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J.", "date": "2001", "authors": "Gaitanou M, Buanne P, Pappa C, Georgopoulou N, Mamalaki A, Tirone F, Matsas R", "reference": { "type": "PubMed", "id": "11311134", "url": "https://pubmed.ncbi.nlm.nih.gov/11311134" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9JKC6-1", "protein_name": "Cell cycle exit and neuronal differentiation protein 1", "gene_name": "Cend1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8N111-1", "protein_name": "Cell cycle exit and neuronal differentiation protein 1", "gene_name": "CEND1", "tax_name": "Human" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q9JKC6", "url": "https://www.uniprot.org/uniprotkb/Q9JKC6" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.11311134", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], 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"journal": "Stem cells (Dayton, Ohio)", "date": "2008", "authors": "Katsimpardi L, Gaitanou M, Malnou CE, Lledo PM, Charneau P, Matsas R, Thomaidou D", "reference": { "type": "PubMed", "id": "18499894", "url": "https://pubmed.ncbi.nlm.nih.gov/18499894" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9JKC6-1", "protein_name": "Cell cycle exit and neuronal differentiation protein 1", "gene_name": "Cend1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8N111-1", "protein_name": "Cell cycle exit and neuronal differentiation protein 1", "gene_name": "CEND1", "tax_name": "Human" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q9JKC6", "url": "https://www.uniprot.org/uniprotkb/Q9JKC6" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.18499894", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], 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J. Biochem.", "date": "1998", "authors": "Byk T, Ozon S, Sobel A", "reference": { "type": "PubMed", "id": "9652388", "url": "https://pubmed.ncbi.nlm.nih.gov/9652388" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O08553-1", "protein_name": "Dihydropyrimidinase-related protein 2", "gene_name": "Dpysl2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "O35098-1", "protein_name": "Dihydropyrimidinase-related protein 4", "gene_name": "Dpysl4", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "O14531-1", "protein_name": "Dihydropyrimidinase-related protein 4", "gene_name": "DPYSL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P97427-1", "protein_name": "Dihydropyrimidinase-related protein 1", "gene_name": "Crmp1", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "O08553", "url": "https://www.uniprot.org/uniprotkb/O08553" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.9652388", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Nucleolar localization of murine nuclear DNA helicase II (RNA helicase A).", "journal": "J. Cell Sci.", "date": "1999", "authors": "Zhang S, Herrmann C, Grosse F", "reference": { "type": "PubMed", "id": "10413677", "url": "https://pubmed.ncbi.nlm.nih.gov/10413677" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O70133-1", "protein_name": "ATP-dependent RNA helicase A", "gene_name": "Dhx9", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "O70133", "url": "https://www.uniprot.org/uniprotkb/O70133" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.10413677", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "ZIC2-dependent transcriptional regulation is mediated by DNA-dependent protein kinase, poly(ADP-ribose) polymerase, and RNA helicase A.", "journal": "J. Biol. Chem.", "date": "2007", "authors": "Ishiguro Akira, Ideta Maki, Mikoshiba Katsuhiko, Chen David J, Aruga Jun", "reference": { "type": "PubMed", "id": "17251188", "url": "https://pubmed.ncbi.nlm.nih.gov/17251188" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O70133-1", "protein_name": "ATP-dependent RNA helicase A", "gene_name": "Dhx9", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q08211-1", "protein_name": "ATP-dependent RNA helicase A", "gene_name": "DHX9", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95409-1", "protein_name": "Zinc finger protein ZIC 2", "gene_name": "ZIC2", "tax_name": "Human" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "O70133", "url": "https://www.uniprot.org/uniprotkb/O70133" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.17251188", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The transcriptional factor Osterix directly interacts with RNA helicase A.", "journal": "Biochem. Biophys. Res. Commun.", "date": "2007", "authors": "Amorim Bruna Rabelo, Okamura Hirohiko, Yoshida Kaya, Qiu Lihong, Morimoto Hiroyuki, Haneji Tatsuji", "reference": { "type": "PubMed", "id": "17303075", "url": "https://pubmed.ncbi.nlm.nih.gov/17303075" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O70133-1", "protein_name": "ATP-dependent RNA helicase A", "gene_name": "Dhx9", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q08211-1", "protein_name": "ATP-dependent RNA helicase A", "gene_name": "DHX9", "tax_name": "Human" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "O70133", "url": "https://www.uniprot.org/uniprotkb/O70133" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.17303075", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": 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associated with neurodevelopmental disorders: Human genetic and experimental evidences.", "journal": "European journal of medical genetics", "date": "2023-08", "authors": "Yamada Mamiko, Nitta Yohei, Uehara Tomoko, Suzuki Hisato, Miya Fuyuki, Takenouchi Toshiki, Tamura Masaru, Ayabe Shinya, Yoshiki Atsushi, Maeno Akiteru, Saga Yumiko, Furuse Tamio, Yamada Ikuko, Okamoto Nobuhiko, Kosaki Kenjiro, Sugie Atsushi", "reference": { "type": "PubMed", "id": "37369308", "url": "https://pubmed.ncbi.nlm.nih.gov/37369308" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O70133-1", "protein_name": "ATP-dependent RNA helicase A", "gene_name": "Dhx9", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q08211-1", "protein_name": "ATP-dependent RNA helicase A", "gene_name": "DHX9", "tax_name": "Human" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "O70133", "url": "https://www.uniprot.org/uniprotkb/O70133" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "mutagenesis": [ { "start_pos": 416, "end_pos": 416, "sequence_org": "G", "sequence_mut": "R", "comment": "Mice show a reduced body size, reduced emotionality, and cardiac conduction abnormalities.", "evidence": [ { "database": "UniProtKB", "id": "O70133", "url": "https://www.uniprot.org/uniprotkb/O70133" }, { "database": "PubMed", "id": "37369308", "url": "https://pubmed.ncbi.nlm.nih.gov/37369308" } ], "uniprot_canonical_ac": "O70133-1" } ], "record_id": "pubmed.37369308", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", 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"glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Monoallelic variation in DHX9, the gene encoding the DExH-box helicase DHX9, underlies neurodevelopment disorders and Charcot-Marie-Tooth disease.", "journal": "Am. J. Hum. Genet.", "date": "2023", "authors": "Calame Daniel G, Guo Tianyu, Wang Chen, Garrett Lillian, Jolly Angad, Dawood Moez, Kurolap Alina, Henig Noa Zunz, Fatih Jawid M, Herman Isabella, Du Haowei, Mitani Tadahiro, Becker Lore, Rathkolb Birgit, Gerlini Raffaele, Seisenberger Claudia, Marschall Susan, Hunter Jill V, Gerard Amanda, Heidlebaugh Alexis, Challman Thomas, Spillmann Rebecca C, Jhangiani Shalini N, Coban-Akdemir Zeynep, Lalani Seema, Liu Lingxiao, Revah-Politi Anya, Iglesias Alejandro, Guzman Edwin, Baugh Evan, Boddaert Nathalie, Rondeau Sophie, Ormieres Clothide, Barcia Giulia, Tan Queenie K G, Thiffault Isabelle, Pastinen Tomi, Sheikh Kazim, Biliciler Suur, Mei Davide, Melani Federico, Shashi Vandana, Yaron Yuval, Steele Mary, Wakeling Emma, \u00d8stergaard Elsebet, Nazaryan-Petersen Lusine, , Millan Francisca, Santiago-Sim Teresa, Thevenon Julien, Bruel Ange-Line, Thauvin-Robinet Christel, Popp Denny, Platzer Konrad, Gawlinski Pawel, Wiszniewski Wojciech, Marafi Dana, Pehlivan Davut, Posey Jennifer E, Gibbs Richard A, Gailus-Durner Valerie, Guerrini Renzo, Fuchs Helmut, Hrab\u011b de Angelis Martin, H\u00f6lter Sabine M, Cheung Hoi-Hung, Gu Shen, Lupski James R", "reference": { "type": "PubMed", "id": "37467750", "url": "https://pubmed.ncbi.nlm.nih.gov/37467750" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O70133-1", "protein_name": "ATP-dependent RNA helicase A", "gene_name": "Dhx9", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q08211-1", "protein_name": "ATP-dependent RNA helicase A", "gene_name": "DHX9", "tax_name": "Human" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "O70133", "url": "https://www.uniprot.org/uniprotkb/O70133" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.37467750", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], 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Biol.", "date": "1994", "authors": "Sussman D J, Klingensmith J, Salinas P, Adams P S, Nusse R, Perrimon N", "reference": { "type": "PubMed", "id": "7958461", "url": "https://pubmed.ncbi.nlm.nih.gov/7958461" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P51141-1", "protein_name": "Segment polarity protein dishevelled homolog DVL-1", "gene_name": "Dvl1", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "P51141", "url": "https://www.uniprot.org/uniprotkb/P51141" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.7958461", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", 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"2021", "authors": "Liu R, King A, Tarlinton D, Heierhorst J", "reference": { "type": "PubMed", "id": "34543116", "url": "https://pubmed.ncbi.nlm.nih.gov/34543116" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P63168-1", "protein_name": "Dynein light chain 1, cytoplasmic", "gene_name": "Dynll1", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "P63168", "url": "https://www.uniprot.org/uniprotkb/P63168" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.34543116", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", 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Chem.", "date": "2005", "authors": "Nehring Leslie C, Miyamoto Alison, Hein Patrick W, Weinmaster Gerry, Shipley J Michael", "reference": { "type": "PubMed", "id": "15788413", "url": "https://pubmed.ncbi.nlm.nih.gov/15788413" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q61483-1", "protein_name": "Delta-like protein 1", "gene_name": "Dll1", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q61483", "url": "https://www.uniprot.org/uniprotkb/Q61483" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.15788413", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "MAGI1 recruits Dll1 to cadherin-based adherens junctions and stabilizes it on the cell surface.", "journal": "J. 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Chem.", "date": "2005", "authors": "Mizuhara E, Nakatani T, Minaki Y, Sakamoto Y, Ono Y, Takai Y", "reference": { "type": "PubMed", "id": "15908431", "url": "https://pubmed.ncbi.nlm.nih.gov/15908431" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q61483-1", "protein_name": "Delta-like protein 1", "gene_name": "Dll1", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q61483", "url": "https://www.uniprot.org/uniprotkb/Q61483" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.15908431", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": 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"Premature myogenic differentiation and depletion of progenitor cells cause severe muscle hypotrophy in Delta1 mutants.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2007-01-09", "authors": "Schuster-Gossler Karin, Cordes Ralf, Gossler Achim", "reference": { "type": "PubMed", "id": "17194759", "url": "https://pubmed.ncbi.nlm.nih.gov/17194759" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q61483-1", "protein_name": "Delta-like protein 1", "gene_name": "Dll1", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q61483", "url": "https://www.uniprot.org/uniprotkb/Q61483" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.17194759", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], 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"journal": "Development (Cambridge, England)", "date": "2008-12", "authors": "Kawaguchi Daichi, Yoshimatsu Takeshi, Hozumi Katsuto, Gotoh Yukiko", "reference": { "type": "PubMed", "id": "18997111", "url": "https://pubmed.ncbi.nlm.nih.gov/18997111" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q61483-1", "protein_name": "Delta-like protein 1", "gene_name": "Dll1", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q61483", "url": "https://www.uniprot.org/uniprotkb/Q61483" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.18997111", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", 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[] } ] }, { "title": "Lunatic and manic fringe cooperatively enhance marginal zone B cell precursor competition for delta-like 1 in splenic endothelial niches.", "journal": "Immunity", "date": "2009", "authors": "Tan JB, Xu K, Cretegny K, Visan I, Yuan JS, Egan SE, Guidos CJ", "reference": { "type": "PubMed", "id": "19217325", "url": "https://pubmed.ncbi.nlm.nih.gov/19217325" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q61483-1", "protein_name": "Delta-like protein 1", "gene_name": "Dll1", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q61483", "url": "https://www.uniprot.org/uniprotkb/Q61483" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.19217325", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Domain-specific control of neurogenesis achieved through patterned regulation of Notch ligand expression.", "journal": "Development (Cambridge, England)", "date": "2010", "authors": "Marklund U, Hansson EM, Sundstrom E, de Angelis MH, Przemeck GK, Lendahl U, Muhr J, Ericson J", "reference": { "type": "PubMed", "id": "20081190", "url": "https://pubmed.ncbi.nlm.nih.gov/20081190" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q61483-1", "protein_name": "Delta-like protein 1", "gene_name": "Dll1", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q61483", "url": "https://www.uniprot.org/uniprotkb/Q61483" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.20081190", "abstract": "", "glycosylation": [], 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Dll1 maintains quiescence of adult neural stem cells and segregates asymmetrically during mitosis.", "journal": "Nature communications", "date": "2013", "authors": "Kawaguchi Daichi, Furutachi Shohei, Kawai Hiroki, Hozumi Katsuto, Gotoh Yukiko", "reference": { "type": "PubMed", "id": "23695674", "url": "https://pubmed.ncbi.nlm.nih.gov/23695674" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q61483-1", "protein_name": "Delta-like protein 1", "gene_name": "Dll1", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q61483", "url": "https://www.uniprot.org/uniprotkb/Q61483" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.23695674", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": 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"protein_name": "Delta-like protein 1", "gene_name": "Dll1", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q61483", "url": "https://www.uniprot.org/uniprotkb/Q61483" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.23699523", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 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"count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The extracellular domain of Notch2 increases its cell-surface abundance and ligand responsiveness during kidney development.", "journal": "Developmental cell", "date": "2013-06-24", "authors": "Liu Zhenyi, Chen Shuang, Boyle Scott, Zhu Yu, Zhang Andrew, Piwnica-Worms David R, Ilagan Ma Xenia G, Kopan Raphael", "reference": { "type": "PubMed", "id": "23806616", "url": "https://pubmed.ncbi.nlm.nih.gov/23806616" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q61483-1", "protein_name": "Delta-like protein 1", "gene_name": "Dll1", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q61483", "url": "https://www.uniprot.org/uniprotkb/Q61483" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], 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"total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "S/T phosphorylation of DLL1 is required for full ligand activity in vitro but dispensable for DLL1 function in vivo during embryonic patterning and marginal zone B cell development.", "journal": "Molecular and cellular biology", "date": "2014", "authors": "Braune EB, Schuster-Gossler K, Lyszkiewicz M, Serth K, Preusse K, Madlung J, Macek B, Krueger A, Gossler A", "reference": { "type": "PubMed", "id": "24449764", "url": "https://pubmed.ncbi.nlm.nih.gov/24449764" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q61483-1", "protein_name": "Delta-like protein 1", "gene_name": "Dll1", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q61483", "url": "https://www.uniprot.org/uniprotkb/Q61483" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "mutagenesis": [ { "start_pos": 638, "end_pos": 638, "sequence_org": "T", "sequence_mut": "V", "comment": "Not phosphorylated; when associated with A-693 and A-696. Not phosphorylated and doesn't prevent phosphorylation at S-693 and S-696. Reduces NOTCH1 transactivation; when associated with A-693 and A-696. Reduces cell surface levels of proteins; when associated with A-693 and A-696. Increases ectodomain shedding; when associated with A-693 and A-696.", "evidence": [ { "database": "UniProtKB", "id": "Q61483", "url": "https://www.uniprot.org/uniprotkb/Q61483" }, { "database": "PubMed", "id": "24449764", "url": "https://pubmed.ncbi.nlm.nih.gov/24449764" } ], "uniprot_canonical_ac": "Q61483-1" }, { "start_pos": 693, "end_pos": 693, "sequence_org": "S", "sequence_mut": "A", "comment": "Not phosphorylated; when associated with V-638 and A-696. Not phosphorylated and prevents phosphorylation at S-696. Reduces NOTCH1 transactivation; when associated with V-638 and A-696. Reduces cell surface levels of proteins; when associated with V-638 and A-696. Increases ectodomain shedding; when associated with V-638 and A-696.", "evidence": [ { "database": "UniProtKB", "id": "Q61483", "url": "https://www.uniprot.org/uniprotkb/Q61483" }, { "database": "PubMed", "id": "24449764", "url": "https://pubmed.ncbi.nlm.nih.gov/24449764" } ], "uniprot_canonical_ac": "Q61483-1" }, { "start_pos": 696, "end_pos": 696, "sequence_org": "S", "sequence_mut": "A", "comment": "Not phosphorylated; when associated with V-638 and A-693. Not phosphorylated and doesn't prevent phosphorylation at T-638 and S-693, Reduces NOTCH1 transactivation; when associated with V-638 and A-693. Reduces cell surface levels of proteins; when associated with V-638 and A-693. Increases ectodomain shedding; when associated with V-638 and A-693.", "evidence": [ { "database": "UniProtKB", "id": "Q61483", "url": "https://www.uniprot.org/uniprotkb/Q61483" }, { "database": "PubMed", "id": "24449764", "url": "https://pubmed.ncbi.nlm.nih.gov/24449764" } ], "uniprot_canonical_ac": "Q61483-1" } ], "phosphorylation": [ { "start_pos": 638, "end_pos": 638, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "Phosphothreonine", "evidence": [ { "database": "UniProtKB", "id": "Q61483", "url": "https://www.uniprot.org/uniprotkb/Q61483" }, { "database": "PubMed", "id": "24449764", "url": "https://pubmed.ncbi.nlm.nih.gov/24449764" }, { "database": "iPTMnet", "id": "Q61483", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q61483" } ], "site_lbl": "Thr638", "uniprot_canonical_ac": "Q61483-1" }, { "start_pos": 693, "end_pos": 693, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by PKB", "evidence": [ { "database": "UniProtKB", "id": "Q61483", "url": "https://www.uniprot.org/uniprotkb/Q61483" }, { "database": "iPTMnet", "id": "Q61483", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q61483" }, { "database": "PubMed", "id": "24449764", "url": "https://pubmed.ncbi.nlm.nih.gov/24449764" } ], "site_lbl": "Ser693", "uniprot_canonical_ac": "Q61483-1" }, { "start_pos": 696, "end_pos": 696, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine", "evidence": [ { "database": "UniProtKB", "id": "Q61483", "url": "https://www.uniprot.org/uniprotkb/Q61483" }, { "database": "PubMed", "id": "24449764", "url": "https://pubmed.ncbi.nlm.nih.gov/24449764" }, { "database": "iPTMnet", "id": "Q61483", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q61483" } ], "site_lbl": "Ser696", "uniprot_canonical_ac": "Q61483-1" } ], "record_id": "pubmed.24449764", "abstract": "", "glycosylation": [], 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}, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Cadherin-based adhesions in the apical endfoot are required for active Notch signaling to control neurogenesis in vertebrates.", "journal": "Development", "date": "2014", "authors": "Hatakeyama J, Wakamatsu Y, Nagafuchi A, Kageyama R, Shigemoto R, Shimamura K", "reference": { "type": "PubMed", "id": "24715457", "url": "https://pubmed.ncbi.nlm.nih.gov/24715457" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q61483-1", "protein_name": "Delta-like protein 1", "gene_name": "Dll1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P39447-1", "protein_name": "Tight junction protein 1", "gene_name": "Tjp1", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q61483", "url": "https://www.uniprot.org/uniprotkb/Q61483" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.24715457", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": 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