387229", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "CRKL dictates anti-PD-1 resistance by mediating tumor-associated neutrophil infiltration in hepatocellular carcinoma.", "journal": "Journal of hepatology", "date": "2024-02-23", "authors": "Xie Peiyi, Yu Mincheng, Zhang Bo, Yu Qiang, Zhao Yufei, Wu Mengyuan, Jin Lei, Yan Jiuliang, Zhou Binghai, Liu Shuang, Li Xiaoqiang, Zhou Chenhao, Zhu Xiaodong, Huang Cheng, Xu Yongfeng, Xiao Yongsheng, Zhou Jian, Fan Jia, Hung Mien-Chie, Ye Qinghai, Guo Lei, Li Hui", "reference": { "type": "PubMed", "id": "38403027", "url": "https://pubmed.ncbi.nlm.nih.gov/38403027" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P46109-1", "protein_name": "Crk-like protein", "gene_name": "CRKL", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P46109", "url": "https://www.uniprot.org/uniprotkb/P46109" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.38403027", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "CRKL but not CRKII contributes to hemin-induced erythroid differentiation of CML.", "journal": "Journal of cellular and molecular medicine", "date": "2024-05", "authors": "Guo Chunmei, Lv Xinxin, Zhang Qiuling, Yi Lina, Ren Yingying, Li Zhaopeng, Yan Jinsong, Zheng Shanliang, Sun Ming-Zhong, Liu Shuqing", "reference": { "type": "PubMed", "id": "38683131", "url": "https://pubmed.ncbi.nlm.nih.gov/38683131" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P46109-1", "protein_name": "Crk-like protein", "gene_name": "CRKL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46108-1", "protein_name": "Adapter molecule crk", "gene_name": "CRK", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P46109", "url": "https://www.uniprot.org/uniprotkb/P46109" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.38683131", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "CRKL Enhances YAP Signaling through Binding and JNK/JUN Pathway Activation in Liver Cancer.", "journal": "International journal of molecular sciences", "date": "2024-08-05", "authors": "Wesener Marie C, Weiler Sofia M E, Bissinger Michaela, Klessinger Tobias F, Rose Fabian, Merker Sabine, Luzarowski Marcin, Ruppert Thomas, Helm Barbara, Klingm\u00fcller Ursula, Schirmacher Peter, Breuhahn Kai", "reference": { "type": "PubMed", "id": "39126118", "url": "https://pubmed.ncbi.nlm.nih.gov/39126118" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P46109-1", "protein_name": "Crk-like protein", "gene_name": "CRKL", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P46109", "url": "https://www.uniprot.org/uniprotkb/P46109" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.39126118", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Isolation and chromosomal localization of CRKL, a human crk-like gene.", "journal": "Oncogene", "date": "1993", "authors": "ten Hoeve J, Morris C, Heisterkamp N, Groffen J", "reference": { "type": "PubMed", "id": "8361759", "url": "https://pubmed.ncbi.nlm.nih.gov/8361759" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P46109-1", "protein_name": "Crk-like protein", "gene_name": "CRKL", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P46109", "url": "https://www.uniprot.org/uniprotkb/P46109" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.8361759", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Insulin-like growth factor-1-induced phosphorylation of the forkhead family transcription factor FKHRL1 is mediated by Akt kinase in PC12 cells.", "journal": "The Journal of biological chemistry", "date": "2000", "authors": "Zheng WH, Kar S, Quirion R", "reference": { "type": "PubMed", "id": "10995739", "url": "https://pubmed.ncbi.nlm.nih.gov/10995739" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O43524-1", "protein_name": "Forkhead box protein O3", "gene_name": "FOXO3", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "O43524", "url": "https://www.uniprot.org/uniprotkb/O43524" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 253, "end_pos": 253, "kinase_uniprot_canonical_ac": "P31749-1", "kinase_gene_name": "AKT1", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O43524", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O43524" }, { "database": "PubMed", "id": "11154281", "url": "https://pubmed.ncbi.nlm.nih.gov/11154281" }, { "database": "PubMed", "id": "20068231", "url": "https://pubmed.ncbi.nlm.nih.gov/20068231" }, { "database": "PubMed", "id": "10995739", "url": "https://pubmed.ncbi.nlm.nih.gov/10995739" }, { "database": "PubMed", "id": "19188143", "url": "https://pubmed.ncbi.nlm.nih.gov/19188143" } ], "site_lbl": "Ser253", "uniprot_canonical_ac": "O43524-1" }, { "start_pos": 32, "end_pos": 32, "kinase_uniprot_canonical_ac": "P31749-1", "kinase_gene_name": "AKT1", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O43524", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O43524" }, { "database": "PubMed", "id": "10102273", "url": "https://pubmed.ncbi.nlm.nih.gov/10102273" }, { "database": "PubMed", "id": "11154281", "url": "https://pubmed.ncbi.nlm.nih.gov/11154281" }, { "database": "PubMed", "id": "10995739", "url": "https://pubmed.ncbi.nlm.nih.gov/10995739" }, { "database": "PubMed", "id": "19188143", "url": "https://pubmed.ncbi.nlm.nih.gov/19188143" } ], "site_lbl": "Thr32", "uniprot_canonical_ac": "O43524-1" } ], "record_id": "pubmed.10995739", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "14-3-3 transits to the nucleus and participates in dynamic nucleocytoplasmic transport.", "journal": "The Journal of cell biology", "date": "2002", "authors": "Brunet A, Kanai F, Stehn J, Xu J, Sarbassova D, Frangioni JV, Dalal SN, DeCaprio JA, Greenberg ME, Yaffe MB", "reference": { "type": "PubMed", "id": "11864996", "url": "https://pubmed.ncbi.nlm.nih.gov/11864996" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O43524-1", "protein_name": "Forkhead box protein O3", "gene_name": "FOXO3", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "O43524", "url": "https://www.uniprot.org/uniprotkb/O43524" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 253, "end_pos": 253, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PKB/AKT1 and MAPKAPK5", "evidence": [ { "database": "UniProtKB", "id": "O43524", "url": "https://www.uniprot.org/uniprotkb/O43524" }, { "database": "iPTMnet", "id": "O43524", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O43524" }, { "database": "PubMed", "id": "11864996", "url": "https://pubmed.ncbi.nlm.nih.gov/11864996" }, { "database": "PubMed", "id": "17044646", "url": "https://pubmed.ncbi.nlm.nih.gov/17044646" }, { "database": "PubMed", "id": "17190839", "url": "https://pubmed.ncbi.nlm.nih.gov/17190839" }, { "database": "PubMed", "id": "19424579", "url": "https://pubmed.ncbi.nlm.nih.gov/19424579" }, { "database": "PubMed", "id": "20110348", "url": "https://pubmed.ncbi.nlm.nih.gov/20110348" }, { "database": "PubMed", "id": "20139145", "url": "https://pubmed.ncbi.nlm.nih.gov/20139145" }, { "database": "PubMed", "id": "20525153", "url": "https://pubmed.ncbi.nlm.nih.gov/20525153" }, { "database": "PubMed", "id": "20661471", "url": "https://pubmed.ncbi.nlm.nih.gov/20661471" }, { "database": "PubMed", "id": "21291561", "url": "https://pubmed.ncbi.nlm.nih.gov/21291561" }, { "database": "PubMed", "id": "21777391", "url": "https://pubmed.ncbi.nlm.nih.gov/21777391" }, { "database": "PubMed", "id": "22820736", "url": "https://pubmed.ncbi.nlm.nih.gov/22820736" }, { "database": "PubMed", "id": "23257900", "url": "https://pubmed.ncbi.nlm.nih.gov/23257900" }, { "database": "PubMed", "id": "23392169", "url": "https://pubmed.ncbi.nlm.nih.gov/23392169" }, { "database": "PubMed", "id": "23805378", "url": "https://pubmed.ncbi.nlm.nih.gov/23805378" }, { "database": "PubMed", "id": "23819460", "url": "https://pubmed.ncbi.nlm.nih.gov/23819460" }, { "database": "PubMed", "id": "24339862", "url": "https://pubmed.ncbi.nlm.nih.gov/24339862" }, { "database": "PubMed", "id": "24586650", "url": "https://pubmed.ncbi.nlm.nih.gov/24586650" }, { "database": "PubMed", "id": "24858012", "url": "https://pubmed.ncbi.nlm.nih.gov/24858012" }, { "database": "PubMed", "id": "25191523", "url": "https://pubmed.ncbi.nlm.nih.gov/25191523" }, { "database": "PubMed", "id": "25521510", "url": "https://pubmed.ncbi.nlm.nih.gov/25521510" }, { "database": "PubMed", "id": "26446641", "url": "https://pubmed.ncbi.nlm.nih.gov/26446641" }, { "database": "PubMed", "id": "26643256", "url": "https://pubmed.ncbi.nlm.nih.gov/26643256" }, { "database": "PubMed", "id": "27411103", "url": "https://pubmed.ncbi.nlm.nih.gov/27411103" }, { "database": "PubMed", "id": "27769056", "url": "https://pubmed.ncbi.nlm.nih.gov/27769056" }, { "database": "PubMed", "id": "27856257", "url": "https://pubmed.ncbi.nlm.nih.gov/27856257" }, { "database": "PubMed", "id": "28036259", "url": "https://pubmed.ncbi.nlm.nih.gov/28036259" }, { "database": "PubMed", "id": "28164237", "url": "https://pubmed.ncbi.nlm.nih.gov/28164237" }, { "database": "PubMed", "id": "28969041", "url": "https://pubmed.ncbi.nlm.nih.gov/28969041" }, { "database": "PubMed", "id": "29017179", "url": "https://pubmed.ncbi.nlm.nih.gov/29017179" }, { "database": "PubMed", "id": "29099866", "url": "https://pubmed.ncbi.nlm.nih.gov/29099866" }, { "database": "PubMed", "id": "29217661", "url": "https://pubmed.ncbi.nlm.nih.gov/29217661" }, { "database": "PubMed", "id": "29893976", "url": "https://pubmed.ncbi.nlm.nih.gov/29893976" }, { "database": "PubMed", "id": "30671548", "url": "https://pubmed.ncbi.nlm.nih.gov/30671548" }, { "database": "PubMed", "id": "30674870", "url": "https://pubmed.ncbi.nlm.nih.gov/30674870" }, { "database": "PubMed", "id": "31100089", "url": "https://pubmed.ncbi.nlm.nih.gov/31100089" }, { "database": "PubMed", "id": "31197106", "url": "https://pubmed.ncbi.nlm.nih.gov/31197106" }, { "database": "PubMed", "id": "31506431", "url": "https://pubmed.ncbi.nlm.nih.gov/31506431" }, { "database": "PubMed", "id": "31629677", "url": "https://pubmed.ncbi.nlm.nih.gov/31629677" }, { "database": "PubMed", "id": "31902744", "url": "https://pubmed.ncbi.nlm.nih.gov/31902744" }, { "database": "PubMed", "id": "32347651", "url": "https://pubmed.ncbi.nlm.nih.gov/32347651" }, { "database": "PubMed", "id": "32406610", "url": "https://pubmed.ncbi.nlm.nih.gov/32406610" }, { "database": "PubMed", "id": "32424140", "url": "https://pubmed.ncbi.nlm.nih.gov/32424140" }, { "database": "PubMed", "id": "32788653", "url": "https://pubmed.ncbi.nlm.nih.gov/32788653" }, { "database": "PubMed", "id": "33408225", "url": "https://pubmed.ncbi.nlm.nih.gov/33408225" }, { "database": "PubMed", "id": "34475505", "url": "https://pubmed.ncbi.nlm.nih.gov/34475505" }, { "database": "PubMed", "id": "35874228", "url": "https://pubmed.ncbi.nlm.nih.gov/35874228" }, { "database": "PubMed", "id": "21329882", "url": "https://pubmed.ncbi.nlm.nih.gov/21329882" }, { "database": "PubMed", "id": "30513302", "url": "https://pubmed.ncbi.nlm.nih.gov/30513302" }, { "database": "PubMed", "id": "10102273", "url": "https://pubmed.ncbi.nlm.nih.gov/10102273" } ], "site_lbl": "Ser253", "uniprot_canonical_ac": "O43524-1" }, { "start_pos": 315, "end_pos": 315, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by SGK1", "evidence": [ { "database": "UniProtKB", "id": "O43524", "url": "https://www.uniprot.org/uniprotkb/O43524" }, { "database": "iPTMnet", "id": "O43524", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O43524" }, { "database": "PubMed", "id": "11864996", "url": "https://pubmed.ncbi.nlm.nih.gov/11864996" }, { "database": "PubMed", "id": "17190839", "url": "https://pubmed.ncbi.nlm.nih.gov/17190839" }, { "database": "PubMed", "id": "22820736", "url": "https://pubmed.ncbi.nlm.nih.gov/22820736" }, { "database": "PubMed", "id": "24339862", "url": "https://pubmed.ncbi.nlm.nih.gov/24339862" }, { "database": "PubMed", "id": "24586650", "url": "https://pubmed.ncbi.nlm.nih.gov/24586650" }, { "database": "PubMed", "id": "26446641", "url": "https://pubmed.ncbi.nlm.nih.gov/26446641" }, { "database": "PubMed", "id": "27856257", "url": "https://pubmed.ncbi.nlm.nih.gov/27856257" }, { "database": "PubMed", "id": "29893976", "url": "https://pubmed.ncbi.nlm.nih.gov/29893976" }, { "database": "PubMed", "id": "32424140", "url": "https://pubmed.ncbi.nlm.nih.gov/32424140" }, { "database": "PubMed", "id": "11154281", "url": "https://pubmed.ncbi.nlm.nih.gov/11154281" }, { "database": "PubMed", "id": "10102273", "url": "https://pubmed.ncbi.nlm.nih.gov/10102273" } ], "site_lbl": "Ser315", "uniprot_canonical_ac": "O43524-1" }, { "start_pos": 32, "end_pos": 32, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine; by PKB/AKT1", "evidence": [ { "database": "UniProtKB", "id": "O43524", "url": "https://www.uniprot.org/uniprotkb/O43524" }, { "database": "iPTMnet", "id": "O43524", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O43524" }, { "database": "PubMed", "id": "11154281", "url": "https://pubmed.ncbi.nlm.nih.gov/11154281" }, { "database": "PubMed", "id": "11864996", "url": "https://pubmed.ncbi.nlm.nih.gov/11864996" }, { "database": "PubMed", "id": "12913110", "url": "https://pubmed.ncbi.nlm.nih.gov/12913110" }, { "database": "PubMed", "id": "15207915", "url": "https://pubmed.ncbi.nlm.nih.gov/15207915" }, { "database": "PubMed", "id": "17044646", "url": "https://pubmed.ncbi.nlm.nih.gov/17044646" }, { "database": "PubMed", "id": "17077388", "url": "https://pubmed.ncbi.nlm.nih.gov/17077388" }, { "database": "PubMed", "id": "17190839", "url": "https://pubmed.ncbi.nlm.nih.gov/17190839" }, { "database": "PubMed", "id": "18794113", "url": "https://pubmed.ncbi.nlm.nih.gov/18794113" }, { "database": "PubMed", "id": "18937079", "url": "https://pubmed.ncbi.nlm.nih.gov/18937079" }, { "database": "PubMed", "id": "20110348", "url": "https://pubmed.ncbi.nlm.nih.gov/20110348" }, { "database": "PubMed", "id": "20211546", "url": "https://pubmed.ncbi.nlm.nih.gov/20211546" }, { "database": "PubMed", "id": "20525153", "url": "https://pubmed.ncbi.nlm.nih.gov/20525153" }, { "database": "PubMed", "id": "20643654", "url": "https://pubmed.ncbi.nlm.nih.gov/20643654" }, { "database": "PubMed", "id": "20840854", "url": "https://pubmed.ncbi.nlm.nih.gov/20840854" }, { "database": "PubMed", "id": "20950443", "url": "https://pubmed.ncbi.nlm.nih.gov/20950443" }, { "database": "PubMed", "id": "21452041", "url": "https://pubmed.ncbi.nlm.nih.gov/21452041" }, { "database": "PubMed", "id": "21639915", "url": "https://pubmed.ncbi.nlm.nih.gov/21639915" }, { "database": "PubMed", "id": "22820736", "url": "https://pubmed.ncbi.nlm.nih.gov/22820736" }, { "database": "PubMed", "id": "22848740", "url": "https://pubmed.ncbi.nlm.nih.gov/22848740" }, { "database": "PubMed", "id": "22928011", "url": "https://pubmed.ncbi.nlm.nih.gov/22928011" }, { "database": "PubMed", "id": "22988968", "url": "https://pubmed.ncbi.nlm.nih.gov/22988968" }, { "database": "PubMed", "id": "23257900", "url": "https://pubmed.ncbi.nlm.nih.gov/23257900" }, { "database": "PubMed", "id": "23568341", "url": "https://pubmed.ncbi.nlm.nih.gov/23568341" }, { "database": "PubMed", "id": "23661003", "url": "https://pubmed.ncbi.nlm.nih.gov/23661003" }, { "database": "PubMed", "id": "24339862", "url": "https://pubmed.ncbi.nlm.nih.gov/24339862" }, { "database": "PubMed", "id": "24493314", "url": "https://pubmed.ncbi.nlm.nih.gov/24493314" }, { "database": "PubMed", "id": "24586650", "url": "https://pubmed.ncbi.nlm.nih.gov/24586650" }, { "database": "PubMed", "id": "24814195", "url": "https://pubmed.ncbi.nlm.nih.gov/24814195" }, { "database": "PubMed", "id": "24954032", "url": "https://pubmed.ncbi.nlm.nih.gov/24954032" }, { "database": "PubMed", "id": "25503443", "url": "https://pubmed.ncbi.nlm.nih.gov/25503443" }, { "database": "PubMed", "id": "25521510", "url": "https://pubmed.ncbi.nlm.nih.gov/25521510" }, { "database": "PubMed", "id": "25603236", "url": "https://pubmed.ncbi.nlm.nih.gov/25603236" }, { "database": "PubMed", "id": "25611382", "url": "https://pubmed.ncbi.nlm.nih.gov/25611382" }, { "database": "PubMed", "id": "26446641", "url": "https://pubmed.ncbi.nlm.nih.gov/26446641" }, { "database": "PubMed", "id": "26674329", "url": "https://pubmed.ncbi.nlm.nih.gov/26674329" }, { "database": "PubMed", "id": "27602284", "url": "https://pubmed.ncbi.nlm.nih.gov/27602284" }, { "database": "PubMed", "id": "27769056", "url": "https://pubmed.ncbi.nlm.nih.gov/27769056" }, { "database": "PubMed", "id": "27856257", "url": "https://pubmed.ncbi.nlm.nih.gov/27856257" }, { "database": "PubMed", "id": "28036259", "url": "https://pubmed.ncbi.nlm.nih.gov/28036259" }, { "database": "PubMed", "id": "28398822", "url": "https://pubmed.ncbi.nlm.nih.gov/28398822" }, { "database": "PubMed", "id": "28415610", "url": "https://pubmed.ncbi.nlm.nih.gov/28415610" }, { "database": "PubMed", "id": "29017179", "url": "https://pubmed.ncbi.nlm.nih.gov/29017179" }, { "database": "PubMed", "id": "29044520", "url": "https://pubmed.ncbi.nlm.nih.gov/29044520" }, { "database": "PubMed", "id": "29217661", "url": "https://pubmed.ncbi.nlm.nih.gov/29217661" }, { "database": "PubMed", "id": "29893976", "url": "https://pubmed.ncbi.nlm.nih.gov/29893976" }, { "database": "PubMed", "id": "29915392", "url": "https://pubmed.ncbi.nlm.nih.gov/29915392" }, { "database": "PubMed", "id": "31629677", "url": "https://pubmed.ncbi.nlm.nih.gov/31629677" }, { "database": "PubMed", "id": "31727006", "url": "https://pubmed.ncbi.nlm.nih.gov/31727006" }, { "database": "PubMed", "id": "32424140", "url": "https://pubmed.ncbi.nlm.nih.gov/32424140" }, { "database": "PubMed", "id": "32788653", "url": "https://pubmed.ncbi.nlm.nih.gov/32788653" }, { "database": "PubMed", "id": "10102273", "url": "https://pubmed.ncbi.nlm.nih.gov/10102273" } ], "site_lbl": "Thr32", "uniprot_canonical_ac": "O43524-1" } ], "record_id": "pubmed.11864996", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 3 }, { "field": "total_sites", "count": 3 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "FOXO transcription factors directly activate bim gene expression and promote apoptosis in sympathetic neurons.", "journal": "The Journal of cell biology", "date": "2003", "authors": "Gilley J, Coffer PJ, Ham J", "reference": { "type": "PubMed", "id": "12913110", "url": "https://pubmed.ncbi.nlm.nih.gov/12913110" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O43524-1", "protein_name": "Forkhead box protein O3", "gene_name": "FOXO3", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "O43524", "url": "https://www.uniprot.org/uniprotkb/O43524" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 32, "end_pos": 32, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine; by PKB/AKT1", "evidence": [ { "database": "UniProtKB", "id": "O43524", "url": "https://www.uniprot.org/uniprotkb/O43524" }, { "database": "iPTMnet", "id": "O43524", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O43524" }, { "database": "PubMed", "id": "11154281", "url": "https://pubmed.ncbi.nlm.nih.gov/11154281" }, { "database": "PubMed", "id": "11864996", "url": "https://pubmed.ncbi.nlm.nih.gov/11864996" }, { "database": "PubMed", "id": "12913110", "url": "https://pubmed.ncbi.nlm.nih.gov/12913110" }, { "database": "PubMed", "id": "15207915", "url": "https://pubmed.ncbi.nlm.nih.gov/15207915" }, { "database": "PubMed", "id": "17044646", "url": "https://pubmed.ncbi.nlm.nih.gov/17044646" }, { "database": "PubMed", "id": "17077388", "url": "https://pubmed.ncbi.nlm.nih.gov/17077388" }, { "database": "PubMed", "id": "17190839", "url": "https://pubmed.ncbi.nlm.nih.gov/17190839" }, { "database": "PubMed", "id": "18794113", "url": "https://pubmed.ncbi.nlm.nih.gov/18794113" }, { "database": "PubMed", "id": "18937079", "url": "https://pubmed.ncbi.nlm.nih.gov/18937079" }, { "database": "PubMed", "id": "20110348", "url": "https://pubmed.ncbi.nlm.nih.gov/20110348" }, { "database": "PubMed", "id": "20211546", "url": "https://pubmed.ncbi.nlm.nih.gov/20211546" }, { "database": "PubMed", "id": "20525153", "url": "https://pubmed.ncbi.nlm.nih.gov/20525153" }, { "database": "PubMed", "id": "20643654", "url": "https://pubmed.ncbi.nlm.nih.gov/20643654" }, { "database": "PubMed", "id": "20840854", "url": "https://pubmed.ncbi.nlm.nih.gov/20840854" }, { "database": "PubMed", "id": "20950443", "url": "https://pubmed.ncbi.nlm.nih.gov/20950443" }, { "database": "PubMed", "id": "21452041", "url": "https://pubmed.ncbi.nlm.nih.gov/21452041" }, { "database": "PubMed", "id": "21639915", "url": "https://pubmed.ncbi.nlm.nih.gov/21639915" }, { "database": "PubMed", "id": "22820736", "url": "https://pubmed.ncbi.nlm.nih.gov/22820736" }, { "database": "PubMed", "id": "22848740", "url": "https://pubmed.ncbi.nlm.nih.gov/22848740" }, { "database": "PubMed", "id": "22928011", "url": "https://pubmed.ncbi.nlm.nih.gov/22928011" }, { "database": "PubMed", "id": "22988968", "url": "https://pubmed.ncbi.nlm.nih.gov/22988968" }, { "database": "PubMed", "id": "23257900", "url": "https://pubmed.ncbi.nlm.nih.gov/23257900" }, { "database": "PubMed", "id": "23568341", "url": "https://pubmed.ncbi.nlm.nih.gov/23568341" }, { "database": "PubMed", "id": "23661003", "url": "https://pubmed.ncbi.nlm.nih.gov/23661003" }, { "database": "PubMed", "id": "24339862", "url": "https://pubmed.ncbi.nlm.nih.gov/24339862" }, { "database": "PubMed", "id": "24493314", "url": "https://pubmed.ncbi.nlm.nih.gov/24493314" }, { "database": "PubMed", "id": "24586650", "url": "https://pubmed.ncbi.nlm.nih.gov/24586650" }, { "database": "PubMed", "id": "24814195", "url": "https://pubmed.ncbi.nlm.nih.gov/24814195" }, { "database": "PubMed", "id": "24954032", "url": "https://pubmed.ncbi.nlm.nih.gov/24954032" }, { "database": "PubMed", "id": "25503443", "url": "https://pubmed.ncbi.nlm.nih.gov/25503443" }, { "database": "PubMed", "id": "25521510", "url": "https://pubmed.ncbi.nlm.nih.gov/25521510" }, { "database": "PubMed", "id": "25603236", "url": "https://pubmed.ncbi.nlm.nih.gov/25603236" }, { "database": "PubMed", "id": "25611382", "url": "https://pubmed.ncbi.nlm.nih.gov/25611382" }, { "database": "PubMed", "id": "26446641", "url": "https://pubmed.ncbi.nlm.nih.gov/26446641" }, { "database": "PubMed", "id": "26674329", "url": "https://pubmed.ncbi.nlm.nih.gov/26674329" }, { "database": "PubMed", "id": "27602284", "url": "https://pubmed.ncbi.nlm.nih.gov/27602284" }, { "database": "PubMed", "id": "27769056", "url": "https://pubmed.ncbi.nlm.nih.gov/27769056" }, { "database": "PubMed", "id": "27856257", "url": "https://pubmed.ncbi.nlm.nih.gov/27856257" }, { "database": "PubMed", "id": "28036259", "url": "https://pubmed.ncbi.nlm.nih.gov/28036259" }, { "database": "PubMed", "id": "28398822", "url": "https://pubmed.ncbi.nlm.nih.gov/28398822" }, { "database": "PubMed", "id": "28415610", "url": "https://pubmed.ncbi.nlm.nih.gov/28415610" }, { "database": "PubMed", "id": "29017179", "url": "https://pubmed.ncbi.nlm.nih.gov/29017179" }, { "database": "PubMed", "id": "29044520", "url": "https://pubmed.ncbi.nlm.nih.gov/29044520" }, { "database": "PubMed", "id": "29217661", "url": "https://pubmed.ncbi.nlm.nih.gov/29217661" }, { "database": "PubMed", "id": "29893976", "url": "https://pubmed.ncbi.nlm.nih.gov/29893976" }, { "database": "PubMed", "id": "29915392", "url": "https://pubmed.ncbi.nlm.nih.gov/29915392" }, { "database": "PubMed", "id": "31629677", "url": "https://pubmed.ncbi.nlm.nih.gov/31629677" }, { "database": "PubMed", "id": "31727006", "url": "https://pubmed.ncbi.nlm.nih.gov/31727006" }, { "database": "PubMed", "id": "32424140", "url": "https://pubmed.ncbi.nlm.nih.gov/32424140" }, { "database": "PubMed", "id": "32788653", "url": "https://pubmed.ncbi.nlm.nih.gov/32788653" }, { "database": "PubMed", "id": "10102273", "url": "https://pubmed.ncbi.nlm.nih.gov/10102273" } ], "site_lbl": "Thr32", "uniprot_canonical_ac": "O43524-1" } ], "record_id": "pubmed.12913110", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Regulation of FOXO3a by brain-derived neurotrophic factor in differentiated human SH-SY5Y neuroblastoma cells.", "journal": "Brain research. Molecular brain research", "date": "2004", "authors": "Zhu W, Bijur GN, Styles NA, Li X", "reference": { "type": "PubMed", "id": "15207915", "url": "https://pubmed.ncbi.nlm.nih.gov/15207915" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O43524-1", "protein_name": "Forkhead box protein O3", "gene_name": "FOXO3", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "O43524", "url": "https://www.uniprot.org/uniprotkb/O43524" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 32, "end_pos": 32, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine; by PKB/AKT1", "evidence": [ { "database": "UniProtKB", "id": "O43524", "url": "https://www.uniprot.org/uniprotkb/O43524" }, { "database": "iPTMnet", "id": "O43524", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O43524" }, { "database": "PubMed", "id": "11154281", "url": "https://pubmed.ncbi.nlm.nih.gov/11154281" }, { "database": "PubMed", "id": "11864996", "url": "https://pubmed.ncbi.nlm.nih.gov/11864996" }, { "database": "PubMed", "id": "12913110", "url": "https://pubmed.ncbi.nlm.nih.gov/12913110" }, { "database": "PubMed", "id": "15207915", "url": "https://pubmed.ncbi.nlm.nih.gov/15207915" }, { "database": "PubMed", "id": "17044646", "url": "https://pubmed.ncbi.nlm.nih.gov/17044646" }, { "database": "PubMed", "id": "17077388", "url": "https://pubmed.ncbi.nlm.nih.gov/17077388" }, { "database": "PubMed", "id": "17190839", "url": "https://pubmed.ncbi.nlm.nih.gov/17190839" }, { "database": "PubMed", "id": "18794113", "url": "https://pubmed.ncbi.nlm.nih.gov/18794113" }, { "database": "PubMed", "id": "18937079", "url": "https://pubmed.ncbi.nlm.nih.gov/18937079" }, { "database": "PubMed", "id": "20110348", "url": "https://pubmed.ncbi.nlm.nih.gov/20110348" }, { "database": "PubMed", "id": "20211546", "url": "https://pubmed.ncbi.nlm.nih.gov/20211546" }, { "database": "PubMed", "id": "20525153", "url": "https://pubmed.ncbi.nlm.nih.gov/20525153" }, { "database": "PubMed", "id": "20643654", "url": "https://pubmed.ncbi.nlm.nih.gov/20643654" }, { "database": "PubMed", "id": "20840854", "url": "https://pubmed.ncbi.nlm.nih.gov/20840854" }, { "database": "PubMed", "id": "20950443", "url": "https://pubmed.ncbi.nlm.nih.gov/20950443" }, { "database": "PubMed", "id": "21452041", "url": "https://pubmed.ncbi.nlm.nih.gov/21452041" }, { "database": "PubMed", "id": "21639915", "url": "https://pubmed.ncbi.nlm.nih.gov/21639915" }, { "database": "PubMed", "id": "22820736", "url": "https://pubmed.ncbi.nlm.nih.gov/22820736" }, { "database": "PubMed", "id": "22848740", "url": "https://pubmed.ncbi.nlm.nih.gov/22848740" }, { "database": "PubMed", "id": "22928011", "url": "https://pubmed.ncbi.nlm.nih.gov/22928011" }, { "database": "PubMed", "id": "22988968", "url": "https://pubmed.ncbi.nlm.nih.gov/22988968" }, { "database": "PubMed", "id": "23257900", "url": "https://pubmed.ncbi.nlm.nih.gov/23257900" }, { "database": "PubMed", "id": "23568341", "url": "https://pubmed.ncbi.nlm.nih.gov/23568341" }, { "database": "PubMed", "id": "23661003", "url": "https://pubmed.ncbi.nlm.nih.gov/23661003" }, { "database": "PubMed", "id": "24339862", "url": "https://pubmed.ncbi.nlm.nih.gov/24339862" }, { "database": "PubMed", "id": "24493314", "url": "https://pubmed.ncbi.nlm.nih.gov/24493314" }, { "database": "PubMed", "id": "24586650", "url": "https://pubmed.ncbi.nlm.nih.gov/24586650" }, { "database": "PubMed", "id": "24814195", "url": "https://pubmed.ncbi.nlm.nih.gov/24814195" }, { "database": "PubMed", "id": "24954032", "url": "https://pubmed.ncbi.nlm.nih.gov/24954032" }, { "database": "PubMed", "id": "25503443", "url": "https://pubmed.ncbi.nlm.nih.gov/25503443" }, { "database": "PubMed", "id": "25521510", "url": "https://pubmed.ncbi.nlm.nih.gov/25521510" }, { "database": "PubMed", "id": "25603236", "url": "https://pubmed.ncbi.nlm.nih.gov/25603236" }, { "database": "PubMed", "id": "25611382", "url": "https://pubmed.ncbi.nlm.nih.gov/25611382" }, { "database": "PubMed", "id": "26446641", "url": "https://pubmed.ncbi.nlm.nih.gov/26446641" }, { "database": "PubMed", "id": "26674329", "url": "https://pubmed.ncbi.nlm.nih.gov/26674329" }, { "database": "PubMed", "id": "27602284", "url": "https://pubmed.ncbi.nlm.nih.gov/27602284" }, { "database": "PubMed", "id": "27769056", "url": "https://pubmed.ncbi.nlm.nih.gov/27769056" }, { "database": "PubMed", "id": "27856257", "url": "https://pubmed.ncbi.nlm.nih.gov/27856257" }, { "database": "PubMed", "id": "28036259", "url": "https://pubmed.ncbi.nlm.nih.gov/28036259" }, { "database": "PubMed", "id": "28398822", "url": "https://pubmed.ncbi.nlm.nih.gov/28398822" }, { "database": "PubMed", "id": "28415610", "url": "https://pubmed.ncbi.nlm.nih.gov/28415610" }, { "database": "PubMed", "id": "29017179", "url": "https://pubmed.ncbi.nlm.nih.gov/29017179" }, { "database": "PubMed", "id": "29044520", "url": "https://pubmed.ncbi.nlm.nih.gov/29044520" }, { "database": "PubMed", "id": "29217661", "url": "https://pubmed.ncbi.nlm.nih.gov/29217661" }, { "database": "PubMed", "id": "29893976", "url": "https://pubmed.ncbi.nlm.nih.gov/29893976" }, { "database": "PubMed", "id": "29915392", "url": "https://pubmed.ncbi.nlm.nih.gov/29915392" }, { "database": "PubMed", "id": "31629677", "url": "https://pubmed.ncbi.nlm.nih.gov/31629677" }, { "database": "PubMed", "id": "31727006", "url": "https://pubmed.ncbi.nlm.nih.gov/31727006" }, { "database": "PubMed", "id": "32424140", "url": "https://pubmed.ncbi.nlm.nih.gov/32424140" }, { "database": "PubMed", "id": "32788653", "url": "https://pubmed.ncbi.nlm.nih.gov/32788653" }, { "database": "PubMed", "id": "10102273", "url": "https://pubmed.ncbi.nlm.nih.gov/10102273" } ], "site_lbl": "Thr32", "uniprot_canonical_ac": "O43524-1" } ], "record_id": "pubmed.15207915", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Induction of apoptosis by L-NMMA, via FKHRL1/ROCK pathway in human gastric cancer cells.", "journal": "Biomedical and environmental sciences : BES", "date": "2006", "authors": "Wang YZ, Feng ZQ", "reference": { "type": "PubMed", "id": "17044646", "url": "https://pubmed.ncbi.nlm.nih.gov/17044646" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O43524-1", "protein_name": "Forkhead box protein O3", "gene_name": "FOXO3", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "O43524", "url": "https://www.uniprot.org/uniprotkb/O43524" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 253, "end_pos": 253, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PKB/AKT1 and MAPKAPK5", "evidence": [ { "database": "UniProtKB", "id": "O43524", "url": "https://www.uniprot.org/uniprotkb/O43524" }, { "database": "iPTMnet", "id": "O43524", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O43524" }, { "database": "PubMed", "id": "11864996", "url": "https://pubmed.ncbi.nlm.nih.gov/11864996" }, { "database": "PubMed", "id": "17044646", "url": "https://pubmed.ncbi.nlm.nih.gov/17044646" }, { "database": "PubMed", "id": "17190839", "url": "https://pubmed.ncbi.nlm.nih.gov/17190839" }, { "database": "PubMed", "id": "19424579", "url": "https://pubmed.ncbi.nlm.nih.gov/19424579" }, { "database": "PubMed", "id": "20110348", "url": "https://pubmed.ncbi.nlm.nih.gov/20110348" }, { "database": "PubMed", "id": "20139145", "url": "https://pubmed.ncbi.nlm.nih.gov/20139145" }, { "database": "PubMed", "id": "20525153", "url": "https://pubmed.ncbi.nlm.nih.gov/20525153" }, { "database": "PubMed", "id": "20661471", "url": "https://pubmed.ncbi.nlm.nih.gov/20661471" }, { "database": "PubMed", "id": "21291561", "url": "https://pubmed.ncbi.nlm.nih.gov/21291561" }, { "database": "PubMed", "id": "21777391", "url": "https://pubmed.ncbi.nlm.nih.gov/21777391" }, { "database": "PubMed", "id": "22820736", "url": "https://pubmed.ncbi.nlm.nih.gov/22820736" }, { "database": "PubMed", "id": "23257900", "url": "https://pubmed.ncbi.nlm.nih.gov/23257900" }, { "database": "PubMed", "id": "23392169", "url": "https://pubmed.ncbi.nlm.nih.gov/23392169" }, { "database": "PubMed", "id": "23805378", "url": "https://pubmed.ncbi.nlm.nih.gov/23805378" }, { "database": "PubMed", "id": "23819460", "url": "https://pubmed.ncbi.nlm.nih.gov/23819460" }, { "database": "PubMed", "id": "24339862", "url": "https://pubmed.ncbi.nlm.nih.gov/24339862" }, { "database": "PubMed", "id": "24586650", "url": "https://pubmed.ncbi.nlm.nih.gov/24586650" }, { "database": "PubMed", "id": "24858012", "url": "https://pubmed.ncbi.nlm.nih.gov/24858012" }, { "database": "PubMed", "id": "25191523", "url": "https://pubmed.ncbi.nlm.nih.gov/25191523" }, { "database": "PubMed", "id": "25521510", "url": "https://pubmed.ncbi.nlm.nih.gov/25521510" }, { "database": "PubMed", "id": "26446641", "url": "https://pubmed.ncbi.nlm.nih.gov/26446641" }, { "database": "PubMed", "id": "26643256", "url": "https://pubmed.ncbi.nlm.nih.gov/26643256" }, { "database": "PubMed", "id": "27411103", "url": "https://pubmed.ncbi.nlm.nih.gov/27411103" }, { "database": "PubMed", "id": "27769056", "url": "https://pubmed.ncbi.nlm.nih.gov/27769056" }, { "database": "PubMed", "id": "27856257", "url": "https://pubmed.ncbi.nlm.nih.gov/27856257" }, { "database": "PubMed", "id": "28036259", "url": "https://pubmed.ncbi.nlm.nih.gov/28036259" }, { "database": "PubMed", "id": "28164237", "url": "https://pubmed.ncbi.nlm.nih.gov/28164237" }, { "database": "PubMed", "id": "28969041", "url": "https://pubmed.ncbi.nlm.nih.gov/28969041" }, { "database": "PubMed", "id": "29017179", "url": "https://pubmed.ncbi.nlm.nih.gov/29017179" }, { "database": "PubMed", "id": "29099866", "url": "https://pubmed.ncbi.nlm.nih.gov/29099866" }, { "database": "PubMed", "id": "29217661", "url": "https://pubmed.ncbi.nlm.nih.gov/29217661" }, { "database": "PubMed", "id": "29893976", "url": "https://pubmed.ncbi.nlm.nih.gov/29893976" }, { "database": "PubMed", "id": "30671548", "url": "https://pubmed.ncbi.nlm.nih.gov/30671548" }, { "database": "PubMed", "id": "30674870", "url": "https://pubmed.ncbi.nlm.nih.gov/30674870" }, { "database": "PubMed", "id": "31100089", "url": "https://pubmed.ncbi.nlm.nih.gov/31100089" }, { "database": "PubMed", "id": "31197106", "url": "https://pubmed.ncbi.nlm.nih.gov/31197106" }, { "database": "PubMed", "id": "31506431", "url": "https://pubmed.ncbi.nlm.nih.gov/31506431" }, { "database": "PubMed", "id": "31629677", "url": "https://pubmed.ncbi.nlm.nih.gov/31629677" }, { "database": "PubMed", "id": "31902744", "url": "https://pubmed.ncbi.nlm.nih.gov/31902744" }, { "database": "PubMed", "id": "32347651", "url": "https://pubmed.ncbi.nlm.nih.gov/32347651" }, { "database": "PubMed", "id": "32406610", "url": "https://pubmed.ncbi.nlm.nih.gov/32406610" }, { "database": "PubMed", "id": "32424140", "url": "https://pubmed.ncbi.nlm.nih.gov/32424140" }, { "database": "PubMed", "id": "32788653", "url": "https://pubmed.ncbi.nlm.nih.gov/32788653" }, { "database": "PubMed", "id": "33408225", "url": "https://pubmed.ncbi.nlm.nih.gov/33408225" }, { "database": "PubMed", "id": "34475505", "url": "https://pubmed.ncbi.nlm.nih.gov/34475505" }, { "database": "PubMed", "id": "35874228", "url": "https://pubmed.ncbi.nlm.nih.gov/35874228" }, { "database": "PubMed", "id": "21329882", "url": "https://pubmed.ncbi.nlm.nih.gov/21329882" }, { "database": "PubMed", "id": "30513302", "url": "https://pubmed.ncbi.nlm.nih.gov/30513302" }, { "database": "PubMed", "id": "10102273", "url": "https://pubmed.ncbi.nlm.nih.gov/10102273" } ], "site_lbl": "Ser253", "uniprot_canonical_ac": "O43524-1" }, { "start_pos": 32, "end_pos": 32, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine; by PKB/AKT1", "evidence": [ { "database": "UniProtKB", "id": "O43524", "url": "https://www.uniprot.org/uniprotkb/O43524" }, { "database": "iPTMnet", "id": "O43524", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O43524" }, { "database": "PubMed", "id": "11154281", "url": "https://pubmed.ncbi.nlm.nih.gov/11154281" }, { "database": "PubMed", "id": "11864996", "url": "https://pubmed.ncbi.nlm.nih.gov/11864996" }, { "database": "PubMed", "id": "12913110", "url": "https://pubmed.ncbi.nlm.nih.gov/12913110" }, { "database": "PubMed", "id": "15207915", "url": "https://pubmed.ncbi.nlm.nih.gov/15207915" }, { "database": "PubMed", "id": "17044646", "url": "https://pubmed.ncbi.nlm.nih.gov/17044646" }, { "database": "PubMed", "id": "17077388", "url": "https://pubmed.ncbi.nlm.nih.gov/17077388" }, { "database": "PubMed", "id": "17190839", "url": "https://pubmed.ncbi.nlm.nih.gov/17190839" }, { "database": "PubMed", "id": "18794113", "url": "https://pubmed.ncbi.nlm.nih.gov/18794113" }, { "database": "PubMed", "id": "18937079", "url": "https://pubmed.ncbi.nlm.nih.gov/18937079" }, { "database": "PubMed", "id": "20110348", "url": "https://pubmed.ncbi.nlm.nih.gov/20110348" }, { "database": "PubMed", "id": "20211546", "url": "https://pubmed.ncbi.nlm.nih.gov/20211546" }, { "database": "PubMed", "id": "20525153", "url": "https://pubmed.ncbi.nlm.nih.gov/20525153" }, { "database": "PubMed", "id": "20643654", "url": "https://pubmed.ncbi.nlm.nih.gov/20643654" }, { "database": "PubMed", "id": "20840854", "url": "https://pubmed.ncbi.nlm.nih.gov/20840854" }, { "database": "PubMed", "id": "20950443", "url": "https://pubmed.ncbi.nlm.nih.gov/20950443" }, { "database": "PubMed", "id": "21452041", "url": "https://pubmed.ncbi.nlm.nih.gov/21452041" }, { "database": "PubMed", "id": "21639915", "url": "https://pubmed.ncbi.nlm.nih.gov/21639915" }, { "database": "PubMed", "id": "22820736", "url": "https://pubmed.ncbi.nlm.nih.gov/22820736" }, { "database": "PubMed", "id": "22848740", "url": "https://pubmed.ncbi.nlm.nih.gov/22848740" }, { "database": "PubMed", "id": "22928011", "url": "https://pubmed.ncbi.nlm.nih.gov/22928011" }, { "database": "PubMed", "id": "22988968", "url": "https://pubmed.ncbi.nlm.nih.gov/22988968" }, { "database": "PubMed", "id": "23257900", "url": "https://pubmed.ncbi.nlm.nih.gov/23257900" }, { "database": "PubMed", "id": "23568341", "url": "https://pubmed.ncbi.nlm.nih.gov/23568341" }, { "database": "PubMed", "id": "23661003", "url": "https://pubmed.ncbi.nlm.nih.gov/23661003" }, { "database": "PubMed", "id": "24339862", "url": "https://pubmed.ncbi.nlm.nih.gov/24339862" }, { "database": "PubMed", "id": "24493314", "url": "https://pubmed.ncbi.nlm.nih.gov/24493314" }, { "database": "PubMed", "id": "24586650", "url": "https://pubmed.ncbi.nlm.nih.gov/24586650" }, { "database": "PubMed", "id": "24814195", "url": "https://pubmed.ncbi.nlm.nih.gov/24814195" }, { "database": "PubMed", "id": "24954032", "url": "https://pubmed.ncbi.nlm.nih.gov/24954032" }, { "database": "PubMed", "id": "25503443", "url": "https://pubmed.ncbi.nlm.nih.gov/25503443" }, { "database": "PubMed", "id": "25521510", "url": "https://pubmed.ncbi.nlm.nih.gov/25521510" }, { "database": "PubMed", "id": "25603236", "url": "https://pubmed.ncbi.nlm.nih.gov/25603236" }, { "database": "PubMed", "id": "25611382", "url": "https://pubmed.ncbi.nlm.nih.gov/25611382" }, { "database": "PubMed", "id": "26446641", "url": "https://pubmed.ncbi.nlm.nih.gov/26446641" }, { "database": "PubMed", "id": "26674329", "url": "https://pubmed.ncbi.nlm.nih.gov/26674329" }, { "database": "PubMed", "id": "27602284", "url": "https://pubmed.ncbi.nlm.nih.gov/27602284" }, { "database": "PubMed", "id": "27769056", "url": "https://pubmed.ncbi.nlm.nih.gov/27769056" }, { "database": "PubMed", "id": "27856257", "url": "https://pubmed.ncbi.nlm.nih.gov/27856257" }, { "database": "PubMed", "id": "28036259", "url": "https://pubmed.ncbi.nlm.nih.gov/28036259" }, { "database": "PubMed", "id": "28398822", "url": "https://pubmed.ncbi.nlm.nih.gov/28398822" }, { "database": "PubMed", "id": "28415610", "url": "https://pubmed.ncbi.nlm.nih.gov/28415610" }, { "database": "PubMed", "id": "29017179", "url": "https://pubmed.ncbi.nlm.nih.gov/29017179" }, { "database": "PubMed", "id": "29044520", "url": "https://pubmed.ncbi.nlm.nih.gov/29044520" }, { "database": "PubMed", "id": "29217661", "url": "https://pubmed.ncbi.nlm.nih.gov/29217661" }, { "database": "PubMed", "id": "29893976", "url": "https://pubmed.ncbi.nlm.nih.gov/29893976" }, { "database": "PubMed", "id": "29915392", "url": "https://pubmed.ncbi.nlm.nih.gov/29915392" }, { "database": "PubMed", "id": "31629677", "url": "https://pubmed.ncbi.nlm.nih.gov/31629677" }, { "database": "PubMed", "id": "31727006", "url": "https://pubmed.ncbi.nlm.nih.gov/31727006" }, { "database": "PubMed", "id": "32424140", "url": "https://pubmed.ncbi.nlm.nih.gov/32424140" }, { "database": "PubMed", "id": "32788653", "url": "https://pubmed.ncbi.nlm.nih.gov/32788653" }, { "database": "PubMed", "id": "10102273", "url": "https://pubmed.ncbi.nlm.nih.gov/10102273" } ], "site_lbl": "Thr32", "uniprot_canonical_ac": "O43524-1" } ], "record_id": "pubmed.17044646", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Inhibition of wild-type p66ShcA in mesangial cells prevents glycooxidant-dependent FOXO3a regulation and promotes the survival phenotype.", "journal": "American journal of physiology. Renal physiology", "date": "2007", "authors": "Chintapalli J, Yang S, Opawumi D, Goyal SR, Shamsuddin N, Malhotra A, Reiss K, Meggs LG", "reference": { "type": "PubMed", "id": "17077388", "url": "https://pubmed.ncbi.nlm.nih.gov/17077388" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O43524-1", "protein_name": "Forkhead box protein O3", "gene_name": "FOXO3", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "O43524", "url": "https://www.uniprot.org/uniprotkb/O43524" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 32, "end_pos": 32, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine; by PKB/AKT1", "evidence": [ { "database": "UniProtKB", "id": "O43524", "url": "https://www.uniprot.org/uniprotkb/O43524" }, { "database": "iPTMnet", "id": "O43524", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O43524" }, { "database": "PubMed", "id": "11154281", "url": "https://pubmed.ncbi.nlm.nih.gov/11154281" }, { "database": "PubMed", "id": "11864996", "url": "https://pubmed.ncbi.nlm.nih.gov/11864996" }, { "database": "PubMed", "id": "12913110", "url": "https://pubmed.ncbi.nlm.nih.gov/12913110" }, { "database": "PubMed", "id": "15207915", "url": "https://pubmed.ncbi.nlm.nih.gov/15207915" }, { "database": "PubMed", "id": "17044646", "url": "https://pubmed.ncbi.nlm.nih.gov/17044646" }, { "database": "PubMed", "id": "17077388", "url": "https://pubmed.ncbi.nlm.nih.gov/17077388" }, { "database": "PubMed", "id": "17190839", "url": "https://pubmed.ncbi.nlm.nih.gov/17190839" }, { "database": "PubMed", "id": "18794113", "url": "https://pubmed.ncbi.nlm.nih.gov/18794113" }, { "database": "PubMed", "id": "18937079", "url": "https://pubmed.ncbi.nlm.nih.gov/18937079" }, { "database": "PubMed", "id": "20110348", "url": "https://pubmed.ncbi.nlm.nih.gov/20110348" }, { "database": "PubMed", "id": "20211546", "url": "https://pubmed.ncbi.nlm.nih.gov/20211546" }, { "database": "PubMed", "id": "20525153", "url": "https://pubmed.ncbi.nlm.nih.gov/20525153" }, { "database": "PubMed", "id": "20643654", "url": "https://pubmed.ncbi.nlm.nih.gov/20643654" }, { "database": "PubMed", "id": "20840854", "url": "https://pubmed.ncbi.nlm.nih.gov/20840854" }, { "database": "PubMed", "id": "20950443", "url": "https://pubmed.ncbi.nlm.nih.gov/20950443" }, { "database": "PubMed", "id": "21452041", "url": "https://pubmed.ncbi.nlm.nih.gov/21452041" }, { "database": "PubMed", "id": "21639915", "url": "https://pubmed.ncbi.nlm.nih.gov/21639915" }, { "database": "PubMed", "id": "22820736", "url": "https://pubmed.ncbi.nlm.nih.gov/22820736" }, { "database": "PubMed", "id": "22848740", "url": "https://pubmed.ncbi.nlm.nih.gov/22848740" }, { "database": "PubMed", "id": "22928011", "url": "https://pubmed.ncbi.nlm.nih.gov/22928011" }, { "database": "PubMed", "id": "22988968", "url": "https://pubmed.ncbi.nlm.nih.gov/22988968" }, { "database": "PubMed", "id": "23257900", "url": "https://pubmed.ncbi.nlm.nih.gov/23257900" }, { "database": "PubMed", "id": "23568341", "url": "https://pubmed.ncbi.nlm.nih.gov/23568341" }, { "database": "PubMed", "id": "23661003", "url": "https://pubmed.ncbi.nlm.nih.gov/23661003" }, { "database": "PubMed", "id": "24339862", "url": "https://pubmed.ncbi.nlm.nih.gov/24339862" }, { "database": "PubMed", "id": "24493314", "url": "https://pubmed.ncbi.nlm.nih.gov/24493314" }, { "database": "PubMed", "id": "24586650", "url": "https://pubmed.ncbi.nlm.nih.gov/24586650" }, { "database": "PubMed", "id": "24814195", "url": "https://pubmed.ncbi.nlm.nih.gov/24814195" }, { "database": "PubMed", "id": "24954032", "url": "https://pubmed.ncbi.nlm.nih.gov/24954032" }, { "database": "PubMed", "id": "25503443", "url": "https://pubmed.ncbi.nlm.nih.gov/25503443" }, { "database": "PubMed", "id": "25521510", "url": "https://pubmed.ncbi.nlm.nih.gov/25521510" }, { "database": "PubMed", "id": "25603236", "url": "https://pubmed.ncbi.nlm.nih.gov/25603236" }, { "database": "PubMed", "id": "25611382", "url": "https://pubmed.ncbi.nlm.nih.gov/25611382" }, { "database": "PubMed", "id": "26446641", "url": "https://pubmed.ncbi.nlm.nih.gov/26446641" }, { "database": "PubMed", "id": "26674329", "url": "https://pubmed.ncbi.nlm.nih.gov/26674329" }, { "database": "PubMed", "id": "27602284", "url": "https://pubmed.ncbi.nlm.nih.gov/27602284" }, { "database": "PubMed", "id": "27769056", "url": "https://pubmed.ncbi.nlm.nih.gov/27769056" }, { "database": "PubMed", "id": "27856257", "url": "https://pubmed.ncbi.nlm.nih.gov/27856257" }, { "database": "PubMed", "id": "28036259", "url": "https://pubmed.ncbi.nlm.nih.gov/28036259" }, { "database": "PubMed", "id": "28398822", "url": "https://pubmed.ncbi.nlm.nih.gov/28398822" }, { "database": "PubMed", "id": "28415610", "url": "https://pubmed.ncbi.nlm.nih.gov/28415610" }, { "database": "PubMed", "id": "29017179", "url": "https://pubmed.ncbi.nlm.nih.gov/29017179" }, { "database": "PubMed", "id": "29044520", "url": "https://pubmed.ncbi.nlm.nih.gov/29044520" }, { "database": "PubMed", "id": "29217661", "url": "https://pubmed.ncbi.nlm.nih.gov/29217661" }, { "database": "PubMed", "id": "29893976", "url": "https://pubmed.ncbi.nlm.nih.gov/29893976" }, { "database": "PubMed", "id": "29915392", "url": "https://pubmed.ncbi.nlm.nih.gov/29915392" }, { "database": "PubMed", "id": "31629677", "url": "https://pubmed.ncbi.nlm.nih.gov/31629677" }, { "database": "PubMed", "id": "31727006", "url": "https://pubmed.ncbi.nlm.nih.gov/31727006" }, { "database": "PubMed", "id": "32424140", "url": "https://pubmed.ncbi.nlm.nih.gov/32424140" }, { "database": "PubMed", "id": "32788653", "url": "https://pubmed.ncbi.nlm.nih.gov/32788653" }, { "database": "PubMed", "id": "10102273", "url": "https://pubmed.ncbi.nlm.nih.gov/10102273" } ], "site_lbl": "Thr32", "uniprot_canonical_ac": "O43524-1" } ], "record_id": "pubmed.17077388", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The energy sensor AMP-activated protein kinase directly regulates the mammalian FOXO3 transcription factor.", "journal": "The Journal of biological chemistry", "date": "2007", "authors": "Greer EL, Oskoui PR, Banko MR, Maniar JM, Gygi MP, Gygi SP, Brunet A", "reference": { "type": "PubMed", "id": "17711846", "url": "https://pubmed.ncbi.nlm.nih.gov/17711846" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O43524-1", "protein_name": "Forkhead box protein O3", "gene_name": "FOXO3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13131-1", "protein_name": "5'-AMP-activated protein kinase catalytic subunit alpha-1", "gene_name": "PRKAA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P54646-1", "protein_name": "5'-AMP-activated protein kinase catalytic subunit alpha-2", "gene_name": "PRKAA2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "O43524", "url": "https://www.uniprot.org/uniprotkb/O43524" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 179, "end_pos": 179, "sequence_org": "T", "sequence_mut": "A", "comment": "Decreased phosphorylation by AMPK and impaired ability to transactivate a reporter gene; when associated with A-399; A-413; A-555; A-588 and A-626.", "evidence": [ { "database": "UniProtKB", "id": "O43524", "url": "https://www.uniprot.org/uniprotkb/O43524" }, { "database": "PubMed", "id": "17711846", "url": "https://pubmed.ncbi.nlm.nih.gov/17711846" } ], "uniprot_canonical_ac": "O43524-1" }, { "start_pos": 399, "end_pos": 399, "sequence_org": "S", "sequence_mut": "A", "comment": "Decreased phosphorylation by AMPK and impaired ability to transactivate a reporter gene; when associated with A-179; A-413; A-555; A-588 and A-626.", "evidence": [ { "database": "UniProtKB", "id": "O43524", "url": "https://www.uniprot.org/uniprotkb/O43524" }, { "database": "PubMed", "id": "17711846", "url": "https://pubmed.ncbi.nlm.nih.gov/17711846" } ], "uniprot_canonical_ac": "O43524-1" }, { "start_pos": 413, "end_pos": 413, "sequence_org": "S", "sequence_mut": "A", "comment": "Decreased phosphorylation by AMPK and impaired ability to transactivate a reporter gene; when associated with A-179; A-399; A-555; A-588 and A-626.", "evidence": [ { "database": "UniProtKB", "id": "O43524", "url": "https://www.uniprot.org/uniprotkb/O43524" }, { "database": "PubMed", "id": "17711846", "url": "https://pubmed.ncbi.nlm.nih.gov/17711846" } ], "uniprot_canonical_ac": "O43524-1" }, { "start_pos": 555, "end_pos": 555, "sequence_org": "S", "sequence_mut": "A", "comment": "Decreased phosphorylation by AMPK and impaired ability to transactivate a reporter gene; when associated with A-179; A-399; A-413; A-588 and A-626.", "evidence": [ { "database": "UniProtKB", "id": "O43524", "url": "https://www.uniprot.org/uniprotkb/O43524" }, { "database": "PubMed", "id": "17711846", "url": "https://pubmed.ncbi.nlm.nih.gov/17711846" } ], "uniprot_canonical_ac": "O43524-1" }, { "start_pos": 588, "end_pos": 588, "sequence_org": "S", "sequence_mut": "A", "comment": "Decreased phosphorylation by AMPK and impaired ability to transactivate a reporter gene; when associated with A-179; A-399; A-413; A-555 and A-626.", "evidence": [ { "database": "UniProtKB", "id": "O43524", "url": "https://www.uniprot.org/uniprotkb/O43524" }, { "database": "PubMed", "id": "17711846", "url": "https://pubmed.ncbi.nlm.nih.gov/17711846" } ], "uniprot_canonical_ac": "O43524-1" }, { "start_pos": 626, "end_pos": 626, "sequence_org": "S", "sequence_mut": "A", "comment": "Decreased phosphorylation by AMPK and impaired ability to transactivate a reporter gene; when associated with A-179; A-399; A-413; A-555 and A-588.", "evidence": [ { "database": "UniProtKB", "id": "O43524", "url": "https://www.uniprot.org/uniprotkb/O43524" }, { "database": "PubMed", "id": "17711846", "url": "https://pubmed.ncbi.nlm.nih.gov/17711846" } ], "uniprot_canonical_ac": "O43524-1" } ], "phosphorylation": [ { "start_pos": 179, "end_pos": 179, "kinase_uniprot_canonical_ac": "Q13131-1", "kinase_gene_name": "PRKAA1", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O43524", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O43524" }, { "database": "PubMed", "id": "17711846", "url": "https://pubmed.ncbi.nlm.nih.gov/17711846" } ], "site_lbl": "Thr179", "uniprot_canonical_ac": "O43524-1" }, { "start_pos": 179, "end_pos": 179, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine; by AMPK", "evidence": [ { "database": "UniProtKB", "id": "O43524", "url": "https://www.uniprot.org/uniprotkb/O43524" }, { "database": "iPTMnet", "id": "O43524", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O43524" }, { "database": "PubMed", "id": "17711846", "url": "https://pubmed.ncbi.nlm.nih.gov/17711846" } ], "site_lbl": "Thr179", "uniprot_canonical_ac": "O43524-1" }, { "start_pos": 399, "end_pos": 399, "kinase_uniprot_canonical_ac": "Q13131-1", "kinase_gene_name": "PRKAA1", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O43524", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O43524" }, { "database": "PubMed", "id": "17711846", "url": "https://pubmed.ncbi.nlm.nih.gov/17711846" } ], "site_lbl": "Ser399", "uniprot_canonical_ac": "O43524-1" }, { "start_pos": 399, "end_pos": 399, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by AMPK", "evidence": [ { "database": "UniProtKB", "id": "O43524", "url": "https://www.uniprot.org/uniprotkb/O43524" }, { "database": "iPTMnet", "id": "O43524", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O43524" }, { "database": "PubMed", "id": "17711846", "url": "https://pubmed.ncbi.nlm.nih.gov/17711846" } ], "site_lbl": "Ser399", "uniprot_canonical_ac": "O43524-1" }, { "start_pos": 413, "end_pos": 413, "kinase_uniprot_canonical_ac": "P54646-1", "kinase_gene_name": "PRKAA2", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O43524", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O43524" }, { "database": "PubMed", "id": "17711846", "url": "https://pubmed.ncbi.nlm.nih.gov/17711846" } ], "site_lbl": "Ser413", "uniprot_canonical_ac": "O43524-1" }, { "start_pos": 413, "end_pos": 413, "kinase_uniprot_canonical_ac": "Q13131-1", "kinase_gene_name": "PRKAA1", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O43524", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O43524" }, { "database": "PubMed", "id": "17711846", "url": "https://pubmed.ncbi.nlm.nih.gov/17711846" } ], "site_lbl": "Ser413", "uniprot_canonical_ac": "O43524-1" }, { "start_pos": 413, "end_pos": 413, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by AMPK", "evidence": [ { "database": "UniProtKB", "id": "O43524", "url": "https://www.uniprot.org/uniprotkb/O43524" }, { "database": "iPTMnet", "id": "O43524", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O43524" }, { "database": "PubMed", "id": "17711846", "url": "https://pubmed.ncbi.nlm.nih.gov/17711846" }, { "database": "PubMed", "id": "22732497", "url": "https://pubmed.ncbi.nlm.nih.gov/22732497" }, { "database": "PubMed", "id": "22848740", "url": "https://pubmed.ncbi.nlm.nih.gov/22848740" }, { "database": "PubMed", "id": "24858012", "url": "https://pubmed.ncbi.nlm.nih.gov/24858012" }, { "database": "PubMed", "id": "26373689", "url": "https://pubmed.ncbi.nlm.nih.gov/26373689" }, { "database": "PubMed", "id": "29269868", "url": "https://pubmed.ncbi.nlm.nih.gov/29269868" }, { "database": "PubMed", "id": "31345573", "url": "https://pubmed.ncbi.nlm.nih.gov/31345573" }, { "database": "PubMed", "id": "32406610", "url": "https://pubmed.ncbi.nlm.nih.gov/32406610" }, { "database": "PubMed", "id": "33953705", "url": "https://pubmed.ncbi.nlm.nih.gov/33953705" }, { "database": "PubMed", "id": "23186163", "url": "https://pubmed.ncbi.nlm.nih.gov/23186163" } ], "site_lbl": "Ser413", "uniprot_canonical_ac": "O43524-1" }, { "start_pos": 555, "end_pos": 555, "kinase_uniprot_canonical_ac": "Q13131-1", "kinase_gene_name": "PRKAA1", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O43524", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O43524" }, { "database": "PubMed", "id": "17711846", "url": "https://pubmed.ncbi.nlm.nih.gov/17711846" } ], "site_lbl": "Ser555", "uniprot_canonical_ac": "O43524-1" }, { "start_pos": 555, "end_pos": 555, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by AMPK and MAPKAPK5", "evidence": [ { "database": "UniProtKB", "id": "O43524", "url": "https://www.uniprot.org/uniprotkb/O43524" }, { "database": "iPTMnet", "id": "O43524", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O43524" }, { "database": "PubMed", "id": "17711846", "url": "https://pubmed.ncbi.nlm.nih.gov/17711846" }, { "database": "PubMed", "id": "21329882", "url": "https://pubmed.ncbi.nlm.nih.gov/21329882" } ], "site_lbl": "Ser555", "uniprot_canonical_ac": "O43524-1" }, { "start_pos": 588, "end_pos": 588, "kinase_uniprot_canonical_ac": "P54646-1", "kinase_gene_name": "PRKAA2", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O43524", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O43524" }, { "database": "PubMed", "id": "17711846", "url": "https://pubmed.ncbi.nlm.nih.gov/17711846" } ], "site_lbl": "Ser588", "uniprot_canonical_ac": "O43524-1" }, { "start_pos": 588, "end_pos": 588, "kinase_uniprot_canonical_ac": "Q13131-1", "kinase_gene_name": "PRKAA1", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O43524", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O43524" }, { "database": "PubMed", "id": "17711846", "url": "https://pubmed.ncbi.nlm.nih.gov/17711846" } ], "site_lbl": "Ser588", "uniprot_canonical_ac": "O43524-1" }, { "start_pos": 588, "end_pos": 588, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by AMPK", "evidence": [ { "database": "UniProtKB", "id": "O43524", "url": "https://www.uniprot.org/uniprotkb/O43524" }, { "database": "iPTMnet", "id": "O43524", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O43524" }, { "database": "PubMed", "id": "17711846", "url": "https://pubmed.ncbi.nlm.nih.gov/17711846" }, { "database": "PubMed", "id": "27492225", "url": "https://pubmed.ncbi.nlm.nih.gov/27492225" } ], "site_lbl": "Ser588", "uniprot_canonical_ac": "O43524-1" }, { "start_pos": 626, "end_pos": 626, "kinase_uniprot_canonical_ac": "Q13131-1", "kinase_gene_name": "PRKAA1", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O43524", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O43524" }, { "database": "PubMed", "id": "17711846", "url": "https://pubmed.ncbi.nlm.nih.gov/17711846" } ], "site_lbl": "Ser626", "uniprot_canonical_ac": "O43524-1" }, { "start_pos": 626, "end_pos": 626, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by AMPK", "evidence": [ { "database": "UniProtKB", "id": "O43524", "url": "https://www.uniprot.org/uniprotkb/O43524" }, { "database": "iPTMnet", "id": "O43524", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O43524" }, { "database": "PubMed", "id": "17711846", "url": "https://pubmed.ncbi.nlm.nih.gov/17711846" } ], "site_lbl": "Ser626", "uniprot_canonical_ac": "O43524-1" } ], "record_id": "pubmed.17711846", "abstract": "", "glycosylation": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 14 }, { "field": "total_sites", "count": 6 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Crystal structure of the human FOXO3a-DBD/DNA complex suggests the effects of post-translational modification.", "journal": "Nucleic acids research", "date": "2007", "authors": "Tsai KL, Sun YJ, Huang CY, Yang JY, Hung MC, Hsiao CD", "reference": { "type": "PubMed", "id": "17940099", "url": "https://pubmed.ncbi.nlm.nih.gov/17940099" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O43524-1", "protein_name": "Forkhead box protein O3", "gene_name": "FOXO3", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "O43524", "url": "https://www.uniprot.org/uniprotkb/O43524" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 242, "end_pos": 242, "sequence_org": "K", "sequence_mut": "A", "comment": "Slightly decreases DNA affinity.", "evidence": [ { "database": "UniProtKB", "id": "O43524", "url": "https://www.uniprot.org/uniprotkb/O43524" }, { "database": "PubMed", "id": "17940099", "url": "https://pubmed.ncbi.nlm.nih.gov/17940099" }, { "database": "PubMed", "id": "21841822", "url": "https://pubmed.ncbi.nlm.nih.gov/21841822" } ], "uniprot_canonical_ac": "O43524-1" }, { "start_pos": 242, "end_pos": 242, "sequence_org": "K", "sequence_mut": "R", "comment": "Reduces acetylation, increases interaction with SKP2 and inhibits FOXO3 ubiquitination and degradation; when associated with R-259; R-290 and R-569.", "evidence": [ { "database": "UniProtKB", "id": "O43524", "url": "https://www.uniprot.org/uniprotkb/O43524" }, { "database": "PubMed", "id": "17940099", "url": "https://pubmed.ncbi.nlm.nih.gov/17940099" }, { "database": "PubMed", "id": "21841822", "url": "https://pubmed.ncbi.nlm.nih.gov/21841822" } ], "uniprot_canonical_ac": "O43524-1" }, { "start_pos": 245, "end_pos": 245, "sequence_org": "K", "sequence_mut": "A", "comment": "Decreases DNA affinity.", "evidence": [ { "database": "UniProtKB", "id": "O43524", "url": "https://www.uniprot.org/uniprotkb/O43524" }, { "database": "PubMed", "id": "17940099", "url": "https://pubmed.ncbi.nlm.nih.gov/17940099" } ], "uniprot_canonical_ac": "O43524-1" } ], "record_id": "pubmed.17940099", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "ERK promotes tumorigenesis by inhibiting FOXO3a via MDM2-mediated degradation.", "journal": "Nature cell biology", "date": "2008", "authors": "Yang JY, Zong CS, Xia W, Yamaguchi H, Ding Q, Xie X, Lang JY, Lai CC, Chang CJ, Huang WC, Huang H, Kuo HP, Lee DF, Li LY, Lien HC, Cheng X, Chang KJ, Hsiao CD, Tsai FJ, Tsai CH, Sahin AA, Muller WJ, Mills GB, Yu D, Hortobagyi GN, Hung MC", "reference": { "type": "PubMed", "id": "18204439", "url": "https://pubmed.ncbi.nlm.nih.gov/18204439" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O43524-1", "protein_name": "Forkhead box protein O3", "gene_name": "FOXO3", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "O43524", "url": "https://www.uniprot.org/uniprotkb/O43524" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 294, "end_pos": 294, "kinase_uniprot_canonical_ac": "P28482-1", "kinase_gene_name": "MAPK1", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O43524", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O43524" }, { "database": "PubMed", "id": "22128155", "url": "https://pubmed.ncbi.nlm.nih.gov/22128155" }, { "database": "PubMed", "id": "18204439", "url": "https://pubmed.ncbi.nlm.nih.gov/18204439" } ], "site_lbl": "Ser294", "uniprot_canonical_ac": "O43524-1" }, { "start_pos": 344, "end_pos": 344, "kinase_uniprot_canonical_ac": "P28482-1", "kinase_gene_name": "MAPK1", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O43524", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O43524" }, { "database": "PubMed", "id": "22128155", "url": "https://pubmed.ncbi.nlm.nih.gov/22128155" }, { "database": "PubMed", "id": "18204439", "url": "https://pubmed.ncbi.nlm.nih.gov/18204439" } ], "site_lbl": "Ser344", "uniprot_canonical_ac": "O43524-1" }, { "start_pos": 425, "end_pos": 425, "kinase_uniprot_canonical_ac": "P28482-1", "kinase_gene_name": "MAPK1", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O43524", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O43524" }, { "database": "PubMed", "id": "22128155", "url": "https://pubmed.ncbi.nlm.nih.gov/22128155" }, { "database": "PubMed", "id": "18204439", "url": "https://pubmed.ncbi.nlm.nih.gov/18204439" } ], "site_lbl": "Ser425", "uniprot_canonical_ac": "O43524-1" } ], "record_id": "pubmed.18204439", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 3 }, { "field": "total_sites", "count": 3 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "LKB1 is necessary for Akt-mediated phosphorylation of proapoptotic proteins.", "journal": "Cancer research", "date": "2008", "authors": "Zhong D, Liu X, Khuri FR, Sun SY, Vertino PM, Zhou W", "reference": { "type": "PubMed", "id": "18794113", "url": "https://pubmed.ncbi.nlm.nih.gov/18794113" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O43524-1", "protein_name": "Forkhead box protein O3", "gene_name": "FOXO3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92934-1", "protein_name": "Bcl2-associated agonist of cell death", "gene_name": "BAD", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "O43524", "url": "https://www.uniprot.org/uniprotkb/O43524" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 32, "end_pos": 32, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine; by PKB/AKT1", "evidence": [ { "database": "UniProtKB", "id": "O43524", "url": "https://www.uniprot.org/uniprotkb/O43524" }, { "database": "iPTMnet", "id": "O43524", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O43524" }, { "database": "PubMed", "id": "11154281", "url": "https://pubmed.ncbi.nlm.nih.gov/11154281" }, { "database": "PubMed", "id": "11864996", "url": "https://pubmed.ncbi.nlm.nih.gov/11864996" }, { "database": "PubMed", "id": "12913110", "url": "https://pubmed.ncbi.nlm.nih.gov/12913110" }, { "database": "PubMed", "id": "15207915", "url": "https://pubmed.ncbi.nlm.nih.gov/15207915" }, { "database": "PubMed", "id": "17044646", "url": "https://pubmed.ncbi.nlm.nih.gov/17044646" }, { "database": "PubMed", "id": "17077388", "url": "https://pubmed.ncbi.nlm.nih.gov/17077388" }, { "database": "PubMed", "id": "17190839", "url": "https://pubmed.ncbi.nlm.nih.gov/17190839" }, { "database": "PubMed", "id": "18794113", "url": "https://pubmed.ncbi.nlm.nih.gov/18794113" }, { "database": "PubMed", "id": "18937079", "url": "https://pubmed.ncbi.nlm.nih.gov/18937079" }, { "database": "PubMed", "id": "20110348", "url": "https://pubmed.ncbi.nlm.nih.gov/20110348" }, { "database": "PubMed", "id": "20211546", "url": "https://pubmed.ncbi.nlm.nih.gov/20211546" }, { "database": "PubMed", "id": "20525153", "url": "https://pubmed.ncbi.nlm.nih.gov/20525153" }, { "database": "PubMed", "id": "20643654", "url": "https://pubmed.ncbi.nlm.nih.gov/20643654" }, { "database": "PubMed", "id": "20840854", "url": "https://pubmed.ncbi.nlm.nih.gov/20840854" }, { "database": "PubMed", "id": "20950443", "url": "https://pubmed.ncbi.nlm.nih.gov/20950443" }, { "database": "PubMed", "id": "21452041", "url": "https://pubmed.ncbi.nlm.nih.gov/21452041" }, { "database": "PubMed", "id": "21639915", "url": "https://pubmed.ncbi.nlm.nih.gov/21639915" }, { "database": "PubMed", "id": "22820736", "url": "https://pubmed.ncbi.nlm.nih.gov/22820736" }, { "database": "PubMed", "id": "22848740", "url": "https://pubmed.ncbi.nlm.nih.gov/22848740" }, { "database": "PubMed", "id": "22928011", "url": "https://pubmed.ncbi.nlm.nih.gov/22928011" }, { "database": "PubMed", "id": "22988968", "url": "https://pubmed.ncbi.nlm.nih.gov/22988968" }, { "database": "PubMed", "id": "23257900", "url": "https://pubmed.ncbi.nlm.nih.gov/23257900" }, { "database": "PubMed", "id": "23568341", "url": "https://pubmed.ncbi.nlm.nih.gov/23568341" }, { "database": "PubMed", "id": "23661003", "url": "https://pubmed.ncbi.nlm.nih.gov/23661003" }, { "database": "PubMed", "id": "24339862", "url": "https://pubmed.ncbi.nlm.nih.gov/24339862" }, { "database": "PubMed", "id": "24493314", "url": "https://pubmed.ncbi.nlm.nih.gov/24493314" }, { "database": "PubMed", "id": "24586650", "url": "https://pubmed.ncbi.nlm.nih.gov/24586650" }, { "database": "PubMed", "id": "24814195", "url": "https://pubmed.ncbi.nlm.nih.gov/24814195" }, { "database": "PubMed", "id": "24954032", "url": "https://pubmed.ncbi.nlm.nih.gov/24954032" }, { "database": "PubMed", "id": "25503443", "url": "https://pubmed.ncbi.nlm.nih.gov/25503443" }, { "database": "PubMed", "id": "25521510", "url": "https://pubmed.ncbi.nlm.nih.gov/25521510" }, { "database": "PubMed", "id": "25603236", "url": "https://pubmed.ncbi.nlm.nih.gov/25603236" }, { "database": "PubMed", "id": "25611382", "url": "https://pubmed.ncbi.nlm.nih.gov/25611382" }, { "database": "PubMed", "id": "26446641", "url": "https://pubmed.ncbi.nlm.nih.gov/26446641" }, { "database": "PubMed", "id": "26674329", "url": "https://pubmed.ncbi.nlm.nih.gov/26674329" }, { "database": "PubMed", "id": "27602284", "url": "https://pubmed.ncbi.nlm.nih.gov/27602284" }, { "database": "PubMed", "id": "27769056", "url": "https://pubmed.ncbi.nlm.nih.gov/27769056" }, { "database": "PubMed", "id": "27856257", "url": "https://pubmed.ncbi.nlm.nih.gov/27856257" }, { "database": "PubMed", "id": "28036259", "url": "https://pubmed.ncbi.nlm.nih.gov/28036259" }, { "database": "PubMed", "id": "28398822", "url": "https://pubmed.ncbi.nlm.nih.gov/28398822" }, { "database": "PubMed", "id": "28415610", "url": "https://pubmed.ncbi.nlm.nih.gov/28415610" }, { "database": "PubMed", "id": "29017179", "url": "https://pubmed.ncbi.nlm.nih.gov/29017179" }, { "database": "PubMed", "id": "29044520", "url": "https://pubmed.ncbi.nlm.nih.gov/29044520" }, { "database": "PubMed", "id": "29217661", "url": "https://pubmed.ncbi.nlm.nih.gov/29217661" }, { "database": "PubMed", "id": "29893976", "url": "https://pubmed.ncbi.nlm.nih.gov/29893976" }, { "database": "PubMed", "id": "29915392", "url": "https://pubmed.ncbi.nlm.nih.gov/29915392" }, { "database": "PubMed", "id": "31629677", "url": "https://pubmed.ncbi.nlm.nih.gov/31629677" }, { "database": "PubMed", "id": "31727006", "url": "https://pubmed.ncbi.nlm.nih.gov/31727006" }, { "database": "PubMed", "id": "32424140", "url": "https://pubmed.ncbi.nlm.nih.gov/32424140" }, { "database": "PubMed", "id": "32788653", "url": "https://pubmed.ncbi.nlm.nih.gov/32788653" }, { "database": "PubMed", "id": "10102273", "url": "https://pubmed.ncbi.nlm.nih.gov/10102273" } ], "site_lbl": "Thr32", "uniprot_canonical_ac": "O43524-1" }, { "start_pos": 118, "end_pos": 118, "kinase_uniprot_canonical_ac": "P17612-1", "kinase_gene_name": "PRKACA", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q92934", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q92934" }, { "database": "PubMed", "id": "10837486", "url": "https://pubmed.ncbi.nlm.nih.gov/10837486" }, { "database": "PubMed", "id": "10949026", "url": "https://pubmed.ncbi.nlm.nih.gov/10949026" }, { "database": "PubMed", "id": "18669648", "url": "https://pubmed.ncbi.nlm.nih.gov/18669648" }, { "database": "PubMed", "id": "18707149", "url": "https://pubmed.ncbi.nlm.nih.gov/18707149" }, { "database": "PubMed", "id": "20166139", "url": "https://pubmed.ncbi.nlm.nih.gov/20166139" }, { "database": "PubMed", "id": "10230394", "url": "https://pubmed.ncbi.nlm.nih.gov/10230394" }, { "database": "PubMed", "id": "18794113", "url": "https://pubmed.ncbi.nlm.nih.gov/18794113" } ], "site_lbl": "Ser118", "uniprot_canonical_ac": "Q92934-1" }, { "start_pos": 75, "end_pos": 75, "kinase_uniprot_canonical_ac": "P17612-1", "kinase_gene_name": "PRKACA", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q92934", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q92934" }, { "database": "PubMed", "id": "10230394", "url": "https://pubmed.ncbi.nlm.nih.gov/10230394" }, { "database": "PubMed", "id": "18794113", "url": "https://pubmed.ncbi.nlm.nih.gov/18794113" } ], "site_lbl": "Ser75", "uniprot_canonical_ac": "Q92934-1" } ], "record_id": "pubmed.18794113", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 3 }, { "field": "total_sites", "count": 3 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Arsenic trioxide-induced growth arrest of human hepatocellular carcinoma cells involving FOXO3a expression and localization.", "journal": "Medical oncology (Northwood, London, England)", "date": "2009", "authors": "Fei M, Lu M, Wang Y, Zhao Y, He S, Gao S, Ke Q, Liu Y, Li P, Cui X, Shen A, Cheng C", "reference": { "type": "PubMed", "id": "18937079", "url": "https://pubmed.ncbi.nlm.nih.gov/18937079" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O43524-1", "protein_name": "Forkhead box protein O3", "gene_name": "FOXO3", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "O43524", "url": "https://www.uniprot.org/uniprotkb/O43524" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 32, "end_pos": 32, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine; by PKB/AKT1", "evidence": [ { "database": "UniProtKB", "id": "O43524", "url": "https://www.uniprot.org/uniprotkb/O43524" }, { "database": "iPTMnet", "id": "O43524", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O43524" }, { "database": "PubMed", "id": "11154281", "url": "https://pubmed.ncbi.nlm.nih.gov/11154281" }, { "database": "PubMed", "id": "11864996", "url": "https://pubmed.ncbi.nlm.nih.gov/11864996" }, { "database": "PubMed", "id": "12913110", "url": "https://pubmed.ncbi.nlm.nih.gov/12913110" }, { "database": "PubMed", "id": "15207915", "url": "https://pubmed.ncbi.nlm.nih.gov/15207915" }, { "database": "PubMed", "id": "17044646", "url": "https://pubmed.ncbi.nlm.nih.gov/17044646" }, { "database": "PubMed", "id": "17077388", "url": "https://pubmed.ncbi.nlm.nih.gov/17077388" }, { "database": "PubMed", "id": "17190839", "url": "https://pubmed.ncbi.nlm.nih.gov/17190839" }, { "database": "PubMed", "id": "18794113", "url": "https://pubmed.ncbi.nlm.nih.gov/18794113" }, { "database": "PubMed", "id": "18937079", "url": "https://pubmed.ncbi.nlm.nih.gov/18937079" }, { "database": "PubMed", "id": "20110348", "url": "https://pubmed.ncbi.nlm.nih.gov/20110348" }, { "database": "PubMed", "id": "20211546", "url": "https://pubmed.ncbi.nlm.nih.gov/20211546" }, { "database": "PubMed", "id": "20525153", "url": "https://pubmed.ncbi.nlm.nih.gov/20525153" }, { "database": "PubMed", "id": "20643654", "url": "https://pubmed.ncbi.nlm.nih.gov/20643654" }, { "database": "PubMed", "id": "20840854", "url": "https://pubmed.ncbi.nlm.nih.gov/20840854" }, { "database": "PubMed", "id": "20950443", "url": "https://pubmed.ncbi.nlm.nih.gov/20950443" }, { "database": "PubMed", "id": "21452041", "url": "https://pubmed.ncbi.nlm.nih.gov/21452041" }, { "database": "PubMed", "id": "21639915", "url": "https://pubmed.ncbi.nlm.nih.gov/21639915" }, { "database": "PubMed", "id": "22820736", "url": "https://pubmed.ncbi.nlm.nih.gov/22820736" }, { "database": "PubMed", "id": "22848740", "url": "https://pubmed.ncbi.nlm.nih.gov/22848740" }, { "database": "PubMed", "id": "22928011", "url": "https://pubmed.ncbi.nlm.nih.gov/22928011" }, { "database": "PubMed", "id": "22988968", "url": "https://pubmed.ncbi.nlm.nih.gov/22988968" }, { "database": "PubMed", "id": "23257900", "url": "https://pubmed.ncbi.nlm.nih.gov/23257900" }, { "database": "PubMed", "id": "23568341", "url": "https://pubmed.ncbi.nlm.nih.gov/23568341" }, { "database": "PubMed", "id": "23661003", "url": "https://pubmed.ncbi.nlm.nih.gov/23661003" }, { "database": "PubMed", "id": "24339862", "url": "https://pubmed.ncbi.nlm.nih.gov/24339862" }, { "database": "PubMed", "id": "24493314", "url": "https://pubmed.ncbi.nlm.nih.gov/24493314" }, { "database": "PubMed", "id": "24586650", "url": "https://pubmed.ncbi.nlm.nih.gov/24586650" }, { "database": "PubMed", "id": "24814195", "url": "https://pubmed.ncbi.nlm.nih.gov/24814195" }, { "database": "PubMed", "id": "24954032", "url": "https://pubmed.ncbi.nlm.nih.gov/24954032" }, { "database": "PubMed", "id": "25503443", "url": "https://pubmed.ncbi.nlm.nih.gov/25503443" }, { "database": "PubMed", "id": "25521510", "url": "https://pubmed.ncbi.nlm.nih.gov/25521510" }, { "database": "PubMed", "id": "25603236", "url": "https://pubmed.ncbi.nlm.nih.gov/25603236" }, { "database": "PubMed", "id": "25611382", "url": "https://pubmed.ncbi.nlm.nih.gov/25611382" }, { "database": "PubMed", "id": "26446641", "url": "https://pubmed.ncbi.nlm.nih.gov/26446641" }, { "database": "PubMed", "id": "26674329", "url": "https://pubmed.ncbi.nlm.nih.gov/26674329" }, { "database": "PubMed", "id": "27602284", "url": "https://pubmed.ncbi.nlm.nih.gov/27602284" }, { "database": "PubMed", "id": "27769056", "url": "https://pubmed.ncbi.nlm.nih.gov/27769056" }, { "database": "PubMed", "id": "27856257", "url": "https://pubmed.ncbi.nlm.nih.gov/27856257" }, { "database": "PubMed", "id": "28036259", "url": "https://pubmed.ncbi.nlm.nih.gov/28036259" }, { "database": "PubMed", "id": "28398822", "url": "https://pubmed.ncbi.nlm.nih.gov/28398822" }, { "database": "PubMed", "id": "28415610", "url": "https://pubmed.ncbi.nlm.nih.gov/28415610" }, { "database": "PubMed", "id": "29017179", "url": "https://pubmed.ncbi.nlm.nih.gov/29017179" }, { "database": "PubMed", "id": "29044520", "url": "https://pubmed.ncbi.nlm.nih.gov/29044520" }, { "database": "PubMed", "id": "29217661", "url": "https://pubmed.ncbi.nlm.nih.gov/29217661" }, { "database": "PubMed", "id": "29893976", "url": "https://pubmed.ncbi.nlm.nih.gov/29893976" }, { "database": "PubMed", "id": "29915392", "url": "https://pubmed.ncbi.nlm.nih.gov/29915392" }, { "database": "PubMed", "id": "31629677", "url": "https://pubmed.ncbi.nlm.nih.gov/31629677" }, { "database": "PubMed", "id": "31727006", "url": "https://pubmed.ncbi.nlm.nih.gov/31727006" }, { "database": "PubMed", "id": "32424140", "url": "https://pubmed.ncbi.nlm.nih.gov/32424140" }, { "database": "PubMed", "id": "32788653", "url": "https://pubmed.ncbi.nlm.nih.gov/32788653" }, { "database": "PubMed", "id": "10102273", "url": "https://pubmed.ncbi.nlm.nih.gov/10102273" } ], "site_lbl": "Thr32", "uniprot_canonical_ac": "O43524-1" } ], "record_id": "pubmed.18937079", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "How ERK1/2 activation controls cell proliferation and cell death: Is subcellular localization the answer?", "journal": "Cell cycle (Georgetown, Tex.)", "date": "2009", "authors": "Mebratu Y, Tesfaigzi Y", "reference": { "type": "PubMed", "id": "19282669", "url": "https://pubmed.ncbi.nlm.nih.gov/19282669" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O43524-1", "protein_name": "Forkhead box protein O3", "gene_name": "FOXO3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92934-1", "protein_name": "Bcl2-associated agonist of cell death", "gene_name": "BAD", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "O43524", "url": "https://www.uniprot.org/uniprotkb/O43524" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 294, "end_pos": 294, "kinase_uniprot_canonical_ac": "P27361-1", "kinase_gene_name": "MAPK3", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O43524", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O43524" }, { "database": "PubMed", "id": "19282669", "url": "https://pubmed.ncbi.nlm.nih.gov/19282669" } ], "site_lbl": "Ser294", "uniprot_canonical_ac": "O43524-1" }, { "start_pos": 344, "end_pos": 344, "kinase_uniprot_canonical_ac": "P27361-1", "kinase_gene_name": "MAPK3", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O43524", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O43524" }, { "database": "PubMed", "id": "19282669", "url": "https://pubmed.ncbi.nlm.nih.gov/19282669" } ], "site_lbl": "Ser344", "uniprot_canonical_ac": "O43524-1" }, { "start_pos": 425, "end_pos": 425, "kinase_uniprot_canonical_ac": "P27361-1", "kinase_gene_name": "MAPK3", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O43524", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O43524" }, { "database": "PubMed", "id": "19282669", "url": "https://pubmed.ncbi.nlm.nih.gov/19282669" } ], "site_lbl": "Ser425", "uniprot_canonical_ac": "O43524-1" }, { "start_pos": 75, "end_pos": 75, "kinase_uniprot_canonical_ac": "P51812-1", "kinase_gene_name": "RPS6KA3", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q92934", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q92934" }, { "database": "PubMed", "id": "11983683", "url": "https://pubmed.ncbi.nlm.nih.gov/11983683" }, { "database": "PubMed", "id": "19282669", "url": "https://pubmed.ncbi.nlm.nih.gov/19282669" } ], "site_lbl": "Ser75", "uniprot_canonical_ac": "Q92934-1" }, { "start_pos": 75, "end_pos": 75, "kinase_uniprot_canonical_ac": "Q15349-1", "kinase_gene_name": "RPS6KA2", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q92934", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q92934" }, { "database": "PubMed", "id": "10521512", "url": "https://pubmed.ncbi.nlm.nih.gov/10521512" }, { "database": "PubMed", "id": "10837486", "url": "https://pubmed.ncbi.nlm.nih.gov/10837486" }, { "database": "PubMed", "id": "10880354", "url": "https://pubmed.ncbi.nlm.nih.gov/10880354" }, { "database": "PubMed", "id": "12897128", "url": "https://pubmed.ncbi.nlm.nih.gov/12897128" }, { "database": "PubMed", "id": "9381178", "url": "https://pubmed.ncbi.nlm.nih.gov/9381178" }, { "database": "PubMed", "id": "19282669", "url": "https://pubmed.ncbi.nlm.nih.gov/19282669" } ], "site_lbl": "Ser75", "uniprot_canonical_ac": "Q92934-1" } ], "record_id": "pubmed.19282669", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 5 }, { "field": "total_sites", "count": 4 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Deregulation of FOXO3A during prostate cancer progression.", "journal": "International journal of oncology", "date": "2009", "authors": "Shukla S, Shukla M, Maclennan GT, Fu P, Gupta S", "reference": { "type": "PubMed", "id": "19424579", "url": "https://pubmed.ncbi.nlm.nih.gov/19424579" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O43524-1", "protein_name": "Forkhead box protein O3", "gene_name": "FOXO3", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "O43524", "url": "https://www.uniprot.org/uniprotkb/O43524" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 253, "end_pos": 253, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PKB/AKT1 and MAPKAPK5", "evidence": [ { "database": "UniProtKB", "id": "O43524", "url": "https://www.uniprot.org/uniprotkb/O43524" }, { "database": "iPTMnet", "id": "O43524", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O43524" }, { "database": "PubMed", "id": "11864996", "url": "https://pubmed.ncbi.nlm.nih.gov/11864996" }, { "database": "PubMed", "id": "17044646", "url": "https://pubmed.ncbi.nlm.nih.gov/17044646" }, { "database": "PubMed", "id": "17190839", "url": "https://pubmed.ncbi.nlm.nih.gov/17190839" }, { "database": "PubMed", "id": "19424579", "url": "https://pubmed.ncbi.nlm.nih.gov/19424579" }, { "database": "PubMed", "id": "20110348", "url": "https://pubmed.ncbi.nlm.nih.gov/20110348" }, { "database": "PubMed", "id": "20139145", "url": "https://pubmed.ncbi.nlm.nih.gov/20139145" }, { "database": "PubMed", "id": "20525153", "url": "https://pubmed.ncbi.nlm.nih.gov/20525153" }, { "database": "PubMed", "id": "20661471", "url": "https://pubmed.ncbi.nlm.nih.gov/20661471" }, { "database": "PubMed", "id": "21291561", "url": "https://pubmed.ncbi.nlm.nih.gov/21291561" }, { "database": "PubMed", "id": "21777391", "url": "https://pubmed.ncbi.nlm.nih.gov/21777391" }, { "database": "PubMed", "id": "22820736", "url": "https://pubmed.ncbi.nlm.nih.gov/22820736" }, { "database": "PubMed", "id": "23257900", "url": "https://pubmed.ncbi.nlm.nih.gov/23257900" }, { "database": "PubMed", "id": "23392169", "url": "https://pubmed.ncbi.nlm.nih.gov/23392169" }, { "database": "PubMed", "id": "23805378", "url": "https://pubmed.ncbi.nlm.nih.gov/23805378" }, { "database": "PubMed", "id": "23819460", "url": "https://pubmed.ncbi.nlm.nih.gov/23819460" }, { "database": "PubMed", "id": "24339862", "url": "https://pubmed.ncbi.nlm.nih.gov/24339862" }, { "database": "PubMed", "id": "24586650", "url": "https://pubmed.ncbi.nlm.nih.gov/24586650" }, { "database": "PubMed", "id": "24858012", "url": "https://pubmed.ncbi.nlm.nih.gov/24858012" }, { "database": "PubMed", "id": "25191523", "url": "https://pubmed.ncbi.nlm.nih.gov/25191523" }, { "database": "PubMed", "id": "25521510", "url": "https://pubmed.ncbi.nlm.nih.gov/25521510" }, { "database": "PubMed", "id": "26446641", "url": "https://pubmed.ncbi.nlm.nih.gov/26446641" }, { "database": "PubMed", "id": "26643256", "url": "https://pubmed.ncbi.nlm.nih.gov/26643256" }, { "database": "PubMed", "id": "27411103", "url": "https://pubmed.ncbi.nlm.nih.gov/27411103" }, { "database": "PubMed", "id": "27769056", "url": "https://pubmed.ncbi.nlm.nih.gov/27769056" }, { "database": "PubMed", "id": "27856257", "url": "https://pubmed.ncbi.nlm.nih.gov/27856257" }, { "database": "PubMed", "id": "28036259", "url": "https://pubmed.ncbi.nlm.nih.gov/28036259" }, { "database": "PubMed", "id": "28164237", "url": "https://pubmed.ncbi.nlm.nih.gov/28164237" }, { "database": "PubMed", "id": "28969041", "url": "https://pubmed.ncbi.nlm.nih.gov/28969041" }, { "database": "PubMed", "id": "29017179", "url": "https://pubmed.ncbi.nlm.nih.gov/29017179" }, { "database": "PubMed", "id": "29099866", "url": "https://pubmed.ncbi.nlm.nih.gov/29099866" }, { "database": "PubMed", "id": "29217661", "url": "https://pubmed.ncbi.nlm.nih.gov/29217661" }, { "database": "PubMed", "id": "29893976", "url": "https://pubmed.ncbi.nlm.nih.gov/29893976" }, { "database": "PubMed", "id": "30671548", "url": "https://pubmed.ncbi.nlm.nih.gov/30671548" }, { "database": "PubMed", "id": "30674870", "url": "https://pubmed.ncbi.nlm.nih.gov/30674870" }, { "database": "PubMed", "id": "31100089", "url": "https://pubmed.ncbi.nlm.nih.gov/31100089" }, { "database": "PubMed", "id": "31197106", "url": "https://pubmed.ncbi.nlm.nih.gov/31197106" }, { "database": "PubMed", "id": "31506431", "url": "https://pubmed.ncbi.nlm.nih.gov/31506431" }, { "database": "PubMed", "id": "31629677", "url": "https://pubmed.ncbi.nlm.nih.gov/31629677" }, { "database": "PubMed", "id": "31902744", "url": "https://pubmed.ncbi.nlm.nih.gov/31902744" }, { "database": "PubMed", "id": "32347651", "url": "https://pubmed.ncbi.nlm.nih.gov/32347651" }, { "database": "PubMed", "id": "32406610", "url": "https://pubmed.ncbi.nlm.nih.gov/32406610" }, { "database": "PubMed", "id": "32424140", "url": "https://pubmed.ncbi.nlm.nih.gov/32424140" }, { "database": "PubMed", "id": "32788653", "url": "https://pubmed.ncbi.nlm.nih.gov/32788653" }, { "database": "PubMed", "id": "33408225", "url": "https://pubmed.ncbi.nlm.nih.gov/33408225" }, { "database": "PubMed", "id": "34475505", "url": "https://pubmed.ncbi.nlm.nih.gov/34475505" }, { "database": "PubMed", "id": "35874228", "url": "https://pubmed.ncbi.nlm.nih.gov/35874228" }, { "database": "PubMed", "id": "21329882", "url": "https://pubmed.ncbi.nlm.nih.gov/21329882" }, { "database": "PubMed", "id": "30513302", "url": "https://pubmed.ncbi.nlm.nih.gov/30513302" }, { "database": "PubMed", "id": "10102273", "url": "https://pubmed.ncbi.nlm.nih.gov/10102273" } ], "site_lbl": "Ser253", "uniprot_canonical_ac": "O43524-1" } ], "record_id": "pubmed.19424579", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] } ]