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Chem.", "date": "2016", "authors": "Bavetsias V, Lanigan RM, Ruda GF, Atrash B, McLaughlin MG, Tumber A, Mok NY, Le Bihan YV, Dempster S, Boxall KJ, Jeganathan F, Hatch SB, Savitsky P, Velupillai S, Krojer T, England KS, Sejberg J, Thai C, Donovan A, Pal A, Scozzafava G, Bennett JM, Kawamura A, Johansson C, Szykowska A, Gileadi C, Burgess-Brown NA, von Delft F, Oppermann U, Walters Z, Shipley J, Raynaud FI, Westaway SM, Prinjha RK, Fedorov O, Burke R, Schofield CJ, Westwood IM, Bountra C, Muller S, van Montfort RL, Brennan PE, Blagg J", "reference": { "type": "PubMed", "id": "26741168", "url": "https://pubmed.ncbi.nlm.nih.gov/26741168" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q6B0I6-1", "protein_name": "Lysine-specific demethylase 4D", "gene_name": "KDM4D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UGL1-1", "protein_name": "Lysine-specific demethylase 5B", "gene_name": "KDM5B", "tax_name": "Human" }, { "uniprot_canonical_ac": 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"n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Assignment of O-glycan attachment sites to the hinge-like regions of human lysosomal membrane glycoproteins lamp-1 and lamp-2.", "journal": "Archives of biochemistry and biophysics", "date": "1993", "authors": "Carlsson SR, Lycksell PO, Fukuda M", "reference": { "type": "PubMed", "id": "8323299", "url": "https://pubmed.ncbi.nlm.nih.gov/8323299" }, "referenced_glycans": [ { "glytoucan_ac": "G00031MO" }, { "glytoucan_ac": "G64973KT" }, { "glytoucan_ac": "G36855EL" }, { "glytoucan_ac": "G67969CT" }, { "glytoucan_ac": "G63628AV" }, { "glytoucan_ac": "G57321FI" }, { "glytoucan_ac": "G29931IJ" } ], "referenced_proteins": [ { "uniprot_canonical_ac": "P11279-1", "protein_name": "Lysosome-associated membrane glycoprotein 1", "gene_name": "LAMP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13473-1", "protein_name": "Lysosome-associated membrane glycoprotein 2", "gene_name": "LAMP2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P11279", "url": "https://www.uniprot.org/uniprotkb/P11279" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 107, "start_aa": "Asn", "end_pos": 107, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn107", "evidence": [ { "id": "P11279", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P11279#ptm_processing" }, { "id": "8323299", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/8323299" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P11279-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 165, "start_aa": "Asn", "end_pos": 165, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn165", "evidence": [ { "id": "P11279", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P11279#ptm_processing" }, { "id": "8323299", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/8323299" }, { "id": "2243102", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/2243102" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "P11279-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 181, "start_aa": "Asn", "end_pos": 181, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn181", "evidence": [ { "id": "29741879", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/29741879" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "P11279", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P11279#ptm_processing" }, { "id": "8323299", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/8323299" }, { "id": "2243102", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/2243102" }, { "id": "23090970", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23090970" }, { "id": "GLY_000143", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000143" }, { "id": "24190977", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/24190977" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P11279-1" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "automatic_literature_mining", "site_category_dict": { "automatic_literature_mining": true }, "site_seq": "S", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 183, "start_aa": "Ser", "end_pos": 183, "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser183", "evidence": [ { "id": "8323299", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/8323299" }, { "id": "GLY_000481", "database": "GlyGen", "url": "https://data.glygen.org/GLY_000481" } ], "mining_tool": "RLIMS-G_1.0", "mining_tool_list": [ { "label": "RLIMS-G_1.0" } ], "filter_code": "000000000000000100000.00000000001000.00.01001", "uniprot_canonical_ac": "P11279-1" }, { "glytoucan_ac": "G00031MO", "type": "O-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "GlycoSuiteDB curation notes. Reported structure can be attached to the following: S-196, T-198, T-199, S-206, S-208, S-210", "icn3d_view": {}, "start_pos": 197, "start_aa": "Ser", "end_pos": 197, "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser197", "evidence": [ { "id": "8323299", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/8323299" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" } ], "filter_code": "000000000000000100000.0000000.00000000001000.1000000.1100000000.010100100011111100.10000.01000", "uniprot_canonical_ac": "P11279-1" }, { "glytoucan_ac": "G57321FI", "type": "O-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "GlycoSuiteDB curation notes. Reported structure can be attached to the following: S-196, T-198, T-199, S-206, S-208, S-210", "icn3d_view": {}, "start_pos": 197, "start_aa": "Ser", "end_pos": 197, "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser197", "evidence": [ { "id": "8323299", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/8323299" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "25813380", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/25813380" }, { "id": "10.1074/mcp.M114.046862", "database": "DOI", "url": "https://doi.org/10.1074/mcp.M114.046862" }, { "id": "23584533", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23584533" }, { "id": "10.1038/emboj.2013.79", "database": "DOI", "url": "https://doi.org/10.1038/emboj.2013.79" } ], "filter_code": "000000000000000100000.0000000.00000000001000.1000000.0100000000.010100100011111110.10000.01000", "uniprot_canonical_ac": "P11279-1" }, { "glytoucan_ac": "G64973KT", "type": "O-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "GlycoSuiteDB curation notes. Reported structure can be attached to the following: S-196, T-198, T-199, S-206, S-208, S-210", "icn3d_view": {}, "start_pos": 197, "start_aa": "Ser", "end_pos": 197, "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser197", "evidence": [ { "id": "8323299", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/8323299" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" } ], "filter_code": "000000000000000100000.0000000.00000000001000.1000000.1100000000.010100000001111001.10000.01000", "uniprot_canonical_ac": "P11279-1" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "O-GalNAcylation", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "S", "relation": "attached", "comment": "O-linked (GalNAc...) serine;O-GalNAcylation", "icn3d_view": {}, "start_pos": 197, "start_aa": "Ser", "end_pos": 197, "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser197", "evidence": [ { "id": "P11279", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P11279#ptm_processing" }, { "id": "8323299", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/8323299" } ], "filter_code": "000000000000000100000.00000010000000.00.01000", "uniprot_canonical_ac": "P11279-1" }, { "glytoucan_ac": "G00031MO", "type": "O-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "T", "relation": "attached", "comment": "GlycoSuiteDB curation notes. Reported structure can be attached to the following: S-196, T-198, T-199, S-206, S-208, S-210", "icn3d_view": {}, "start_pos": 199, "start_aa": "Thr", "end_pos": 199, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr199", "evidence": [ { "id": "8323299", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/8323299" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" } ], "filter_code": "000000000000000010000.0000000.00000000001000.1000000.1100000000.010100100011111100.10000.01001", "uniprot_canonical_ac": "P11279-1" }, { "glytoucan_ac": "G57321FI", "type": "O-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "T", "relation": "attached", "comment": "GlycoSuiteDB curation notes. Reported structure can be attached to the following: S-196, T-198, T-199, S-206, S-208, S-210", "icn3d_view": {}, "start_pos": 199, "start_aa": "Thr", "end_pos": 199, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr199", "evidence": [ { "id": "8323299", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/8323299" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "25813380", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/25813380" }, { "id": "10.1074/mcp.M114.046862", "database": "DOI", "url": "https://doi.org/10.1074/mcp.M114.046862" }, { "id": "23584533", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23584533" }, { "id": "10.1038/emboj.2013.79", "database": "DOI", "url": "https://doi.org/10.1038/emboj.2013.79" } ], "filter_code": "000000000000000010000.0000000.00000000001000.1000000.0100000000.010100100011111110.10000.01001", "uniprot_canonical_ac": "P11279-1" }, { "glytoucan_ac": "G64973KT", "type": "O-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "T", "relation": "attached", "comment": "GlycoSuiteDB curation notes. Reported structure can be attached to the following: S-196, T-198, T-199, S-206, S-208, S-210", "icn3d_view": {}, "start_pos": 199, "start_aa": "Thr", "end_pos": 199, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr199", "evidence": [ { "id": "8323299", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/8323299" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" } ], "filter_code": "000000000000000010000.0000000.00000000001000.1000000.1100000000.010100000001111001.10000.01001", "uniprot_canonical_ac": "P11279-1" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "O-GalNAcylation", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "T", "relation": "attached", "comment": "O-linked (GalNAc...) threonine;O-GalNAcylation", "icn3d_view": {}, "start_pos": 199, "start_aa": "Thr", "end_pos": 199, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr199", "evidence": [ { "id": "P11279", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P11279#ptm_processing" }, { "id": "8323299", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/8323299" }, { "id": "GLY_001151", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001151" } ], "filter_code": "000000000000000010000.00000010000000.00.01001", "uniprot_canonical_ac": "P11279-1" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "O-GalNAcylation", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "T", "relation": "attached", "comment": "O-linked (GalNAc...) threonine;O-GalNAcylation", "icn3d_view": {}, "start_pos": 200, "start_aa": "Thr", "end_pos": 200, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr200", "evidence": [ { "id": "P11279", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P11279#ptm_processing" }, { "id": "8323299", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/8323299" } ], "filter_code": "000000000000000010000.00000010000000.00.01000", "uniprot_canonical_ac": "P11279-1" }, { "glytoucan_ac": "G00031MO", "type": "O-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "GlycoSuiteDB curation notes. Reported structure can be attached to the following: S-196, T-198, T-199, S-206, S-208, S-210", "icn3d_view": {}, "start_pos": 207, "start_aa": "Ser", "end_pos": 207, "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser207", "evidence": [ { "id": "8323299", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/8323299" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" } ], "filter_code": "000000000000000100000.0000000.00000000001000.1000000.1100000000.010100100011111100.10000.01001", "uniprot_canonical_ac": "P11279-1" }, { "glytoucan_ac": "G57321FI", "type": "O-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "GlycoSuiteDB curation notes. 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(polylactosaminoglycan) asparagine", "icn3d_view": {}, "start_pos": 228, "start_aa": "Asn", "end_pos": 228, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn228", "evidence": [ { "id": "P11279", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P11279#ptm_processing" }, { "id": "8323299", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/8323299" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P11279-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 241, "start_aa": "Asn", "end_pos": 241, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn241", "evidence": [ { "id": "29741879", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/29741879" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": 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Reported structure can be attached to the following: S-195, T-196, T-200, T-203, T-204, S-207, T-209, T-210, T-211", "icn3d_view": {}, "start_pos": 195, "start_aa": "Ser", "end_pos": 195, "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser195", "evidence": [ { "id": "8323299", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/8323299" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" } ], "filter_code": "000000000000000100000.0000000.00000000001000.1000000.1100000000.010100100011111100.10000.01001", "uniprot_canonical_ac": "P13473-1" }, { "glytoucan_ac": "G57321FI", "type": "O-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "GlycoSuiteDB curation notes. Reported structure can be attached to the following: S-195, T-196, T-200, T-203, T-204, S-207, T-209, T-210, T-211", "icn3d_view": {}, "start_pos": 195, "start_aa": "Ser", "end_pos": 195, "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser195", "evidence": [ { "id": "8323299", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/8323299" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "25813380", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/25813380" }, { "id": "10.1074/mcp.M114.046862", "database": "DOI", "url": "https://doi.org/10.1074/mcp.M114.046862" }, { "id": "23584533", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23584533" }, { "id": "10.1038/emboj.2013.79", "database": "DOI", "url": "https://doi.org/10.1038/emboj.2013.79" } ], "filter_code": "000000000000000100000.0000000.00000000001000.1000000.0100000000.010100100011111110.10000.01001", "uniprot_canonical_ac": "P13473-1" }, { "glytoucan_ac": "G64973KT", "type": "O-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "GlycoSuiteDB curation notes. Reported structure can be attached to the following: S-195, T-196, T-200, T-203, T-204, S-207, T-209, T-210, T-211", "icn3d_view": {}, "start_pos": 195, "start_aa": "Ser", "end_pos": 195, "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser195", "evidence": [ { "id": "8323299", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/8323299" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" } ], "filter_code": "000000000000000100000.0000000.00000000001000.1000000.1100000000.010100000001111001.10000.01001", "uniprot_canonical_ac": "P13473-1" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "O-GalNAcylation", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "S", "relation": "attached", "comment": "O-linked (GalNAc...) serine;O-GalNAcylation", "icn3d_view": {}, "start_pos": 195, "start_aa": "Ser", "end_pos": 195, "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser195", "evidence": [ { "id": "P13473", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P13473#ptm_processing" }, { "id": "8323299", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/8323299" } ], "filter_code": "000000000000000100000.00000010000000.00.01001", "uniprot_canonical_ac": "P13473-1" }, { "glytoucan_ac": "G00031MO", "type": "O-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "T", "relation": "attached", "comment": "GlycoSuiteDB curation notes. Reported structure can be attached to the following: S-195, T-196, T-200, T-203, T-204, S-207, T-209, T-210, T-211", "icn3d_view": {}, "start_pos": 196, "start_aa": "Thr", "end_pos": 196, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr196", "evidence": [ { "id": "8323299", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/8323299" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" } ], "filter_code": "000000000000000010000.0000000.00000000001000.1000000.1100000000.010100100011111100.10000.01001", "uniprot_canonical_ac": "P13473-1" }, { "glytoucan_ac": "G57321FI", "type": "O-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "T", "relation": "attached", "comment": "GlycoSuiteDB curation notes. Reported structure can be attached to the following: S-195, T-196, T-200, T-203, T-204, S-207, T-209, T-210, T-211", "icn3d_view": {}, "start_pos": 196, "start_aa": "Thr", "end_pos": 196, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr196", "evidence": [ { "id": "8323299", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/8323299" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "25813380", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/25813380" }, { "id": "10.1074/mcp.M114.046862", "database": "DOI", "url": "https://doi.org/10.1074/mcp.M114.046862" }, { "id": "23584533", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23584533" }, { "id": "10.1038/emboj.2013.79", "database": "DOI", "url": "https://doi.org/10.1038/emboj.2013.79" } ], "filter_code": "000000000000000010000.0000000.00000000001000.1000000.0100000000.010100100011111110.10000.01001", "uniprot_canonical_ac": "P13473-1" }, { "glytoucan_ac": "G64973KT", "type": "O-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "T", "relation": "attached", "comment": "GlycoSuiteDB curation notes. Reported structure can be attached to the following: S-195, T-196, T-200, T-203, T-204, S-207, T-209, T-210, T-211", "icn3d_view": {}, "start_pos": 196, "start_aa": "Thr", "end_pos": 196, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr196", "evidence": [ { "id": "8323299", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/8323299" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" } ], "filter_code": "000000000000000010000.0000000.00000000001000.1000000.1100000000.010100000001111001.10000.01001", "uniprot_canonical_ac": "P13473-1" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "O-GalNAcylation", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "T", "relation": "attached", "comment": "O-linked (GalNAc...) threonine;O-GalNAcylation", "icn3d_view": {}, "start_pos": 196, "start_aa": "Thr", "end_pos": 196, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr196", "evidence": [ { "id": "P13473", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P13473#ptm_processing" }, { "id": "8323299", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/8323299" } ], "filter_code": "000000000000000010000.00000010000000.00.01001", "uniprot_canonical_ac": "P13473-1" }, { "glytoucan_ac": "G00031MO", "type": "O-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "T", "relation": "attached", "comment": "GlycoSuiteDB curation notes. Reported structure can be attached to the following: S-195, T-196, T-200, T-203, T-204, S-207, T-209, T-210, T-211", "icn3d_view": {}, "start_pos": 200, "start_aa": "Thr", "end_pos": 200, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr200", "evidence": [ { "id": "8323299", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/8323299" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" } ], "filter_code": "000000000000000010000.0000000.00000000001000.1000000.1100000000.010100100011111100.10000.01000", "uniprot_canonical_ac": "P13473-1" }, { "glytoucan_ac": "G57321FI", "type": "O-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "T", "relation": "attached", "comment": "GlycoSuiteDB curation notes. Reported structure can be attached to the following: S-195, T-196, T-200, T-203, T-204, S-207, T-209, T-210, T-211", "icn3d_view": {}, "start_pos": 200, "start_aa": "Thr", "end_pos": 200, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr200", "evidence": [ { "id": "8323299", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/8323299" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "25813380", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/25813380" }, { "id": "10.1074/mcp.M114.046862", "database": "DOI", "url": "https://doi.org/10.1074/mcp.M114.046862" }, { "id": "23584533", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23584533" }, { "id": "10.1038/emboj.2013.79", "database": "DOI", "url": "https://doi.org/10.1038/emboj.2013.79" } ], "filter_code": "000000000000000010000.0000000.00000000001000.1000000.0100000000.010100100011111110.10000.01000", "uniprot_canonical_ac": "P13473-1" }, { "glytoucan_ac": "G64973KT", "type": "O-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "T", "relation": "attached", "comment": "GlycoSuiteDB curation notes. Reported structure can be attached to the following: S-195, T-196, T-200, T-203, T-204, S-207, T-209, T-210, T-211", "icn3d_view": {}, "start_pos": 200, "start_aa": "Thr", "end_pos": 200, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr200", "evidence": [ { "id": "8323299", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/8323299" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" } ], "filter_code": "000000000000000010000.0000000.00000000001000.1000000.1100000000.010100000001111001.10000.01000", "uniprot_canonical_ac": "P13473-1" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "O-GalNAcylation", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "T", "relation": "attached", "comment": "O-linked (GalNAc...) threonine;O-GalNAcylation", "icn3d_view": {}, "start_pos": 200, "start_aa": "Thr", "end_pos": 200, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr200", "evidence": [ { "id": "P13473", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P13473#ptm_processing" }, { "id": "8323299", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/8323299" } ], "filter_code": "000000000000000010000.00000010000000.00.01000", "uniprot_canonical_ac": "P13473-1" }, { "glytoucan_ac": "G00031MO", "type": "O-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "T", "relation": "attached", "comment": "GlycoSuiteDB curation notes. Reported structure can be attached to the following: S-195, T-196, T-200, T-203, T-204, S-207, T-209, T-210, T-211", "icn3d_view": {}, "start_pos": 203, "start_aa": "Thr", "end_pos": 203, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr203", "evidence": [ { "id": "8323299", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/8323299" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" } ], "filter_code": "000000000000000010000.0000000.00000000001000.1000000.1100000000.010100100011111100.10000.01000", "uniprot_canonical_ac": "P13473-1" }, { "glytoucan_ac": "G57321FI", "type": "O-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "T", "relation": "attached", "comment": "GlycoSuiteDB curation notes. Reported structure can be attached to the following: S-195, T-196, T-200, T-203, T-204, S-207, T-209, T-210, T-211", "icn3d_view": {}, "start_pos": 203, "start_aa": "Thr", "end_pos": 203, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr203", "evidence": [ { "id": "8323299", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/8323299" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "25813380", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/25813380" }, { "id": "10.1074/mcp.M114.046862", "database": "DOI", "url": "https://doi.org/10.1074/mcp.M114.046862" }, { "id": "23584533", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23584533" }, { "id": "10.1038/emboj.2013.79", "database": "DOI", "url": "https://doi.org/10.1038/emboj.2013.79" } ], "filter_code": "000000000000000010000.0000000.00000000001000.1000000.0100000000.010100100011111110.10000.01000", "uniprot_canonical_ac": "P13473-1" }, { "glytoucan_ac": "G64973KT", "type": "O-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "T", "relation": "attached", "comment": "GlycoSuiteDB curation notes. Reported structure can be attached to the following: S-195, T-196, T-200, T-203, T-204, S-207, T-209, T-210, T-211", "icn3d_view": {}, "start_pos": 203, "start_aa": "Thr", "end_pos": 203, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr203", "evidence": [ { "id": "8323299", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/8323299" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" } ], "filter_code": "000000000000000010000.0000000.00000000001000.1000000.1100000000.010100000001111001.10000.01000", "uniprot_canonical_ac": "P13473-1" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "O-GalNAcylation", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "T", "relation": "attached", "comment": "O-linked (GalNAc...) threonine;O-GalNAcylation", "icn3d_view": {}, "start_pos": 203, "start_aa": "Thr", "end_pos": 203, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr203", "evidence": [ { "id": "P13473", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P13473#ptm_processing" }, { "id": "8323299", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/8323299" } ], "filter_code": "000000000000000010000.00000010000000.00.01000", "uniprot_canonical_ac": "P13473-1" }, { "glytoucan_ac": "G00031MO", "type": "O-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "T", "relation": "attached", "comment": "GlycoSuiteDB curation notes. Reported structure can be attached to the following: S-195, T-196, T-200, T-203, T-204, S-207, T-209, T-210, T-211", "icn3d_view": {}, "start_pos": 204, "start_aa": "Thr", "end_pos": 204, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr204", "evidence": [ { "id": "8323299", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/8323299" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" } ], "filter_code": "000000000000000010000.0000000.00000000001000.1000000.1100000000.010100100011111100.10000.01001", "uniprot_canonical_ac": "P13473-1" }, { "glytoucan_ac": "G57321FI", "type": "O-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "T", "relation": "attached", "comment": "GlycoSuiteDB curation notes. Reported structure can be attached to the following: S-195, T-196, T-200, T-203, T-204, S-207, T-209, T-210, T-211", "icn3d_view": {}, "start_pos": 204, "start_aa": "Thr", "end_pos": 204, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr204", "evidence": [ { "id": "8323299", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/8323299" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "25813380", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/25813380" }, { "id": "10.1074/mcp.M114.046862", "database": "DOI", "url": "https://doi.org/10.1074/mcp.M114.046862" }, { "id": "23584533", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23584533" }, { "id": "10.1038/emboj.2013.79", "database": "DOI", "url": "https://doi.org/10.1038/emboj.2013.79" } ], "filter_code": "000000000000000010000.0000000.00000000001000.1000000.0100000000.010100100011111110.10000.01001", "uniprot_canonical_ac": "P13473-1" }, { "glytoucan_ac": "G64973KT", "type": "O-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "T", "relation": "attached", "comment": "GlycoSuiteDB curation notes. Reported structure can be attached to the following: S-195, T-196, T-200, T-203, T-204, S-207, T-209, T-210, T-211", "icn3d_view": {}, "start_pos": 204, "start_aa": "Thr", "end_pos": 204, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr204", "evidence": [ { "id": "8323299", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/8323299" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" } ], "filter_code": "000000000000000010000.0000000.00000000001000.1000000.1100000000.010100000001111001.10000.01001", "uniprot_canonical_ac": "P13473-1" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "O-GalNAcylation", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "T", "relation": "attached", "comment": "O-linked (GalNAc...) threonine;O-GalNAcylation", "icn3d_view": {}, "start_pos": 204, "start_aa": "Thr", "end_pos": 204, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr204", "evidence": [ { "id": "P13473", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P13473#ptm_processing" }, { "id": "8323299", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/8323299" } ], "filter_code": "000000000000000010000.00000010000000.00.01001", "uniprot_canonical_ac": "P13473-1" }, { "glytoucan_ac": "G00031MO", "type": "O-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "GlycoSuiteDB curation notes. Reported structure can be attached to the following: S-195, T-196, T-200, T-203, T-204, S-207, T-209, T-210, T-211", "icn3d_view": {}, "start_pos": 207, "start_aa": "Ser", "end_pos": 207, "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser207", "evidence": [ { "id": "8323299", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/8323299" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" } ], "filter_code": "000000000000000100000.0000000.00000000001000.1000000.1100000000.010100100011111100.10000.01001", "uniprot_canonical_ac": "P13473-1" }, { "glytoucan_ac": "G57321FI", "type": "O-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "GlycoSuiteDB curation notes. Reported structure can be attached to the following: S-195, T-196, T-200, T-203, T-204, S-207, T-209, T-210, T-211", "icn3d_view": {}, "start_pos": 207, "start_aa": "Ser", "end_pos": 207, "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser207", "evidence": [ { "id": "8323299", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/8323299" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "25813380", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/25813380" }, { "id": "10.1074/mcp.M114.046862", "database": "DOI", "url": "https://doi.org/10.1074/mcp.M114.046862" } ], "filter_code": "000000000000000100000.0000000.00000000001000.1000000.0100000000.010100100011111110.10000.01001", "uniprot_canonical_ac": "P13473-1" }, { "glytoucan_ac": "G64973KT", "type": "O-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "S", "relation": "attached", "comment": "GlycoSuiteDB curation notes. Reported structure can be attached to the following: S-195, T-196, T-200, T-203, T-204, S-207, T-209, T-210, T-211", "icn3d_view": {}, "start_pos": 207, "start_aa": "Ser", "end_pos": 207, "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser207", "evidence": [ { "id": "8323299", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/8323299" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" } ], "filter_code": "000000000000000100000.0000000.00000000001000.1000000.1100000000.010100000001111001.10000.01001", "uniprot_canonical_ac": "P13473-1" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "O-GalNAcylation", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "S", "relation": "attached", "comment": "O-linked (GalNAc...) serine;O-GalNAcylation", "icn3d_view": {}, "start_pos": 207, "start_aa": "Ser", "end_pos": 207, "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser207", "evidence": [ { "id": "P13473", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P13473#ptm_processing" }, { "id": "8323299", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/8323299" } ], "filter_code": "000000000000000100000.00000010000000.00.01001", "uniprot_canonical_ac": "P13473-1" }, { "glytoucan_ac": "G00031MO", "type": "O-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "T", "relation": "attached", "comment": "GlycoSuiteDB curation notes. Reported structure can be attached to the following: S-195, T-196, T-200, T-203, T-204, S-207, T-209, T-210, T-211", "icn3d_view": {}, "start_pos": 209, "start_aa": "Thr", "end_pos": 209, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr209", "evidence": [ { "id": "8323299", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/8323299" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" } ], "filter_code": "000000000000000010000.0000000.00000000001000.1000000.1100000000.010100100011111100.10000.01000", "uniprot_canonical_ac": "P13473-1" }, { "glytoucan_ac": "G57321FI", "type": "O-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "T", "relation": "attached", "comment": "GlycoSuiteDB curation notes. Reported structure can be attached to the following: S-195, T-196, T-200, T-203, T-204, S-207, T-209, T-210, T-211", "icn3d_view": {}, "start_pos": 209, "start_aa": "Thr", "end_pos": 209, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr209", "evidence": [ { "id": "8323299", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/8323299" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "25813380", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/25813380" }, { "id": "10.1074/mcp.M114.046862", "database": "DOI", "url": "https://doi.org/10.1074/mcp.M114.046862" }, { "id": "23584533", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23584533" }, { "id": "10.1038/emboj.2013.79", "database": "DOI", "url": "https://doi.org/10.1038/emboj.2013.79" } ], "filter_code": "000000000000000010000.0000000.00000000001000.1000000.0100000000.010100100011111110.10000.01000", "uniprot_canonical_ac": "P13473-1" }, { "glytoucan_ac": "G64973KT", "type": "O-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "T", "relation": "attached", "comment": "GlycoSuiteDB curation notes. Reported structure can be attached to the following: S-195, T-196, T-200, T-203, T-204, S-207, T-209, T-210, T-211", "icn3d_view": {}, "start_pos": 209, "start_aa": "Thr", "end_pos": 209, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr209", "evidence": [ { "id": "8323299", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/8323299" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" } ], "filter_code": "000000000000000010000.0000000.00000000001000.1000000.1100000000.010100000001111001.10000.01000", "uniprot_canonical_ac": "P13473-1" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "O-GalNAcylation", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "T", "relation": "attached", "comment": "O-linked (GalNAc...) threonine;O-GalNAcylation", "icn3d_view": {}, "start_pos": 209, "start_aa": "Thr", "end_pos": 209, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr209", "evidence": [ { "id": "P13473", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P13473#ptm_processing" }, { "id": "8323299", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/8323299" } ], "filter_code": "000000000000000010000.00000010000000.00.01000", "uniprot_canonical_ac": "P13473-1" }, { "glytoucan_ac": "G00031MO", "type": "O-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "T", "relation": "attached", "comment": "GlycoSuiteDB curation notes. Reported structure can be attached to the following: S-195, T-196, T-200, T-203, T-204, S-207, T-209, T-210, T-211", "icn3d_view": {}, "start_pos": 210, "start_aa": "Thr", "end_pos": 210, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr210", "evidence": [ { "id": "8323299", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/8323299" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" } ], "filter_code": "000000000000000010000.0000000.00000000001000.1000000.1100000000.010100100011111100.10000.01001", "uniprot_canonical_ac": "P13473-1" }, { "glytoucan_ac": "G57321FI", "type": "O-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "T", "relation": "attached", "comment": "GlycoSuiteDB curation notes. Reported structure can be attached to the following: S-195, T-196, T-200, T-203, T-204, S-207, T-209, T-210, T-211", "icn3d_view": {}, "start_pos": 210, "start_aa": "Thr", "end_pos": 210, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr210", "evidence": [ { "id": "8323299", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/8323299" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "25813380", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/25813380" }, { "id": "10.1074/mcp.M114.046862", "database": "DOI", "url": "https://doi.org/10.1074/mcp.M114.046862" }, { "id": "23584533", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23584533" }, { "id": "10.1038/emboj.2013.79", "database": "DOI", "url": "https://doi.org/10.1038/emboj.2013.79" } ], "filter_code": "000000000000000010000.0000000.00000000001000.1000000.0100000000.010100100011111110.10000.01001", "uniprot_canonical_ac": "P13473-1" }, { "glytoucan_ac": "G64973KT", "type": "O-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "T", "relation": "attached", "comment": "GlycoSuiteDB curation notes. Reported structure can be attached to the following: S-195, T-196, T-200, T-203, T-204, S-207, T-209, T-210, T-211", "icn3d_view": {}, "start_pos": 210, "start_aa": "Thr", "end_pos": 210, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr210", "evidence": [ { "id": "8323299", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/8323299" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" } ], "filter_code": "000000000000000010000.0000000.00000000001000.1000000.1100000000.010100000001111001.10000.01001", "uniprot_canonical_ac": "P13473-1" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "O-GalNAcylation", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "T", "relation": "attached", "comment": "O-linked (GalNAc...) threonine;O-GalNAcylation", "icn3d_view": {}, "start_pos": 210, "start_aa": "Thr", "end_pos": 210, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr210", "evidence": [ { "id": "P13473", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P13473#ptm_processing" }, { "id": "8323299", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/8323299" } ], "filter_code": "000000000000000010000.00000010000000.00.01001", "uniprot_canonical_ac": "P13473-1" }, { "glytoucan_ac": "G00031MO", "type": "O-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "T", "relation": "attached", "comment": "GlycoSuiteDB curation notes. Reported structure can be attached to the following: S-195, T-196, T-200, T-203, T-204, S-207, T-209, T-210, T-211", "icn3d_view": {}, "start_pos": 211, "start_aa": "Thr", "end_pos": 211, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr211", "evidence": [ { "id": "8323299", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/8323299" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" } ], "filter_code": "000000000000000010000.0000000.00000000001000.1000000.1100000000.010100100011111100.10000.01001", "uniprot_canonical_ac": "P13473-1" }, { "glytoucan_ac": "G57321FI", "type": "O-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "T", "relation": "attached", "comment": "GlycoSuiteDB curation notes. Reported structure can be attached to the following: S-195, T-196, T-200, T-203, T-204, S-207, T-209, T-210, T-211", "icn3d_view": {}, "start_pos": 211, "start_aa": "Thr", "end_pos": 211, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr211", "evidence": [ { "id": "8323299", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/8323299" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "25813380", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/25813380" }, { "id": "10.1074/mcp.M114.046862", "database": "DOI", "url": "https://doi.org/10.1074/mcp.M114.046862" }, { "id": "23584533", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23584533" }, { "id": "10.1038/emboj.2013.79", "database": "DOI", "url": "https://doi.org/10.1038/emboj.2013.79" } ], "filter_code": "000000000000000010000.0000000.00000000001000.1000000.0100000000.010100100011111110.10000.01001", "uniprot_canonical_ac": "P13473-1" }, { "glytoucan_ac": "G64973KT", "type": "O-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "T", "relation": "attached", "comment": "GlycoSuiteDB curation notes. Reported structure can be attached to the following: S-195, T-196, T-200, T-203, T-204, S-207, T-209, T-210, T-211", "icn3d_view": {}, "start_pos": 211, "start_aa": "Thr", "end_pos": 211, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr211", "evidence": [ { "id": "8323299", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/8323299" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" } ], "filter_code": "000000000000000010000.0000000.00000000001000.1000000.1100000000.010100000001111001.10000.01001", "uniprot_canonical_ac": "P13473-1" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "O-GalNAcylation", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "T", "relation": "attached", "comment": "O-linked (GalNAc...) threonine;O-GalNAcylation", "icn3d_view": {}, "start_pos": 211, "start_aa": "Thr", "end_pos": 211, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr211", "evidence": [ { "id": "P13473", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P13473#ptm_processing" }, { "id": "8323299", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/8323299" } ], "filter_code": "000000000000000010000.00000010000000.00.01001", "uniprot_canonical_ac": "P13473-1" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "O-GalNAcylation", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "T", "relation": "attached", "comment": "O-linked (GalNAc...) threonine;O-GalNAcylation", "icn3d_view": {}, "start_pos": 213, "start_aa": "Thr", "end_pos": 213, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr213", "evidence": [ { "id": "P13473", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P13473#ptm_processing" }, { "id": "8323299", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/8323299" } ], "filter_code": "000000000000000010000.00000010000000.00.01001", "uniprot_canonical_ac": "P13473-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 229, "start_aa": "Asn", "end_pos": 229, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn229", "evidence": [ { "id": "P13473", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P13473#ptm_processing" }, { "id": "8323299", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/8323299" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P13473-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 242, "start_aa": "Asn", "end_pos": 242, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn242", "evidence": [ { "id": "29741879", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/29741879" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "P13473", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P13473#ptm_processing" }, { "id": "8323299", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/8323299" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "P13473-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 275, "start_aa": "Asn", "end_pos": 275, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn275", "evidence": [ { "id": "29741879", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/29741879" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "P13473", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P13473#ptm_processing" }, { "id": "8323299", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/8323299" } ], "filter_code": "001000000000000000000.00010000000000.00.01001", "uniprot_canonical_ac": "P13473-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 300, "start_aa": "Asn", "end_pos": 300, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn300", "evidence": [ { "id": "P13473", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P13473#ptm_processing" }, { "id": "8323299", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/8323299" } ], "filter_code": "001000000000000000000.00010000000000.00.01000", "uniprot_canonical_ac": "P13473-1" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) 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detected by bisulfite pyrosequencing, is associated with poor prognosis.", "journal": "Gastric cancer : official journal of the International Gastric Cancer Association and the Japanese Gastric Cancer Association", "date": "2013", "authors": "Shigaki H, Baba Y, Watanabe M, Murata A, Iwagami S, Miyake K, Ishimoto T, Iwatsuki M, Baba H", "reference": { "type": "PubMed", "id": "23179365", "url": "https://pubmed.ncbi.nlm.nih.gov/23179365" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q5T7N2-1", "protein_name": "LINE-1 type transposase domain-containing protein 1", "gene_name": "L1TD1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q5T7N2", "url": "https://www.uniprot.org/uniprotkb/Q5T7N2" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.23179365", "abstract": "", "glycosylation": [], "mutagenesis": [], 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A pilot study.", "journal": "IUBMB life", "date": "2021", "authors": "Vergani E, Bruno C, Gavotti C, Aversa LS, Martire M, Mancini A, Curro D", "reference": { "type": "PubMed", "id": "33991145", "url": "https://pubmed.ncbi.nlm.nih.gov/33991145" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q969E1-1", "protein_name": "Liver-expressed antimicrobial peptide 2", "gene_name": "LEAP2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q969E1", "url": "https://www.uniprot.org/uniprotkb/Q969E1" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.33991145", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", 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Acta Academiae Medicinae Sinicae", "date": "2021", "authors": "Li X, Wang WP, Zhou M, Xu XR, Gao JZ", "reference": { "type": "PubMed", "id": "34494532", "url": "https://pubmed.ncbi.nlm.nih.gov/34494532" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9HBX8-3", "protein_name": "Leucine-rich repeat-containing G protein-coupled receptor 6", "gene_name": "LGR6", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9HBX8", "url": "https://www.uniprot.org/uniprotkb/Q9HBX8" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.34494532", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", 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