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}, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Tim/Timeless, a member of the replication fork protection complex, operates with the Warsaw breakage syndrome DNA helicase DDX11 in the same fork recovery pathway.", "journal": "Nucleic acids research", "date": "2016", "authors": "Cali F, Bharti SK, Di Perna R, Brosh RM Jr, Pisani FM", "reference": { "type": "PubMed", 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"glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A Long Noncoding RNA Regulates Sister Chromatid Cohesion.", "journal": "Molecular cell", "date": "2016-08-04", "authors": "Marchese Francesco P, Grossi Elena, Mar\u00edn-B\u00e9jar Oskar, Bharti Sanjay Kumar, Raimondi Ivan, Gonz\u00e1lez Jovanna, Mart\u00ednez-Herrera Dannys Jorge, Athie Alejandro, Amadoz Alicia, Brosh Robert M, Huarte Maite", "reference": { "type": "PubMed", "id": "27477908", "url": "https://pubmed.ncbi.nlm.nih.gov/27477908" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q96FC9-1", 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"count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Timeless couples G-quadruplex detection with processing by DDX11 helicase during DNA replication.", "journal": "EMBO J.", "date": "2020", "authors": "Lerner LK, Holzer S, Kilkenny ML, Svikovic S, Murat P, Schiavone D, Eldridge CB, Bittleston A, Maman JD, Branzei D, Stott K, Pellegrini L, Sale JE", "reference": { "type": "PubMed", "id": "32705708", "url": "https://pubmed.ncbi.nlm.nih.gov/32705708" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q96FC9-1", "protein_name": "ATP-dependent DNA helicase DDX11", "gene_name": "DDX11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNS1-1", "protein_name": "Protein timeless homolog", "gene_name": "TIMELESS", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q96FC9", "url": 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Locus Modulates Systemic Lupus Erythematosus Susceptibility.", "journal": "International journal of molecular sciences", "date": "2021", "authors": "Saeed M, Ibanez-Costa A, Patino-Trives AM, Munoz-Barrera L, Collantes Estevez E, Aguirre MA, Lopez-Pedrera C", "reference": { "type": "PubMed", "id": "34299244", "url": "https://pubmed.ncbi.nlm.nih.gov/34299244" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q96FC9-1", "protein_name": "ATP-dependent DNA helicase DDX11", "gene_name": "DDX11", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q96FC9", "url": "https://www.uniprot.org/uniprotkb/Q96FC9" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.34299244", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": 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"DEAD/H-box helicase 11 is transcriptionally activated by Yin Yang-1 and accelerates oral squamous cell carcinoma progression.", "journal": "Cell biology international", "date": "2024-11", "authors": "Yang Guang, Shi Xin, Zhang Meixia, Wang Kaiwen, Tian Xin, Wang Xiaofeng", "reference": { "type": "PubMed", "id": "39090819", "url": "https://pubmed.ncbi.nlm.nih.gov/39090819" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q96FC9-1", "protein_name": "ATP-dependent DNA helicase DDX11", "gene_name": "DDX11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25490-1", "protein_name": "Transcriptional repressor protein YY1", "gene_name": "YY1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q96FC9", "url": "https://www.uniprot.org/uniprotkb/Q96FC9" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.39090819", 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Biol. Chem.", "date": "1996", "authors": "Frank S, Werner S", "reference": { "type": "PubMed", "id": "8798685", "url": "https://pubmed.ncbi.nlm.nih.gov/8798685" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q96FC9-1", "protein_name": "ATP-dependent DNA helicase DDX11", "gene_name": "DDX11", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q96FC9", "url": "https://www.uniprot.org/uniprotkb/Q96FC9" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.8798685", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Characterization of putative human homologues of the yeast chromosome transmission fidelity gene, CHL1.", "journal": "J. Biol. Chem.", "date": "1997", "authors": "Amann J, Kidd VJ, Lahti JM", "reference": { "type": "PubMed", "id": "9013641", "url": "https://pubmed.ncbi.nlm.nih.gov/9013641" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q96FC9-1", "protein_name": "ATP-dependent DNA helicase DDX11", "gene_name": "DDX11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92771-1", "protein_name": "Putative ATP-dependent DNA helicase DDX12", "gene_name": "DDX12P", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q96FC9", "url": "https://www.uniprot.org/uniprotkb/Q96FC9" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.9013641", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", 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Picard FP, Maurice K, Essioux L, Millasseau P, Grel P, Debailleul V, Simon AM, Caterina D, Dufaure I, Malekzadeh K, Belova M, Luan JJ, Bouillot M, Sambucy JL, Primas G, Saumier M, Boubkiri N, Martin-Saumier S, Nasroune M, Peixoto H, Delaye A, Pinchot V, Bastucci M, Guillou S, Chevillon M, Sainz-Fuertes R, Meguenni S, Aurich-Costa J, Cherif D, Gimalac A, Van Duijn C, Gauvreau D, Ouellette G, Fortier I, Raelson J, Sherbatich T, Riazanskaia N, Rogaev E, Raeymaekers P, Aerssens J, Konings F, Luyten W, Macciardi F, Sham PC, Straub RE, Weinberger DR, Cohen N, Cohen D", "reference": { "type": "PubMed", "id": "12364586", "url": "https://pubmed.ncbi.nlm.nih.gov/12364586" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P59103-1", "protein_name": "D-amino acid oxidase regulator", "gene_name": "DAOA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92915-1", "protein_name": "Fibroblast growth factor 14", "gene_name": "FGF14", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95965-1", "protein_name": "Integrin beta-like protein 1", "gene_name": "ITGBL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12908-1", "protein_name": "Ileal sodium/bile acid cotransporter", "gene_name": "SLC10A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IZF0-1", "protein_name": "Sodium leak channel NALCN", "gene_name": "NALCN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14920-1", "protein_name": "D-amino-acid oxidase", "gene_name": "DAO", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P59103", "url": "https://www.uniprot.org/uniprotkb/P59103" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.12364586", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", 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Mol. Neurobiol.", "date": "2014", "authors": "Otte DM, Rasko T, Wang M, Dreiseidler M, Drews E, Schrage H, Wojtalla A, Hohfeld J, Wanker E, Zimmer A", "reference": { "type": "PubMed", "id": "25078755", "url": "https://pubmed.ncbi.nlm.nih.gov/25078755" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P59103-1", "protein_name": "D-amino acid oxidase regulator", "gene_name": "DAOA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3D2-1", "protein_name": "Methionine-R-sulfoxide reductase B2, mitochondrial", "gene_name": "MSRB2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P59103", "url": "https://www.uniprot.org/uniprotkb/P59103" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.25078755", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], 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"glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Molecular Dynamics of CYFIP2 Protein and Its R87C Variant Related to Early Infantile Epileptic Encephalopathy.", 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tyrosine phosphorylation-regulated kinase 4 (DYRK4) differ in their subcellular localization and catalytic activity.", "journal": "The Journal of biological chemistry", "date": "2011", "authors": "Papadopoulos C, Arato K, Lilienthal E, Zerweck J, Schutkowski M, Chatain N, Muller-Newen G, Becker W, de la Luna S", "reference": { "type": "PubMed", "id": "21127067", "url": "https://pubmed.ncbi.nlm.nih.gov/21127067" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13627-1", "protein_name": "Dual specificity tyrosine-phosphorylation-regulated kinase 1A", "gene_name": "DYRK1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NR20-1", "protein_name": "Dual specificity tyrosine-phosphorylation-regulated kinase 4", "gene_name": "DYRK4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8BI55-1", "protein_name": "Dual specificity tyrosine-phosphorylation-regulated kinase 4", "gene_name": "Dyrk4", "tax_name": "Mouse" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13627", "url": "https://www.uniprot.org/uniprotkb/Q13627" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 264, "end_pos": 264, "sequence_org": "Y", "sequence_mut": "F", "comment": "Abolishes kinase activity.", "evidence": [ { "database": "UniProtKB", "id": "Q9NR20", "url": "https://www.uniprot.org/uniprotkb/Q9NR20" }, { "database": "PubMed", "id": "21127067", "url": "https://pubmed.ncbi.nlm.nih.gov/21127067" } ], "uniprot_canonical_ac": "Q9NR20-1" } ], "phosphorylation": [ { "start_pos": 264, "end_pos": 264, "kinase_uniprot_canonical_ac": "Q9NR20-1", "kinase_gene_name": "DYRK4", "residue": "Tyr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9NR20", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9NR20" }, { "database": "PubMed", "id": "21127067", "url": "https://pubmed.ncbi.nlm.nih.gov/21127067" }, { 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"count": 0 } ], "sort_fields": [] } ] }, { "title": "Intragenic deletion in DYRK1A leads to mental retardation and primary microcephaly.", "journal": "Clin. Genet.", "date": "2011", "authors": "van Bon B W M, Hoischen A, Hehir-Kwa J, de Brouwer A P M, Ruivenkamp C, Gijsbers A C J, Marcelis C L, de Leeuw N, Veltman J A, Brunner H G, de Vries B B A", "reference": { "type": "PubMed", "id": "21294719", "url": "https://pubmed.ncbi.nlm.nih.gov/21294719" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13627-1", "protein_name": "Dual specificity tyrosine-phosphorylation-regulated kinase 1A", "gene_name": "DYRK1A", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13627", "url": "https://www.uniprot.org/uniprotkb/Q13627" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.21294719", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": 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"n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": 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Mol. Genet.", "date": "1996", "authors": "Guimer\u00e1 J, Casas C, Pucharc\u00f2s C, Solans A, Dom\u00e8nech A, Planas A M, Ashley J, Lovett M, Estivill X, Pritchard M A", "reference": { "type": "PubMed", "id": "8872470", "url": "https://pubmed.ncbi.nlm.nih.gov/8872470" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13627-1", "protein_name": "Dual specificity tyrosine-phosphorylation-regulated kinase 1A", "gene_name": "DYRK1A", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13627", "url": "https://www.uniprot.org/uniprotkb/Q13627" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.8872470", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], 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