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Cell", "date": "2006", "authors": "Brzovic Peter S, Lissounov Alexei, Christensen Devin E, Hoyt David W, Klevit Rachel E", "reference": { "type": "PubMed", "id": "16543155", "url": "https://pubmed.ncbi.nlm.nih.gov/16543155" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P61077-1", "protein_name": "Ubiquitin-conjugating enzyme E2 D3", "gene_name": "UBE2D3", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P61077", "url": "https://www.uniprot.org/uniprotkb/P61077" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.16543155", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", 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"o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "E3-independent monoubiquitination of ubiquitin-binding proteins.", "journal": "Mol. Cell", "date": "2007", "authors": "Hoeller Daniela, Hecker Christina-Maria, Wagner Sebastian, Rogov Vladimir, D\u00f6tsch Volker, Dikic Ivan", "reference": { "type": "PubMed", "id": "17588522", "url": "https://pubmed.ncbi.nlm.nih.gov/17588522" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P61077-1", "protein_name": "Ubiquitin-conjugating enzyme E2 D3", "gene_name": "UBE2D3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51668-1", "protein_name": "Ubiquitin-conjugating enzyme E2 D1", "gene_name": "UBE2D1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49427-1", "protein_name": "Ubiquitin-conjugating enzyme E2 R1", "gene_name": "CDC34", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62256-1", "protein_name": "Ubiquitin-conjugating enzyme E2 H", "gene_name": "UBE2H", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00762-1", "protein_name": "Ubiquitin-conjugating enzyme E2 C", "gene_name": "UBE2C", "tax_name": "Human" }, { 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"tax_name": "Human" }, { "uniprot_canonical_ac": "O76064-1", "protein_name": "E3 ubiquitin-protein ligase RNF8", "gene_name": "RNF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12004-1", "protein_name": "DNA sliding clamp PCNA", "gene_name": "PCNA", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P61077", "url": "https://www.uniprot.org/uniprotkb/P61077" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.18948756", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { 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"uniprot_canonical_ac": "P61077-1", "protein_name": "Ubiquitin-conjugating enzyme E2 D3", "gene_name": "UBE2D3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13501-1", "protein_name": "Sequestosome-1", "gene_name": "SQSTM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62837-1", "protein_name": "Ubiquitin-conjugating enzyme E2 D2", "gene_name": "UBE2D2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P61077", "url": "https://www.uniprot.org/uniprotkb/P61077" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.28322253", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { 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"glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Ubiquitinome profiling reveals in vivo UBE2D3 targets and implicates UBE2D3 in protein quality control.", "journal": "Molecular & cellular proteomics : MCP", "date": "2023-04-12", "authors": "Yal\u00e7in Zeliha, Koot Dani\u00eblle, Bezstarosti Karel, Salas-Lloret Daniel, Bleijerveld Onno B, Boersma Vera, Falcone Mattia, Gonz\u00e1lez-Prieto Rom\u00e1n, Altelaar Maarten, Demmers Jeroen A A, Jacobs Jacqueline J L", "reference": { "type": "PubMed", "id": "37059365", "url": "https://pubmed.ncbi.nlm.nih.gov/37059365" }, "referenced_glycans": [], 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Biol. Chem.", "date": "1995", "authors": "Jensen JP, Bates PW, Yang M, Vierstra RD, Weissman AM", "reference": { "type": "PubMed", "id": "8530467", "url": "https://pubmed.ncbi.nlm.nih.gov/8530467" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P61077-1", "protein_name": "Ubiquitin-conjugating enzyme E2 D3", "gene_name": "UBE2D3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62837-1", "protein_name": "Ubiquitin-conjugating enzyme E2 D2", "gene_name": "UBE2D2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P61077", "url": "https://www.uniprot.org/uniprotkb/P61077" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.8530467", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { 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Endocrinology and metabolism", "date": "2021", "authors": "Liu B, Yi W, Mao X, Yang L, Rao C", "reference": { "type": "PubMed", "id": "33813878", "url": "https://pubmed.ncbi.nlm.nih.gov/33813878" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13011-1", "protein_name": "Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial", "gene_name": "ECH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O35459-1", "protein_name": "Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial", "gene_name": "Ech1", "tax_name": "Mouse" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13011", "url": "https://www.uniprot.org/uniprotkb/Q13011" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.33813878", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { 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"The mRNA export factor human Gle1 interacts with the nuclear pore complex protein Nup155.", "journal": "Mol. Cell. Proteomics", "date": "2004", "authors": "Rayala HJ, Kendirgi F, Barry DM, Majerus PW, Wente SR", "reference": { "type": "PubMed", "id": "14645504", "url": "https://pubmed.ncbi.nlm.nih.gov/14645504" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O75694-1", "protein_name": "Nuclear pore complex protein Nup155", "gene_name": "NUP155", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q53GS7-1", "protein_name": "mRNA export factor GLE1", "gene_name": "GLE1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "O75694", "url": "https://www.uniprot.org/uniprotkb/O75694" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.14645504", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { 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part of the p53 network in liver cancer.", "journal": "Nature communications", "date": "2019", "authors": "Holzer K, Ori A, Cooke A, Dauch D, Drucker E, Riemenschneider P, Andres-Pons A, DiGuilio AL, Mackmull MT, Bassler J, Roessler S, Breuhahn K, Zender L, Glavy JS, Dombrowski F, Hurt E, Schirmacher P, Beck M, Singer S", "reference": { "type": "PubMed", "id": "31089132", "url": "https://pubmed.ncbi.nlm.nih.gov/31089132" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O75694-1", "protein_name": "Nuclear pore complex protein Nup155", "gene_name": "NUP155", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "O75694", "url": "https://www.uniprot.org/uniprotkb/O75694" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.31089132", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": 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"count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "[Expression and function of terminal deoxynucleotidyl-transferase and discovery of novel DNA polymerase mu].", "journal": "Seikagaku. 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Chem.", "date": "2015", "authors": "Simonin Alexandre, Montalbetti Nicolas, Gyimesi Gergely, Pujol-Gim\u00e9nez Jonai, Hediger Matthias A", "reference": { "type": "PubMed", "id": "26483543", "url": "https://pubmed.ncbi.nlm.nih.gov/26483543" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P43004-1", "protein_name": "Excitatory amino acid transporter 2", "gene_name": "SLC1A2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P43004", "url": "https://www.uniprot.org/uniprotkb/P43004" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.26483543", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", 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Pharmacol.", "date": "1998", "authors": "Shimamoto K, Lebrun B, Yasuda-Kamatani Y, Sakaitani M, Shigeri Y, Yumoto N, Nakajima T", "reference": { "type": "PubMed", "id": "9463476", "url": "https://pubmed.ncbi.nlm.nih.gov/9463476" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P43004-1", "protein_name": "Excitatory amino acid transporter 2", "gene_name": "SLC1A2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P43004", "url": "https://www.uniprot.org/uniprotkb/P43004" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.9463476", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Identification of a gene coding for a new squamous cell carcinoma antigen recognized by the CTL.", "journal": "J. 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Arch. Allergy Immunol.", "date": "2004", "authors": "B\u00fchring Hans-J\u00f6rg, Streble Anna, Valent Peter", "reference": { "type": "PubMed", "id": "15031605", "url": "https://pubmed.ncbi.nlm.nih.gov/15031605" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O14638-1", "protein_name": "Ectonucleotide pyrophosphatase/phosphodiesterase family member 3", "gene_name": "ENPP3", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "O14638", "url": "https://www.uniprot.org/uniprotkb/O14638" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.15031605", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", 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