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}, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Mitochondrial AtPAM16 is required for plant survival and the negative regulation of plant immunity.", "journal": "Nat. Commun.", "date": "2013", "authors": "Huang Yan, Chen Xuejin, Liu Yanan, Roth Charlotte, Copeland Charles, McFarlane Heather E, Huang Shuai, Lipka Volker, Wiermer Marcel, Li Xin", "reference": { "type": "PubMed", "id": "24153405", "url": "https://pubmed.ncbi.nlm.nih.gov/24153405" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q93W66-1", "protein_name": "Mitochondrial import inner membrane translocase subunit PAM16 like 1", "gene_name": "PAM16L1; PAM16L", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q93VV9-1", "protein_name": "Mitochondrial import inner membrane translocase subunit PAM16 like 2", "gene_name": "PAM16L2; TXR1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q93W66", "url": "https://www.uniprot.org/uniprotkb/Q93W66" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.24153405", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Comparative analysis of putative orthologues of mitochondrial import motor subunit: Pam18 and Pam16 in plants.", "journal": "PLoS ONE", "date": "2013", "authors": "Chen Xuejin, Ghazanfar Bushra, Khan Abdul Rehman, Hayat Sikandar, Cheng Zhihui", "reference": { "type": "PubMed", "id": "24194927", "url": "https://pubmed.ncbi.nlm.nih.gov/24194927" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q93W66-1", "protein_name": "Mitochondrial import inner membrane translocase subunit PAM16 like 1", "gene_name": "PAM16L1; PAM16L", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q93VV9-1", "protein_name": "Mitochondrial import inner membrane translocase subunit PAM16 like 2", "gene_name": "PAM16L2; TXR1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q93W66", "url": "https://www.uniprot.org/uniprotkb/Q93W66" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.24194927", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": 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"n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A novel major facilitator superfamily protein at the tonoplast influences zinc tolerance and accumulation in Arabidopsis.", "journal": "Plant physiology", "date": "2007-04", "authors": "Haydon Michael J, Cobbett Christopher S", "reference": { "type": "PubMed", "id": "17277087", "url": "https://pubmed.ncbi.nlm.nih.gov/17277087" }, 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"url": "https://www.uniprot.org/uniprotkb/Q8RWN2" }, { "database": "PubMed", "id": "17277087", "url": "https://pubmed.ncbi.nlm.nih.gov/17277087" } ], "uniprot_canonical_ac": "Q8RWN2-1" } ], "record_id": "pubmed.17277087", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Evaluation of folate-binding proteins and stability of folates in plant foliages.", "journal": "Food Chem.", "date": "2018", "authors": "Puthusseri Bijesh, Divya Peethambaran, Veeresh Lokesh, Kumar Gyanendra, Neelwarne Bhagyalakshmi", "reference": { "type": "PubMed", "id": "29037729", "url": "https://pubmed.ncbi.nlm.nih.gov/29037729" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q94BQ5-1", "protein_name": "Folate-binding protein 1", "gene_name": "FBP1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q94BQ5", "url": "https://www.uniprot.org/uniprotkb/Q94BQ5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.29037729", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", 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Commun.", "date": "2015", "authors": "Linster Eric, Stephan Iwona, Bienvenut Willy V, Maple-Gr\u00f8dem Jodi, Myklebust Line M, Huber Monika, Reichelt Michael, Sticht Carsten, M\u00f8ller Simon Geir, Meinnel Thierry, Arnesen Thomas, Giglione Carmela, Hell R\u00fcdiger, Wirtz Markus", "reference": { "type": "PubMed", "id": "26184543", "url": "https://pubmed.ncbi.nlm.nih.gov/26184543" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8VZM1-1", "protein_name": "N-terminal acetyltransferase A complex auxiliary subunit NAA15", "gene_name": "NAA15", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FKI4-1", "protein_name": "N-terminal acetyltransferase A complex catalytic subunit NAA10", "gene_name": "NAA10", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8VZM1", "url": "https://www.uniprot.org/uniprotkb/Q8VZM1" } ], "common_name": "Mouse-ear cress", 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}, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Alternative targeting of Arabidopsis plastidic glucose-6-phosphate dehydrogenase G6PD1 involves cysteine-dependent interaction with G6PD4 in the cytosol.", "journal": "The Plant journal : for cell and molecular biology", "date": "2011-06", "authors": "Meyer Tanja, H\u00f6lscher Christian, Schw\u00f6ppe Christian, von 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"database": "PubMed", "id": "21309870", "url": "https://pubmed.ncbi.nlm.nih.gov/21309870" } ], "uniprot_canonical_ac": "Q43727-1" }, { "start_pos": 565, "end_pos": 565, "sequence_org": "K", "sequence_mut": "E", "comment": "Abolishes targeting to peroxisome.", "evidence": [ { "database": "UniProtKB", "id": "Q43727", "url": "https://www.uniprot.org/uniprotkb/Q43727" }, { "database": "PubMed", "id": "21309870", "url": "https://pubmed.ncbi.nlm.nih.gov/21309870" } ], "uniprot_canonical_ac": "Q43727-1" } ], "record_id": "pubmed.21309870", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", 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"database": "PubMed", "id": "12226665", "url": "https://pubmed.ncbi.nlm.nih.gov/12226665" } ], "uniprot_canonical_ac": "Q8S3N1-1" } ], "record_id": "pubmed.12226665", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": 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[] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Roles of Trm9- and ALKBH8-like proteins in the formation of modified wobble uridines in Arabidopsis tRNA.", "journal": "Nucleic acids research", "date": "2011-09-01", "authors": "Leihne Vibeke, Kirpekar Finn, V\u00e5gb\u00f8 Cathrine B, van den Born Erwin, Krokan Hans E, Grini Paul E, Meza Trine J, Falnes P\u00e5l \u00d8", "reference": { "type": "PubMed", "id": "21653555", "url": "https://pubmed.ncbi.nlm.nih.gov/21653555" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8RWY1-1", "protein_name": "Alkylated DNA repair protein ALKBH8 homolog", "gene_name": "ALKBH8; TRM9", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8LFJ5-1", "protein_name": "Multifunctional methyltransferase subunit TRM112 homolog A", "gene_name": "TRM112A", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q94A09-1", "protein_name": "tRNA (carboxymethyluridine(34)-5-O)-methyltransferase", "gene_name": "TRM9", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9C9R3-1", "protein_name": "Multifunctional methyltransferase subunit TRM112 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Prefoldins negatively regulate cold acclimation in Arabidopsis thaliana by promoting nuclear proteasome-mediated HY5 degradation.", "journal": "Mol. Plant", "date": "2017", "authors": "Perea-Resa Carlos, Rodr\u00edguez-Milla Miguel A, Iniesto Elisa, Rubio Vicente, Salinas Julio", "reference": { "type": "PubMed", "id": "28412546", "url": "https://pubmed.ncbi.nlm.nih.gov/28412546" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q94AF7-1", "protein_name": "Prefoldin subunit 1", "gene_name": "PFD1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9M4B5-1", "protein_name": "Prefoldin subunit 4", "gene_name": "PFD4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O24646-1", "protein_name": "Transcription factor HY5", "gene_name": "HY5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SLH3-1", "protein_name": "DELLA protein RGA", "gene_name": "RGA", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LJ98-1", "protein_name": "Prefoldin subunit 2", "gene_name": "PFD2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P57741-1", "protein_name": 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"glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Prefoldins contribute to maintaining the levels of the spliceosome LSM2-8 complex through Hsp90 in Arabidopsis.", "journal": "Nucleic Acids Res.", "date": "2020", "authors": "Esteve-Bruna David, Carrasco-L\u00f3pez Cristian, Blanco-Touri\u00f1\u00e1n Noel, Iserte Javier, Calleja-Cabrera Juli\u00e1n, Perea-Resa Carlos, \u00darbez Cristina, Carrasco Pedro, Yanovsky Marcelo J, Bl\u00e1zquez Miguel A, Salinas Julio, Alabad\u00ed David", "reference": { "type": "PubMed", "id": "32396196", "url": "https://pubmed.ncbi.nlm.nih.gov/32396196" }, 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"Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q94AF7", "url": "https://www.uniprot.org/uniprotkb/Q94AF7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "mutagenesis": [ { "start_pos": 83, "end_pos": 83, "sequence_org": "R", "sequence_mut": "Q", "comment": "In pfd6-1; smaller plants and reduced levels of LSM8 via a post-transcriptional process (at protein level). Reduced production of U6 snRNA.", "evidence": [ { "database": "UniProtKB", "id": "Q2HIK4", "url": "https://www.uniprot.org/uniprotkb/Q2HIK4" }, { "database": "PubMed", "id": "32396196", "url": "https://pubmed.ncbi.nlm.nih.gov/32396196" } ], "uniprot_canonical_ac": "Q2HIK4-1" } ], "record_id": "pubmed.32396196", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": 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"count": 0 } ], "sort_fields": [] } ] }, { "title": "X-ray crystal structures of the conserved hypothetical proteins from Arabidopsis thaliana gene loci At5g11950 and At2g37210.", "journal": "Proteins", "date": "2006", "authors": "Jeon Won Bae, Allard Simon T M, Bingman Craig A, Bitto Eduard, Han Byung Woo, Wesenberg Gary E, Phillips George N", "reference": { "type": "PubMed", "id": "17048257", "url": "https://pubmed.ncbi.nlm.nih.gov/17048257" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8L8B8-1", "protein_name": "Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG3", "gene_name": "LOG3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q84MC2-1", "protein_name": "Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG8", "gene_name": "LOG8", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8L8B8", "url": 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"count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": 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transporters and hormone pathways during developmental and induced leaf senescence.", "journal": "Plant Physiol.", "date": "2006", "authors": "van der Graaff Eric, Schwacke Rainer, Schneider Anja, Desimone Marcelo, Fl\u00fcgge Ulf-Ingo, Kunze Reinhard", "reference": { "type": "PubMed", "id": "16603661", "url": "https://pubmed.ncbi.nlm.nih.gov/16603661" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9CAZ7-1", "protein_name": "Protein STRICTOSIDINE SYNTHASE-LIKE 5", "gene_name": "SSL5; YLS2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q94AK6-1", "protein_name": "Senescence associated gene 20", "gene_name": "SAG20", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9CAZ7", "url": "https://www.uniprot.org/uniprotkb/Q9CAZ7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } 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"2003-05", "authors": "Despres Barbara, Bouissonni\u00e9 Fabrice, Wu Hui-Ju, Gomord V\u00e9ronique, Guilleminot Jocelyne, Grellet Fran\u00e7oise, Berger Fr\u00e9d\u00e9ric, Delseny Michel, Devic Martine", "reference": { "type": "PubMed", "id": "12713536", "url": "https://pubmed.ncbi.nlm.nih.gov/12713536" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q96328-1", "protein_name": "Phosphoinositide phosphatase SAC8", "gene_name": "SAC8", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9C5G5-1", "protein_name": "Phosphoinositide phosphatase SAC7", "gene_name": "SAC7", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q7X911-1", "protein_name": "Phosphoinositide phosphatase SAC6", "gene_name": "SAC6", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q96328", "url": "https://www.uniprot.org/uniprotkb/Q96328" } ], "common_name": "Mouse-ear 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"o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Comparative and evolutionary analysis of genes encoding small GTPases and their activating proteins in eukaryotic genomes.", "journal": "Physiol. Genomics", "date": "2006", "authors": "Jiang Shu-Ye, Ramachandran Srinivasan", "reference": { "type": "PubMed", "id": "16332933", "url": "https://pubmed.ncbi.nlm.nih.gov/16332933" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q94BY9-1", "protein_name": "Rab GTPase-activating protein 22", "gene_name": "RABGAP22", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q94BY9", "url": "https://www.uniprot.org/uniprotkb/Q94BY9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.16332933", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", 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"count": 0 } ], "sort_fields": [] } ] }, { "title": "Mining the soluble chloroplast proteome by affinity chromatography.", "journal": "Proteomics", "date": "2011", "authors": "Bayer Roman G, Stael Simon, Csaszar Edina, Teige Markus", "reference": { "type": "PubMed", "id": "21365755", "url": "https://pubmed.ncbi.nlm.nih.gov/21365755" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8L5Z4-1", "protein_name": "Endoribonuclease YBEY, chloroplastic", "gene_name": "YBEY", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FNJ9-1", "protein_name": "Probable 2-carboxy-D-arabinitol-1-phosphatase", "gene_name": "MDJ22.4", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8L5Z4", "url": "https://www.uniprot.org/uniprotkb/Q8L5Z4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], 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Yang Chuanping, Sun Yi, Wu Wenjuan, Cao Shenquan, Wang Chong, Hai Guanghui, Wang Zhifeng, Bock Ralph, Huang Jirong, Cheng Yuxiang", "reference": { "type": "PubMed", "id": "25810095", "url": "https://pubmed.ncbi.nlm.nih.gov/25810095" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8L5Z4-1", "protein_name": "Endoribonuclease YBEY, chloroplastic", "gene_name": "YBEY", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8L5Z4", "url": "https://www.uniprot.org/uniprotkb/Q8L5Z4" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.25810095", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ 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"o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The AT-hook motif-encoding gene METABOLIC NETWORK MODULATOR 1 underlies natural variation in Arabidopsis primary metabolism.", "journal": "Frontiers in plant science", "date": "2014", "authors": "Li Baohua, Kliebenstein Daniel J", "reference": { "type": "PubMed", "id": "25202318", "url": "https://pubmed.ncbi.nlm.nih.gov/25202318" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8L7T9-1", "protein_name": "Protein METABOLIC NETWORK MODULATOR 1", "gene_name": "MNM1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8L7T9", "url": "https://www.uniprot.org/uniprotkb/Q8L7T9" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.25202318", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": 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Gen. Genet.", "date": "1996", "authors": "Mart\u00ednez-Garc\u00eda M, Garcidue\u00f1as-Pi\u00f1a C, Guzm\u00e1n P", "reference": { "type": "PubMed", "id": "8914520", "url": "https://pubmed.ncbi.nlm.nih.gov/8914520" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8L9T5-1", "protein_name": "RING-H2 finger protein ATL2", "gene_name": "ATL2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8L9T5", "url": "https://www.uniprot.org/uniprotkb/Q8L9T5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.8914520", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", 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Biol.", "date": "2019", "authors": "Van Dingenen Judith, Vermeersch Mattias, De Milde Liesbeth, Hulsmans Sander, De Winne Nancy, Van Leene Jelle, Gonzalez Nathalie, Dhondt Stijn, De Jaeger Geert, Rolland Filip, Inz\u00e9 Dirk", "reference": { "type": "PubMed", "id": "30511331", "url": "https://pubmed.ncbi.nlm.nih.gov/30511331" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8LBB2-1", "protein_name": "SNF1-related protein kinase regulatory subunit gamma-1", "gene_name": "KING1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q42525-1", "protein_name": "Hexokinase-1", "gene_name": "HXK1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8LBB2", "url": "https://www.uniprot.org/uniprotkb/Q8LBB2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": 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"journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2014-10-14", "authors": "Puga Mar\u00eda Isabel, Mateos Isabel, Charukesi Rajulu, Wang Zhiye, Franco-Zorrilla Jos\u00e9 M, de Lorenzo Laura, Irigoyen Mar\u00eda L, Masiero Simona, Bustos Regla, Rodr\u00edguez Jos\u00e9, Leyva Antonio, Rubio Vicente, Sommer Hans, Paz-Ares Javier", "reference": { "type": "PubMed", "id": "25271326", "url": "https://pubmed.ncbi.nlm.nih.gov/25271326" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8LBH4-1", "protein_name": "SPX domain-containing protein 1", "gene_name": "SPX1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O48781-1", "protein_name": "SPX domain-containing protein 2", "gene_name": "SPX2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q94CL7-1", "protein_name": "Protein PHOSPHATE STARVATION RESPONSE 1", "gene_name": "PHR1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": 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"authors": "McIntosh K B, Bonham-Smith P C", "reference": { "type": "PubMed", "id": "11575722", "url": "https://pubmed.ncbi.nlm.nih.gov/11575722" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8LD46-1", "protein_name": "Large ribosomal subunit protein uL23z", "gene_name": "RPL23AA", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8LD46", "url": "https://www.uniprot.org/uniprotkb/Q8LD46" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.11575722", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": 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"count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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"Octanoyltransferase LIP2p, chloroplastic", "gene_name": "LIP2P", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8LEE8", "url": "https://www.uniprot.org/uniprotkb/Q8LEE8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.23581459", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 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0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "NAD(+)-dependent isocitrate dehydrogenase from Arabidopsis thaliana. Characterization of two closely related subunits.", "journal": "Plant Mol. Biol.", "date": "1998", "authors": "Behal R H, Oliver D J", "reference": { "type": "PubMed", "id": "9526501", "url": "https://pubmed.ncbi.nlm.nih.gov/9526501" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8LFC0-1", "protein_name": "Isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial", "gene_name": "IDH1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P93032-1", "protein_name": "Isocitrate dehydrogenase [NAD] regulatory subunit 2, mitochondrial", "gene_name": "IDH2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8LFC0", "url": "https://www.uniprot.org/uniprotkb/Q8LFC0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.9526501", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": 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Cell", "date": "2005", "authors": "Qi Yijun, Denli Ahmet M, Hannon Gregory J", "reference": { "type": "PubMed", "id": "16061187", "url": "https://pubmed.ncbi.nlm.nih.gov/16061187" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8LFW5-1", "protein_name": "Protein HEAT-INDUCED TAS1 TARGET 1", "gene_name": "HTT1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8LFW5", "url": "https://www.uniprot.org/uniprotkb/Q8LFW5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.16061187", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Hibiscus chlorotic ringspot virus coat protein inhibits trans-acting small interfering RNA biogenesis in Arabidopsis.", "journal": "J. Gen. Virol.", "date": "2008", "authors": "Meng Chunying, Chen Jun, Ding Shou-Wei, Peng Jinrong, Wong Sek-Man", "reference": { "type": "PubMed", "id": "18753245", "url": "https://pubmed.ncbi.nlm.nih.gov/18753245" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8LFW5-1", "protein_name": "Protein HEAT-INDUCED TAS1 TARGET 1", "gene_name": "HTT1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FJF8-1", "protein_name": "Protein HEAT-INDUCED TAS1 TARGET 2", "gene_name": "HTT2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8LFW5", "url": "https://www.uniprot.org/uniprotkb/Q8LFW5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.18753245", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], 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"o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Mutation of an Arabidopsis NatB N-alpha-terminal acetylation complex component causes pleiotropic developmental defects.", "journal": "PLoS ONE", "date": "2013", "authors": "Ferr\u00e1ndez-Ayela Almudena, Micol-Ponce Rosa, S\u00e1nchez-Garc\u00eda Ana Bel\u00e9n, Alonso-Peral Mar\u00eda Magdalena, Micol Jos\u00e9 Luis, Ponce Mar\u00eda Rosa", "reference": { "type": "PubMed", "id": "24244708", "url": "https://pubmed.ncbi.nlm.nih.gov/24244708" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8LGI8-1", "protein_name": "N-terminal acetyltransferase B complex catalytic subunit NAA20", "gene_name": "NAA20", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4KEY9-1", "protein_name": "N-terminal acetyltransferase B complex auxiliary subunit NAA25", "gene_name": "NAA25; TCU2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8LGI8", "url": "https://www.uniprot.org/uniprotkb/Q8LGI8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.24244708", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": 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[] } ] }, { "title": "Multidrug resistance-like genes of Arabidopsis required for auxin transport and auxin-mediated development.", "journal": "Plant Cell", "date": "2001", "authors": "Noh B, Murphy A S, Spalding E P", "reference": { "type": "PubMed", "id": "11701880", "url": "https://pubmed.ncbi.nlm.nih.gov/11701880" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8LPK2-1", "protein_name": "ABC transporter B family member 2", "gene_name": "ABCB2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LJX0-1", "protein_name": "ABC transporter B family member 19", "gene_name": "ABCB19", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9ZR72-1", "protein_name": "ABC transporter B family member 1", "gene_name": "ABCB1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8LPK2", "url": "https://www.uniprot.org/uniprotkb/Q8LPK2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.11701880", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": 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[] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Two phloem nitrate transporters, NRT1.11 and NRT1.12, are important for redistributing xylem-borne nitrate to enhance plant growth.", "journal": "Plant physiology", "date": "2013-10", "authors": "Hsu Po-Kai, Tsay Yi-Fang", "reference": { "type": "PubMed", "id": "24006285", "url": "https://pubmed.ncbi.nlm.nih.gov/24006285" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8LPL2-1", "protein_name": "Protein NRT1/ PTR FAMILY 1.1", "gene_name": "NPF1.1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9M817-1", "protein_name": "Protein NRT1/ PTR FAMILY 1.2", "gene_name": "NPF1.2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8LPL2", "url": "https://www.uniprot.org/uniprotkb/Q8LPL2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.24006285", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], 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}, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "EpsinR2 interacts with clathrin, adaptor protein-3, AtVTI12, and phosphatidylinositol-3-phosphate. Implications for EpsinR2 function in protein trafficking in plant cells.", "journal": "Plant Physiol.", "date": "2007", "authors": "Lee Gil-Je, Kim Hyeran, Kang Hyangju, Jang Mihue, Lee Dong Wook, Lee Sookjin, Hwang Inhwan", "reference": { "type": "PubMed", "id": "17277094", "url": "https://pubmed.ncbi.nlm.nih.gov/17277094" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8LPL6-1", "protein_name": "AP-2 complex subunit alpha-1", "gene_name": "ALPHA-ADR", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9C744-1", "protein_name": "AP-3 complex subunit delta", "gene_name": "DELTA-ADR", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q67YI9-1", "protein_name": "Clathrin interactor EPSIN 2", "gene_name": "EPSIN2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SEL5-1", "protein_name": "Vesicle transport v-SNARE 12", "gene_name": "VTI12", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8LPL6", "url": "https://www.uniprot.org/uniprotkb/Q8LPL6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "mutagenesis": [ { "start_pos": 409, "end_pos": 413, "sequence_org": "LADVF", "sequence_mut": "AAAAA", "comment": "Impaired clathrin binding.", "evidence": [ { "database": "UniProtKB", "id": "Q67YI9", "url": "https://www.uniprot.org/uniprotkb/Q67YI9" }, { "database": "PubMed", "id": "17277094", "url": "https://pubmed.ncbi.nlm.nih.gov/17277094" } ], "uniprot_canonical_ac": "Q67YI9-1" }, { "start_pos": 454, "end_pos": 456, "sequence_org": "DPF", "sequence_mut": "AAA", "comment": "Impaired ALPHA-ADR binding.", "evidence": [ { "database": "UniProtKB", "id": "Q67YI9", "url": "https://www.uniprot.org/uniprotkb/Q67YI9" }, { "database": "PubMed", "id": "17277094", "url": "https://pubmed.ncbi.nlm.nih.gov/17277094" } ], "uniprot_canonical_ac": "Q67YI9-1" } ], "record_id": "pubmed.17277094", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The rub family of ubiquitin-like proteins. Crystal structure of Arabidopsis rub1 and expression of multiple rubs in Arabidopsis.", "journal": "J. Biol. Chem.", "date": "1998", "authors": "Rao-Naik C, delaCruz W, Laplaza J M, Tan S, Callis J, Fisher A J", "reference": { "type": "PubMed", "id": "9857029", "url": "https://pubmed.ncbi.nlm.nih.gov/9857029" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8RUC6-1", "protein_name": "Ubiquitin-NEDD8-like protein RUB2", "gene_name": "RUB2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O65381-1", "protein_name": "NEDD8-like protein RUB3", "gene_name": "RUB3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SHE7-1", "protein_name": "Ubiquitin-NEDD8-like protein RUB1", "gene_name": "RUB1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8RUC6", "url": "https://www.uniprot.org/uniprotkb/Q8RUC6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.9857029", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The E2F family of transcription factors from Arabidopsis thaliana. Novel and conserved components of the retinoblastoma/E2F pathway in plants.", "journal": "The Journal of biological chemistry", "date": "2002-03-22", "authors": "Mariconti Luisa, Pellegrini Barbara, Cantoni Rita, Stevens Rebecca, Bergounioux Catherine, Cella Rino, Albani Diego", "reference": { "type": "PubMed", "id": "11786543", "url": "https://pubmed.ncbi.nlm.nih.gov/11786543" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8RWL0-1", "protein_name": "E2F transcription factor-like E2FF", "gene_name": "E2FF", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8LSZ4-1", "protein_name": "E2F transcription factor-like E2FE", "gene_name": "E2FE", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FV71-1", "protein_name": "Transcription factor E2FB", "gene_name": "E2FB", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LFQ9-1", "protein_name": "E2F transcription factor-like E2FD", "gene_name": "DEL2; E2FD", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FV70-1", "protein_name": "Transcription factor E2FC", "gene_name": "ATE2F2; E2FC", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FNY0-1", "protein_name": "Transcription factor E2FA", "gene_name": "E2F3; E2FA", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FNY2-1", "protein_name": "Transcription factor-like protein DPB", "gene_name": "DPB", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FNY3-1", "protein_name": "Transcription factor-like protein DPA", "gene_name": "DPA", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8RWL0", "url": "https://www.uniprot.org/uniprotkb/Q8RWL0" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.11786543", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], 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3702, "evidence": [ { "database": "UniProtKB", "id": "Q8RWZ3", "url": "https://www.uniprot.org/uniprotkb/Q8RWZ3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "mutagenesis": [ { "start_pos": 229, "end_pos": 229, "sequence_org": "H", "sequence_mut": "Y", "comment": "In ibr3-11; resistance to the inhibitory effect of intermediate levels of indole-3-butyric acid (IBA) on root elongation.", "evidence": [ { "database": "UniProtKB", "id": "Q8RWZ3", "url": "https://www.uniprot.org/uniprotkb/Q8RWZ3" }, { "database": "PubMed", "id": "17277896", "url": "https://pubmed.ncbi.nlm.nih.gov/17277896" } ], "uniprot_canonical_ac": "Q8RWZ3-1" } ], "record_id": "pubmed.17277896", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", 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], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Identification and characterization of Arabidopsis indole-3-butyric acid response mutants defective in novel peroxisomal enzymes.", "journal": "Genetics", "date": "2008", "authors": "Zolman Bethany K, Martinez Naxhiely, Millius Arthur, Adham A Raquel, Bartel Bonnie", "reference": { "type": "PubMed", "id": "18725356", "url": "https://pubmed.ncbi.nlm.nih.gov/18725356" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8RWZ3-1", "protein_name": "Probable acyl-CoA dehydrogenase 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in Arabidopsis mediates H+-ATPase translocation that is essential for stomatal responses.", "journal": "Nature communications", "date": "2013", "authors": "Hashimoto-Sugimoto Mimi, Higaki Takumi, Yaeno Takashi, Nagami Ayako, Irie Mari, Fujimi Miho, Miyamoto Megumi, Akita Kae, Negi Juntaro, Shirasu Ken, Hasezawa Seiichiro, Iba Koh", "reference": { "type": "PubMed", "id": "23896897", "url": "https://pubmed.ncbi.nlm.nih.gov/23896897" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8RX56-1", "protein_name": "Protein unc-13 homolog", "gene_name": "PATROL1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8RX56", "url": "https://www.uniprot.org/uniprotkb/Q8RX56" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.23896897", "abstract": "", "glycosylation": [], 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"https://pubmed.ncbi.nlm.nih.gov/16824178" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8RXL7-1", "protein_name": "ARGOS-like protein", "gene_name": "ARL", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8RXL7", "url": "https://www.uniprot.org/uniprotkb/Q8RXL7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.16824178", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", 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