[ { "title": "Association of the MARCO polymorphism rs6761637 with hepatocellular carcinoma susceptibility and clinical characteristics.", "journal": "Immunologic research", "date": "2022", "authors": "Su Z, Luo L, Wu X, Wei B, Wang L, Liu F, Cai B", "reference": { "type": "PubMed", "id": "35364781", "url": "https://pubmed.ncbi.nlm.nih.gov/35364781" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9UEW3-1", "protein_name": "Macrophage receptor MARCO", "gene_name": "MARCO", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9UEW3", "url": "https://www.uniprot.org/uniprotkb/Q9UEW3" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.35364781", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", 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Rep.", "date": "2014", "authors": "Bastos-Aristizabal S, Kozlov G, Gehring K", "reference": { "type": "PubMed", "id": "24662985", "url": "https://pubmed.ncbi.nlm.nih.gov/24662985" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8N807-1", "protein_name": "Protein disulfide-isomerase-like protein of the testis", "gene_name": "PDILT", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q8N807", "url": "https://www.uniprot.org/uniprotkb/Q8N807" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.24662985", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { 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No ubiquitination and complete loss of down-regulation of MHCII; when associated with 'R-254' of HLA-DRB.", "evidence": [ { "database": "UniProtKB", "id": "P01903", "url": "https://www.uniprot.org/uniprotkb/P01903" }, { "database": "PubMed", "id": "19117940", "url": "https://pubmed.ncbi.nlm.nih.gov/19117940" } ], "uniprot_canonical_ac": "P01903-1" } ], "record_id": "pubmed.19117940", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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"field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Ubiquitin-conjugating enzyme E2 D1 (Ube2D1) mediates lysine-independent ubiquitination of the E3 ubiquitin ligase March-I.", "journal": "The Journal of biological chemistry", "date": "2018", "authors": "Lei L, Bandola-Simon J, Roche PA", "reference": { "type": "PubMed", "id": "29414787", "url": "https://pubmed.ncbi.nlm.nih.gov/29414787" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8TCQ1-1", "protein_name": "E3 ubiquitin-protein ligase MARCHF1", "gene_name": "MARCHF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q8TCQ1", "url": "https://www.uniprot.org/uniprotkb/Q8TCQ1" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.29414787", "abstract": "", "glycosylation": [], 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"count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "MARCH1 silencing suppresses growth of oral squamous cell carcinoma through regulation of PHLPP2.", "journal": "Clinical & translational oncology : official publication of the Federation of Spanish Oncology Societies and of the National Cancer Institute of Mexico", "date": "2022", "authors": "Liu L, Guo B, Han Y, Xu S, Liu S", "reference": { "type": "PubMed", "id": "35122633", "url": "https://pubmed.ncbi.nlm.nih.gov/35122633" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8TCQ1-1", "protein_name": "E3 ubiquitin-protein ligase MARCHF1", "gene_name": "MARCHF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", 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"count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": 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Schessler B, Casey C, White M, Parker M, Kunkel D, Blennow K, Zetterberg H, Pearce RA, Lennertz R", "reference": { "type": "PubMed", "id": "33158499", "url": "https://pubmed.ncbi.nlm.nih.gov/33158499" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P19237-1", "protein_name": "Troponin I, slow skeletal muscle", "gene_name": "TNNI1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P19237", "url": "https://www.uniprot.org/uniprotkb/P19237" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.33158499", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { 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"Phase I/II study of immunotherapy with T-cell peptide epitopes in patients with stage IV melanoma.", "journal": "Cancer immunology, immunotherapy : CII", "date": "2005-03", "authors": "Hersey Peter, Menzies Scott W, Coventry Brendon, Nguyen Tam, Farrelly Margaret, Collins Susan, Hirst Debbie, Johnson Heather", "reference": { "type": "PubMed", "id": "15449035", "url": "https://pubmed.ncbi.nlm.nih.gov/15449035" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P43357-1", "protein_name": "Melanoma-associated antigen 3", "gene_name": "MAGEA3", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P43357", "url": "https://www.uniprot.org/uniprotkb/P43357" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.15449035", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": 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immunology (Baltimore, Md. : 1950)", "date": "2016-02-15", "authors": "Ma Wenbin, Zhang Yi, Vigneron Nathalie, Stroobant Vincent, Thielemans Kris, van der Bruggen Pierre, Van den Eynde Beno\u00eet J", "reference": { "type": "PubMed", "id": "26792804", "url": "https://pubmed.ncbi.nlm.nih.gov/26792804" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P43357-1", "protein_name": "Melanoma-associated antigen 3", "gene_name": "MAGEA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40967-1", "protein_name": "Melanocyte protein PMEL", "gene_name": "PMEL", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P43357", "url": "https://www.uniprot.org/uniprotkb/P43357" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.26792804", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], 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ubiquitin ligase and nutrient availability.", "journal": "EMBO reports", "date": "2019", "authors": "Ravichandran R, Kodali K, Peng J, Potts PR", "reference": { "type": "PubMed", "id": "31267705", "url": "https://pubmed.ncbi.nlm.nih.gov/31267705" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P43357-1", "protein_name": "Melanoma-associated antigen 3", "gene_name": "MAGEA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P43360-1", "protein_name": "Melanoma-associated antigen 6", "gene_name": "MAGEA6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5T6F0-1", "protein_name": "DDB1- and CUL4-associated factor 12", "gene_name": "DCAF12", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P43357", "url": "https://www.uniprot.org/uniprotkb/P43357" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { 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"o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Landscape mapping of shared antigenic epitopes and their cognate TCRs of tumor-infiltrating T lymphocytes in melanoma.", "journal": "eLife", "date": "2020-04-21", "authors": "Murata Kenji, Nakatsugawa Munehide, Rahman Muhammed A, Nguyen Linh T, Millar Douglas G, Mulder David T, Sugata Kenji, Saijo Hiroshi, Matsunaga Yukiko, Kagoya Yuki, Guo Tingxi, Anczurowski Mark, Wang Chung-Hsi, Burt Brian D, Ly Dalam, Saso Kayoko, Easson Alexandra, Goldstein David P, Reedijk Michael, Ghazarian Danny, Pugh Trevor J, Butler Marcus O, Mak Tak W, Ohashi Pamela S, Hirano Naoto", "reference": { "type": "PubMed", "id": "32314731", "url": "https://pubmed.ncbi.nlm.nih.gov/32314731" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P43357-1", "protein_name": "Melanoma-associated antigen 3", "gene_name": "MAGEA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2M3G0-4", "protein_name": "ATP-binding 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predict poor prognosis in patients with prostate cancer.", "journal": "APMIS : acta pathologica, microbiologica, et immunologica Scandinavica", "date": "2021", "authors": "Khalvandi A, Abolhasani M, Madjd Z, Shekarabi M, Kourosh-Arami M, Mohsenzadegan M", "reference": { "type": "PubMed", "id": "33743542", "url": "https://pubmed.ncbi.nlm.nih.gov/33743542" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P43357-1", "protein_name": "Melanoma-associated antigen 3", "gene_name": "MAGEA3", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P43357", "url": "https://www.uniprot.org/uniprotkb/P43357" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.33743542", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": 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Biol.", "date": "2002", "authors": "Calero G, Wilson KF, Ly T, Rios-Steiner JL, Clardy JC, Cerione RA", "reference": { "type": "PubMed", "id": "12434151", "url": "https://pubmed.ncbi.nlm.nih.gov/12434151" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P52298", "url": "https://www.uniprot.org/uniprotkb/P52298" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.12434151", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", 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detectably target eIF4E-bound mRNA.", "journal": "Nature structural & molecular biology", "date": "2007-10", "authors": "Matsuda Daiki, Hosoda Nao, Kim Yoon Ki, Maquat Lynne E", "reference": { "type": "PubMed", "id": "17873884", "url": "https://pubmed.ncbi.nlm.nih.gov/17873884" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P52298-1", "protein_name": "Nuclear cap-binding protein subunit 2", "gene_name": "NCBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09161-1", "protein_name": "Nuclear cap-binding protein subunit 1", "gene_name": "NCBP1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P52298", "url": "https://www.uniprot.org/uniprotkb/P52298" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.17873884", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], 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J. 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