[ { "title": "Identification of eukaryotic and prokaryotic methylthiotransferase for biosynthesis of 2-methylthio-N6-threonylcarbamoyladenosine in tRNA.", "journal": "The Journal of biological chemistry", "date": "2010", "authors": "Arragain S, Handelman SK, Forouhar F, Wei FY, Tomizawa K, Hunt JF, Douki T, Fontecave M, Mulliez E, Atta M", "reference": { "type": "PubMed", "id": "20584901", "url": "https://pubmed.ncbi.nlm.nih.gov/20584901" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O14717-1", "protein_name": "tRNA (cytosine(38)-C(5))-methyltransferase", "gene_name": "TRDMT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BT7-1", "protein_name": "tRNA (carboxymethyluridine(34)-5-O)-methyltransferase ALKBH8", "gene_name": "ALKBH8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UI30-1", "protein_name": "Multifunctional methyltransferase subunit TRM112-like protein", "gene_name": "TRMT112", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08J23-1", "protein_name": "RNA cytosine C(5)-methyltransferase NSUN2", "gene_name": "NSUN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZE2-1", "protein_name": "tRNA pseudouridine(38/39) synthase", "gene_name": "PUS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96PZ0-1", "protein_name": "Pseudouridylate synthase 7 homolog", "gene_name": "PUS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H974-1", "protein_name": "Queuine tRNA-ribosyltransferase accessory subunit 2", "gene_name": "QTRT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NWX6-1", "protein_name": "Probable tRNA(His) guanylyltransferase", "gene_name": "THG1L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5VV42-1", "protein_name": "Threonylcarbamoyladenosine tRNA methylthiotransferase", "gene_name": "CDKAL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14657-1", "protein_name": "EKC/KEOPS complex subunit LAGE3", "gene_name": "LAGE3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P272-1", "protein_name": "Probable tRNA methyltransferase 9B", "gene_name": "TRMT9B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2VPK5-1", "protein_name": "Cytoplasmic tRNA 2-thiolation protein 2", "gene_name": "CTU2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z7A3-1", "protein_name": "Cytoplasmic tRNA 2-thiolation protein 1", "gene_name": "CTU1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTM9-1", "protein_name": "Ubiquitin-related modifier 1", "gene_name": "URM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NXH9-1", "protein_name": "tRNA (guanine(26)-N(2))-dimethyltransferase", "gene_name": "TRMT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z4G4-1", "protein_name": "tRNA (guanine(10)-N(2))-methyltransferase TRMT11", "gene_name": "TRMT11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EY9-1", "protein_name": "tRNA-specific adenosine-34 deaminase regulatory subunit ADAT3", "gene_name": "ADAT3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q91WE6-1", "protein_name": "Threonylcarbamoyladenosine tRNA methylthiotransferase", "gene_name": "Cdkal1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9BXV9-1", "protein_name": "EKC/KEOPS complex subunit GON7", "gene_name": "GON7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UET6-1", "protein_name": "tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase", "gene_name": "FTSJ1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UJA5-1", "protein_name": "tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6", "gene_name": "TRMT6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96S44-1", "protein_name": "EKC/KEOPS complex subunit TP53RK", "gene_name": "TP53RK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H3H1-1", "protein_name": "tRNA dimethylallyltransferase", "gene_name": "TRIT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPF4-1", "protein_name": "tRNA N6-adenosine threonylcarbamoyltransferase", "gene_name": "OSGEP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07814-1", "protein_name": "Bifunctional glutamate/proline--tRNA ligase", "gene_name": "EPRS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3C4-1", "protein_name": "EKC/KEOPS complex subunit TPRKB", "gene_name": "TPRKB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5T6V5-1", "protein_name": "Queuosine 5'-phosphate N-glycosylase/hydrolase", "gene_name": "QNG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXR0-1", "protein_name": "Queuine tRNA-ribosyltransferase catalytic subunit 1", "gene_name": "QTRT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96FX7-1", "protein_name": "tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A", "gene_name": "TRMT61A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TBZ6-1", "protein_name": "tRNA methyltransferase 10 homolog A", "gene_name": "TRMT10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYL2-1", "protein_name": "Probable tRNA (uracil-O(2)-)-methyltransferase", "gene_name": "TRMT44", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBP6-1", "protein_name": "tRNA (guanine-N(7)-)-methyltransferase", "gene_name": "METTL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TEA1-1", "protein_name": "tRNA (cytosine(72)-C(5))-methyltransferase NSUN6", "gene_name": "NSUN6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NX74-1", "protein_name": "tRNA-dihydrouridine(20) synthase [NAD(P)+]-like", "gene_name": "DUS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57081-1", "protein_name": "tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit WDR4", "gene_name": "WDR4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6YHU6-1", "protein_name": "tRNA (32-2'-O)-methyltransferase regulator THADA", "gene_name": "THADA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NUP7-1", "protein_name": "tRNA:m(4)X modification enzyme TRM13 homolog", "gene_name": "TRMT13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUB4-1", "protein_name": "tRNA-specific adenosine deaminase 1", "gene_name": "ADAT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z6V5-1", "protein_name": "tRNA-specific adenosine-34 deaminase catalytic subunit ADAT2", "gene_name": "ADAT2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "O14717", "url": "https://www.uniprot.org/uniprotkb/O14717" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.20584901", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 39 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "tRNA(His) guanylyltransferase (THG1), a unique 3'-5' nucleotidyl transferase, shares unexpected structural homology with canonical 5'-3' DNA polymerases.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2010", "authors": "Hyde SJ, Eckenroth BE, Smith BA, Eberley WA, Heintz NH, Jackman JE, Doublie S", "reference": { "type": "PubMed", "id": "21059936", "url": "https://pubmed.ncbi.nlm.nih.gov/21059936" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O14717-1", "protein_name": "tRNA (cytosine(38)-C(5))-methyltransferase", "gene_name": "TRDMT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BT7-1", "protein_name": "tRNA (carboxymethyluridine(34)-5-O)-methyltransferase ALKBH8", "gene_name": "ALKBH8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UI30-1", "protein_name": "Multifunctional methyltransferase subunit TRM112-like protein", "gene_name": "TRMT112", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08J23-1", "protein_name": "RNA cytosine C(5)-methyltransferase NSUN2", "gene_name": "NSUN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZE2-1", "protein_name": "tRNA pseudouridine(38/39) synthase", "gene_name": "PUS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96PZ0-1", "protein_name": "Pseudouridylate synthase 7 homolog", "gene_name": "PUS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H974-1", "protein_name": "Queuine tRNA-ribosyltransferase accessory subunit 2", "gene_name": "QTRT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NWX6-1", "protein_name": "Probable tRNA(His) guanylyltransferase", "gene_name": "THG1L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5VV42-1", "protein_name": "Threonylcarbamoyladenosine tRNA methylthiotransferase", "gene_name": "CDKAL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14657-1", "protein_name": "EKC/KEOPS complex subunit LAGE3", "gene_name": "LAGE3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P272-1", "protein_name": "Probable tRNA methyltransferase 9B", "gene_name": "TRMT9B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2VPK5-1", "protein_name": "Cytoplasmic tRNA 2-thiolation protein 2", "gene_name": "CTU2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z7A3-1", "protein_name": "Cytoplasmic tRNA 2-thiolation protein 1", "gene_name": "CTU1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTM9-1", "protein_name": "Ubiquitin-related modifier 1", "gene_name": "URM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NXH9-1", "protein_name": "tRNA (guanine(26)-N(2))-dimethyltransferase", "gene_name": "TRMT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z4G4-1", "protein_name": "tRNA (guanine(10)-N(2))-methyltransferase TRMT11", "gene_name": "TRMT11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EY9-1", "protein_name": "tRNA-specific adenosine-34 deaminase regulatory subunit ADAT3", "gene_name": "ADAT3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXV9-1", "protein_name": "EKC/KEOPS complex subunit GON7", "gene_name": "GON7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UET6-1", "protein_name": "tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase", "gene_name": "FTSJ1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UJA5-1", "protein_name": "tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6", "gene_name": "TRMT6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96S44-1", "protein_name": "EKC/KEOPS complex subunit TP53RK", "gene_name": "TP53RK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H3H1-1", "protein_name": "tRNA dimethylallyltransferase", "gene_name": "TRIT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPF4-1", "protein_name": "tRNA N6-adenosine threonylcarbamoyltransferase", "gene_name": "OSGEP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07814-1", "protein_name": "Bifunctional glutamate/proline--tRNA ligase", "gene_name": "EPRS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3C4-1", "protein_name": "EKC/KEOPS complex subunit TPRKB", "gene_name": "TPRKB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5T6V5-1", "protein_name": "Queuosine 5'-phosphate N-glycosylase/hydrolase", "gene_name": "QNG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXR0-1", "protein_name": "Queuine tRNA-ribosyltransferase catalytic subunit 1", "gene_name": "QTRT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96FX7-1", "protein_name": "tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A", "gene_name": "TRMT61A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TBZ6-1", "protein_name": "tRNA methyltransferase 10 homolog A", "gene_name": "TRMT10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYL2-1", "protein_name": "Probable tRNA (uracil-O(2)-)-methyltransferase", "gene_name": "TRMT44", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBP6-1", "protein_name": "tRNA (guanine-N(7)-)-methyltransferase", "gene_name": "METTL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TEA1-1", "protein_name": "tRNA (cytosine(72)-C(5))-methyltransferase NSUN6", "gene_name": "NSUN6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NX74-1", "protein_name": "tRNA-dihydrouridine(20) synthase [NAD(P)+]-like", "gene_name": "DUS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57081-1", "protein_name": "tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit WDR4", "gene_name": "WDR4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6YHU6-1", "protein_name": "tRNA (32-2'-O)-methyltransferase regulator THADA", "gene_name": "THADA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NUP7-1", "protein_name": "tRNA:m(4)X modification enzyme TRM13 homolog", "gene_name": "TRMT13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUB4-1", "protein_name": "tRNA-specific adenosine deaminase 1", "gene_name": "ADAT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z6V5-1", "protein_name": "tRNA-specific adenosine-34 deaminase catalytic subunit ADAT2", "gene_name": "ADAT2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "O14717", "url": "https://www.uniprot.org/uniprotkb/O14717" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 104, "end_pos": 104, "sequence_org": "S", "sequence_mut": "A", "comment": "Slightly reduced 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"start_pos": 127, "end_pos": 127, "sequence_org": "T", "sequence_mut": "A", "comment": "Abolishes oligomerization. Loss of enzyme activity.", "evidence": [ { "database": "UniProtKB", "id": "Q9NWX6", "url": "https://www.uniprot.org/uniprotkb/Q9NWX6" }, { "database": "PubMed", "id": "21059936", "url": "https://pubmed.ncbi.nlm.nih.gov/21059936" } ], "uniprot_canonical_ac": "Q9NWX6-1" }, { "start_pos": 181, "end_pos": 181, "sequence_org": "H", "sequence_mut": "A", "comment": "Loss of enzyme activity.", "evidence": [ { "database": "UniProtKB", "id": "Q9NWX6", "url": "https://www.uniprot.org/uniprotkb/Q9NWX6" }, { "database": "PubMed", "id": "21059936", "url": "https://pubmed.ncbi.nlm.nih.gov/21059936" } ], "uniprot_canonical_ac": "Q9NWX6-1" }, { "start_pos": 216, "end_pos": 216, "sequence_org": "K", "sequence_mut": "A", "comment": "Reduces activity by 98.5%.", "evidence": [ { "database": "UniProtKB", "id": "Q9NWX6", "url": "https://www.uniprot.org/uniprotkb/Q9NWX6" }, { "database": "PubMed", "id": "21059936", "url": "https://pubmed.ncbi.nlm.nih.gov/21059936" } ], "uniprot_canonical_ac": "Q9NWX6-1" }, { "start_pos": 227, "end_pos": 227, "sequence_org": "N", "sequence_mut": "A", "comment": "Loss of enzyme activity.", "evidence": [ { "database": "UniProtKB", "id": "Q9NWX6", "url": "https://www.uniprot.org/uniprotkb/Q9NWX6" }, { "database": "PubMed", "id": "21059936", "url": "https://pubmed.ncbi.nlm.nih.gov/21059936" } ], "uniprot_canonical_ac": "Q9NWX6-1" }, { "start_pos": 58, "end_pos": 58, "sequence_org": "D", "sequence_mut": "A", "comment": "Reduces activity by 99.5%.", "evidence": [ { "database": "UniProtKB", "id": "Q9NWX6", "url": "https://www.uniprot.org/uniprotkb/Q9NWX6" }, { "database": "PubMed", "id": "21059936", "url": "https://pubmed.ncbi.nlm.nih.gov/21059936" } ], "uniprot_canonical_ac": "Q9NWX6-1" }, { "start_pos": 63, "end_pos": 63, "sequence_org": "H", "sequence_mut": "A", "comment": "Slightly reduced enzyme activity.", "evidence": [ { "database": "UniProtKB", "id": "Q9NWX6", "url": "https://www.uniprot.org/uniprotkb/Q9NWX6" }, { "database": "PubMed", "id": "21059936", "url": "https://pubmed.ncbi.nlm.nih.gov/21059936" } ], "uniprot_canonical_ac": "Q9NWX6-1" } ], "record_id": "pubmed.21059936", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 38 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Evolution of eukaryal tRNA-guanine transglycosylase: insight gained from the heterocyclic substrate recognition by the wild-type and mutant human and Escherichia coli tRNA-guanine transglycosylases.", "journal": "Nucleic acids research", "date": "2011", "authors": "Chen YC, Brooks AF, Goodenough-Lashua DM, Kittendorf JD, Showalter HD, Garcia GA", "reference": { "type": "PubMed", "id": "21131277", "url": "https://pubmed.ncbi.nlm.nih.gov/21131277" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O14717-1", "protein_name": "tRNA (cytosine(38)-C(5))-methyltransferase", "gene_name": "TRDMT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BT7-1", "protein_name": "tRNA (carboxymethyluridine(34)-5-O)-methyltransferase ALKBH8", "gene_name": "ALKBH8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UI30-1", "protein_name": "Multifunctional methyltransferase subunit TRM112-like protein", "gene_name": "TRMT112", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08J23-1", "protein_name": "RNA cytosine C(5)-methyltransferase NSUN2", "gene_name": "NSUN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZE2-1", "protein_name": "tRNA pseudouridine(38/39) synthase", "gene_name": "PUS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96PZ0-1", "protein_name": "Pseudouridylate synthase 7 homolog", "gene_name": "PUS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H974-1", "protein_name": "Queuine tRNA-ribosyltransferase accessory subunit 2", "gene_name": "QTRT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NWX6-1", "protein_name": "Probable tRNA(His) guanylyltransferase", "gene_name": "THG1L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5VV42-1", "protein_name": "Threonylcarbamoyladenosine tRNA methylthiotransferase", "gene_name": "CDKAL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14657-1", "protein_name": "EKC/KEOPS complex subunit LAGE3", "gene_name": "LAGE3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P272-1", "protein_name": "Probable tRNA methyltransferase 9B", "gene_name": "TRMT9B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2VPK5-1", "protein_name": "Cytoplasmic tRNA 2-thiolation protein 2", "gene_name": "CTU2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z7A3-1", "protein_name": "Cytoplasmic tRNA 2-thiolation protein 1", "gene_name": "CTU1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTM9-1", "protein_name": "Ubiquitin-related modifier 1", "gene_name": "URM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NXH9-1", "protein_name": "tRNA (guanine(26)-N(2))-dimethyltransferase", "gene_name": "TRMT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z4G4-1", "protein_name": "tRNA (guanine(10)-N(2))-methyltransferase TRMT11", "gene_name": "TRMT11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EY9-1", "protein_name": "tRNA-specific adenosine-34 deaminase regulatory subunit ADAT3", "gene_name": "ADAT3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXV9-1", "protein_name": "EKC/KEOPS complex subunit GON7", "gene_name": "GON7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UET6-1", "protein_name": "tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase", "gene_name": "FTSJ1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UJA5-1", "protein_name": "tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6", "gene_name": "TRMT6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96S44-1", "protein_name": "EKC/KEOPS complex subunit TP53RK", "gene_name": "TP53RK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H3H1-1", "protein_name": "tRNA dimethylallyltransferase", "gene_name": "TRIT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPF4-1", "protein_name": "tRNA N6-adenosine threonylcarbamoyltransferase", "gene_name": "OSGEP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07814-1", "protein_name": "Bifunctional glutamate/proline--tRNA ligase", "gene_name": "EPRS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3C4-1", "protein_name": "EKC/KEOPS complex subunit TPRKB", "gene_name": "TPRKB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5T6V5-1", "protein_name": "Queuosine 5'-phosphate N-glycosylase/hydrolase", "gene_name": "QNG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXR0-1", "protein_name": "Queuine tRNA-ribosyltransferase catalytic subunit 1", "gene_name": "QTRT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96FX7-1", "protein_name": "tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A", "gene_name": "TRMT61A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TBZ6-1", "protein_name": "tRNA methyltransferase 10 homolog A", "gene_name": "TRMT10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYL2-1", "protein_name": "Probable tRNA (uracil-O(2)-)-methyltransferase", "gene_name": "TRMT44", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBP6-1", "protein_name": "tRNA (guanine-N(7)-)-methyltransferase", "gene_name": "METTL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TEA1-1", "protein_name": "tRNA (cytosine(72)-C(5))-methyltransferase NSUN6", "gene_name": "NSUN6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NX74-1", "protein_name": "tRNA-dihydrouridine(20) synthase [NAD(P)+]-like", "gene_name": "DUS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57081-1", "protein_name": "tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit WDR4", "gene_name": "WDR4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6YHU6-1", "protein_name": "tRNA (32-2'-O)-methyltransferase regulator THADA", "gene_name": "THADA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NUP7-1", "protein_name": "tRNA:m(4)X modification enzyme TRM13 homolog", "gene_name": "TRMT13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUB4-1", "protein_name": "tRNA-specific adenosine deaminase 1", "gene_name": "ADAT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z6V5-1", "protein_name": "tRNA-specific adenosine-34 deaminase catalytic subunit ADAT2", "gene_name": "ADAT2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "O14717", "url": "https://www.uniprot.org/uniprotkb/O14717" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.21131277", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 38 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Widespread occurrence of 5-methylcytosine in human coding and non-coding RNA.", "journal": "Nucleic acids research", "date": "2012", "authors": "Squires JE, Patel HR, Nousch M, Sibbritt T, Humphreys DT, Parker BJ, Suter CM, Preiss T", "reference": { "type": "PubMed", "id": "22344696", "url": "https://pubmed.ncbi.nlm.nih.gov/22344696" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O14717-1", "protein_name": "tRNA (cytosine(38)-C(5))-methyltransferase", "gene_name": "TRDMT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BT7-1", "protein_name": "tRNA (carboxymethyluridine(34)-5-O)-methyltransferase ALKBH8", "gene_name": "ALKBH8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UI30-1", "protein_name": "Multifunctional methyltransferase subunit TRM112-like protein", "gene_name": "TRMT112", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08J23-1", "protein_name": "RNA cytosine C(5)-methyltransferase NSUN2", "gene_name": "NSUN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZE2-1", "protein_name": "tRNA pseudouridine(38/39) synthase", "gene_name": "PUS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96PZ0-1", "protein_name": "Pseudouridylate synthase 7 homolog", "gene_name": "PUS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H974-1", "protein_name": "Queuine tRNA-ribosyltransferase accessory subunit 2", "gene_name": "QTRT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NWX6-1", "protein_name": "Probable tRNA(His) guanylyltransferase", "gene_name": "THG1L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5VV42-1", "protein_name": "Threonylcarbamoyladenosine tRNA methylthiotransferase", "gene_name": "CDKAL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14657-1", "protein_name": "EKC/KEOPS complex subunit LAGE3", "gene_name": "LAGE3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P272-1", "protein_name": "Probable tRNA methyltransferase 9B", "gene_name": "TRMT9B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2VPK5-1", "protein_name": "Cytoplasmic tRNA 2-thiolation protein 2", "gene_name": "CTU2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z7A3-1", "protein_name": "Cytoplasmic tRNA 2-thiolation protein 1", "gene_name": "CTU1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTM9-1", "protein_name": "Ubiquitin-related modifier 1", "gene_name": "URM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NXH9-1", "protein_name": "tRNA (guanine(26)-N(2))-dimethyltransferase", "gene_name": "TRMT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z4G4-1", "protein_name": "tRNA (guanine(10)-N(2))-methyltransferase TRMT11", "gene_name": "TRMT11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EY9-1", "protein_name": "tRNA-specific adenosine-34 deaminase regulatory subunit ADAT3", "gene_name": "ADAT3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXV9-1", "protein_name": "EKC/KEOPS complex subunit GON7", "gene_name": "GON7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UET6-1", "protein_name": "tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase", "gene_name": "FTSJ1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UJA5-1", "protein_name": "tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6", "gene_name": "TRMT6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96S44-1", "protein_name": "EKC/KEOPS complex subunit TP53RK", "gene_name": "TP53RK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H3H1-1", "protein_name": "tRNA dimethylallyltransferase", "gene_name": "TRIT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPF4-1", "protein_name": "tRNA N6-adenosine threonylcarbamoyltransferase", "gene_name": "OSGEP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07814-1", "protein_name": "Bifunctional glutamate/proline--tRNA ligase", "gene_name": "EPRS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3C4-1", "protein_name": "EKC/KEOPS complex subunit TPRKB", "gene_name": "TPRKB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5T6V5-1", "protein_name": "Queuosine 5'-phosphate N-glycosylase/hydrolase", "gene_name": "QNG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXR0-1", "protein_name": "Queuine tRNA-ribosyltransferase catalytic subunit 1", "gene_name": "QTRT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96FX7-1", "protein_name": "tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A", "gene_name": "TRMT61A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TBZ6-1", "protein_name": "tRNA methyltransferase 10 homolog A", "gene_name": "TRMT10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYL2-1", "protein_name": "Probable tRNA (uracil-O(2)-)-methyltransferase", "gene_name": "TRMT44", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBP6-1", "protein_name": "tRNA (guanine-N(7)-)-methyltransferase", "gene_name": "METTL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TEA1-1", "protein_name": "tRNA (cytosine(72)-C(5))-methyltransferase NSUN6", "gene_name": "NSUN6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NX74-1", "protein_name": "tRNA-dihydrouridine(20) synthase [NAD(P)+]-like", "gene_name": "DUS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57081-1", "protein_name": "tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit WDR4", "gene_name": "WDR4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6YHU6-1", "protein_name": "tRNA (32-2'-O)-methyltransferase regulator THADA", "gene_name": "THADA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NUP7-1", "protein_name": "tRNA:m(4)X modification enzyme TRM13 homolog", "gene_name": "TRMT13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUB4-1", "protein_name": "tRNA-specific adenosine deaminase 1", "gene_name": "ADAT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z6V5-1", "protein_name": "tRNA-specific adenosine-34 deaminase catalytic subunit ADAT2", "gene_name": "ADAT2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "O14717", "url": "https://www.uniprot.org/uniprotkb/O14717" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.22344696", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 38 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { 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"total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Mapping the tRNA binding site on the surface of human DNMT2 methyltransferase.", "journal": "Biochemistry", "date": "2012", "authors": "Jurkowski TP, Shanmugam R, Helm M, Jeltsch A", "reference": { "type": "PubMed", "id": "22591353", "url": "https://pubmed.ncbi.nlm.nih.gov/22591353" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O14717-1", "protein_name": "tRNA (cytosine(38)-C(5))-methyltransferase", "gene_name": "TRDMT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BT7-1", "protein_name": "tRNA (carboxymethyluridine(34)-5-O)-methyltransferase ALKBH8", "gene_name": "ALKBH8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UI30-1", "protein_name": "Multifunctional methyltransferase subunit TRM112-like protein", "gene_name": "TRMT112", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08J23-1", "protein_name": "RNA cytosine C(5)-methyltransferase NSUN2", "gene_name": "NSUN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZE2-1", "protein_name": "tRNA pseudouridine(38/39) synthase", "gene_name": "PUS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96PZ0-1", "protein_name": "Pseudouridylate synthase 7 homolog", "gene_name": "PUS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H974-1", "protein_name": "Queuine tRNA-ribosyltransferase accessory subunit 2", "gene_name": "QTRT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NWX6-1", "protein_name": "Probable tRNA(His) guanylyltransferase", "gene_name": "THG1L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5VV42-1", "protein_name": "Threonylcarbamoyladenosine tRNA methylthiotransferase", "gene_name": "CDKAL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14657-1", "protein_name": "EKC/KEOPS complex subunit LAGE3", "gene_name": "LAGE3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P272-1", "protein_name": "Probable tRNA methyltransferase 9B", "gene_name": "TRMT9B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2VPK5-1", "protein_name": "Cytoplasmic tRNA 2-thiolation protein 2", "gene_name": "CTU2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z7A3-1", "protein_name": "Cytoplasmic tRNA 2-thiolation protein 1", "gene_name": "CTU1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTM9-1", "protein_name": "Ubiquitin-related modifier 1", "gene_name": "URM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NXH9-1", "protein_name": "tRNA (guanine(26)-N(2))-dimethyltransferase", "gene_name": "TRMT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z4G4-1", "protein_name": "tRNA (guanine(10)-N(2))-methyltransferase TRMT11", "gene_name": "TRMT11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EY9-1", "protein_name": "tRNA-specific adenosine-34 deaminase regulatory subunit ADAT3", "gene_name": "ADAT3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXV9-1", "protein_name": "EKC/KEOPS complex subunit GON7", "gene_name": "GON7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UET6-1", "protein_name": "tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase", "gene_name": "FTSJ1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UJA5-1", "protein_name": "tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6", "gene_name": "TRMT6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96S44-1", "protein_name": "EKC/KEOPS complex subunit TP53RK", "gene_name": "TP53RK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H3H1-1", "protein_name": "tRNA dimethylallyltransferase", "gene_name": "TRIT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPF4-1", "protein_name": "tRNA N6-adenosine threonylcarbamoyltransferase", "gene_name": "OSGEP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07814-1", "protein_name": "Bifunctional glutamate/proline--tRNA ligase", "gene_name": "EPRS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3C4-1", "protein_name": "EKC/KEOPS complex subunit TPRKB", "gene_name": "TPRKB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5T6V5-1", "protein_name": "Queuosine 5'-phosphate N-glycosylase/hydrolase", "gene_name": "QNG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXR0-1", "protein_name": "Queuine tRNA-ribosyltransferase catalytic subunit 1", "gene_name": "QTRT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96FX7-1", "protein_name": "tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A", "gene_name": "TRMT61A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TBZ6-1", "protein_name": "tRNA methyltransferase 10 homolog A", "gene_name": "TRMT10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYL2-1", "protein_name": "Probable tRNA (uracil-O(2)-)-methyltransferase", "gene_name": "TRMT44", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBP6-1", "protein_name": "tRNA (guanine-N(7)-)-methyltransferase", "gene_name": "METTL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TEA1-1", "protein_name": "tRNA (cytosine(72)-C(5))-methyltransferase NSUN6", "gene_name": "NSUN6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NX74-1", "protein_name": "tRNA-dihydrouridine(20) synthase [NAD(P)+]-like", "gene_name": "DUS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57081-1", "protein_name": "tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit WDR4", "gene_name": "WDR4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6YHU6-1", "protein_name": "tRNA (32-2'-O)-methyltransferase regulator THADA", "gene_name": "THADA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NUP7-1", "protein_name": "tRNA:m(4)X modification enzyme TRM13 homolog", "gene_name": "TRMT13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUB4-1", "protein_name": "tRNA-specific adenosine deaminase 1", "gene_name": "ADAT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z6V5-1", "protein_name": "tRNA-specific adenosine-34 deaminase catalytic subunit ADAT2", "gene_name": "ADAT2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "O14717", "url": "https://www.uniprot.org/uniprotkb/O14717" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.22591353", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 38 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The human tRNA m (5) C methyltransferase Misu is multisite-specific.", "journal": "RNA biology", "date": "2012", "authors": "Auxilien S, Guerineau V, Szweykowska-Kulinska Z, Golinelli-Pimpaneau B", "reference": { "type": "PubMed", "id": "22995836", "url": "https://pubmed.ncbi.nlm.nih.gov/22995836" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O14717-1", "protein_name": "tRNA (cytosine(38)-C(5))-methyltransferase", "gene_name": "TRDMT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BT7-1", "protein_name": "tRNA (carboxymethyluridine(34)-5-O)-methyltransferase ALKBH8", "gene_name": "ALKBH8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UI30-1", "protein_name": "Multifunctional methyltransferase subunit TRM112-like protein", "gene_name": "TRMT112", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08J23-1", "protein_name": "RNA cytosine C(5)-methyltransferase NSUN2", "gene_name": "NSUN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZE2-1", "protein_name": "tRNA pseudouridine(38/39) synthase", "gene_name": "PUS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96PZ0-1", "protein_name": "Pseudouridylate synthase 7 homolog", "gene_name": "PUS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H974-1", "protein_name": "Queuine tRNA-ribosyltransferase accessory subunit 2", "gene_name": "QTRT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NWX6-1", "protein_name": "Probable tRNA(His) guanylyltransferase", "gene_name": "THG1L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5VV42-1", "protein_name": "Threonylcarbamoyladenosine tRNA methylthiotransferase", "gene_name": "CDKAL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14657-1", "protein_name": "EKC/KEOPS complex subunit LAGE3", "gene_name": "LAGE3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P272-1", "protein_name": "Probable tRNA methyltransferase 9B", "gene_name": "TRMT9B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2VPK5-1", "protein_name": "Cytoplasmic tRNA 2-thiolation protein 2", "gene_name": "CTU2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z7A3-1", "protein_name": "Cytoplasmic tRNA 2-thiolation protein 1", "gene_name": "CTU1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTM9-1", "protein_name": "Ubiquitin-related modifier 1", "gene_name": "URM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NXH9-1", "protein_name": "tRNA (guanine(26)-N(2))-dimethyltransferase", "gene_name": "TRMT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z4G4-1", "protein_name": "tRNA (guanine(10)-N(2))-methyltransferase TRMT11", "gene_name": "TRMT11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EY9-1", "protein_name": "tRNA-specific adenosine-34 deaminase regulatory subunit ADAT3", "gene_name": "ADAT3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXV9-1", "protein_name": "EKC/KEOPS complex subunit GON7", "gene_name": "GON7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UET6-1", "protein_name": "tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase", "gene_name": "FTSJ1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UJA5-1", "protein_name": "tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6", "gene_name": "TRMT6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96S44-1", "protein_name": "EKC/KEOPS complex subunit TP53RK", "gene_name": "TP53RK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H3H1-1", "protein_name": "tRNA dimethylallyltransferase", "gene_name": "TRIT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPF4-1", "protein_name": "tRNA N6-adenosine threonylcarbamoyltransferase", "gene_name": "OSGEP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07814-1", "protein_name": "Bifunctional glutamate/proline--tRNA ligase", "gene_name": "EPRS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3C4-1", "protein_name": "EKC/KEOPS complex subunit TPRKB", "gene_name": "TPRKB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5T6V5-1", "protein_name": "Queuosine 5'-phosphate N-glycosylase/hydrolase", "gene_name": "QNG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXR0-1", "protein_name": "Queuine tRNA-ribosyltransferase catalytic subunit 1", "gene_name": "QTRT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96FX7-1", "protein_name": "tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A", "gene_name": "TRMT61A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TBZ6-1", "protein_name": "tRNA methyltransferase 10 homolog A", "gene_name": "TRMT10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYL2-1", "protein_name": "Probable tRNA (uracil-O(2)-)-methyltransferase", "gene_name": "TRMT44", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBP6-1", "protein_name": "tRNA (guanine-N(7)-)-methyltransferase", "gene_name": "METTL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TEA1-1", "protein_name": "tRNA (cytosine(72)-C(5))-methyltransferase NSUN6", "gene_name": "NSUN6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NX74-1", "protein_name": "tRNA-dihydrouridine(20) synthase [NAD(P)+]-like", "gene_name": "DUS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57081-1", "protein_name": "tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit WDR4", "gene_name": "WDR4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6YHU6-1", "protein_name": "tRNA (32-2'-O)-methyltransferase regulator THADA", "gene_name": "THADA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NUP7-1", "protein_name": "tRNA:m(4)X modification enzyme TRM13 homolog", "gene_name": "TRMT13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUB4-1", "protein_name": "tRNA-specific adenosine deaminase 1", "gene_name": "ADAT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z6V5-1", "protein_name": "tRNA-specific adenosine-34 deaminase catalytic subunit ADAT2", "gene_name": "ADAT2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "O14717", "url": "https://www.uniprot.org/uniprotkb/O14717" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.22995836", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 38 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A subcomplex of human mitochondrial RNase P is a bifunctional methyltransferase--extensive moonlighting in mitochondrial tRNA biogenesis.", "journal": "Nucleic acids research", "date": "2012", "authors": "Vilardo E, Nachbagauer C, Buzet A, Taschner A, Holzmann J, Rossmanith W", "reference": { "type": "PubMed", "id": "23042678", "url": "https://pubmed.ncbi.nlm.nih.gov/23042678" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O14717-1", "protein_name": "tRNA (cytosine(38)-C(5))-methyltransferase", "gene_name": "TRDMT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BT7-1", "protein_name": "tRNA (carboxymethyluridine(34)-5-O)-methyltransferase ALKBH8", "gene_name": "ALKBH8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UI30-1", "protein_name": "Multifunctional methyltransferase subunit TRM112-like protein", "gene_name": "TRMT112", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BVS5-1", "protein_name": "tRNA (adenine(58)-N(1))-methyltransferase, mitochondrial", "gene_name": "TRMT61B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08J23-1", "protein_name": "RNA cytosine C(5)-methyltransferase NSUN2", "gene_name": "NSUN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZE2-1", "protein_name": "tRNA pseudouridine(38/39) synthase", "gene_name": "PUS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96PZ0-1", "protein_name": "Pseudouridylate synthase 7 homolog", "gene_name": "PUS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H974-1", "protein_name": "Queuine tRNA-ribosyltransferase accessory subunit 2", "gene_name": "QTRT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NWX6-1", "protein_name": "Probable tRNA(His) guanylyltransferase", "gene_name": "THG1L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5VV42-1", "protein_name": "Threonylcarbamoyladenosine tRNA methylthiotransferase", "gene_name": "CDKAL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14657-1", "protein_name": "EKC/KEOPS complex subunit LAGE3", "gene_name": "LAGE3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15091-1", "protein_name": "Mitochondrial ribonuclease P catalytic subunit", "gene_name": "PRORP", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75648-1", "protein_name": "Mitochondrial tRNA-specific 2-thiouridylase 1", "gene_name": "TRMU", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P272-1", "protein_name": "Probable tRNA methyltransferase 9B", "gene_name": "TRMT9B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2VPK5-1", "protein_name": "Cytoplasmic tRNA 2-thiolation protein 2", "gene_name": "CTU2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z7A3-1", "protein_name": "Cytoplasmic tRNA 2-thiolation protein 1", "gene_name": "CTU1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTM9-1", "protein_name": "Ubiquitin-related modifier 1", "gene_name": "URM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NXH9-1", "protein_name": "tRNA (guanine(26)-N(2))-dimethyltransferase", "gene_name": "TRMT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z4G4-1", "protein_name": "tRNA (guanine(10)-N(2))-methyltransferase TRMT11", "gene_name": "TRMT11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EY9-1", "protein_name": "tRNA-specific adenosine-34 deaminase regulatory subunit ADAT3", "gene_name": "ADAT3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXV9-1", "protein_name": "EKC/KEOPS complex subunit GON7", "gene_name": "GON7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96Q11-1", "protein_name": "CCA tRNA nucleotidyltransferase 1, mitochondrial", "gene_name": "TRNT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UET6-1", "protein_name": "tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase", "gene_name": "FTSJ1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UJA5-1", "protein_name": "tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6", "gene_name": "TRMT6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96S44-1", "protein_name": "EKC/KEOPS complex subunit TP53RK", "gene_name": "TP53RK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H3H1-1", "protein_name": "tRNA dimethylallyltransferase", "gene_name": "TRIT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2Z2-1", "protein_name": "5-taurinomethyluridine-[tRNA] synthase subunit MTO1, mitochondrial", "gene_name": "MTO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H4B0-1", "protein_name": "tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial", "gene_name": "OSGEPL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPF4-1", "protein_name": "tRNA N6-adenosine threonylcarbamoyltransferase", "gene_name": "OSGEP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BQ52-1", "protein_name": "Zinc phosphodiesterase ELAC protein 2", "gene_name": "ELAC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07814-1", "protein_name": "Bifunctional glutamate/proline--tRNA ligase", "gene_name": "EPRS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7L0Y3-1", "protein_name": "tRNA methyltransferase 10 homolog C", "gene_name": "TRMT10C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3C4-1", "protein_name": "EKC/KEOPS complex subunit TPRKB", "gene_name": "TPRKB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5T6V5-1", "protein_name": "Queuosine 5'-phosphate N-glycosylase/hydrolase", "gene_name": "QNG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXR0-1", "protein_name": "Queuine tRNA-ribosyltransferase catalytic subunit 1", "gene_name": "QTRT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6PF06-1", "protein_name": "tRNA methyltransferase 10 homolog B", "gene_name": "TRMT10B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96FX7-1", "protein_name": "tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A", "gene_name": "TRMT61A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TBZ6-1", "protein_name": "tRNA methyltransferase 10 homolog A", "gene_name": "TRMT10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYL2-1", "protein_name": "Probable tRNA (uracil-O(2)-)-methyltransferase", "gene_name": "TRMT44", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBP6-1", "protein_name": "tRNA (guanine-N(7)-)-methyltransferase", "gene_name": "METTL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TEA1-1", "protein_name": "tRNA (cytosine(72)-C(5))-methyltransferase NSUN6", "gene_name": "NSUN6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86U90-1", "protein_name": "Threonylcarbamoyl-AMP synthase", "gene_name": "YRDC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NX74-1", "protein_name": "tRNA-dihydrouridine(20) synthase [NAD(P)+]-like", "gene_name": "DUS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57081-1", "protein_name": "tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit WDR4", "gene_name": "WDR4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969Y2-1", "protein_name": "5-taurinomethyluridine-[tRNA] synthase subunit GTPB3, mitochondrial", "gene_name": "GTPBP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6YHU6-1", "protein_name": "tRNA (32-2'-O)-methyltransferase regulator THADA", "gene_name": "THADA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NUP7-1", "protein_name": "tRNA:m(4)X modification enzyme TRM13 homolog", "gene_name": "TRMT13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99714-1", "protein_name": "3-hydroxyacyl-CoA dehydrogenase type-2", "gene_name": "HSD17B10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUB4-1", "protein_name": "tRNA-specific adenosine deaminase 1", "gene_name": "ADAT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z6V5-1", "protein_name": "tRNA-specific adenosine-34 deaminase catalytic subunit ADAT2", "gene_name": "ADAT2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "O14717", "url": "https://www.uniprot.org/uniprotkb/O14717" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 314, "end_pos": 314, "sequence_org": "D", "sequence_mut": "N", "comment": "Abolished mitochondrial tRNA methylation. Does not affect mitochondrial tRNA 5'-end processing.", "evidence": [ { "database": "UniProtKB", "id": "Q7L0Y3", "url": "https://www.uniprot.org/uniprotkb/Q7L0Y3" }, { "database": "PubMed", "id": "23042678", "url": "https://pubmed.ncbi.nlm.nih.gov/23042678" } ], "uniprot_canonical_ac": "Q7L0Y3-1" }, { "start_pos": 172, "end_pos": 172, "sequence_org": "K", "sequence_mut": "A", "comment": "Abolishes dehydrogenase activity. Does not affect mitochondrial tRNA 5'-end processing. Does not affect tRNA methylation. Does not affect homotetramerization.", "evidence": [ { "database": "UniProtKB", "id": "Q99714", "url": "https://www.uniprot.org/uniprotkb/Q99714" }, { "database": "PubMed", "id": "23042678", "url": "https://pubmed.ncbi.nlm.nih.gov/23042678" }, { "database": "PubMed", "id": "25925575", "url": "https://pubmed.ncbi.nlm.nih.gov/25925575" } ], "uniprot_canonical_ac": "Q99714-1" }, { "start_pos": 20, "end_pos": 20, "sequence_org": "S", "sequence_mut": "F", "comment": "Decreased dehydrogenase activity. Does not affect mitochondrial tRNA 5'-end processing. Does not affect tRNA methylation.", "evidence": [ { "database": "UniProtKB", "id": "Q99714", "url": "https://www.uniprot.org/uniprotkb/Q99714" }, { "database": "PubMed", "id": "23042678", "url": "https://pubmed.ncbi.nlm.nih.gov/23042678" }, { "database": "PubMed", "id": "25925575", "url": "https://pubmed.ncbi.nlm.nih.gov/25925575" } ], "uniprot_canonical_ac": "Q99714-1" } ], "record_id": "pubmed.23042678", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 50 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "CDK5 regulatory subunit-associated protein 1-like 1 (CDKAL1) is a tail-anchored protein in the endoplasmic reticulum (ER) of insulinoma cells.", "journal": "The Journal of biological chemistry", "date": "2012", "authors": "Brambillasca S, Altkrueger A, Colombo SF, Friederich A, Eickelmann P, Mark M, Borgese N, Solimena M", "reference": { "type": "PubMed", "id": "23048041", "url": "https://pubmed.ncbi.nlm.nih.gov/23048041" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O14717-1", "protein_name": "tRNA (cytosine(38)-C(5))-methyltransferase", "gene_name": "TRDMT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BT7-1", "protein_name": "tRNA (carboxymethyluridine(34)-5-O)-methyltransferase ALKBH8", "gene_name": "ALKBH8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UI30-1", "protein_name": "Multifunctional methyltransferase subunit TRM112-like protein", "gene_name": "TRMT112", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08J23-1", "protein_name": "RNA cytosine C(5)-methyltransferase NSUN2", "gene_name": "NSUN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZE2-1", "protein_name": "tRNA pseudouridine(38/39) synthase", "gene_name": "PUS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96PZ0-1", "protein_name": "Pseudouridylate synthase 7 homolog", "gene_name": "PUS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H974-1", "protein_name": "Queuine tRNA-ribosyltransferase accessory subunit 2", "gene_name": "QTRT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NWX6-1", "protein_name": "Probable tRNA(His) guanylyltransferase", "gene_name": "THG1L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5VV42-1", "protein_name": "Threonylcarbamoyladenosine tRNA methylthiotransferase", "gene_name": "CDKAL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14657-1", "protein_name": "EKC/KEOPS complex subunit LAGE3", "gene_name": "LAGE3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P272-1", "protein_name": "Probable tRNA methyltransferase 9B", "gene_name": "TRMT9B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2VPK5-1", "protein_name": "Cytoplasmic tRNA 2-thiolation protein 2", "gene_name": "CTU2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z7A3-1", "protein_name": "Cytoplasmic tRNA 2-thiolation protein 1", "gene_name": "CTU1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTM9-1", "protein_name": "Ubiquitin-related modifier 1", "gene_name": "URM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NXH9-1", "protein_name": "tRNA (guanine(26)-N(2))-dimethyltransferase", "gene_name": "TRMT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z4G4-1", "protein_name": "tRNA (guanine(10)-N(2))-methyltransferase TRMT11", "gene_name": "TRMT11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EY9-1", "protein_name": "tRNA-specific adenosine-34 deaminase regulatory subunit ADAT3", "gene_name": "ADAT3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q91WE6-1", "protein_name": "Threonylcarbamoyladenosine tRNA methylthiotransferase", "gene_name": "Cdkal1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9BXV9-1", "protein_name": "EKC/KEOPS complex subunit GON7", "gene_name": "GON7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UET6-1", "protein_name": "tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase", "gene_name": "FTSJ1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UJA5-1", "protein_name": "tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6", "gene_name": "TRMT6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96S44-1", "protein_name": "EKC/KEOPS complex subunit TP53RK", "gene_name": "TP53RK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H3H1-1", "protein_name": "tRNA dimethylallyltransferase", "gene_name": "TRIT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPF4-1", "protein_name": "tRNA N6-adenosine threonylcarbamoyltransferase", "gene_name": "OSGEP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07814-1", "protein_name": "Bifunctional glutamate/proline--tRNA ligase", "gene_name": "EPRS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3C4-1", "protein_name": "EKC/KEOPS complex subunit TPRKB", "gene_name": "TPRKB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5T6V5-1", "protein_name": "Queuosine 5'-phosphate N-glycosylase/hydrolase", "gene_name": "QNG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXR0-1", "protein_name": "Queuine tRNA-ribosyltransferase catalytic subunit 1", "gene_name": "QTRT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96FX7-1", "protein_name": "tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A", "gene_name": "TRMT61A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TBZ6-1", "protein_name": "tRNA methyltransferase 10 homolog A", "gene_name": "TRMT10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYL2-1", "protein_name": "Probable tRNA (uracil-O(2)-)-methyltransferase", "gene_name": "TRMT44", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBP6-1", "protein_name": "tRNA (guanine-N(7)-)-methyltransferase", "gene_name": "METTL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TEA1-1", "protein_name": "tRNA (cytosine(72)-C(5))-methyltransferase NSUN6", "gene_name": "NSUN6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NX74-1", "protein_name": "tRNA-dihydrouridine(20) synthase [NAD(P)+]-like", "gene_name": "DUS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57081-1", "protein_name": "tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit WDR4", "gene_name": "WDR4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6YHU6-1", "protein_name": "tRNA (32-2'-O)-methyltransferase regulator THADA", "gene_name": "THADA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NUP7-1", "protein_name": "tRNA:m(4)X modification enzyme TRM13 homolog", "gene_name": "TRMT13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUB4-1", "protein_name": "tRNA-specific adenosine deaminase 1", "gene_name": "ADAT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z6V5-1", "protein_name": "tRNA-specific adenosine-34 deaminase catalytic subunit ADAT2", "gene_name": "ADAT2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "O14717", "url": "https://www.uniprot.org/uniprotkb/O14717" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.23048041", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 39 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A human tRNA methyltransferase 9-like protein prevents tumour growth by regulating LIN9 and HIF1-alpha.", "journal": "EMBO molecular medicine", "date": "2013", "authors": "Begley U, Sosa MS, Avivar-Valderas A, Patil A, Endres L, Estrada Y, Chan CT, Su D, Dedon PC, Aguirre-Ghiso JA, Begley T", "reference": { "type": "PubMed", "id": "23381944", "url": "https://pubmed.ncbi.nlm.nih.gov/23381944" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O14717-1", "protein_name": "tRNA (cytosine(38)-C(5))-methyltransferase", "gene_name": "TRDMT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BT7-1", "protein_name": "tRNA (carboxymethyluridine(34)-5-O)-methyltransferase ALKBH8", "gene_name": "ALKBH8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UI30-1", "protein_name": "Multifunctional methyltransferase subunit TRM112-like protein", "gene_name": "TRMT112", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08J23-1", "protein_name": "RNA cytosine C(5)-methyltransferase NSUN2", "gene_name": "NSUN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZE2-1", "protein_name": "tRNA pseudouridine(38/39) synthase", "gene_name": "PUS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96PZ0-1", "protein_name": "Pseudouridylate synthase 7 homolog", "gene_name": "PUS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H974-1", "protein_name": "Queuine tRNA-ribosyltransferase accessory subunit 2", "gene_name": "QTRT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NWX6-1", "protein_name": "Probable tRNA(His) guanylyltransferase", "gene_name": "THG1L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5VV42-1", "protein_name": "Threonylcarbamoyladenosine tRNA methylthiotransferase", "gene_name": "CDKAL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14657-1", "protein_name": "EKC/KEOPS complex subunit LAGE3", "gene_name": "LAGE3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P272-1", "protein_name": "Probable tRNA methyltransferase 9B", "gene_name": "TRMT9B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2VPK5-1", "protein_name": "Cytoplasmic tRNA 2-thiolation protein 2", "gene_name": "CTU2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z7A3-1", "protein_name": "Cytoplasmic tRNA 2-thiolation protein 1", "gene_name": "CTU1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTM9-1", "protein_name": "Ubiquitin-related modifier 1", "gene_name": "URM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NXH9-1", "protein_name": "tRNA (guanine(26)-N(2))-dimethyltransferase", "gene_name": "TRMT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z4G4-1", "protein_name": "tRNA (guanine(10)-N(2))-methyltransferase TRMT11", "gene_name": "TRMT11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EY9-1", "protein_name": "tRNA-specific adenosine-34 deaminase regulatory subunit ADAT3", "gene_name": "ADAT3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXV9-1", "protein_name": "EKC/KEOPS complex subunit GON7", "gene_name": "GON7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UET6-1", "protein_name": "tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase", "gene_name": "FTSJ1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UJA5-1", "protein_name": "tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6", "gene_name": "TRMT6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96S44-1", "protein_name": "EKC/KEOPS complex subunit TP53RK", "gene_name": "TP53RK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H3H1-1", "protein_name": "tRNA dimethylallyltransferase", "gene_name": "TRIT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPF4-1", "protein_name": "tRNA N6-adenosine threonylcarbamoyltransferase", "gene_name": "OSGEP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07814-1", "protein_name": "Bifunctional glutamate/proline--tRNA ligase", "gene_name": "EPRS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3C4-1", "protein_name": "EKC/KEOPS complex subunit TPRKB", "gene_name": "TPRKB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5T6V5-1", "protein_name": "Queuosine 5'-phosphate N-glycosylase/hydrolase", "gene_name": "QNG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXR0-1", "protein_name": "Queuine tRNA-ribosyltransferase catalytic subunit 1", "gene_name": "QTRT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96FX7-1", "protein_name": "tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A", "gene_name": "TRMT61A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TBZ6-1", "protein_name": "tRNA methyltransferase 10 homolog A", "gene_name": "TRMT10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYL2-1", "protein_name": "Probable tRNA (uracil-O(2)-)-methyltransferase", "gene_name": "TRMT44", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBP6-1", "protein_name": "tRNA (guanine-N(7)-)-methyltransferase", "gene_name": "METTL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TEA1-1", "protein_name": "tRNA (cytosine(72)-C(5))-methyltransferase NSUN6", "gene_name": "NSUN6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NX74-1", "protein_name": "tRNA-dihydrouridine(20) synthase [NAD(P)+]-like", "gene_name": "DUS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57081-1", "protein_name": "tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit WDR4", "gene_name": "WDR4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6YHU6-1", "protein_name": "tRNA (32-2'-O)-methyltransferase regulator THADA", "gene_name": "THADA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NUP7-1", "protein_name": "tRNA:m(4)X modification enzyme TRM13 homolog", "gene_name": "TRMT13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUB4-1", "protein_name": "tRNA-specific adenosine deaminase 1", "gene_name": "ADAT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z6V5-1", "protein_name": "tRNA-specific adenosine-34 deaminase catalytic subunit ADAT2", "gene_name": "ADAT2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "O14717", "url": "https://www.uniprot.org/uniprotkb/O14717" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.23381944", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 38 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": 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"o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Identification of direct targets and modified bases of RNA cytosine methyltransferases.", "journal": "Nature biotechnology", "date": "2013", "authors": "Khoddami V, Cairns BR", "reference": { "type": "PubMed", "id": "23604283", "url": "https://pubmed.ncbi.nlm.nih.gov/23604283" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O14717-1", "protein_name": "tRNA (cytosine(38)-C(5))-methyltransferase", "gene_name": "TRDMT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BT7-1", "protein_name": "tRNA (carboxymethyluridine(34)-5-O)-methyltransferase ALKBH8", "gene_name": "ALKBH8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UI30-1", "protein_name": "Multifunctional methyltransferase subunit TRM112-like protein", "gene_name": "TRMT112", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08J23-1", "protein_name": "RNA cytosine C(5)-methyltransferase NSUN2", "gene_name": "NSUN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZE2-1", "protein_name": "tRNA pseudouridine(38/39) synthase", "gene_name": "PUS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96PZ0-1", "protein_name": "Pseudouridylate synthase 7 homolog", "gene_name": "PUS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H974-1", "protein_name": 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"protein_name": "Ubiquitin-related modifier 1", "gene_name": "URM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NXH9-1", "protein_name": "tRNA (guanine(26)-N(2))-dimethyltransferase", "gene_name": "TRMT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z4G4-1", "protein_name": "tRNA (guanine(10)-N(2))-methyltransferase TRMT11", "gene_name": "TRMT11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EY9-1", "protein_name": "tRNA-specific adenosine-34 deaminase regulatory subunit ADAT3", "gene_name": "ADAT3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXV9-1", "protein_name": "EKC/KEOPS complex subunit GON7", "gene_name": "GON7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UET6-1", "protein_name": "tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase", "gene_name": "FTSJ1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UJA5-1", "protein_name": "tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6", "gene_name": "TRMT6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96S44-1", "protein_name": "EKC/KEOPS complex subunit TP53RK", "gene_name": "TP53RK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H3H1-1", "protein_name": "tRNA dimethylallyltransferase", "gene_name": "TRIT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPF4-1", "protein_name": "tRNA N6-adenosine threonylcarbamoyltransferase", "gene_name": "OSGEP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07814-1", "protein_name": "Bifunctional glutamate/proline--tRNA ligase", "gene_name": "EPRS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3C4-1", "protein_name": "EKC/KEOPS complex subunit TPRKB", "gene_name": "TPRKB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5T6V5-1", "protein_name": "Queuosine 5'-phosphate N-glycosylase/hydrolase", "gene_name": "QNG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXR0-1", "protein_name": "Queuine tRNA-ribosyltransferase catalytic subunit 1", "gene_name": "QTRT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96FX7-1", "protein_name": "tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A", "gene_name": "TRMT61A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TBZ6-1", "protein_name": "tRNA methyltransferase 10 homolog A", "gene_name": "TRMT10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYL2-1", "protein_name": "Probable tRNA (uracil-O(2)-)-methyltransferase", "gene_name": "TRMT44", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBP6-1", "protein_name": "tRNA (guanine-N(7)-)-methyltransferase", "gene_name": "METTL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TEA1-1", "protein_name": "tRNA (cytosine(72)-C(5))-methyltransferase NSUN6", "gene_name": "NSUN6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NX74-1", "protein_name": "tRNA-dihydrouridine(20) synthase [NAD(P)+]-like", "gene_name": "DUS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57081-1", "protein_name": "tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit WDR4", "gene_name": "WDR4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6YHU6-1", "protein_name": "tRNA (32-2'-O)-methyltransferase regulator THADA", "gene_name": "THADA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NUP7-1", "protein_name": "tRNA:m(4)X modification enzyme TRM13 homolog", "gene_name": "TRMT13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUB4-1", "protein_name": "tRNA-specific adenosine deaminase 1", "gene_name": "ADAT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z6V5-1", "protein_name": "tRNA-specific adenosine-34 deaminase catalytic subunit ADAT2", "gene_name": "ADAT2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "O14717", "url": "https://www.uniprot.org/uniprotkb/O14717" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.23604283", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 38 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Human cells have a limited set of tRNA anticodon loop substrates of the tRNA isopentenyltransferase TRIT1 tumor suppressor.", "journal": "Molecular and cellular biology", "date": "2013", "authors": "Lamichhane TN, Mattijssen S, Maraia RJ", "reference": { "type": "PubMed", "id": "24126054", "url": "https://pubmed.ncbi.nlm.nih.gov/24126054" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O14717-1", "protein_name": "tRNA (cytosine(38)-C(5))-methyltransferase", "gene_name": "TRDMT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BT7-1", "protein_name": "tRNA (carboxymethyluridine(34)-5-O)-methyltransferase ALKBH8", "gene_name": "ALKBH8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UI30-1", "protein_name": "Multifunctional methyltransferase subunit TRM112-like protein", "gene_name": "TRMT112", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BVS5-1", "protein_name": "tRNA (adenine(58)-N(1))-methyltransferase, mitochondrial", "gene_name": "TRMT61B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08J23-1", "protein_name": "RNA cytosine C(5)-methyltransferase NSUN2", "gene_name": "NSUN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZE2-1", "protein_name": "tRNA pseudouridine(38/39) synthase", "gene_name": "PUS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96PZ0-1", "protein_name": "Pseudouridylate synthase 7 homolog", "gene_name": "PUS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H974-1", "protein_name": "Queuine tRNA-ribosyltransferase accessory subunit 2", "gene_name": "QTRT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NWX6-1", "protein_name": "Probable tRNA(His) guanylyltransferase", "gene_name": "THG1L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5VV42-1", "protein_name": "Threonylcarbamoyladenosine tRNA methylthiotransferase", "gene_name": "CDKAL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14657-1", "protein_name": "EKC/KEOPS complex subunit LAGE3", "gene_name": "LAGE3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15091-1", "protein_name": "Mitochondrial ribonuclease P catalytic subunit", "gene_name": "PRORP", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75648-1", "protein_name": "Mitochondrial tRNA-specific 2-thiouridylase 1", "gene_name": "TRMU", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P272-1", "protein_name": "Probable tRNA methyltransferase 9B", "gene_name": "TRMT9B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2VPK5-1", "protein_name": "Cytoplasmic tRNA 2-thiolation protein 2", "gene_name": "CTU2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z7A3-1", "protein_name": "Cytoplasmic tRNA 2-thiolation protein 1", "gene_name": "CTU1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTM9-1", "protein_name": "Ubiquitin-related modifier 1", "gene_name": "URM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NXH9-1", "protein_name": "tRNA (guanine(26)-N(2))-dimethyltransferase", "gene_name": "TRMT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z4G4-1", "protein_name": "tRNA (guanine(10)-N(2))-methyltransferase TRMT11", "gene_name": "TRMT11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EY9-1", "protein_name": "tRNA-specific adenosine-34 deaminase regulatory subunit ADAT3", "gene_name": "ADAT3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXV9-1", "protein_name": "EKC/KEOPS complex subunit GON7", "gene_name": "GON7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UET6-1", "protein_name": "tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase", "gene_name": "FTSJ1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UJA5-1", "protein_name": "tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6", "gene_name": "TRMT6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96S44-1", "protein_name": "EKC/KEOPS complex subunit TP53RK", "gene_name": "TP53RK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H3H1-1", "protein_name": "tRNA dimethylallyltransferase", "gene_name": "TRIT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2Z2-1", "protein_name": "5-taurinomethyluridine-[tRNA] synthase subunit MTO1, mitochondrial", "gene_name": "MTO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H4B0-1", "protein_name": "tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial", "gene_name": "OSGEPL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPF4-1", "protein_name": "tRNA N6-adenosine threonylcarbamoyltransferase", "gene_name": "OSGEP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07814-1", "protein_name": "Bifunctional glutamate/proline--tRNA ligase", "gene_name": "EPRS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7L0Y3-1", "protein_name": "tRNA methyltransferase 10 homolog C", "gene_name": "TRMT10C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3C4-1", "protein_name": "EKC/KEOPS complex subunit TPRKB", "gene_name": "TPRKB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5T6V5-1", "protein_name": "Queuosine 5'-phosphate N-glycosylase/hydrolase", "gene_name": "QNG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXR0-1", "protein_name": "Queuine tRNA-ribosyltransferase catalytic subunit 1", "gene_name": "QTRT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96FX7-1", "protein_name": "tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A", "gene_name": "TRMT61A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TBZ6-1", "protein_name": "tRNA methyltransferase 10 homolog A", "gene_name": "TRMT10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYL2-1", "protein_name": "Probable tRNA (uracil-O(2)-)-methyltransferase", "gene_name": "TRMT44", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBP6-1", "protein_name": "tRNA (guanine-N(7)-)-methyltransferase", "gene_name": "METTL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TEA1-1", "protein_name": "tRNA (cytosine(72)-C(5))-methyltransferase NSUN6", "gene_name": "NSUN6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86U90-1", "protein_name": "Threonylcarbamoyl-AMP synthase", "gene_name": "YRDC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NX74-1", "protein_name": "tRNA-dihydrouridine(20) synthase [NAD(P)+]-like", "gene_name": "DUS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57081-1", "protein_name": "tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit WDR4", "gene_name": "WDR4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969Y2-1", "protein_name": "5-taurinomethyluridine-[tRNA] synthase subunit GTPB3, mitochondrial", "gene_name": "GTPBP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6YHU6-1", "protein_name": "tRNA (32-2'-O)-methyltransferase regulator THADA", "gene_name": "THADA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NUP7-1", "protein_name": "tRNA:m(4)X modification enzyme TRM13 homolog", "gene_name": "TRMT13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99714-1", "protein_name": "3-hydroxyacyl-CoA dehydrogenase type-2", "gene_name": "HSD17B10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUB4-1", "protein_name": "tRNA-specific adenosine deaminase 1", "gene_name": "ADAT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z6V5-1", "protein_name": "tRNA-specific adenosine-34 deaminase catalytic subunit ADAT2", "gene_name": "ADAT2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "O14717", "url": "https://www.uniprot.org/uniprotkb/O14717" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.24126054", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 47 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "tRNA methyltransferase homolog gene TRMT10A mutation in young onset diabetes and primary microcephaly in humans.", "journal": "PLoS genetics", "date": "2013", "authors": "Igoillo-Esteve M, Genin A, Lambert N, Desir J, Pirson I, Abdulkarim B, Simonis N, Drielsma A, Marselli L, Marchetti P, Vanderhaeghen P, Eizirik DL, Wuyts W, Julier C, Chakera AJ, Ellard S, Hattersley AT, Abramowicz M, Cnop M", "reference": { "type": "PubMed", "id": "24204302", "url": "https://pubmed.ncbi.nlm.nih.gov/24204302" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O14717-1", "protein_name": "tRNA (cytosine(38)-C(5))-methyltransferase", "gene_name": "TRDMT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BT7-1", "protein_name": "tRNA (carboxymethyluridine(34)-5-O)-methyltransferase ALKBH8", "gene_name": "ALKBH8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UI30-1", "protein_name": "Multifunctional methyltransferase subunit TRM112-like protein", "gene_name": "TRMT112", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q4KLI2-1", "protein_name": "tRNA methyltransferase 10 homolog A", "gene_name": "Trmt10a", "tax_name": "Rat" }, { "uniprot_canonical_ac": "Q08J23-1", "protein_name": "RNA cytosine C(5)-methyltransferase NSUN2", "gene_name": "NSUN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZE2-1", "protein_name": "tRNA pseudouridine(38/39) synthase", "gene_name": "PUS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96PZ0-1", "protein_name": "Pseudouridylate synthase 7 homolog", "gene_name": "PUS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H974-1", "protein_name": "Queuine tRNA-ribosyltransferase accessory subunit 2", "gene_name": "QTRT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NWX6-1", "protein_name": "Probable tRNA(His) guanylyltransferase", "gene_name": "THG1L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5VV42-1", "protein_name": "Threonylcarbamoyladenosine tRNA methylthiotransferase", "gene_name": "CDKAL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14657-1", "protein_name": "EKC/KEOPS complex subunit LAGE3", "gene_name": "LAGE3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P272-1", "protein_name": "Probable tRNA methyltransferase 9B", "gene_name": "TRMT9B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2VPK5-1", "protein_name": "Cytoplasmic tRNA 2-thiolation protein 2", "gene_name": "CTU2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z7A3-1", "protein_name": "Cytoplasmic tRNA 2-thiolation protein 1", "gene_name": "CTU1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTM9-1", "protein_name": "Ubiquitin-related modifier 1", "gene_name": "URM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NXH9-1", "protein_name": "tRNA (guanine(26)-N(2))-dimethyltransferase", "gene_name": "TRMT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z4G4-1", "protein_name": "tRNA (guanine(10)-N(2))-methyltransferase TRMT11", "gene_name": "TRMT11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EY9-1", "protein_name": "tRNA-specific adenosine-34 deaminase regulatory subunit ADAT3", "gene_name": "ADAT3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXV9-1", "protein_name": "EKC/KEOPS complex subunit GON7", "gene_name": "GON7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UET6-1", "protein_name": "tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase", "gene_name": "FTSJ1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UJA5-1", "protein_name": "tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6", "gene_name": "TRMT6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96S44-1", "protein_name": "EKC/KEOPS complex subunit TP53RK", "gene_name": "TP53RK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H3H1-1", "protein_name": "tRNA dimethylallyltransferase", "gene_name": "TRIT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPF4-1", "protein_name": "tRNA N6-adenosine threonylcarbamoyltransferase", "gene_name": "OSGEP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07814-1", "protein_name": "Bifunctional glutamate/proline--tRNA ligase", "gene_name": "EPRS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3C4-1", "protein_name": "EKC/KEOPS complex subunit TPRKB", "gene_name": "TPRKB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5T6V5-1", "protein_name": "Queuosine 5'-phosphate N-glycosylase/hydrolase", "gene_name": "QNG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXR0-1", "protein_name": "Queuine tRNA-ribosyltransferase catalytic subunit 1", "gene_name": "QTRT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96FX7-1", "protein_name": "tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A", "gene_name": "TRMT61A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TBZ6-1", "protein_name": "tRNA methyltransferase 10 homolog A", "gene_name": "TRMT10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYL2-1", "protein_name": "Probable tRNA (uracil-O(2)-)-methyltransferase", "gene_name": "TRMT44", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBP6-1", "protein_name": "tRNA (guanine-N(7)-)-methyltransferase", "gene_name": "METTL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TEA1-1", "protein_name": "tRNA (cytosine(72)-C(5))-methyltransferase NSUN6", "gene_name": "NSUN6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NX74-1", "protein_name": "tRNA-dihydrouridine(20) synthase [NAD(P)+]-like", "gene_name": "DUS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57081-1", "protein_name": "tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit WDR4", "gene_name": "WDR4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6YHU6-1", "protein_name": "tRNA (32-2'-O)-methyltransferase regulator THADA", "gene_name": "THADA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NUP7-1", "protein_name": "tRNA:m(4)X modification enzyme TRM13 homolog", "gene_name": "TRMT13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUB4-1", "protein_name": "tRNA-specific adenosine deaminase 1", "gene_name": "ADAT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z6V5-1", "protein_name": "tRNA-specific adenosine-34 deaminase catalytic subunit ADAT2", "gene_name": "ADAT2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "O14717", "url": "https://www.uniprot.org/uniprotkb/O14717" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.24204302", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 39 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Defective i6A37 modification of mitochondrial and cytosolic tRNAs results from pathogenic mutations in TRIT1 and its substrate tRNA.", "journal": "PLoS genetics", "date": "2014", "authors": "Yarham JW, Lamichhane TN, Pyle A, Mattijssen S, Baruffini E, Bruni F, Donnini C, Vassilev A, He L, Blakely EL, Griffin H, Santibanez-Koref M, Bindoff LA, Ferrero I, Chinnery PF, McFarland R, Maraia RJ, Taylor RW", "reference": { "type": "PubMed", "id": "24901367", "url": "https://pubmed.ncbi.nlm.nih.gov/24901367" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O14717-1", "protein_name": "tRNA (cytosine(38)-C(5))-methyltransferase", "gene_name": "TRDMT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BT7-1", "protein_name": "tRNA (carboxymethyluridine(34)-5-O)-methyltransferase ALKBH8", "gene_name": "ALKBH8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UI30-1", "protein_name": "Multifunctional methyltransferase subunit TRM112-like protein", "gene_name": "TRMT112", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BVS5-1", "protein_name": "tRNA (adenine(58)-N(1))-methyltransferase, mitochondrial", "gene_name": "TRMT61B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08J23-1", "protein_name": "RNA cytosine C(5)-methyltransferase NSUN2", "gene_name": "NSUN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZE2-1", "protein_name": "tRNA pseudouridine(38/39) synthase", "gene_name": "PUS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96PZ0-1", "protein_name": "Pseudouridylate synthase 7 homolog", "gene_name": "PUS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H974-1", "protein_name": "Queuine tRNA-ribosyltransferase accessory subunit 2", "gene_name": "QTRT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NWX6-1", "protein_name": "Probable tRNA(His) guanylyltransferase", "gene_name": "THG1L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5VV42-1", "protein_name": "Threonylcarbamoyladenosine tRNA methylthiotransferase", "gene_name": "CDKAL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14657-1", "protein_name": "EKC/KEOPS complex subunit LAGE3", "gene_name": "LAGE3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15091-1", "protein_name": "Mitochondrial ribonuclease P catalytic subunit", "gene_name": "PRORP", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75648-1", "protein_name": "Mitochondrial tRNA-specific 2-thiouridylase 1", "gene_name": "TRMU", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P272-1", "protein_name": "Probable tRNA methyltransferase 9B", "gene_name": "TRMT9B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2VPK5-1", "protein_name": "Cytoplasmic tRNA 2-thiolation protein 2", "gene_name": "CTU2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z7A3-1", "protein_name": "Cytoplasmic tRNA 2-thiolation protein 1", "gene_name": "CTU1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTM9-1", "protein_name": "Ubiquitin-related modifier 1", "gene_name": "URM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NXH9-1", "protein_name": "tRNA (guanine(26)-N(2))-dimethyltransferase", "gene_name": "TRMT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z4G4-1", "protein_name": "tRNA (guanine(10)-N(2))-methyltransferase TRMT11", "gene_name": "TRMT11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EY9-1", "protein_name": "tRNA-specific adenosine-34 deaminase regulatory subunit ADAT3", "gene_name": "ADAT3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXV9-1", "protein_name": "EKC/KEOPS complex subunit GON7", "gene_name": "GON7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UET6-1", "protein_name": "tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase", "gene_name": "FTSJ1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UJA5-1", "protein_name": "tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6", "gene_name": "TRMT6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96S44-1", "protein_name": "EKC/KEOPS complex subunit TP53RK", "gene_name": "TP53RK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H3H1-1", "protein_name": "tRNA dimethylallyltransferase", "gene_name": "TRIT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2Z2-1", "protein_name": "5-taurinomethyluridine-[tRNA] synthase subunit MTO1, mitochondrial", "gene_name": "MTO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H4B0-1", "protein_name": "tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial", "gene_name": "OSGEPL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPF4-1", "protein_name": "tRNA N6-adenosine threonylcarbamoyltransferase", "gene_name": "OSGEP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07814-1", "protein_name": "Bifunctional glutamate/proline--tRNA ligase", "gene_name": "EPRS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7L0Y3-1", "protein_name": "tRNA methyltransferase 10 homolog C", "gene_name": "TRMT10C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3C4-1", "protein_name": "EKC/KEOPS complex subunit TPRKB", "gene_name": "TPRKB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5T6V5-1", "protein_name": "Queuosine 5'-phosphate N-glycosylase/hydrolase", "gene_name": "QNG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXR0-1", "protein_name": "Queuine tRNA-ribosyltransferase catalytic subunit 1", "gene_name": "QTRT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96FX7-1", "protein_name": "tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A", "gene_name": "TRMT61A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TBZ6-1", "protein_name": "tRNA methyltransferase 10 homolog A", "gene_name": "TRMT10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYL2-1", "protein_name": "Probable tRNA (uracil-O(2)-)-methyltransferase", "gene_name": "TRMT44", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBP6-1", "protein_name": "tRNA (guanine-N(7)-)-methyltransferase", "gene_name": "METTL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TEA1-1", "protein_name": "tRNA (cytosine(72)-C(5))-methyltransferase NSUN6", "gene_name": "NSUN6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86U90-1", "protein_name": "Threonylcarbamoyl-AMP synthase", "gene_name": "YRDC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NX74-1", "protein_name": "tRNA-dihydrouridine(20) synthase [NAD(P)+]-like", "gene_name": "DUS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57081-1", "protein_name": "tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit WDR4", "gene_name": "WDR4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969Y2-1", "protein_name": "5-taurinomethyluridine-[tRNA] synthase subunit GTPB3, mitochondrial", "gene_name": "GTPBP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6YHU6-1", "protein_name": "tRNA (32-2'-O)-methyltransferase regulator THADA", "gene_name": "THADA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NUP7-1", "protein_name": "tRNA:m(4)X modification enzyme TRM13 homolog", "gene_name": "TRMT13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99714-1", "protein_name": "3-hydroxyacyl-CoA dehydrogenase type-2", "gene_name": "HSD17B10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUB4-1", "protein_name": "tRNA-specific adenosine deaminase 1", "gene_name": "ADAT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z6V5-1", "protein_name": "tRNA-specific adenosine-34 deaminase catalytic subunit ADAT2", "gene_name": "ADAT2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "O14717", "url": "https://www.uniprot.org/uniprotkb/O14717" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.24901367", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 47 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": 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"glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The cytoplasmic and nuclear populations of the eukaryote tRNA-isopentenyl transferase have distinct functions with implications in human cancer.", "journal": "Gene", "date": "2015", "authors": "Smaldino PJ, Read DF, Pratt-Hyatt M, Hopper AK, Engelke DR", "reference": { "type": "PubMed", "id": "25261850", "url": "https://pubmed.ncbi.nlm.nih.gov/25261850" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O14717-1", "protein_name": "tRNA (cytosine(38)-C(5))-methyltransferase", "gene_name": "TRDMT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BT7-1", "protein_name": "tRNA (carboxymethyluridine(34)-5-O)-methyltransferase ALKBH8", "gene_name": "ALKBH8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UI30-1", "protein_name": "Multifunctional methyltransferase subunit TRM112-like protein", "gene_name": "TRMT112", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08J23-1", "protein_name": "RNA cytosine C(5)-methyltransferase NSUN2", "gene_name": "NSUN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZE2-1", "protein_name": "tRNA pseudouridine(38/39) synthase", "gene_name": "PUS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96PZ0-1", "protein_name": "Pseudouridylate synthase 7 homolog", "gene_name": "PUS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H974-1", "protein_name": "Queuine tRNA-ribosyltransferase accessory subunit 2", "gene_name": "QTRT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NWX6-1", "protein_name": "Probable tRNA(His) guanylyltransferase", "gene_name": "THG1L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5VV42-1", "protein_name": "Threonylcarbamoyladenosine tRNA methylthiotransferase", "gene_name": "CDKAL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14657-1", "protein_name": "EKC/KEOPS complex subunit LAGE3", "gene_name": "LAGE3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P272-1", "protein_name": "Probable tRNA methyltransferase 9B", "gene_name": "TRMT9B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2VPK5-1", "protein_name": "Cytoplasmic tRNA 2-thiolation protein 2", "gene_name": "CTU2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z7A3-1", "protein_name": "Cytoplasmic tRNA 2-thiolation protein 1", "gene_name": "CTU1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTM9-1", "protein_name": "Ubiquitin-related modifier 1", "gene_name": "URM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NXH9-1", "protein_name": "tRNA (guanine(26)-N(2))-dimethyltransferase", "gene_name": "TRMT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z4G4-1", "protein_name": "tRNA (guanine(10)-N(2))-methyltransferase TRMT11", "gene_name": "TRMT11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EY9-1", "protein_name": "tRNA-specific adenosine-34 deaminase regulatory subunit ADAT3", "gene_name": "ADAT3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXV9-1", "protein_name": "EKC/KEOPS complex subunit GON7", "gene_name": "GON7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UET6-1", "protein_name": "tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase", "gene_name": "FTSJ1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UJA5-1", "protein_name": "tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6", "gene_name": "TRMT6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96S44-1", "protein_name": "EKC/KEOPS complex subunit TP53RK", "gene_name": "TP53RK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H3H1-1", "protein_name": "tRNA dimethylallyltransferase", "gene_name": "TRIT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPF4-1", "protein_name": "tRNA N6-adenosine threonylcarbamoyltransferase", "gene_name": "OSGEP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07814-1", "protein_name": "Bifunctional glutamate/proline--tRNA ligase", "gene_name": "EPRS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3C4-1", "protein_name": "EKC/KEOPS complex subunit TPRKB", "gene_name": "TPRKB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5T6V5-1", "protein_name": "Queuosine 5'-phosphate N-glycosylase/hydrolase", "gene_name": "QNG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXR0-1", "protein_name": "Queuine tRNA-ribosyltransferase catalytic subunit 1", "gene_name": "QTRT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96FX7-1", "protein_name": "tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A", "gene_name": "TRMT61A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TBZ6-1", "protein_name": "tRNA methyltransferase 10 homolog A", "gene_name": "TRMT10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYL2-1", "protein_name": "Probable tRNA (uracil-O(2)-)-methyltransferase", "gene_name": "TRMT44", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBP6-1", "protein_name": "tRNA (guanine-N(7)-)-methyltransferase", "gene_name": "METTL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TEA1-1", "protein_name": "tRNA (cytosine(72)-C(5))-methyltransferase NSUN6", "gene_name": "NSUN6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NX74-1", "protein_name": "tRNA-dihydrouridine(20) synthase [NAD(P)+]-like", "gene_name": "DUS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57081-1", "protein_name": "tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit WDR4", "gene_name": "WDR4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6YHU6-1", "protein_name": "tRNA (32-2'-O)-methyltransferase regulator THADA", "gene_name": "THADA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NUP7-1", "protein_name": "tRNA:m(4)X modification enzyme TRM13 homolog", "gene_name": "TRMT13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUB4-1", "protein_name": "tRNA-specific adenosine deaminase 1", "gene_name": "ADAT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z6V5-1", "protein_name": "tRNA-specific adenosine-34 deaminase catalytic subunit ADAT2", "gene_name": "ADAT2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "O14717", "url": "https://www.uniprot.org/uniprotkb/O14717" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.25261850", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 38 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Conservation of an intricate circuit for crucial modifications of the tRNAPhe anticodon loop in eukaryotes.", "journal": "RNA (New York, N.Y.)", "date": "2015", "authors": "Guy MP, Phizicky EM", "reference": { "type": "PubMed", "id": "25404562", "url": "https://pubmed.ncbi.nlm.nih.gov/25404562" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O14717-1", "protein_name": "tRNA (cytosine(38)-C(5))-methyltransferase", "gene_name": "TRDMT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BT7-1", "protein_name": "tRNA (carboxymethyluridine(34)-5-O)-methyltransferase ALKBH8", "gene_name": "ALKBH8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UI30-1", "protein_name": "Multifunctional methyltransferase subunit TRM112-like protein", "gene_name": "TRMT112", "tax_name": "Human" }, { "uniprot_canonical_ac": "P38238-1", "protein_name": "tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase", "gene_name": "TRM7", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q08J23-1", "protein_name": "RNA cytosine C(5)-methyltransferase NSUN2", "gene_name": "NSUN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZE2-1", "protein_name": "tRNA pseudouridine(38/39) synthase", "gene_name": "PUS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96PZ0-1", "protein_name": "Pseudouridylate synthase 7 homolog", "gene_name": "PUS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H974-1", "protein_name": "Queuine tRNA-ribosyltransferase accessory subunit 2", "gene_name": "QTRT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NWX6-1", "protein_name": "Probable tRNA(His) guanylyltransferase", "gene_name": "THG1L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5VV42-1", "protein_name": "Threonylcarbamoyladenosine tRNA methylthiotransferase", "gene_name": "CDKAL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14657-1", "protein_name": "EKC/KEOPS complex subunit LAGE3", "gene_name": "LAGE3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P272-1", "protein_name": "Probable tRNA methyltransferase 9B", "gene_name": "TRMT9B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2VPK5-1", "protein_name": "Cytoplasmic tRNA 2-thiolation protein 2", "gene_name": "CTU2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z7A3-1", "protein_name": "Cytoplasmic tRNA 2-thiolation protein 1", "gene_name": "CTU1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTM9-1", "protein_name": "Ubiquitin-related modifier 1", "gene_name": "URM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NXH9-1", "protein_name": "tRNA (guanine(26)-N(2))-dimethyltransferase", "gene_name": "TRMT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z4G4-1", "protein_name": "tRNA (guanine(10)-N(2))-methyltransferase TRMT11", "gene_name": "TRMT11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EY9-1", "protein_name": "tRNA-specific adenosine-34 deaminase regulatory subunit ADAT3", "gene_name": "ADAT3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXV9-1", "protein_name": "EKC/KEOPS complex subunit GON7", "gene_name": "GON7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UET6-1", "protein_name": "tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase", "gene_name": "FTSJ1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UJA5-1", "protein_name": "tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6", "gene_name": "TRMT6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96S44-1", "protein_name": "EKC/KEOPS complex subunit TP53RK", "gene_name": "TP53RK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H3H1-1", "protein_name": "tRNA dimethylallyltransferase", "gene_name": "TRIT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPF4-1", "protein_name": "tRNA N6-adenosine threonylcarbamoyltransferase", "gene_name": "OSGEP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07814-1", "protein_name": "Bifunctional glutamate/proline--tRNA ligase", "gene_name": "EPRS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3C4-1", "protein_name": "EKC/KEOPS complex subunit TPRKB", "gene_name": "TPRKB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5T6V5-1", "protein_name": "Queuosine 5'-phosphate N-glycosylase/hydrolase", "gene_name": "QNG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXR0-1", "protein_name": "Queuine tRNA-ribosyltransferase catalytic subunit 1", "gene_name": "QTRT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96FX7-1", "protein_name": "tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A", "gene_name": "TRMT61A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TBZ6-1", "protein_name": "tRNA methyltransferase 10 homolog A", "gene_name": "TRMT10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYL2-1", "protein_name": "Probable tRNA (uracil-O(2)-)-methyltransferase", "gene_name": "TRMT44", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBP6-1", "protein_name": "tRNA (guanine-N(7)-)-methyltransferase", "gene_name": "METTL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TEA1-1", "protein_name": "tRNA (cytosine(72)-C(5))-methyltransferase NSUN6", "gene_name": "NSUN6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NX74-1", "protein_name": "tRNA-dihydrouridine(20) synthase [NAD(P)+]-like", "gene_name": "DUS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57081-1", "protein_name": "tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit WDR4", "gene_name": "WDR4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6YHU6-1", "protein_name": "tRNA (32-2'-O)-methyltransferase regulator THADA", "gene_name": "THADA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9VEP1-1", "protein_name": "tRNA (cytidine(32)-2'-O)-methyltransferase", "gene_name": "Trm7-32", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9NUP7-1", "protein_name": "tRNA:m(4)X modification enzyme TRM13 homolog", "gene_name": "TRMT13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUB4-1", "protein_name": "tRNA-specific adenosine deaminase 1", "gene_name": "ADAT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z6V5-1", "protein_name": "tRNA-specific adenosine-34 deaminase catalytic subunit ADAT2", "gene_name": "ADAT2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "O14717", "url": "https://www.uniprot.org/uniprotkb/O14717" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.25404562", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 40 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Inosine modifications in human tRNAs are incorporated at the precursor tRNA level.", "journal": "Nucleic acids research", "date": "2015", "authors": "Torres AG, Pineyro D, Rodriguez-Escriba M, Camacho N, Reina O, Saint-Leger A, Filonava L, Batlle E, Ribas de Pouplana L", "reference": { "type": "PubMed", "id": "25916855", "url": "https://pubmed.ncbi.nlm.nih.gov/25916855" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O14717-1", "protein_name": "tRNA (cytosine(38)-C(5))-methyltransferase", "gene_name": "TRDMT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BT7-1", "protein_name": "tRNA (carboxymethyluridine(34)-5-O)-methyltransferase ALKBH8", "gene_name": "ALKBH8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UI30-1", "protein_name": "Multifunctional methyltransferase subunit TRM112-like protein", "gene_name": "TRMT112", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08J23-1", "protein_name": "RNA cytosine C(5)-methyltransferase NSUN2", "gene_name": "NSUN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZE2-1", "protein_name": "tRNA pseudouridine(38/39) synthase", "gene_name": "PUS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96PZ0-1", "protein_name": "Pseudouridylate synthase 7 homolog", "gene_name": "PUS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H974-1", "protein_name": "Queuine tRNA-ribosyltransferase accessory subunit 2", "gene_name": "QTRT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NWX6-1", "protein_name": "Probable tRNA(His) guanylyltransferase", "gene_name": "THG1L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5VV42-1", "protein_name": "Threonylcarbamoyladenosine tRNA methylthiotransferase", "gene_name": "CDKAL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14657-1", "protein_name": "EKC/KEOPS complex subunit LAGE3", "gene_name": "LAGE3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P272-1", "protein_name": "Probable tRNA methyltransferase 9B", "gene_name": "TRMT9B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2VPK5-1", "protein_name": "Cytoplasmic tRNA 2-thiolation protein 2", "gene_name": "CTU2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z7A3-1", "protein_name": "Cytoplasmic tRNA 2-thiolation protein 1", "gene_name": "CTU1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTM9-1", "protein_name": "Ubiquitin-related modifier 1", "gene_name": "URM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NXH9-1", "protein_name": "tRNA (guanine(26)-N(2))-dimethyltransferase", "gene_name": "TRMT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z4G4-1", "protein_name": "tRNA (guanine(10)-N(2))-methyltransferase TRMT11", "gene_name": "TRMT11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EY9-1", "protein_name": "tRNA-specific adenosine-34 deaminase regulatory subunit ADAT3", "gene_name": "ADAT3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXV9-1", "protein_name": "EKC/KEOPS complex subunit GON7", "gene_name": "GON7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UET6-1", "protein_name": "tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase", "gene_name": "FTSJ1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UJA5-1", "protein_name": "tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6", "gene_name": "TRMT6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96S44-1", "protein_name": "EKC/KEOPS complex subunit TP53RK", "gene_name": "TP53RK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H3H1-1", "protein_name": "tRNA dimethylallyltransferase", "gene_name": "TRIT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPF4-1", "protein_name": "tRNA N6-adenosine threonylcarbamoyltransferase", "gene_name": "OSGEP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07814-1", "protein_name": "Bifunctional glutamate/proline--tRNA ligase", "gene_name": "EPRS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3C4-1", "protein_name": "EKC/KEOPS complex subunit TPRKB", "gene_name": "TPRKB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5T6V5-1", "protein_name": "Queuosine 5'-phosphate N-glycosylase/hydrolase", "gene_name": "QNG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXR0-1", "protein_name": "Queuine tRNA-ribosyltransferase catalytic subunit 1", "gene_name": "QTRT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96FX7-1", "protein_name": "tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A", "gene_name": "TRMT61A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TBZ6-1", "protein_name": "tRNA methyltransferase 10 homolog A", "gene_name": "TRMT10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYL2-1", "protein_name": "Probable tRNA (uracil-O(2)-)-methyltransferase", "gene_name": "TRMT44", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBP6-1", "protein_name": "tRNA (guanine-N(7)-)-methyltransferase", "gene_name": "METTL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TEA1-1", "protein_name": "tRNA (cytosine(72)-C(5))-methyltransferase NSUN6", "gene_name": "NSUN6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NX74-1", "protein_name": "tRNA-dihydrouridine(20) synthase [NAD(P)+]-like", "gene_name": "DUS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57081-1", "protein_name": "tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit WDR4", "gene_name": "WDR4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6YHU6-1", "protein_name": "tRNA (32-2'-O)-methyltransferase regulator THADA", "gene_name": "THADA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NUP7-1", "protein_name": "tRNA:m(4)X modification enzyme TRM13 homolog", "gene_name": "TRMT13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUB4-1", "protein_name": "tRNA-specific adenosine deaminase 1", "gene_name": "ADAT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z6V5-1", "protein_name": "tRNA-specific adenosine-34 deaminase catalytic subunit ADAT2", "gene_name": "ADAT2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "O14717", "url": "https://www.uniprot.org/uniprotkb/O14717" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.25916855", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 38 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "NSUN6 is a human RNA methyltransferase that catalyzes formation of m5C72 in specific tRNAs.", "journal": "RNA (New York, N.Y.)", "date": "2015", "authors": "Haag S, Warda AS, Kretschmer J, Gunnigmann MA, Hobartner C, Bohnsack MT", "reference": { "type": "PubMed", "id": "26160102", "url": "https://pubmed.ncbi.nlm.nih.gov/26160102" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O14717-1", "protein_name": "tRNA (cytosine(38)-C(5))-methyltransferase", "gene_name": "TRDMT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BT7-1", "protein_name": "tRNA (carboxymethyluridine(34)-5-O)-methyltransferase ALKBH8", "gene_name": "ALKBH8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UI30-1", "protein_name": "Multifunctional methyltransferase subunit TRM112-like protein", "gene_name": "TRMT112", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08J23-1", "protein_name": "RNA cytosine C(5)-methyltransferase NSUN2", "gene_name": "NSUN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZE2-1", "protein_name": "tRNA pseudouridine(38/39) synthase", "gene_name": "PUS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96PZ0-1", "protein_name": "Pseudouridylate synthase 7 homolog", "gene_name": "PUS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H974-1", "protein_name": "Queuine tRNA-ribosyltransferase accessory subunit 2", "gene_name": "QTRT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NWX6-1", "protein_name": "Probable tRNA(His) guanylyltransferase", "gene_name": "THG1L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5VV42-1", "protein_name": "Threonylcarbamoyladenosine tRNA methylthiotransferase", "gene_name": "CDKAL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14657-1", "protein_name": "EKC/KEOPS complex subunit LAGE3", "gene_name": "LAGE3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P272-1", "protein_name": "Probable tRNA methyltransferase 9B", "gene_name": "TRMT9B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2VPK5-1", "protein_name": "Cytoplasmic tRNA 2-thiolation protein 2", "gene_name": "CTU2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z7A3-1", "protein_name": "Cytoplasmic tRNA 2-thiolation protein 1", "gene_name": "CTU1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTM9-1", "protein_name": "Ubiquitin-related modifier 1", "gene_name": "URM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NXH9-1", "protein_name": "tRNA (guanine(26)-N(2))-dimethyltransferase", "gene_name": "TRMT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z4G4-1", "protein_name": "tRNA (guanine(10)-N(2))-methyltransferase TRMT11", "gene_name": "TRMT11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EY9-1", "protein_name": "tRNA-specific adenosine-34 deaminase regulatory subunit ADAT3", "gene_name": "ADAT3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXV9-1", "protein_name": "EKC/KEOPS complex subunit GON7", "gene_name": "GON7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UET6-1", "protein_name": "tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase", "gene_name": "FTSJ1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UJA5-1", "protein_name": "tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6", "gene_name": "TRMT6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96S44-1", "protein_name": "EKC/KEOPS complex subunit TP53RK", "gene_name": "TP53RK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H3H1-1", "protein_name": "tRNA dimethylallyltransferase", "gene_name": "TRIT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPF4-1", "protein_name": "tRNA N6-adenosine threonylcarbamoyltransferase", "gene_name": "OSGEP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07814-1", "protein_name": "Bifunctional glutamate/proline--tRNA ligase", "gene_name": "EPRS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3C4-1", "protein_name": "EKC/KEOPS complex subunit TPRKB", "gene_name": "TPRKB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5T6V5-1", "protein_name": "Queuosine 5'-phosphate N-glycosylase/hydrolase", "gene_name": "QNG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXR0-1", "protein_name": "Queuine tRNA-ribosyltransferase catalytic subunit 1", "gene_name": "QTRT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96FX7-1", "protein_name": "tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A", "gene_name": "TRMT61A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TBZ6-1", "protein_name": "tRNA methyltransferase 10 homolog A", "gene_name": "TRMT10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYL2-1", "protein_name": "Probable tRNA (uracil-O(2)-)-methyltransferase", "gene_name": "TRMT44", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBP6-1", "protein_name": "tRNA (guanine-N(7)-)-methyltransferase", "gene_name": "METTL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TEA1-1", "protein_name": "tRNA (cytosine(72)-C(5))-methyltransferase NSUN6", "gene_name": "NSUN6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NX74-1", "protein_name": "tRNA-dihydrouridine(20) synthase [NAD(P)+]-like", "gene_name": "DUS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57081-1", "protein_name": "tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit WDR4", "gene_name": "WDR4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6YHU6-1", "protein_name": "tRNA (32-2'-O)-methyltransferase regulator THADA", "gene_name": "THADA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NUP7-1", "protein_name": "tRNA:m(4)X modification enzyme TRM13 homolog", "gene_name": "TRMT13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUB4-1", "protein_name": "tRNA-specific adenosine deaminase 1", "gene_name": "ADAT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z6V5-1", "protein_name": "tRNA-specific adenosine-34 deaminase catalytic subunit ADAT2", "gene_name": "ADAT2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "O14717", "url": "https://www.uniprot.org/uniprotkb/O14717" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 373, "end_pos": 373, "sequence_org": "C", "sequence_mut": "A", "comment": "Does not impair target RNA binding. Abolishes tRNA (cytosine-5-)-methyltransferase activity.", "evidence": [ { "database": "UniProtKB", "id": "Q8TEA1", "url": "https://www.uniprot.org/uniprotkb/Q8TEA1" }, { "database": "PubMed", "id": "28531330", "url": "https://pubmed.ncbi.nlm.nih.gov/28531330" }, { "database": "PubMed", "id": "26160102", "url": "https://pubmed.ncbi.nlm.nih.gov/26160102" } ], "uniprot_canonical_ac": "Q8TEA1-1" } ], "record_id": "pubmed.26160102", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 38 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Defects in tRNA Anticodon Loop 2'-O-Methylation Are Implicated in Nonsyndromic X-Linked Intellectual Disability due to Mutations in FTSJ1.", "journal": "Human mutation", "date": "2015", "authors": "Guy MP, Shaw M, Weiner CL, Hobson L, Stark Z, Rose K, Kalscheuer VM, Gecz J, Phizicky EM", "reference": { "type": "PubMed", "id": "26310293", "url": "https://pubmed.ncbi.nlm.nih.gov/26310293" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O14717-1", "protein_name": "tRNA (cytosine(38)-C(5))-methyltransferase", "gene_name": "TRDMT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BT7-1", "protein_name": "tRNA (carboxymethyluridine(34)-5-O)-methyltransferase ALKBH8", "gene_name": "ALKBH8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UI30-1", "protein_name": "Multifunctional methyltransferase subunit TRM112-like protein", "gene_name": "TRMT112", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08924-1", "protein_name": "tRNA (34-2'-O)-methyltransferase regulator RTT10", "gene_name": "RTT10", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38238-1", "protein_name": "tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase", "gene_name": "TRM7", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q08J23-1", "protein_name": "RNA cytosine C(5)-methyltransferase NSUN2", "gene_name": "NSUN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZE2-1", "protein_name": "tRNA pseudouridine(38/39) synthase", "gene_name": "PUS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96PZ0-1", "protein_name": "Pseudouridylate synthase 7 homolog", "gene_name": "PUS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H974-1", "protein_name": "Queuine tRNA-ribosyltransferase accessory subunit 2", "gene_name": "QTRT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NWX6-1", "protein_name": "Probable tRNA(His) guanylyltransferase", "gene_name": "THG1L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5VV42-1", "protein_name": "Threonylcarbamoyladenosine tRNA methylthiotransferase", "gene_name": "CDKAL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14657-1", "protein_name": "EKC/KEOPS complex subunit LAGE3", "gene_name": "LAGE3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P272-1", "protein_name": "Probable tRNA methyltransferase 9B", "gene_name": "TRMT9B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2VPK5-1", "protein_name": "Cytoplasmic tRNA 2-thiolation protein 2", "gene_name": "CTU2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z7A3-1", "protein_name": "Cytoplasmic tRNA 2-thiolation protein 1", "gene_name": "CTU1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTM9-1", "protein_name": "Ubiquitin-related modifier 1", "gene_name": "URM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NXH9-1", "protein_name": "tRNA (guanine(26)-N(2))-dimethyltransferase", "gene_name": "TRMT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z4G4-1", "protein_name": "tRNA (guanine(10)-N(2))-methyltransferase TRMT11", "gene_name": "TRMT11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q03496-1", "protein_name": "tRNA (32-2'-O)-methyltransferase regulator TRM732", "gene_name": "TRM732", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q96EY9-1", "protein_name": "tRNA-specific adenosine-34 deaminase regulatory subunit ADAT3", "gene_name": "ADAT3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXV9-1", "protein_name": "EKC/KEOPS complex subunit GON7", "gene_name": "GON7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UET6-1", "protein_name": "tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase", "gene_name": "FTSJ1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UJA5-1", "protein_name": "tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6", "gene_name": "TRMT6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96S44-1", "protein_name": "EKC/KEOPS complex subunit TP53RK", "gene_name": "TP53RK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H3H1-1", "protein_name": "tRNA dimethylallyltransferase", "gene_name": "TRIT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPF4-1", "protein_name": "tRNA N6-adenosine threonylcarbamoyltransferase", "gene_name": "OSGEP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07814-1", "protein_name": "Bifunctional glutamate/proline--tRNA ligase", "gene_name": "EPRS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3C4-1", "protein_name": "EKC/KEOPS complex subunit TPRKB", "gene_name": "TPRKB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5T6V5-1", "protein_name": "Queuosine 5'-phosphate N-glycosylase/hydrolase", "gene_name": "QNG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXR0-1", "protein_name": "Queuine tRNA-ribosyltransferase catalytic subunit 1", "gene_name": "QTRT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96FX7-1", "protein_name": "tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A", "gene_name": "TRMT61A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TBZ6-1", "protein_name": "tRNA methyltransferase 10 homolog A", "gene_name": "TRMT10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYL2-1", "protein_name": "Probable tRNA (uracil-O(2)-)-methyltransferase", "gene_name": "TRMT44", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBP6-1", "protein_name": "tRNA (guanine-N(7)-)-methyltransferase", "gene_name": "METTL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TEA1-1", "protein_name": "tRNA (cytosine(72)-C(5))-methyltransferase NSUN6", "gene_name": "NSUN6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NX74-1", "protein_name": "tRNA-dihydrouridine(20) synthase [NAD(P)+]-like", "gene_name": "DUS2", 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"o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A homozygous truncating mutation in PUS3 expands the role of tRNA modification in normal cognition.", "journal": "Human genetics", "date": "2016", "authors": "Shaheen R, Han L, Faqeih E, Ewida N, Alobeid E, Phizicky EM, Alkuraya FS", "reference": { "type": "PubMed", "id": "27055666", "url": "https://pubmed.ncbi.nlm.nih.gov/27055666" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O14717-1", "protein_name": "tRNA (cytosine(38)-C(5))-methyltransferase", "gene_name": "TRDMT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BT7-1", "protein_name": "tRNA (carboxymethyluridine(34)-5-O)-methyltransferase ALKBH8", "gene_name": "ALKBH8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UI30-1", "protein_name": "Multifunctional methyltransferase subunit TRM112-like protein", "gene_name": "TRMT112", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08J23-1", "protein_name": "RNA 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"protein_name": "EKC/KEOPS complex subunit GON7", "gene_name": "GON7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UET6-1", "protein_name": "tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase", "gene_name": "FTSJ1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UJA5-1", "protein_name": "tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6", "gene_name": "TRMT6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96S44-1", "protein_name": "EKC/KEOPS complex subunit TP53RK", "gene_name": "TP53RK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H3H1-1", "protein_name": "tRNA dimethylallyltransferase", "gene_name": "TRIT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPF4-1", "protein_name": "tRNA N6-adenosine threonylcarbamoyltransferase", "gene_name": "OSGEP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07814-1", "protein_name": "Bifunctional glutamate/proline--tRNA ligase", "gene_name": "EPRS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3C4-1", "protein_name": "EKC/KEOPS complex subunit TPRKB", "gene_name": "TPRKB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5T6V5-1", "protein_name": "Queuosine 5'-phosphate N-glycosylase/hydrolase", "gene_name": "QNG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXR0-1", "protein_name": "Queuine tRNA-ribosyltransferase catalytic subunit 1", "gene_name": "QTRT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96FX7-1", "protein_name": "tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A", "gene_name": "TRMT61A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TBZ6-1", "protein_name": "tRNA methyltransferase 10 homolog A", "gene_name": "TRMT10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYL2-1", "protein_name": "Probable tRNA (uracil-O(2)-)-methyltransferase", "gene_name": "TRMT44", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBP6-1", "protein_name": "tRNA (guanine-N(7)-)-methyltransferase", 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"Threonylcarbamoyladenosine tRNA methylthiotransferase", "gene_name": "CDKAL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14657-1", "protein_name": "EKC/KEOPS complex subunit LAGE3", "gene_name": "LAGE3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P272-1", "protein_name": "Probable tRNA methyltransferase 9B", "gene_name": "TRMT9B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2VPK5-1", "protein_name": "Cytoplasmic tRNA 2-thiolation protein 2", "gene_name": "CTU2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z7A3-1", "protein_name": "Cytoplasmic tRNA 2-thiolation protein 1", "gene_name": "CTU1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTM9-1", "protein_name": "Ubiquitin-related modifier 1", "gene_name": "URM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "G3X8U3-1", "protein_name": "Queuosine 5'-phosphate N-glycosylase/hydrolase", "gene_name": "QNG1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9NXH9-1", "protein_name": "tRNA (guanine(26)-N(2))-dimethyltransferase", "gene_name": "TRMT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z4G4-1", "protein_name": "tRNA (guanine(10)-N(2))-methyltransferase TRMT11", "gene_name": "TRMT11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EY9-1", "protein_name": "tRNA-specific adenosine-34 deaminase regulatory subunit ADAT3", "gene_name": "ADAT3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXV9-1", "protein_name": "EKC/KEOPS complex subunit GON7", "gene_name": "GON7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UET6-1", "protein_name": "tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase", "gene_name": "FTSJ1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UJA5-1", "protein_name": "tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6", "gene_name": "TRMT6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96S44-1", "protein_name": "EKC/KEOPS complex subunit TP53RK", "gene_name": "TP53RK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H3H1-1", "protein_name": "tRNA dimethylallyltransferase", "gene_name": "TRIT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPF4-1", "protein_name": "tRNA N6-adenosine threonylcarbamoyltransferase", "gene_name": "OSGEP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07814-1", "protein_name": "Bifunctional glutamate/proline--tRNA ligase", "gene_name": "EPRS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3C4-1", "protein_name": "EKC/KEOPS complex subunit TPRKB", "gene_name": "TPRKB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5T6V5-1", "protein_name": "Queuosine 5'-phosphate N-glycosylase/hydrolase", "gene_name": "QNG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXR0-1", "protein_name": "Queuine tRNA-ribosyltransferase catalytic subunit 1", "gene_name": "QTRT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96FX7-1", "protein_name": "tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A", "gene_name": "TRMT61A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TBZ6-1", "protein_name": "tRNA methyltransferase 10 homolog A", "gene_name": "TRMT10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYL2-1", "protein_name": "Probable tRNA (uracil-O(2)-)-methyltransferase", "gene_name": "TRMT44", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBP6-1", "protein_name": "tRNA (guanine-N(7)-)-methyltransferase", "gene_name": "METTL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TEA1-1", "protein_name": "tRNA (cytosine(72)-C(5))-methyltransferase NSUN6", "gene_name": "NSUN6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NX74-1", "protein_name": "tRNA-dihydrouridine(20) synthase [NAD(P)+]-like", "gene_name": "DUS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57081-1", "protein_name": "tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit WDR4", "gene_name": "WDR4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6YHU6-1", "protein_name": "tRNA (32-2'-O)-methyltransferase regulator THADA", "gene_name": "THADA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NUP7-1", "protein_name": "tRNA:m(4)X modification enzyme TRM13 homolog", "gene_name": "TRMT13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUB4-1", "protein_name": "tRNA-specific adenosine deaminase 1", "gene_name": "ADAT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z6V5-1", "protein_name": "tRNA-specific adenosine-34 deaminase catalytic subunit ADAT2", "gene_name": "ADAT2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "O14717", "url": "https://www.uniprot.org/uniprotkb/O14717" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.36610787", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 39 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { 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Mol. Genet.", "date": "1998", "authors": "Yoder JA, Bestor TH", "reference": { "type": "PubMed", "id": "9425235", "url": "https://pubmed.ncbi.nlm.nih.gov/9425235" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O14717-1", "protein_name": "tRNA (cytosine(38)-C(5))-methyltransferase", "gene_name": "TRDMT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O55055-1", "protein_name": "tRNA (cytosine(38)-C(5))-methyltransferase", "gene_name": "Trdmt1", "tax_name": "Mouse" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "O14717", "url": "https://www.uniprot.org/uniprotkb/O14717" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.9425235", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", 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"referenced_proteins": [ { "uniprot_canonical_ac": "O14717-1", "protein_name": "tRNA (cytosine(38)-C(5))-methyltransferase", "gene_name": "TRDMT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BT7-1", "protein_name": "tRNA (carboxymethyluridine(34)-5-O)-methyltransferase ALKBH8", "gene_name": "ALKBH8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UI30-1", "protein_name": "Multifunctional methyltransferase subunit TRM112-like protein", "gene_name": "TRMT112", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31115-1", "protein_name": "tRNA pseudouridine(38/39) synthase", "gene_name": "DEG1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q08J23-1", "protein_name": "RNA cytosine C(5)-methyltransferase NSUN2", "gene_name": "NSUN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZE2-1", "protein_name": "tRNA pseudouridine(38/39) synthase", "gene_name": "PUS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96PZ0-1", "protein_name": "Pseudouridylate synthase 7 homolog", "gene_name": "PUS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H974-1", "protein_name": "Queuine tRNA-ribosyltransferase accessory subunit 2", "gene_name": "QTRT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NWX6-1", "protein_name": "Probable tRNA(His) guanylyltransferase", "gene_name": "THG1L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5VV42-1", "protein_name": "Threonylcarbamoyladenosine tRNA methylthiotransferase", "gene_name": "CDKAL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14657-1", "protein_name": "EKC/KEOPS complex subunit LAGE3", "gene_name": "LAGE3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P272-1", "protein_name": "Probable tRNA methyltransferase 9B", "gene_name": "TRMT9B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2VPK5-1", "protein_name": "Cytoplasmic tRNA 2-thiolation protein 2", "gene_name": "CTU2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z7A3-1", "protein_name": "Cytoplasmic tRNA 2-thiolation protein 1", "gene_name": "CTU1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTM9-1", "protein_name": "Ubiquitin-related modifier 1", "gene_name": "URM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NXH9-1", "protein_name": "tRNA (guanine(26)-N(2))-dimethyltransferase", "gene_name": "TRMT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z4G4-1", "protein_name": "tRNA (guanine(10)-N(2))-methyltransferase TRMT11", "gene_name": "TRMT11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EY9-1", "protein_name": "tRNA-specific adenosine-34 deaminase regulatory subunit ADAT3", "gene_name": "ADAT3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXV9-1", "protein_name": "EKC/KEOPS complex subunit GON7", "gene_name": "GON7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UET6-1", "protein_name": "tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase", "gene_name": "FTSJ1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UJA5-1", "protein_name": "tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6", "gene_name": "TRMT6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96S44-1", "protein_name": "EKC/KEOPS complex subunit TP53RK", "gene_name": "TP53RK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H3H1-1", "protein_name": "tRNA dimethylallyltransferase", "gene_name": "TRIT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPF4-1", "protein_name": "tRNA N6-adenosine threonylcarbamoyltransferase", "gene_name": "OSGEP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07814-1", "protein_name": "Bifunctional glutamate/proline--tRNA ligase", "gene_name": "EPRS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3C4-1", "protein_name": "EKC/KEOPS complex subunit TPRKB", "gene_name": "TPRKB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5T6V5-1", "protein_name": "Queuosine 5'-phosphate N-glycosylase/hydrolase", "gene_name": "QNG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXR0-1", "protein_name": "Queuine tRNA-ribosyltransferase catalytic subunit 1", "gene_name": "QTRT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96FX7-1", "protein_name": "tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A", "gene_name": "TRMT61A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TBZ6-1", "protein_name": "tRNA methyltransferase 10 homolog A", "gene_name": "TRMT10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYL2-1", "protein_name": "Probable tRNA (uracil-O(2)-)-methyltransferase", "gene_name": "TRMT44", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBP6-1", "protein_name": "tRNA (guanine-N(7)-)-methyltransferase", "gene_name": "METTL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TEA1-1", "protein_name": "tRNA (cytosine(72)-C(5))-methyltransferase NSUN6", "gene_name": "NSUN6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NX74-1", "protein_name": "tRNA-dihydrouridine(20) synthase [NAD(P)+]-like", "gene_name": "DUS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57081-1", "protein_name": "tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit WDR4", "gene_name": "WDR4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6YHU6-1", "protein_name": "tRNA (32-2'-O)-methyltransferase regulator THADA", "gene_name": "THADA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NUP7-1", "protein_name": "tRNA:m(4)X modification enzyme TRM13 homolog", "gene_name": "TRMT13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUB4-1", "protein_name": "tRNA-specific adenosine deaminase 1", "gene_name": "ADAT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z6V5-1", "protein_name": "tRNA-specific adenosine-34 deaminase catalytic subunit ADAT2", "gene_name": "ADAT2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "O14717", "url": "https://www.uniprot.org/uniprotkb/O14717" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.9430663", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 39 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Dnmt2 is not required for de novo and maintenance methylation of viral DNA in embryonic stem cells.", "journal": "Nucleic Acids Res.", "date": "1998", "authors": "Okano M, Xie S, Li E", "reference": { "type": "PubMed", "id": "9592134", "url": "https://pubmed.ncbi.nlm.nih.gov/9592134" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O14717-1", "protein_name": "tRNA (cytosine(38)-C(5))-methyltransferase", "gene_name": "TRDMT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O55055-1", "protein_name": "tRNA (cytosine(38)-C(5))-methyltransferase", "gene_name": "Trdmt1", "tax_name": "Mouse" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "O14717", "url": "https://www.uniprot.org/uniprotkb/O14717" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.9592134", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Cloning and analysis of a novel human putative DNA methyltransferase.", "journal": "FEBS Lett.", "date": "1998", "authors": "Van den Wyngaert I, Sprengel J, Kass SU, Luyten WH", "reference": { "type": "PubMed", "id": "9599025", "url": "https://pubmed.ncbi.nlm.nih.gov/9599025" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O14717-1", "protein_name": "tRNA (cytosine(38)-C(5))-methyltransferase", "gene_name": "TRDMT1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "O14717", "url": "https://www.uniprot.org/uniprotkb/O14717" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.9599025", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The essential Gcd10p-Gcd14p nuclear complex is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA.", "journal": "Genes & development", "date": "1998", "authors": "Anderson J, Phan L, Cuesta R, Carlson BA, Pak M, Asano K, Bjork GR, Tamame M, Hinnebusch AG", "reference": { "type": "PubMed", "id": "9851972", "url": "https://pubmed.ncbi.nlm.nih.gov/9851972" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O14717-1", "protein_name": "tRNA (cytosine(38)-C(5))-methyltransferase", "gene_name": "TRDMT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BT7-1", "protein_name": "tRNA (carboxymethyluridine(34)-5-O)-methyltransferase ALKBH8", "gene_name": "ALKBH8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UI30-1", "protein_name": "Multifunctional methyltransferase subunit TRM112-like protein", "gene_name": "TRMT112", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33399-1", "protein_name": "La protein homolog", "gene_name": "LHP1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q08J23-1", "protein_name": "RNA cytosine C(5)-methyltransferase NSUN2", "gene_name": "NSUN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZE2-1", "protein_name": "tRNA pseudouridine(38/39) synthase", "gene_name": "PUS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96PZ0-1", "protein_name": "Pseudouridylate synthase 7 homolog", "gene_name": "PUS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H974-1", "protein_name": "Queuine tRNA-ribosyltransferase accessory subunit 2", "gene_name": "QTRT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NWX6-1", "protein_name": "Probable tRNA(His) guanylyltransferase", "gene_name": "THG1L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5VV42-1", "protein_name": "Threonylcarbamoyladenosine tRNA methylthiotransferase", "gene_name": "CDKAL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14657-1", "protein_name": "EKC/KEOPS complex subunit LAGE3", "gene_name": "LAGE3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P272-1", "protein_name": "Probable tRNA methyltransferase 9B", "gene_name": "TRMT9B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2VPK5-1", "protein_name": "Cytoplasmic tRNA 2-thiolation protein 2", "gene_name": "CTU2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z7A3-1", "protein_name": "Cytoplasmic tRNA 2-thiolation protein 1", "gene_name": "CTU1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTM9-1", "protein_name": "Ubiquitin-related modifier 1", "gene_name": "URM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NXH9-1", "protein_name": "tRNA (guanine(26)-N(2))-dimethyltransferase", "gene_name": "TRMT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z4G4-1", "protein_name": "tRNA (guanine(10)-N(2))-methyltransferase TRMT11", "gene_name": "TRMT11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EY9-1", "protein_name": "tRNA-specific adenosine-34 deaminase regulatory subunit ADAT3", "gene_name": "ADAT3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXV9-1", "protein_name": "EKC/KEOPS complex subunit GON7", "gene_name": "GON7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UET6-1", "protein_name": "tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase", "gene_name": "FTSJ1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UJA5-1", "protein_name": "tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6", "gene_name": "TRMT6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96S44-1", "protein_name": "EKC/KEOPS complex subunit TP53RK", "gene_name": "TP53RK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H3H1-1", "protein_name": "tRNA dimethylallyltransferase", "gene_name": "TRIT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPF4-1", "protein_name": "tRNA N6-adenosine threonylcarbamoyltransferase", "gene_name": "OSGEP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07814-1", "protein_name": "Bifunctional glutamate/proline--tRNA ligase", "gene_name": "EPRS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3C4-1", "protein_name": "EKC/KEOPS complex subunit TPRKB", "gene_name": "TPRKB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5T6V5-1", "protein_name": "Queuosine 5'-phosphate N-glycosylase/hydrolase", "gene_name": "QNG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXR0-1", "protein_name": "Queuine tRNA-ribosyltransferase catalytic subunit 1", "gene_name": "QTRT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96FX7-1", "protein_name": "tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A", "gene_name": "TRMT61A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TBZ6-1", "protein_name": "tRNA methyltransferase 10 homolog A", "gene_name": "TRMT10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYL2-1", "protein_name": "Probable tRNA (uracil-O(2)-)-methyltransferase", "gene_name": "TRMT44", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBP6-1", "protein_name": "tRNA (guanine-N(7)-)-methyltransferase", "gene_name": "METTL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TEA1-1", "protein_name": "tRNA (cytosine(72)-C(5))-methyltransferase NSUN6", "gene_name": "NSUN6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NX74-1", "protein_name": "tRNA-dihydrouridine(20) synthase [NAD(P)+]-like", "gene_name": "DUS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57081-1", "protein_name": "tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit WDR4", "gene_name": "WDR4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6YHU6-1", "protein_name": "tRNA (32-2'-O)-methyltransferase regulator THADA", "gene_name": "THADA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41814-1", "protein_name": "tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6", "gene_name": "GCD10", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P46959-1", "protein_name": "tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRM61", "gene_name": "GCD14", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q9NUP7-1", "protein_name": "tRNA:m(4)X modification enzyme TRM13 homolog", "gene_name": "TRMT13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUB4-1", "protein_name": "tRNA-specific adenosine deaminase 1", "gene_name": "ADAT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z6V5-1", "protein_name": "tRNA-specific adenosine-34 deaminase catalytic subunit ADAT2", "gene_name": "ADAT2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "O14717", "url": "https://www.uniprot.org/uniprotkb/O14717" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.9851972", "abstract": 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"type": "PubMed", "id": "21336277", "url": "https://pubmed.ncbi.nlm.nih.gov/21336277" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8NBV8-4", "protein_name": "Synaptotagmin-8", "gene_name": "SYT8", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q8NBV8", "url": "https://www.uniprot.org/uniprotkb/Q8NBV8" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.21336277", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Significance of SYT8 For the Detection, Prediction, and Treatment of Peritoneal Metastasis From Gastric Cancer.", "journal": "Annals of surgery", "date": "2018", "authors": "Kanda M, Shimizu D, Tanaka H, Tanaka C, Kobayashi D, Hayashi M, Iwata N, Niwa Y, Yamada S, Fujii T, Sugimoto H, Murotani K, Fujiwara M, Kodera Y", "reference": { "type": "PubMed", "id": "28026832", "url": "https://pubmed.ncbi.nlm.nih.gov/28026832" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8NBV8-4", "protein_name": "Synaptotagmin-8", "gene_name": "SYT8", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q8NBV8", "url": "https://www.uniprot.org/uniprotkb/Q8NBV8" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.28026832", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Molecular cloning, expression, and characterization of a novel class of synaptotagmin (Syt XIV) conserved from Drosophila to humans.", "journal": "J. Biochem.", "date": "2003", "authors": "Fukuda Mitsunori", "reference": { "type": "PubMed", "id": "12801916", "url": "https://pubmed.ncbi.nlm.nih.gov/12801916" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8NB59-1", "protein_name": "Synaptotagmin-14", "gene_name": "SYT14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q17RD7-1", "protein_name": "Synaptotagmin-16", "gene_name": "SYT16", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7XA06-1", "protein_name": "Synaptotagmin-3", "gene_name": "SYT3; SYTC", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q7TN83-1", "protein_name": "Synaptotagmin-16", "gene_name": "Syt16", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q7TN84-1", "protein_name": "Synaptotagmin-14", "gene_name": "Syt14", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9SKR2-1", "protein_name": "Synaptotagmin-1", "gene_name": "SYT1; SYTA", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q8NB59", "url": "https://www.uniprot.org/uniprotkb/Q8NB59" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.12801916", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": 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[] } ] }, { "title": "Synaptotagmin gene content of the sequenced genomes.", "journal": "BMC Genomics", "date": "2004", "authors": "Craxton Molly", "reference": { "type": "PubMed", "id": "15238157", "url": "https://pubmed.ncbi.nlm.nih.gov/15238157" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8NB59-1", "protein_name": "Synaptotagmin-14", "gene_name": "SYT14", "tax_name": "Human" }, { "uniprot_canonical_ac": "F1QCC9-1", "protein_name": "Synaptotagmin Vb", "gene_name": "syt5b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QQZ8-1", "protein_name": "Synaptotagmin-11b", "gene_name": "syt11b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1RD06-1", "protein_name": "Synaptotagmin-11a", "gene_name": "syt11a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "P21707-1", "protein_name": "Synaptotagmin-1", "gene_name": "Syt1", "tax_name": "Rat" }, { "uniprot_canonical_ac": "A0A8M9PPX1-1", "protein_name": "Synaptotagmin-1b isoform X1", 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"o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A probable new syndrome with the storage disease phenotype caused by the VPS33A gene mutation.", "journal": "Clinical dysmorphology", "date": "2017", "authors": "Dursun A, Yalnizoglu D, Gerdan OF, Yucel-Yilmaz D, Sagiroglu MS, Yuksel B, Gucer S, Sivri S, Ozgul RK", "reference": { "type": "PubMed", "id": "27547915", "url": "https://pubmed.ncbi.nlm.nih.gov/27547915" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q96AX1-1", "protein_name": "Vacuolar protein sorting-associated protein 33A", "gene_name": "VPS33A", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q96AX1", "url": "https://www.uniprot.org/uniprotkb/Q96AX1" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.27547915", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", 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"count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Mutation in VPS33A affects metabolism of glycosaminoglycans: a new type of mucopolysaccharidosis with severe systemic symptoms.", "journal": "Human molecular genetics", "date": "2017", "authors": "Kondo H, Maksimova N, Otomo T, Kato H, Imai A, Asano Y, Kobayashi K, Nojima S, Nakaya A, Hamada Y, Irahara K, Gurinova E, Sukhomyasova A, Nogovicina A, Savvina M, Yoshimori T, Ozono K, Sakai N", "reference": { "type": "PubMed", "id": "28013294", "url": "https://pubmed.ncbi.nlm.nih.gov/28013294" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q96AX1-1", "protein_name": "Vacuolar protein sorting-associated protein 33A", "gene_name": "VPS33A", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q96AX1", "url": "https://www.uniprot.org/uniprotkb/Q96AX1" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.28013294", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": 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promote cargo traffic to lysosomes.", "journal": "J. Cell Biol.", "date": "2017", "authors": "Marwaha R, Arya SB, Jagga D, Kaur H, Tuli A, Sharma M", "reference": { "type": "PubMed", "id": "28325809", "url": "https://pubmed.ncbi.nlm.nih.gov/28325809" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q96AX1-1", "protein_name": "Vacuolar protein sorting-associated protein 33A", "gene_name": "VPS33A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49754-1", "protein_name": "Vacuolar protein sorting-associated protein 41 homolog", "gene_name": "VPS41", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NVJ2-1", "protein_name": "ADP-ribosylation factor-like protein 8B", "gene_name": "ARL8B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BM9-1", "protein_name": "ADP-ribosylation factor-like protein 8A", "gene_name": "ARL8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H270-1", "protein_name": "Vacuolar protein sorting-associated protein 11 homolog", "gene_name": "VPS11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWE5-1", "protein_name": "Pleckstrin homology domain-containing family M member 2", "gene_name": "PLEKHM2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y4G2-1", "protein_name": "Pleckstrin homology domain-containing family M member 1", "gene_name": "PLEKHM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51149-1", "protein_name": "Ras-related protein Rab-7a", "gene_name": "RAB7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P253-1", "protein_name": "Vacuolar protein sorting-associated protein 18 homolog", "gene_name": "VPS18", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q96AX1", "url": "https://www.uniprot.org/uniprotkb/Q96AX1" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 75, "end_pos": 75, "sequence_org": "Q", "sequence_mut": "L", "comment": "Prevents GTP hydrolysis, hence remains active. No effect on lysosomal location. Alters lysosomes cellular distribution and motility. Increases interaction with VPS41. No effect on interaction with PLEKHM1. Does not affect interaction with RUFY3 and RUFY4.", "evidence": [ { "database": "UniProtKB", "id": "Q9NVJ2", "url": "https://www.uniprot.org/uniprotkb/Q9NVJ2" }, { "database": "PubMed", "id": "16537643", "url": "https://pubmed.ncbi.nlm.nih.gov/16537643" }, { "database": "PubMed", "id": "21802320", "url": "https://pubmed.ncbi.nlm.nih.gov/21802320" }, { "database": "PubMed", "id": "28325809", "url": "https://pubmed.ncbi.nlm.nih.gov/28325809" }, { "database": "PubMed", "id": "16650381", "url": "https://pubmed.ncbi.nlm.nih.gov/16650381" }, { "database": "PubMed", "id": "35314674", "url": "https://pubmed.ncbi.nlm.nih.gov/35314674" } ], "uniprot_canonical_ac": "Q9NVJ2-1" }, { "start_pos": 119, "end_pos": 123, "sequence_org": "RAWLR", "sequence_mut": "AAWLA", "comment": "Reduces interaction with ARL8B. No effect on interaction with RAB7A. Loss of interaction with ARL8B as well as late endosome and lysosome clustering; when associated with A-60.", "evidence": [ { "database": "UniProtKB", "id": "Q9Y4G2", "url": "https://www.uniprot.org/uniprotkb/Q9Y4G2" }, { "database": "PubMed", "id": "28325809", "url": "https://pubmed.ncbi.nlm.nih.gov/28325809" } ], "uniprot_canonical_ac": "Q9Y4G2-1" }, { "start_pos": 60, "end_pos": 60, "sequence_org": "H", "sequence_mut": "A", "comment": "Strongly reduces interaction with ARL8B. No effect on interaction with RAB7A. No effect on late endosome and lysosome clustering. Loss of interaction with ARL8B as well as late endosome and lysosome clustering; when associated with 119-A--A-123.", "evidence": [ { "database": "UniProtKB", "id": "Q9Y4G2", "url": "https://www.uniprot.org/uniprotkb/Q9Y4G2" }, { "database": "PubMed", "id": "28325809", "url": "https://pubmed.ncbi.nlm.nih.gov/28325809" } ], "uniprot_canonical_ac": "Q9Y4G2-1" }, { "start_pos": 63, "end_pos": 63, "sequence_org": "H", "sequence_mut": "A", "comment": "No effect on interaction with ARL8B. No effect on interaction with RAB7A.", "evidence": [ { "database": "UniProtKB", "id": "Q9Y4G2", "url": "https://www.uniprot.org/uniprotkb/Q9Y4G2" }, { "database": "PubMed", "id": "28325809", "url": "https://pubmed.ncbi.nlm.nih.gov/28325809" } ], "uniprot_canonical_ac": "Q9Y4G2-1" } ], "record_id": "pubmed.28325809", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 9 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": 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"o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Cis- and trans-acting gene regulation is associated with osteoarthritis.", "journal": "American journal of human genetics", "date": "2006", "authors": "Mahr S, Burmester GR, Hilke D, Gobel U, Grutzkau A, Haupl T, Hauschild M, Koczan D, Krenn V, Neidel J, Perka C, Radbruch A, Thiesen HJ, Muller B", "reference": { "type": "PubMed", "id": "16642435", "url": "https://pubmed.ncbi.nlm.nih.gov/16642435" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9BRN9-1", "protein_name": "TM2 domain-containing protein 3", "gene_name": "TM2D3", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9BRN9", "url": "https://www.uniprot.org/uniprotkb/Q9BRN9" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.16642435", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ 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"o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Rare Functional Variant in TM2D3 is Associated with Late-Onset Alzheimer's Disease.", "journal": "PLoS genetics", "date": "2016", "authors": "Jakobsdottir J, van der Lee SJ, Bis JC, Chouraki V, Li-Kroeger D, Yamamoto S, Grove ML, Naj A, Vronskaya M, Salazar JL, DeStefano AL, Brody JA, Smith AV, Amin N, Sims R, Ibrahim-Verbaas CA, Choi SH, Satizabal CL, Lopez OL, Beiser A, Ikram MA, Garcia ME, Hayward C, Varga TV, Ripatti S, Franks PW, Hallmans G, Rolandsson O, Jansson JH, Porteous DJ, Salomaa V, Eiriksdottir G, Rice KM, Bellen HJ, Levy D, Uitterlinden AG, Emilsson V, Rotter JI, Aspelund T, O'Donnell CJ, Fitzpatrick AL, Launer LJ, Hofman A, Wang LS, Williams J, Schellenberg GD, Boerwinkle E, Psaty BM, Seshadri S, Shulman JM, Gudnason V, van Duijn CM", "reference": { "type": "PubMed", "id": "27764101", "url": "https://pubmed.ncbi.nlm.nih.gov/27764101" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9BRN9-1", "protein_name": "TM2 domain-containing protein 3", "gene_name": "TM2D3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9U4H5-1", "protein_name": "TM2 domain-containing protein almondex", "gene_name": "amx", "tax_name": "Fruit fly" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "TM2D3 rs675436 or FGFR2 rs755793 polymorphisms and susceptibility to Epstein-Barr virus-associated tumors in Chinese Han population.", "journal": "Journal of medical virology", "date": "2018", "authors": "Zhang Q, Liu W, Yang Y, Zhao Z, Luo B", "reference": { "type": "PubMed", "id": "29446487", "url": "https://pubmed.ncbi.nlm.nih.gov/29446487" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9BRN9-1", "protein_name": "TM2 domain-containing protein 3", "gene_name": "TM2D3", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9BRN9", "url": "https://www.uniprot.org/uniprotkb/Q9BRN9" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.29446487", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", 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Christine, Cogne Benjamin, Besnard Thomas, Lorino Elsa, Douglas Jessica, Bodamer Olaf, Vetro Annalisa, Guerrini Renzo, Balestrini Simona, Conti Valerio, Siri Laura, Chevrollier Arnaud, Bris C\u00e9line, Colin Estelle, Procaccio Vincent, Prunier-Mirebeau Delphine, Lenaers Guy, Khiati Salim, Nizon Mathilde, Baris Olivier R", "reference": { "type": "PubMed", "id": "40449487", "url": "https://pubmed.ncbi.nlm.nih.gov/40449487" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9BRN9-1", "protein_name": "TM2 domain-containing protein 3", "gene_name": "TM2D3", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9BRN9", "url": "https://www.uniprot.org/uniprotkb/Q9BRN9" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.40449487", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], 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"uniprot_canonical_ac": "P49327-1", "protein_name": "Fatty acid synthase", "gene_name": "FASN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z3K3-1", "protein_name": "Pogo transposable element with ZNF domain", "gene_name": "POGZ", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75190-1", "protein_name": "DnaJ homolog subfamily B member 6", "gene_name": "DNAJB6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14137-1", "protein_name": "Ribosome biogenesis protein BOP1", "gene_name": "BOP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H8V3-1", "protein_name": "Protein ECT2", "gene_name": "ECT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15382-1", "protein_name": "GTP-binding protein Rheb", "gene_name": "RHEB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HBU6-1", "protein_name": "Ethanolamine kinase 1", "gene_name": "ETNK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13454-1", "protein_name": "Dolichyl-diphosphooligosaccharide--protein 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Al-Gazali L, Thomas S, Davis EE, Bielas SL, Hill KJ, Iannicelli M, Brancati F, Gabriel SB, Russ C, Logan CV, Sharif SM, Bennett CP, Abe M, Hildebrandt F, Diplas BH, Attie-Bitach T, Katsanis N, Rajab A, Koul R, Sztriha L, Waters ER, Ferro-Novick S, Woods CG, Johnson CA, Valente EM, Zaki MS, Gleeson JG", "reference": { "type": "PubMed", "id": "22282472", "url": "https://pubmed.ncbi.nlm.nih.gov/22282472" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9NPI0-1", "protein_name": "Transmembrane protein 138", "gene_name": "TMEM138", "tax_name": "Human" }, { "uniprot_canonical_ac": "E7EYQ9-1", "protein_name": "Transmembrane protein 216", "gene_name": "tmem216", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7FDE0-1", "protein_name": "Transmembrane protein 138", "gene_name": "tmem138", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q9P0N5-1", "protein_name": "Transmembrane protein 216", "gene_name": "TMEM216", "tax_name": "Human" } ], "species": 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"count": 0 } ], "sort_fields": [] } ] }, { "title": "Characterization of an Emirati TMEM138 mutation leading to Joubert syndrome.", "journal": "Pediatrics international : official journal of the Japan Pediatric Society", "date": "2017", "authors": "Bizzari S, Hamzeh AR, Nair P, Mohamed M, Bastaki F", "reference": { "type": "PubMed", "id": "28102635", "url": "https://pubmed.ncbi.nlm.nih.gov/28102635" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9NPI0-1", "protein_name": "Transmembrane protein 138", "gene_name": "TMEM138", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9NPI0", "url": "https://www.uniprot.org/uniprotkb/Q9NPI0" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.28102635", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], 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"35394880", "url": "https://pubmed.ncbi.nlm.nih.gov/35394880" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9NPI0-1", "protein_name": "Transmembrane protein 138", "gene_name": "TMEM138", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9NPI0", "url": "https://www.uniprot.org/uniprotkb/Q9NPI0" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.35394880", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": 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Biol.", "date": "1999", "authors": "Scott IC, Blitz IL, Pappano WN, Imamura Y, Clark TG, Steiglitz BM, Thomas CL, Maas SA, Takahara K, Cho KW, Greenspan DS", "reference": { "type": "PubMed", "id": "10479448", "url": "https://pubmed.ncbi.nlm.nih.gov/10479448" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O43897-1", "protein_name": "Tolloid-like protein 1", "gene_name": "TLL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02452-1", "protein_name": "Collagen alpha-1(I) chain", "gene_name": "COL1A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q17RW2-1", "protein_name": "Collagen alpha-1(XXIV) chain", "gene_name": "COL24A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9WVM6-1", "protein_name": "Tolloid-like protein 2", "gene_name": "Tll2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9UKZ9-1", "protein_name": "Procollagen C-endopeptidase enhancer 2", "gene_name": "PCOLCE2", "tax_name": "Human" }, { "uniprot_canonical_ac": 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"gene_name": "COL5A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01955-1", "protein_name": "Collagen alpha-3(IV) chain", "gene_name": "COL4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z4N8-1", "protein_name": "Prolyl 4-hydroxylase subunit alpha-3", "gene_name": "P4HA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75718-1", "protein_name": "Cartilage-associated protein", "gene_name": "CRTAP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IVL6-1", "protein_name": "Prolyl 3-hydroxylase 3", "gene_name": "P3H3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6L7-1", "protein_name": "Tolloid-like protein 2", "gene_name": "TLL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02461-1", "protein_name": "Collagen alpha-1(III) chain", "gene_name": "COL3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07092-1", "protein_name": "Collagen alpha-1(XVI) chain", "gene_name": "COL16A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13942-1", "protein_name": "Collagen alpha-2(XI) chain", "gene_name": "COL11A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29400-1", "protein_name": "Collagen alpha-5(IV) chain", "gene_name": "COL4A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14055-1", "protein_name": "Collagen alpha-2(IX) chain", "gene_name": "COL9A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99715-1", "protein_name": "Collagen alpha-1(XII) chain", "gene_name": "COL12A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96P44-1", "protein_name": "Collagen alpha-1(XXI) chain", "gene_name": "COL21A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "A8TX70-1", "protein_name": "Collagen alpha-5(VI) chain", "gene_name": "COL6A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2UY09-1", "protein_name": "Collagen alpha-1(XXVIII) chain", "gene_name": "COL28A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05997-1", "protein_name": "Collagen alpha-2(V) chain", "gene_name": "COL5A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFW1-1", "protein_name": "Collagen alpha-1(XXII) chain", "gene_name": "COL22A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "A6NMZ7-1", "protein_name": "Collagen alpha-6(VI) chain", "gene_name": "COL6A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12111-1", "protein_name": "Collagen alpha-3(VI) chain", "gene_name": "COL6A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5TAT6-1", "protein_name": "Collagen alpha-1(XIII) chain", "gene_name": "COL13A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08123-1", "protein_name": "Collagen alpha-2(I) chain", "gene_name": "COL1A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P218-1", "protein_name": "Collagen alpha-1(XX) chain", "gene_name": "COL20A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12109-1", "protein_name": "Collagen alpha-1(VI) chain", "gene_name": "COL6A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02458-2", "protein_name": "Collagen 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"uniprot_canonical_ac": "Q8NBJ5-1", "protein_name": "Procollagen galactosyltransferase 1", "gene_name": "COLGALT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYK4-1", "protein_name": "Procollagen galactosyltransferase 2", "gene_name": "COLGALT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00469-1", "protein_name": "Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2", "gene_name": "PLOD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02809-1", "protein_name": "Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1", "gene_name": "PLOD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13674-1", "protein_name": "Prolyl 4-hydroxylase subunit alpha-1", "gene_name": "P4HA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50454-1", "protein_name": "Serpin H1", "gene_name": "SERPINH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15072-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 3", "gene_name": "ADAMTS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WXS8-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 14", "gene_name": "ADAMTS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60568-1", "protein_name": "Multifunctional procollagen lysine hydroxylase and glycosyltransferase LH3", "gene_name": "PLOD3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39060-3", "protein_name": "Collagen alpha-1(XVIII) chain", "gene_name": "COL18A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15113-1", "protein_name": "Procollagen C-endopeptidase enhancer 1", "gene_name": "PCOLCE", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "O43897", "url": "https://www.uniprot.org/uniprotkb/O43897" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.10479448", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], 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Biol. Chem.", "date": "2000", "authors": "Scott I C, Imamura Y, Pappano W N, Troedel J M, Recklies A D, Roughley P J, Greenspan D S", "reference": { "type": "PubMed", "id": "10896944", "url": "https://pubmed.ncbi.nlm.nih.gov/10896944" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O43897-1", "protein_name": "Tolloid-like protein 1", "gene_name": "TLL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q62381-1", "protein_name": "Tolloid-like protein 1", "gene_name": "Tll1", "tax_name": "Mouse" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "O43897", "url": "https://www.uniprot.org/uniprotkb/O43897" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.10896944", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", 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No effect on glycosyltransferase activity.", "evidence": [ { "database": "UniProtKB", "id": "O60568", "url": "https://www.uniprot.org/uniprotkb/O60568" }, { "database": "PubMed", "id": "18298658", "url": "https://pubmed.ncbi.nlm.nih.gov/18298658" }, { "database": "PubMed", "id": "10934207", "url": "https://pubmed.ncbi.nlm.nih.gov/10934207" } ], "uniprot_canonical_ac": "O60568-1" } ], "record_id": "pubmed.10934207", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 67 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": 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}, { "uniprot_canonical_ac": "A8TX70-1", "protein_name": "Collagen alpha-5(VI) chain", "gene_name": "COL6A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2UY09-1", "protein_name": "Collagen alpha-1(XXVIII) chain", "gene_name": "COL28A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05997-1", "protein_name": "Collagen alpha-2(V) chain", "gene_name": "COL5A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFW1-1", "protein_name": "Collagen alpha-1(XXII) chain", "gene_name": "COL22A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "A6NMZ7-1", "protein_name": "Collagen alpha-6(VI) chain", "gene_name": "COL6A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12111-1", "protein_name": "Collagen alpha-3(VI) chain", "gene_name": "COL6A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5TAT6-1", "protein_name": "Collagen alpha-1(XIII) chain", "gene_name": "COL13A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08123-1", "protein_name": "Collagen alpha-2(I) chain", "gene_name": "COL1A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P218-1", "protein_name": "Collagen alpha-1(XX) chain", "gene_name": "COL20A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12109-1", "protein_name": "Collagen alpha-1(VI) chain", "gene_name": "COL6A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02458-2", "protein_name": "Collagen alpha-1(II) chain", "gene_name": "COL2A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02388-1", "protein_name": "Collagen alpha-1(VII) chain", "gene_name": "COL7A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14050-1", "protein_name": "Collagen alpha-3(IX) chain", "gene_name": "COL9A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UMD9-1", "protein_name": "Collagen alpha-1(XVII) chain", "gene_name": "COL17A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXS0-1", "protein_name": "Collagen alpha-1(XXV) chain", "gene_name": "COL25A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23284-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase B", "gene_name": "PPIB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q03692-1", "protein_name": "Collagen alpha-1(X) chain", "gene_name": "COL10A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13497-1", "protein_name": "Bone morphogenetic protein 1", "gene_name": "BMP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NBJ5-1", "protein_name": "Procollagen galactosyltransferase 1", "gene_name": "COLGALT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYK4-1", "protein_name": "Procollagen galactosyltransferase 2", "gene_name": "COLGALT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00469-1", "protein_name": "Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2", "gene_name": "PLOD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02809-1", "protein_name": "Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1", "gene_name": "PLOD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13674-1", "protein_name": "Prolyl 4-hydroxylase subunit alpha-1", "gene_name": "P4HA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50454-1", "protein_name": "Serpin H1", "gene_name": "SERPINH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15072-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 3", "gene_name": "ADAMTS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WXS8-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 14", "gene_name": "ADAMTS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60568-1", "protein_name": "Multifunctional procollagen lysine hydroxylase and glycosyltransferase LH3", "gene_name": "PLOD3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39060-3", "protein_name": "Collagen alpha-1(XVIII) chain", "gene_name": "COL18A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15113-1", "protein_name": "Procollagen C-endopeptidase enhancer 1", "gene_name": "PCOLCE", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "O43897", "url": "https://www.uniprot.org/uniprotkb/O43897" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.12473679", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 67 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The third activity for lysyl hydroxylase 3: galactosylation of hydroxylysyl residues in collagens in vitro.", "journal": "Matrix biology : journal of the International Society for Matrix Biology", "date": "2002", "authors": "Wang C, Luosujarvi H, Heikkinen J, Risteli M, Uitto L, Myllyla R", "reference": { "type": "PubMed", "id": "12475640", "url": "https://pubmed.ncbi.nlm.nih.gov/12475640" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O43897-1", "protein_name": "Tolloid-like protein 1", "gene_name": "TLL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02452-1", "protein_name": "Collagen alpha-1(I) chain", "gene_name": "COL1A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q17RW2-1", "protein_name": "Collagen alpha-1(XXIV) chain", "gene_name": "COL24A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKZ9-1", "protein_name": "Procollagen C-endopeptidase enhancer 2", "gene_name": "PCOLCE2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05707-1", "protein_name": "Collagen alpha-1(XIV) chain", "gene_name": "COL14A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39059-1", "protein_name": "Collagen alpha-1(XV) chain", "gene_name": "COL15A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53420-1", "protein_name": "Collagen alpha-4(IV) chain", "gene_name": "COL4A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IZC6-1", "protein_name": "Collagen alpha-1(XXVII) chain", "gene_name": "COL27A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86Y22-1", "protein_name": "Collagen alpha-1(XXIII) chain", "gene_name": "COL23A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07237-1", "protein_name": "Protein disulfide-isomerase", "gene_name": "P4HB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12107-1", "protein_name": "Collagen alpha-1(XI) chain", "gene_name": "COL11A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A83-1", "protein_name": "Collagen alpha-1(XXVI) chain", "gene_name": "COL26A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14993-1", "protein_name": "Collagen alpha-1(XIX) chain", "gene_name": "COL19A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q32P28-1", "protein_name": "Prolyl 3-hydroxylase 1", "gene_name": "P3H1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IVL5-1", "protein_name": "Prolyl 3-hydroxylase 2", "gene_name": "P3H2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15460-1", "protein_name": "Prolyl 4-hydroxylase subunit alpha-2", "gene_name": "P4HA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95450-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 2", "gene_name": "ADAMTS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12110-1", "protein_name": "Collagen alpha-2(VI) chain", "gene_name": "COL6A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14031-1", "protein_name": "Collagen alpha-6(IV) chain", "gene_name": "COL4A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20908-1", "protein_name": "Collagen alpha-1(V) chain", "gene_name": "COL5A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02462-1", "protein_name": "Collagen alpha-1(IV) chain", "gene_name": "COL4A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27658-1", "protein_name": "Collagen alpha-1(VIII) chain", "gene_name": "COL8A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08572-1", "protein_name": "Collagen alpha-2(IV) chain", "gene_name": "COL4A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25067-1", "protein_name": "Collagen alpha-2(VIII) chain", "gene_name": "COL8A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20849-1", "protein_name": "Collagen alpha-1(IX) chain", "gene_name": "COL9A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25940-1", "protein_name": "Collagen alpha-3(V) chain", "gene_name": "COL5A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01955-1", "protein_name": "Collagen alpha-3(IV) chain", "gene_name": "COL4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z4N8-1", "protein_name": "Prolyl 4-hydroxylase subunit alpha-3", "gene_name": "P4HA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75718-1", "protein_name": "Cartilage-associated protein", "gene_name": "CRTAP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IVL6-1", "protein_name": "Prolyl 3-hydroxylase 3", "gene_name": "P3H3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6L7-1", "protein_name": "Tolloid-like protein 2", "gene_name": "TLL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02461-1", "protein_name": "Collagen alpha-1(III) chain", "gene_name": "COL3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07092-1", "protein_name": "Collagen alpha-1(XVI) chain", "gene_name": "COL16A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13942-1", "protein_name": "Collagen alpha-2(XI) chain", "gene_name": "COL11A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29400-1", "protein_name": "Collagen alpha-5(IV) chain", "gene_name": "COL4A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14055-1", "protein_name": "Collagen alpha-2(IX) chain", "gene_name": "COL9A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99715-1", "protein_name": "Collagen alpha-1(XII) chain", "gene_name": "COL12A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96P44-1", "protein_name": "Collagen alpha-1(XXI) chain", "gene_name": "COL21A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "A8TX70-1", "protein_name": "Collagen alpha-5(VI) chain", "gene_name": "COL6A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2UY09-1", "protein_name": "Collagen alpha-1(XXVIII) chain", "gene_name": "COL28A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05997-1", "protein_name": "Collagen alpha-2(V) chain", "gene_name": "COL5A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFW1-1", "protein_name": "Collagen alpha-1(XXII) chain", "gene_name": "COL22A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "A6NMZ7-1", "protein_name": "Collagen alpha-6(VI) chain", "gene_name": "COL6A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12111-1", "protein_name": "Collagen alpha-3(VI) chain", "gene_name": "COL6A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5TAT6-1", "protein_name": "Collagen alpha-1(XIII) chain", "gene_name": "COL13A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08123-1", "protein_name": "Collagen alpha-2(I) chain", "gene_name": "COL1A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P218-1", "protein_name": "Collagen alpha-1(XX) chain", "gene_name": "COL20A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12109-1", "protein_name": "Collagen alpha-1(VI) chain", "gene_name": "COL6A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02458-2", "protein_name": "Collagen alpha-1(II) chain", "gene_name": "COL2A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02388-1", "protein_name": "Collagen alpha-1(VII) chain", "gene_name": "COL7A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14050-1", "protein_name": "Collagen alpha-3(IX) chain", "gene_name": "COL9A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UMD9-1", "protein_name": "Collagen alpha-1(XVII) chain", "gene_name": "COL17A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXS0-1", "protein_name": "Collagen alpha-1(XXV) chain", "gene_name": "COL25A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23284-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase B", "gene_name": "PPIB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q03692-1", "protein_name": "Collagen alpha-1(X) chain", "gene_name": "COL10A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13497-1", "protein_name": "Bone morphogenetic protein 1", "gene_name": "BMP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NBJ5-1", "protein_name": "Procollagen galactosyltransferase 1", "gene_name": "COLGALT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYK4-1", "protein_name": "Procollagen galactosyltransferase 2", "gene_name": "COLGALT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00469-1", "protein_name": "Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2", "gene_name": "PLOD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02809-1", "protein_name": "Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1", "gene_name": "PLOD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13674-1", "protein_name": "Prolyl 4-hydroxylase subunit alpha-1", "gene_name": "P4HA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50454-1", "protein_name": "Serpin H1", "gene_name": "SERPINH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15072-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 3", "gene_name": "ADAMTS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WXS8-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 14", "gene_name": "ADAMTS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60568-1", "protein_name": "Multifunctional procollagen lysine hydroxylase and glycosyltransferase LH3", "gene_name": "PLOD3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39060-3", "protein_name": "Collagen alpha-1(XVIII) chain", "gene_name": "COL18A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15113-1", "protein_name": "Procollagen C-endopeptidase enhancer 1", "gene_name": "PCOLCE", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "O43897", "url": "https://www.uniprot.org/uniprotkb/O43897" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 144, "end_pos": 144, "sequence_org": "C", "sequence_mut": "I", "comment": "Strongly reduced glucosyltransferase activity. Strongly reduced galactosyltransferase activity.", "evidence": [ { "database": "UniProtKB", "id": "O60568", "url": "https://www.uniprot.org/uniprotkb/O60568" }, { "database": "PubMed", "id": "11896059", "url": "https://pubmed.ncbi.nlm.nih.gov/11896059" }, { "database": "PubMed", "id": "12475640", "url": "https://pubmed.ncbi.nlm.nih.gov/12475640" } ], "uniprot_canonical_ac": "O60568-1" }, { "start_pos": 187, "end_pos": 189, "sequence_org": "DDD", "sequence_mut": "ADA", "comment": "Nearly abolishes glucosyltransferase activity. Nearly abolishes galactosyltransferase activity.", "evidence": [ { "database": "UniProtKB", "id": "O60568", "url": "https://www.uniprot.org/uniprotkb/O60568" }, { "database": "PubMed", "id": "11896059", "url": "https://pubmed.ncbi.nlm.nih.gov/11896059" }, { "database": "PubMed", "id": "12475640", "url": "https://pubmed.ncbi.nlm.nih.gov/12475640" } ], "uniprot_canonical_ac": "O60568-1" }, { "start_pos": 187, "end_pos": 191, "sequence_org": "DDDDD", "sequence_mut": "ADAAA", "comment": "Loss of glucosyltransferase activity. Loss of galactosyltransferase activity.", "evidence": [ { "database": "UniProtKB", "id": "O60568", "url": "https://www.uniprot.org/uniprotkb/O60568" }, { "database": "PubMed", "id": "18298658", "url": "https://pubmed.ncbi.nlm.nih.gov/18298658" }, { "database": "PubMed", "id": "11896059", "url": "https://pubmed.ncbi.nlm.nih.gov/11896059" }, { "database": "PubMed", "id": "12475640", "url": "https://pubmed.ncbi.nlm.nih.gov/12475640" } ], "uniprot_canonical_ac": "O60568-1" } ], "record_id": "pubmed.12475640", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 67 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Transforming growth factor-beta induces secretion of activated ADAMTS-2. A procollagen III N-proteinase.", "journal": "The Journal of biological chemistry", "date": "2003", "authors": "Wang WM, Lee S, Steiglitz BM, Scott IC, Lebares CC, Allen ML, Brenner MC, Takahara K, Greenspan DS", "reference": { "type": "PubMed", "id": "12646579", "url": "https://pubmed.ncbi.nlm.nih.gov/12646579" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O43897-1", "protein_name": "Tolloid-like protein 1", "gene_name": "TLL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02452-1", "protein_name": "Collagen alpha-1(I) chain", "gene_name": "COL1A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q17RW2-1", "protein_name": "Collagen alpha-1(XXIV) chain", "gene_name": "COL24A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKZ9-1", "protein_name": "Procollagen C-endopeptidase enhancer 2", "gene_name": "PCOLCE2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05707-1", "protein_name": "Collagen alpha-1(XIV) chain", "gene_name": 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"protein_name": "Collagen alpha-1(XIX) chain", "gene_name": "COL19A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q32P28-1", "protein_name": "Prolyl 3-hydroxylase 1", "gene_name": "P3H1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IVL5-1", "protein_name": "Prolyl 3-hydroxylase 2", "gene_name": "P3H2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15460-1", "protein_name": "Prolyl 4-hydroxylase subunit alpha-2", "gene_name": "P4HA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95450-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 2", "gene_name": "ADAMTS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12110-1", "protein_name": "Collagen alpha-2(VI) chain", "gene_name": "COL6A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14031-1", "protein_name": "Collagen alpha-6(IV) chain", "gene_name": "COL4A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20908-1", "protein_name": "Collagen alpha-1(V) chain", "gene_name": "COL5A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02462-1", "protein_name": "Collagen alpha-1(IV) chain", "gene_name": "COL4A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27658-1", "protein_name": "Collagen alpha-1(VIII) chain", "gene_name": "COL8A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08572-1", "protein_name": "Collagen alpha-2(IV) chain", "gene_name": "COL4A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25067-1", "protein_name": "Collagen alpha-2(VIII) chain", "gene_name": "COL8A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20849-1", "protein_name": "Collagen alpha-1(IX) chain", "gene_name": "COL9A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25940-1", "protein_name": "Collagen alpha-3(V) chain", "gene_name": "COL5A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01955-1", "protein_name": "Collagen alpha-3(IV) chain", "gene_name": "COL4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z4N8-1", "protein_name": "Prolyl 4-hydroxylase subunit alpha-3", "gene_name": "P4HA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75718-1", "protein_name": "Cartilage-associated protein", "gene_name": "CRTAP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IVL6-1", "protein_name": "Prolyl 3-hydroxylase 3", "gene_name": "P3H3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6L7-1", "protein_name": "Tolloid-like protein 2", "gene_name": "TLL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02461-1", "protein_name": "Collagen alpha-1(III) chain", "gene_name": "COL3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07092-1", "protein_name": "Collagen alpha-1(XVI) chain", "gene_name": "COL16A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13942-1", "protein_name": "Collagen alpha-2(XI) chain", "gene_name": "COL11A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29400-1", "protein_name": "Collagen alpha-5(IV) chain", "gene_name": "COL4A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14055-1", "protein_name": "Collagen alpha-2(IX) chain", "gene_name": "COL9A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99715-1", "protein_name": "Collagen alpha-1(XII) chain", "gene_name": "COL12A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96P44-1", "protein_name": "Collagen alpha-1(XXI) chain", "gene_name": "COL21A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "A8TX70-1", "protein_name": "Collagen alpha-5(VI) chain", "gene_name": "COL6A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2UY09-1", "protein_name": "Collagen alpha-1(XXVIII) chain", "gene_name": "COL28A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05997-1", "protein_name": "Collagen alpha-2(V) chain", "gene_name": "COL5A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFW1-1", "protein_name": "Collagen alpha-1(XXII) chain", "gene_name": "COL22A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "A6NMZ7-1", "protein_name": "Collagen alpha-6(VI) chain", "gene_name": "COL6A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12111-1", "protein_name": "Collagen alpha-3(VI) chain", "gene_name": "COL6A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5TAT6-1", "protein_name": "Collagen alpha-1(XIII) chain", "gene_name": "COL13A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08123-1", "protein_name": "Collagen alpha-2(I) chain", "gene_name": "COL1A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P218-1", "protein_name": "Collagen alpha-1(XX) chain", "gene_name": "COL20A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12109-1", "protein_name": "Collagen alpha-1(VI) chain", "gene_name": "COL6A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02458-2", "protein_name": "Collagen alpha-1(II) chain", "gene_name": "COL2A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02388-1", "protein_name": "Collagen alpha-1(VII) chain", "gene_name": "COL7A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14050-1", "protein_name": "Collagen alpha-3(IX) chain", "gene_name": "COL9A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UMD9-1", "protein_name": "Collagen alpha-1(XVII) chain", "gene_name": "COL17A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXS0-1", "protein_name": "Collagen alpha-1(XXV) chain", "gene_name": "COL25A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23284-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase B", "gene_name": "PPIB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q03692-1", "protein_name": "Collagen alpha-1(X) chain", "gene_name": "COL10A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13497-1", "protein_name": "Bone morphogenetic protein 1", "gene_name": "BMP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NBJ5-1", "protein_name": "Procollagen galactosyltransferase 1", "gene_name": "COLGALT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYK4-1", "protein_name": "Procollagen galactosyltransferase 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"protein_name": "Multifunctional procollagen lysine hydroxylase and glycosyltransferase LH3", "gene_name": "PLOD3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39060-3", "protein_name": "Collagen alpha-1(XVIII) chain", "gene_name": "COL18A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15113-1", "protein_name": "Procollagen C-endopeptidase enhancer 1", "gene_name": "PCOLCE", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "O43897", "url": "https://www.uniprot.org/uniprotkb/O43897" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.12646579", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 67 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", 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{ "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Characterization of the human prolyl 4-hydroxylase tetramer and its multifunctional protein disulfide-isomerase subunit synthesized in a baculovirus expression system.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "1992", "authors": "Vuori K, Pihlajaniemi T, Marttila M, Kivirikko KI", "reference": { "type": "PubMed", "id": "1323838", "url": "https://pubmed.ncbi.nlm.nih.gov/1323838" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O43897-1", 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"tax_name": "Human" }, { "uniprot_canonical_ac": "Q86Y22-1", "protein_name": "Collagen alpha-1(XXIII) chain", "gene_name": "COL23A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07237-1", "protein_name": "Protein disulfide-isomerase", "gene_name": "P4HB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12107-1", "protein_name": "Collagen alpha-1(XI) chain", "gene_name": "COL11A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A83-1", "protein_name": "Collagen alpha-1(XXVI) chain", "gene_name": "COL26A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14993-1", "protein_name": "Collagen alpha-1(XIX) chain", "gene_name": "COL19A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q32P28-1", "protein_name": "Prolyl 3-hydroxylase 1", "gene_name": "P3H1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IVL5-1", "protein_name": "Prolyl 3-hydroxylase 2", "gene_name": "P3H2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15460-1", "protein_name": "Prolyl 4-hydroxylase subunit alpha-2", "gene_name": "P4HA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95450-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 2", "gene_name": "ADAMTS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12110-1", "protein_name": "Collagen alpha-2(VI) chain", "gene_name": "COL6A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14031-1", "protein_name": "Collagen alpha-6(IV) chain", "gene_name": "COL4A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20908-1", "protein_name": "Collagen alpha-1(V) chain", "gene_name": "COL5A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02462-1", "protein_name": "Collagen alpha-1(IV) chain", "gene_name": "COL4A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27658-1", "protein_name": "Collagen alpha-1(VIII) chain", "gene_name": "COL8A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08572-1", "protein_name": "Collagen alpha-2(IV) chain", "gene_name": "COL4A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25067-1", "protein_name": "Collagen alpha-2(VIII) chain", "gene_name": "COL8A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20849-1", "protein_name": "Collagen alpha-1(IX) chain", "gene_name": "COL9A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25940-1", "protein_name": "Collagen alpha-3(V) chain", "gene_name": "COL5A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01955-1", "protein_name": "Collagen alpha-3(IV) chain", "gene_name": "COL4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z4N8-1", "protein_name": "Prolyl 4-hydroxylase subunit alpha-3", "gene_name": "P4HA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75718-1", "protein_name": "Cartilage-associated protein", "gene_name": "CRTAP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IVL6-1", "protein_name": "Prolyl 3-hydroxylase 3", "gene_name": "P3H3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6L7-1", "protein_name": "Tolloid-like protein 2", "gene_name": "TLL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02461-1", "protein_name": "Collagen alpha-1(III) chain", "gene_name": "COL3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07092-1", "protein_name": "Collagen alpha-1(XVI) chain", "gene_name": "COL16A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13942-1", "protein_name": "Collagen alpha-2(XI) chain", "gene_name": "COL11A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29400-1", "protein_name": "Collagen alpha-5(IV) chain", "gene_name": "COL4A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14055-1", "protein_name": "Collagen alpha-2(IX) chain", "gene_name": "COL9A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99715-1", "protein_name": "Collagen alpha-1(XII) chain", "gene_name": "COL12A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96P44-1", "protein_name": "Collagen alpha-1(XXI) chain", "gene_name": "COL21A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "A8TX70-1", "protein_name": "Collagen alpha-5(VI) chain", "gene_name": "COL6A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2UY09-1", "protein_name": "Collagen alpha-1(XXVIII) chain", "gene_name": "COL28A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05997-1", "protein_name": "Collagen alpha-2(V) chain", "gene_name": "COL5A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFW1-1", "protein_name": "Collagen alpha-1(XXII) chain", "gene_name": "COL22A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "A6NMZ7-1", "protein_name": "Collagen alpha-6(VI) chain", "gene_name": "COL6A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12111-1", "protein_name": "Collagen alpha-3(VI) chain", "gene_name": "COL6A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5TAT6-1", "protein_name": "Collagen alpha-1(XIII) chain", "gene_name": "COL13A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08123-1", "protein_name": "Collagen alpha-2(I) chain", "gene_name": "COL1A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P218-1", "protein_name": "Collagen alpha-1(XX) chain", "gene_name": "COL20A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12109-1", "protein_name": "Collagen alpha-1(VI) chain", "gene_name": "COL6A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02458-2", "protein_name": "Collagen alpha-1(II) chain", "gene_name": "COL2A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02388-1", "protein_name": "Collagen alpha-1(VII) chain", "gene_name": "COL7A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14050-1", "protein_name": "Collagen alpha-3(IX) chain", "gene_name": "COL9A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UMD9-1", "protein_name": "Collagen alpha-1(XVII) chain", "gene_name": "COL17A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXS0-1", "protein_name": "Collagen alpha-1(XXV) chain", "gene_name": "COL25A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23284-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase B", "gene_name": "PPIB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q03692-1", "protein_name": "Collagen alpha-1(X) chain", "gene_name": "COL10A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13497-1", "protein_name": "Bone morphogenetic protein 1", "gene_name": "BMP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NBJ5-1", "protein_name": "Procollagen galactosyltransferase 1", "gene_name": "COLGALT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYK4-1", "protein_name": "Procollagen galactosyltransferase 2", "gene_name": "COLGALT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00469-1", "protein_name": "Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2", "gene_name": "PLOD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02809-1", "protein_name": "Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1", "gene_name": "PLOD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13674-1", "protein_name": "Prolyl 4-hydroxylase subunit alpha-1", "gene_name": "P4HA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50454-1", "protein_name": "Serpin H1", "gene_name": "SERPINH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15072-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 3", "gene_name": "ADAMTS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WXS8-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 14", "gene_name": "ADAMTS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60568-1", "protein_name": "Multifunctional procollagen lysine hydroxylase and glycosyltransferase LH3", "gene_name": "PLOD3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39060-3", "protein_name": "Collagen alpha-1(XVIII) chain", "gene_name": "COL18A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15113-1", "protein_name": "Procollagen C-endopeptidase enhancer 1", "gene_name": "PCOLCE", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "O43897", "url": "https://www.uniprot.org/uniprotkb/O43897" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.1323838", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 67 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Identification and characterization of a third human, rat, and mouse collagen prolyl 4-hydroxylase isoenzyme.", "journal": "The Journal of biological chemistry", "date": "2003", "authors": "Kukkola L, Hieta R, Kivirikko KI, Myllyharju J", "reference": { "type": "PubMed", "id": "14500733", "url": "https://pubmed.ncbi.nlm.nih.gov/14500733" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O43897-1", "protein_name": "Tolloid-like protein 1", "gene_name": "TLL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02452-1", "protein_name": "Collagen alpha-1(I) chain", "gene_name": "COL1A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q17RW2-1", "protein_name": "Collagen alpha-1(XXIV) chain", "gene_name": "COL24A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKZ9-1", "protein_name": "Procollagen C-endopeptidase enhancer 2", "gene_name": "PCOLCE2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05707-1", "protein_name": "Collagen alpha-1(XIV) chain", "gene_name": "COL14A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39059-1", "protein_name": "Collagen alpha-1(XV) chain", "gene_name": "COL15A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53420-1", "protein_name": "Collagen alpha-4(IV) chain", "gene_name": "COL4A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IZC6-1", "protein_name": "Collagen alpha-1(XXVII) chain", "gene_name": "COL27A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86Y22-1", "protein_name": "Collagen alpha-1(XXIII) chain", "gene_name": "COL23A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6W3E9-1", "protein_name": "Prolyl 4-hydroxylase subunit alpha-3", "gene_name": "P4ha3", "tax_name": "Rat" }, { "uniprot_canonical_ac": "P07237-1", "protein_name": "Protein disulfide-isomerase", "gene_name": "P4HB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12107-1", "protein_name": "Collagen alpha-1(XI) chain", "gene_name": "COL11A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A83-1", "protein_name": "Collagen alpha-1(XXVI) chain", "gene_name": "COL26A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14993-1", "protein_name": "Collagen alpha-1(XIX) chain", "gene_name": "COL19A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6W3F0-1", "protein_name": "Prolyl 4-hydroxylase subunit alpha-3", "gene_name": "P4ha3", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q32P28-1", "protein_name": "Prolyl 3-hydroxylase 1", "gene_name": "P3H1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IVL5-1", "protein_name": "Prolyl 3-hydroxylase 2", "gene_name": "P3H2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15460-1", "protein_name": "Prolyl 4-hydroxylase subunit alpha-2", "gene_name": "P4HA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95450-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 2", "gene_name": "ADAMTS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12110-1", "protein_name": "Collagen alpha-2(VI) chain", "gene_name": "COL6A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14031-1", "protein_name": "Collagen alpha-6(IV) chain", "gene_name": "COL4A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20908-1", "protein_name": "Collagen alpha-1(V) chain", "gene_name": "COL5A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02462-1", "protein_name": "Collagen alpha-1(IV) chain", "gene_name": "COL4A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27658-1", "protein_name": "Collagen alpha-1(VIII) chain", "gene_name": "COL8A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08572-1", "protein_name": "Collagen alpha-2(IV) chain", "gene_name": "COL4A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25067-1", "protein_name": "Collagen alpha-2(VIII) chain", "gene_name": "COL8A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20849-1", "protein_name": "Collagen alpha-1(IX) chain", "gene_name": "COL9A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25940-1", "protein_name": "Collagen alpha-3(V) chain", "gene_name": "COL5A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01955-1", "protein_name": "Collagen alpha-3(IV) chain", "gene_name": "COL4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z4N8-1", "protein_name": "Prolyl 4-hydroxylase subunit alpha-3", "gene_name": "P4HA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75718-1", "protein_name": "Cartilage-associated protein", "gene_name": "CRTAP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IVL6-1", "protein_name": "Prolyl 3-hydroxylase 3", "gene_name": "P3H3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6L7-1", "protein_name": "Tolloid-like protein 2", "gene_name": "TLL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02461-1", "protein_name": "Collagen alpha-1(III) chain", "gene_name": "COL3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07092-1", "protein_name": "Collagen alpha-1(XVI) chain", "gene_name": "COL16A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13942-1", "protein_name": "Collagen alpha-2(XI) chain", "gene_name": "COL11A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29400-1", "protein_name": "Collagen alpha-5(IV) chain", "gene_name": "COL4A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14055-1", "protein_name": "Collagen alpha-2(IX) chain", "gene_name": "COL9A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99715-1", "protein_name": "Collagen alpha-1(XII) chain", "gene_name": "COL12A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96P44-1", "protein_name": "Collagen alpha-1(XXI) chain", "gene_name": "COL21A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "A8TX70-1", "protein_name": "Collagen alpha-5(VI) chain", "gene_name": "COL6A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2UY09-1", "protein_name": "Collagen alpha-1(XXVIII) chain", "gene_name": "COL28A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05997-1", "protein_name": "Collagen alpha-2(V) chain", "gene_name": "COL5A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFW1-1", "protein_name": "Collagen alpha-1(XXII) chain", "gene_name": "COL22A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "A6NMZ7-1", "protein_name": "Collagen alpha-6(VI) chain", "gene_name": "COL6A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12111-1", "protein_name": "Collagen alpha-3(VI) chain", "gene_name": "COL6A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5TAT6-1", "protein_name": "Collagen alpha-1(XIII) chain", "gene_name": "COL13A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08123-1", "protein_name": "Collagen alpha-2(I) chain", "gene_name": "COL1A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P218-1", "protein_name": "Collagen alpha-1(XX) chain", "gene_name": "COL20A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12109-1", "protein_name": "Collagen alpha-1(VI) chain", "gene_name": "COL6A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02458-2", "protein_name": "Collagen alpha-1(II) chain", "gene_name": "COL2A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02388-1", "protein_name": "Collagen alpha-1(VII) chain", "gene_name": "COL7A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14050-1", "protein_name": "Collagen alpha-3(IX) chain", "gene_name": "COL9A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UMD9-1", "protein_name": "Collagen alpha-1(XVII) chain", "gene_name": "COL17A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXS0-1", "protein_name": "Collagen alpha-1(XXV) chain", "gene_name": "COL25A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23284-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase B", "gene_name": "PPIB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q03692-1", "protein_name": "Collagen alpha-1(X) chain", "gene_name": "COL10A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13497-1", "protein_name": "Bone morphogenetic protein 1", "gene_name": "BMP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NBJ5-1", "protein_name": "Procollagen galactosyltransferase 1", "gene_name": "COLGALT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYK4-1", "protein_name": "Procollagen galactosyltransferase 2", "gene_name": "COLGALT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00469-1", "protein_name": "Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2", "gene_name": "PLOD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02809-1", "protein_name": "Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1", "gene_name": "PLOD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13674-1", "protein_name": "Prolyl 4-hydroxylase subunit alpha-1", "gene_name": "P4HA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50454-1", "protein_name": "Serpin H1", "gene_name": "SERPINH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15072-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 3", "gene_name": "ADAMTS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WXS8-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 14", "gene_name": "ADAMTS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60568-1", "protein_name": "Multifunctional procollagen lysine hydroxylase and glycosyltransferase LH3", "gene_name": "PLOD3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39060-3", "protein_name": "Collagen alpha-1(XVIII) chain", "gene_name": "COL18A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15113-1", "protein_name": "Procollagen C-endopeptidase enhancer 1", "gene_name": "PCOLCE", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "O43897", "url": "https://www.uniprot.org/uniprotkb/O43897" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.14500733", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 69 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Prolyl 3-hydroxylase 1, enzyme characterization and identification of a novel family of enzymes.", "journal": "The Journal of biological chemistry", "date": "2004", "authors": "Vranka JA, Sakai LY, Bachinger HP", "reference": { "type": "PubMed", "id": "15044469", "url": "https://pubmed.ncbi.nlm.nih.gov/15044469" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O43897-1", "protein_name": "Tolloid-like protein 1", "gene_name": "TLL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02452-1", "protein_name": "Collagen alpha-1(I) chain", "gene_name": "COL1A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q17RW2-1", "protein_name": "Collagen alpha-1(XXIV) chain", "gene_name": "COL24A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8CG70-1", "protein_name": "Prolyl 3-hydroxylase 3", "gene_name": "P3h3", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9UKZ9-1", "protein_name": "Procollagen C-endopeptidase enhancer 2", "gene_name": "PCOLCE2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05707-1", "protein_name": "Collagen alpha-1(XIV) chain", "gene_name": "COL14A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39059-1", "protein_name": "Collagen alpha-1(XV) chain", "gene_name": "COL15A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53420-1", "protein_name": "Collagen alpha-4(IV) chain", "gene_name": "COL4A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IZC6-1", "protein_name": "Collagen alpha-1(XXVII) chain", "gene_name": "COL27A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86Y22-1", "protein_name": "Collagen alpha-1(XXIII) chain", "gene_name": "COL23A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07237-1", "protein_name": "Protein disulfide-isomerase", "gene_name": "P4HB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12107-1", "protein_name": "Collagen alpha-1(XI) chain", "gene_name": "COL11A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A83-1", "protein_name": "Collagen alpha-1(XXVI) chain", "gene_name": "COL26A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14993-1", "protein_name": "Collagen alpha-1(XIX) chain", "gene_name": "COL19A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q32P28-1", "protein_name": "Prolyl 3-hydroxylase 1", "gene_name": "P3H1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IVL5-1", "protein_name": "Prolyl 3-hydroxylase 2", "gene_name": "P3H2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15460-1", "protein_name": "Prolyl 4-hydroxylase subunit alpha-2", "gene_name": "P4HA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95450-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 2", "gene_name": "ADAMTS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12110-1", "protein_name": "Collagen alpha-2(VI) chain", "gene_name": "COL6A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14031-1", "protein_name": "Collagen alpha-6(IV) chain", "gene_name": "COL4A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20908-1", "protein_name": "Collagen alpha-1(V) chain", "gene_name": "COL5A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02462-1", "protein_name": "Collagen alpha-1(IV) chain", "gene_name": "COL4A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27658-1", "protein_name": "Collagen alpha-1(VIII) chain", "gene_name": "COL8A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08572-1", "protein_name": "Collagen alpha-2(IV) chain", "gene_name": "COL4A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25067-1", "protein_name": "Collagen alpha-2(VIII) chain", "gene_name": "COL8A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20849-1", "protein_name": "Collagen alpha-1(IX) chain", "gene_name": "COL9A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25940-1", "protein_name": "Collagen alpha-3(V) chain", "gene_name": "COL5A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01955-1", "protein_name": "Collagen alpha-3(IV) chain", "gene_name": "COL4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z4N8-1", "protein_name": "Prolyl 4-hydroxylase subunit alpha-3", "gene_name": "P4HA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75718-1", "protein_name": "Cartilage-associated protein", "gene_name": "CRTAP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IVL6-1", "protein_name": "Prolyl 3-hydroxylase 3", "gene_name": "P3H3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6L7-1", "protein_name": "Tolloid-like protein 2", "gene_name": "TLL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02461-1", "protein_name": "Collagen alpha-1(III) chain", "gene_name": "COL3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07092-1", "protein_name": "Collagen alpha-1(XVI) chain", "gene_name": "COL16A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13942-1", "protein_name": "Collagen alpha-2(XI) chain", "gene_name": "COL11A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29400-1", "protein_name": "Collagen alpha-5(IV) chain", "gene_name": "COL4A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14055-1", "protein_name": "Collagen alpha-2(IX) chain", "gene_name": "COL9A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99715-1", "protein_name": "Collagen alpha-1(XII) chain", "gene_name": "COL12A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96P44-1", "protein_name": "Collagen alpha-1(XXI) chain", "gene_name": "COL21A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "A8TX70-1", "protein_name": "Collagen alpha-5(VI) chain", "gene_name": "COL6A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2UY09-1", "protein_name": "Collagen alpha-1(XXVIII) chain", "gene_name": "COL28A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05997-1", "protein_name": "Collagen alpha-2(V) chain", "gene_name": "COL5A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFW1-1", "protein_name": "Collagen alpha-1(XXII) chain", "gene_name": "COL22A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "A6NMZ7-1", "protein_name": "Collagen alpha-6(VI) chain", "gene_name": "COL6A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12111-1", "protein_name": "Collagen alpha-3(VI) chain", "gene_name": "COL6A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5TAT6-1", "protein_name": "Collagen alpha-1(XIII) chain", "gene_name": "COL13A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08123-1", "protein_name": "Collagen alpha-2(I) chain", "gene_name": "COL1A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P218-1", "protein_name": "Collagen alpha-1(XX) chain", "gene_name": "COL20A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12109-1", "protein_name": "Collagen alpha-1(VI) chain", "gene_name": "COL6A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02458-2", "protein_name": "Collagen alpha-1(II) chain", "gene_name": "COL2A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02388-1", "protein_name": "Collagen alpha-1(VII) chain", "gene_name": "COL7A1", "tax_name": "Human" }, { "uniprot_canonical_ac": 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"ADAMTS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WXS8-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 14", "gene_name": "ADAMTS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60568-1", "protein_name": "Multifunctional procollagen lysine hydroxylase and glycosyltransferase LH3", "gene_name": "PLOD3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39060-3", "protein_name": "Collagen alpha-1(XVIII) chain", "gene_name": "COL18A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15113-1", "protein_name": "Procollagen C-endopeptidase enhancer 1", "gene_name": "PCOLCE", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "O43897", "url": "https://www.uniprot.org/uniprotkb/O43897" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.15044469", "abstract": "", "glycosylation": [], 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"o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Cloning of human lysyl hydroxylase: complete cDNA-derived amino acid sequence and assignment of the gene (PLOD) to chromosome 1p36.3----p36.2.", "journal": "Genomics", "date": "1992", "authors": "Hautala T, Byers MG, Eddy RL, Shows TB, Kivirikko KI, Myllyla R", "reference": { "type": 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"o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Enzymatic hydroxylation of proline and lysine in protocollagen.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "1967", "authors": "Kivirikko KI, Prockop DJ", "reference": { "type": "PubMed", "id": "16591531", "url": "https://pubmed.ncbi.nlm.nih.gov/16591531" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O43897-1", "protein_name": "Tolloid-like protein 1", "gene_name": "TLL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02452-1", "protein_name": "Collagen alpha-1(I) chain", "gene_name": "COL1A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q17RW2-1", "protein_name": "Collagen alpha-1(XXIV) chain", "gene_name": "COL24A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKZ9-1", "protein_name": "Procollagen C-endopeptidase enhancer 2", "gene_name": "PCOLCE2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05707-1", 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"tax_name": "Human" }, { "uniprot_canonical_ac": "Q14993-1", "protein_name": "Collagen alpha-1(XIX) chain", "gene_name": "COL19A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q32P28-1", "protein_name": "Prolyl 3-hydroxylase 1", "gene_name": "P3H1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IVL5-1", "protein_name": "Prolyl 3-hydroxylase 2", "gene_name": "P3H2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15460-1", "protein_name": "Prolyl 4-hydroxylase subunit alpha-2", "gene_name": "P4HA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95450-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 2", "gene_name": "ADAMTS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12110-1", "protein_name": "Collagen alpha-2(VI) chain", "gene_name": "COL6A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14031-1", "protein_name": "Collagen alpha-6(IV) chain", "gene_name": "COL4A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20908-1", "protein_name": "Collagen alpha-1(V) chain", "gene_name": "COL5A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02462-1", "protein_name": "Collagen alpha-1(IV) chain", "gene_name": "COL4A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27658-1", "protein_name": "Collagen alpha-1(VIII) chain", "gene_name": "COL8A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08572-1", "protein_name": "Collagen alpha-2(IV) chain", "gene_name": "COL4A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25067-1", "protein_name": "Collagen alpha-2(VIII) chain", "gene_name": "COL8A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20849-1", "protein_name": "Collagen alpha-1(IX) chain", "gene_name": "COL9A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25940-1", "protein_name": "Collagen alpha-3(V) chain", "gene_name": "COL5A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01955-1", "protein_name": "Collagen alpha-3(IV) chain", "gene_name": "COL4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z4N8-1", "protein_name": "Prolyl 4-hydroxylase subunit alpha-3", "gene_name": "P4HA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75718-1", "protein_name": "Cartilage-associated protein", "gene_name": "CRTAP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IVL6-1", "protein_name": "Prolyl 3-hydroxylase 3", "gene_name": "P3H3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6L7-1", "protein_name": "Tolloid-like protein 2", "gene_name": "TLL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02461-1", "protein_name": "Collagen alpha-1(III) chain", "gene_name": "COL3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07092-1", "protein_name": "Collagen alpha-1(XVI) chain", "gene_name": "COL16A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13942-1", "protein_name": "Collagen alpha-2(XI) chain", "gene_name": "COL11A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29400-1", "protein_name": "Collagen 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"uniprot_canonical_ac": "A6NMZ7-1", "protein_name": "Collagen alpha-6(VI) chain", "gene_name": "COL6A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12111-1", "protein_name": "Collagen alpha-3(VI) chain", "gene_name": "COL6A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5TAT6-1", "protein_name": "Collagen alpha-1(XIII) chain", "gene_name": "COL13A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08123-1", "protein_name": "Collagen alpha-2(I) chain", "gene_name": "COL1A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P218-1", "protein_name": "Collagen alpha-1(XX) chain", "gene_name": "COL20A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12109-1", "protein_name": "Collagen alpha-1(VI) chain", "gene_name": "COL6A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02458-2", "protein_name": "Collagen alpha-1(II) chain", "gene_name": "COL2A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02388-1", "protein_name": "Collagen alpha-1(VII) chain", "gene_name": "COL7A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14050-1", "protein_name": "Collagen alpha-3(IX) chain", "gene_name": "COL9A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UMD9-1", "protein_name": "Collagen alpha-1(XVII) chain", "gene_name": "COL17A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXS0-1", "protein_name": "Collagen alpha-1(XXV) chain", "gene_name": "COL25A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23284-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase B", "gene_name": "PPIB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q03692-1", "protein_name": "Collagen alpha-1(X) chain", "gene_name": "COL10A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13497-1", "protein_name": "Bone morphogenetic protein 1", "gene_name": "BMP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NBJ5-1", "protein_name": "Procollagen galactosyltransferase 1", "gene_name": "COLGALT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYK4-1", "protein_name": "Procollagen galactosyltransferase 2", "gene_name": "COLGALT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00469-1", "protein_name": "Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2", "gene_name": "PLOD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02809-1", "protein_name": "Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1", "gene_name": "PLOD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13674-1", "protein_name": "Prolyl 4-hydroxylase subunit alpha-1", "gene_name": "P4HA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50454-1", "protein_name": "Serpin H1", "gene_name": "SERPINH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15072-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 3", "gene_name": "ADAMTS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WXS8-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 14", "gene_name": "ADAMTS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60568-1", "protein_name": "Multifunctional procollagen lysine hydroxylase and glycosyltransferase LH3", "gene_name": "PLOD3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39060-3", "protein_name": "Collagen alpha-1(XVIII) chain", "gene_name": "COL18A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15113-1", "protein_name": "Procollagen C-endopeptidase enhancer 1", "gene_name": "PCOLCE", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "O43897", "url": "https://www.uniprot.org/uniprotkb/O43897" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.16591531", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 67 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { 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"n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Characterization of recombinant human prolyl 3-hydroxylase isoenzyme 2, an enzyme modifying the basement membrane collagen IV.", "journal": "The Journal of biological chemistry", "date": "2008", "authors": "Tiainen P, Pasanen A, Sormunen R, Myllyharju J", "reference": { "type": "PubMed", "id": "18487197", "url": "https://pubmed.ncbi.nlm.nih.gov/18487197" }, "referenced_glycans": [], "referenced_proteins": [ { 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"gene_name": "COL8A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08572-1", "protein_name": "Collagen alpha-2(IV) chain", "gene_name": "COL4A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25067-1", "protein_name": "Collagen alpha-2(VIII) chain", "gene_name": "COL8A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20849-1", "protein_name": "Collagen alpha-1(IX) chain", "gene_name": "COL9A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25940-1", "protein_name": "Collagen alpha-3(V) chain", "gene_name": "COL5A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01955-1", "protein_name": "Collagen alpha-3(IV) chain", "gene_name": "COL4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z4N8-1", "protein_name": "Prolyl 4-hydroxylase subunit alpha-3", "gene_name": "P4HA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75718-1", "protein_name": "Cartilage-associated protein", "gene_name": "CRTAP", "tax_name": "Human" }, { "uniprot_canonical_ac": 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Mol. Biol.", "date": "2008", "authors": "Mac Sweeney A, Gil-Parrado S, Vinzenz D, Bernardi A, Hein A, Bodendorf U, Erbel P, Logel C, Gerhartz B", "reference": { "type": "PubMed", "id": "18824173", "url": "https://pubmed.ncbi.nlm.nih.gov/18824173" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O43897-1", "protein_name": "Tolloid-like protein 1", "gene_name": "TLL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6L7-1", "protein_name": "Tolloid-like protein 2", "gene_name": "TLL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13497-1", "protein_name": "Bone morphogenetic protein 1", "gene_name": "BMP1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "O43897", "url": "https://www.uniprot.org/uniprotkb/O43897" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.18824173", "abstract": "", 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[] } ] }, { "title": "Collagens.", "journal": "Cell and tissue research", "date": "2010", "authors": "Gordon MK, Hahn RA", "reference": { "type": "PubMed", "id": "19693541", "url": "https://pubmed.ncbi.nlm.nih.gov/19693541" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O43897-1", "protein_name": "Tolloid-like protein 1", "gene_name": "TLL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02452-1", "protein_name": "Collagen alpha-1(I) chain", "gene_name": "COL1A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q17RW2-1", "protein_name": "Collagen alpha-1(XXIV) chain", "gene_name": "COL24A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07858-1", "protein_name": "Cathepsin B", "gene_name": "CTSB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16144-1", "protein_name": "Integrin beta-4", "gene_name": "ITGB4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKZ9-1", "protein_name": "Procollagen C-endopeptidase enhancer 2", 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"protein_name": "Collagen alpha-1(XI) chain", "gene_name": "COL11A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A83-1", "protein_name": "Collagen alpha-1(XXVI) chain", "gene_name": "COL26A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14993-1", "protein_name": "Collagen alpha-1(XIX) chain", "gene_name": "COL19A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q32P28-1", "protein_name": "Prolyl 3-hydroxylase 1", "gene_name": "P3H1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IVL5-1", "protein_name": "Prolyl 3-hydroxylase 2", "gene_name": "P3H2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15460-1", "protein_name": "Prolyl 4-hydroxylase subunit alpha-2", "gene_name": "P4HA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95450-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 2", "gene_name": "ADAMTS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07711-1", "protein_name": "Procathepsin L", "gene_name": "CTSL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12110-1", "protein_name": "Collagen alpha-2(VI) chain", "gene_name": "COL6A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25774-1", "protein_name": "Cathepsin S", "gene_name": "CTSS", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14031-1", "protein_name": "Collagen alpha-6(IV) chain", "gene_name": "COL4A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20908-1", "protein_name": "Collagen alpha-1(V) chain", "gene_name": "COL5A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02462-1", "protein_name": "Collagen alpha-1(IV) chain", "gene_name": "COL4A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27658-1", "protein_name": "Collagen alpha-1(VIII) chain", "gene_name": "COL8A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60911-1", "protein_name": "Cathepsin L2", "gene_name": "CTSV", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08572-1", "protein_name": "Collagen alpha-2(IV) chain", "gene_name": "COL4A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25067-1", "protein_name": "Collagen alpha-2(VIII) chain", "gene_name": "COL8A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20849-1", "protein_name": "Collagen alpha-1(IX) chain", "gene_name": "COL9A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25940-1", "protein_name": "Collagen alpha-3(V) chain", "gene_name": "COL5A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01955-1", "protein_name": "Collagen alpha-3(IV) chain", "gene_name": "COL4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z4N8-1", "protein_name": "Prolyl 4-hydroxylase subunit alpha-3", "gene_name": "P4HA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13753-1", "protein_name": "Laminin subunit gamma-2", "gene_name": "LAMC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P45452-1", "protein_name": "Collagenase 3", "gene_name": "MMP13", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75718-1", "protein_name": "Cartilage-associated protein", "gene_name": "CRTAP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13751-1", "protein_name": "Laminin subunit beta-3", "gene_name": "LAMB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16787-2", "protein_name": "Laminin subunit alpha-3", "gene_name": "LAMA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09237-1", "protein_name": "Matrilysin", "gene_name": "MMP7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IVL6-1", "protein_name": "Prolyl 3-hydroxylase 3", "gene_name": "P3H3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6L7-1", "protein_name": "Tolloid-like protein 2", "gene_name": "TLL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02461-1", "protein_name": "Collagen alpha-1(III) chain", "gene_name": "COL3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07092-1", "protein_name": "Collagen alpha-1(XVI) chain", "gene_name": "COL16A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13942-1", "protein_name": "Collagen alpha-2(XI) chain", "gene_name": "COL11A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29400-1", "protein_name": "Collagen alpha-5(IV) chain", "gene_name": "COL4A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14055-1", "protein_name": "Collagen alpha-2(IX) chain", "gene_name": "COL9A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99715-1", "protein_name": "Collagen alpha-1(XII) chain", "gene_name": "COL12A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96P44-1", "protein_name": "Collagen alpha-1(XXI) chain", "gene_name": "COL21A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "A8TX70-1", "protein_name": "Collagen alpha-5(VI) chain", "gene_name": "COL6A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2UY09-1", "protein_name": "Collagen alpha-1(XXVIII) chain", "gene_name": "COL28A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05997-1", "protein_name": "Collagen alpha-2(V) chain", "gene_name": "COL5A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFW1-1", "protein_name": "Collagen alpha-1(XXII) chain", "gene_name": "COL22A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "A6NMZ7-1", "protein_name": "Collagen alpha-6(VI) chain", "gene_name": "COL6A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12111-1", "protein_name": "Collagen alpha-3(VI) chain", "gene_name": "COL6A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5TAT6-1", "protein_name": "Collagen alpha-1(XIII) chain", "gene_name": "COL13A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08123-1", "protein_name": "Collagen alpha-2(I) chain", "gene_name": "COL1A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P218-1", "protein_name": "Collagen alpha-1(XX) chain", "gene_name": "COL20A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12109-1", "protein_name": "Collagen alpha-1(VI) chain", "gene_name": "COL6A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02458-2", "protein_name": "Collagen alpha-1(II) chain", "gene_name": "COL2A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02388-1", "protein_name": "Collagen alpha-1(VII) chain", "gene_name": "COL7A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14050-1", "protein_name": "Collagen alpha-3(IX) chain", "gene_name": "COL9A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UMD9-1", "protein_name": "Collagen alpha-1(XVII) chain", "gene_name": "COL17A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14780-1", "protein_name": "Matrix metalloproteinase-9", "gene_name": "MMP9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXS0-1", "protein_name": "Collagen alpha-1(XXV) chain", "gene_name": "COL25A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15149-1", "protein_name": "Plectin", "gene_name": "PLEC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23284-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase B", "gene_name": "PPIB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q03692-1", "protein_name": "Collagen alpha-1(X) chain", "gene_name": "COL10A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13497-1", "protein_name": "Bone morphogenetic protein 1", "gene_name": "BMP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NBJ5-1", "protein_name": "Procollagen galactosyltransferase 1", "gene_name": "COLGALT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23229-1", "protein_name": "Integrin alpha-6", "gene_name": "ITGA6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYK4-1", "protein_name": "Procollagen galactosyltransferase 2", "gene_name": "COLGALT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00469-1", "protein_name": "Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2", "gene_name": "PLOD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02809-1", "protein_name": "Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1", "gene_name": "PLOD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13674-1", "protein_name": "Prolyl 4-hydroxylase subunit alpha-1", "gene_name": "P4HA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50454-1", "protein_name": "Serpin H1", "gene_name": "SERPINH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15072-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 3", "gene_name": "ADAMTS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WXS8-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 14", "gene_name": "ADAMTS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60568-1", "protein_name": "Multifunctional procollagen lysine hydroxylase and glycosyltransferase LH3", "gene_name": "PLOD3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08254-1", "protein_name": "Stromelysin-1", "gene_name": "MMP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60882-1", "protein_name": "Matrix metalloproteinase-20", "gene_name": "MMP20", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39060-3", "protein_name": "Collagen alpha-1(XVIII) chain", "gene_name": "COL18A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15113-1", "protein_name": "Procollagen C-endopeptidase enhancer 1", "gene_name": "PCOLCE", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "O43897", "url": "https://www.uniprot.org/uniprotkb/O43897" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.19693541", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 83 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The human collagen beta(1-O)galactosyltransferase, GLT25D1, is a soluble endoplasmic reticulum localized protein.", "journal": "BMC cell biology", "date": "2010", "authors": "Liefhebber JM, Punt S, Spaan WJ, van Leeuwen HC", "reference": { "type": "PubMed", "id": "20470363", "url": "https://pubmed.ncbi.nlm.nih.gov/20470363" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O43897-1", "protein_name": "Tolloid-like protein 1", "gene_name": "TLL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02452-1", "protein_name": "Collagen alpha-1(I) chain", "gene_name": "COL1A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q17RW2-1", "protein_name": "Collagen alpha-1(XXIV) chain", "gene_name": "COL24A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKZ9-1", "protein_name": "Procollagen C-endopeptidase enhancer 2", "gene_name": "PCOLCE2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05707-1", "protein_name": "Collagen alpha-1(XIV) chain", "gene_name": "COL14A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39059-1", "protein_name": "Collagen alpha-1(XV) chain", "gene_name": "COL15A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53420-1", "protein_name": "Collagen alpha-4(IV) chain", "gene_name": "COL4A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IZC6-1", "protein_name": "Collagen alpha-1(XXVII) chain", "gene_name": "COL27A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86Y22-1", "protein_name": "Collagen alpha-1(XXIII) chain", "gene_name": "COL23A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07237-1", "protein_name": "Protein disulfide-isomerase", "gene_name": "P4HB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12107-1", "protein_name": "Collagen alpha-1(XI) chain", "gene_name": "COL11A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A83-1", "protein_name": "Collagen alpha-1(XXVI) chain", "gene_name": "COL26A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14993-1", "protein_name": "Collagen alpha-1(XIX) chain", "gene_name": "COL19A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q32P28-1", "protein_name": "Prolyl 3-hydroxylase 1", "gene_name": "P3H1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IVL5-1", "protein_name": "Prolyl 3-hydroxylase 2", "gene_name": "P3H2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15460-1", "protein_name": "Prolyl 4-hydroxylase subunit alpha-2", "gene_name": "P4HA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95450-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 2", "gene_name": "ADAMTS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12110-1", "protein_name": "Collagen alpha-2(VI) chain", "gene_name": "COL6A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14031-1", "protein_name": "Collagen alpha-6(IV) chain", "gene_name": "COL4A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20908-1", "protein_name": "Collagen alpha-1(V) chain", "gene_name": "COL5A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02462-1", "protein_name": "Collagen alpha-1(IV) chain", "gene_name": "COL4A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27658-1", "protein_name": "Collagen alpha-1(VIII) chain", "gene_name": "COL8A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08572-1", "protein_name": "Collagen alpha-2(IV) chain", "gene_name": "COL4A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25067-1", "protein_name": "Collagen alpha-2(VIII) chain", "gene_name": "COL8A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20849-1", "protein_name": "Collagen alpha-1(IX) chain", "gene_name": "COL9A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25940-1", "protein_name": "Collagen alpha-3(V) chain", "gene_name": "COL5A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01955-1", "protein_name": "Collagen alpha-3(IV) chain", "gene_name": "COL4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z4N8-1", "protein_name": "Prolyl 4-hydroxylase subunit alpha-3", "gene_name": "P4HA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75718-1", "protein_name": "Cartilage-associated protein", "gene_name": "CRTAP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IVL6-1", "protein_name": "Prolyl 3-hydroxylase 3", "gene_name": "P3H3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6L7-1", "protein_name": "Tolloid-like protein 2", "gene_name": "TLL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02461-1", "protein_name": "Collagen alpha-1(III) chain", "gene_name": "COL3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07092-1", "protein_name": "Collagen alpha-1(XVI) chain", "gene_name": "COL16A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13942-1", "protein_name": "Collagen alpha-2(XI) chain", "gene_name": "COL11A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29400-1", "protein_name": "Collagen alpha-5(IV) chain", "gene_name": "COL4A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14055-1", "protein_name": "Collagen alpha-2(IX) chain", "gene_name": "COL9A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99715-1", "protein_name": "Collagen alpha-1(XII) chain", "gene_name": "COL12A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96P44-1", "protein_name": "Collagen alpha-1(XXI) chain", "gene_name": "COL21A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "A8TX70-1", "protein_name": "Collagen alpha-5(VI) chain", "gene_name": "COL6A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2UY09-1", "protein_name": "Collagen alpha-1(XXVIII) chain", "gene_name": "COL28A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05997-1", "protein_name": "Collagen alpha-2(V) chain", "gene_name": "COL5A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFW1-1", "protein_name": "Collagen alpha-1(XXII) chain", "gene_name": "COL22A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "A6NMZ7-1", "protein_name": "Collagen alpha-6(VI) chain", "gene_name": "COL6A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12111-1", "protein_name": "Collagen alpha-3(VI) chain", "gene_name": "COL6A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5TAT6-1", "protein_name": "Collagen alpha-1(XIII) chain", "gene_name": "COL13A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08123-1", "protein_name": "Collagen alpha-2(I) chain", "gene_name": "COL1A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P218-1", "protein_name": "Collagen alpha-1(XX) chain", "gene_name": "COL20A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12109-1", "protein_name": "Collagen alpha-1(VI) chain", "gene_name": "COL6A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02458-2", "protein_name": "Collagen alpha-1(II) chain", "gene_name": "COL2A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02388-1", "protein_name": "Collagen alpha-1(VII) chain", "gene_name": "COL7A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14050-1", "protein_name": "Collagen alpha-3(IX) chain", "gene_name": "COL9A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UMD9-1", "protein_name": "Collagen alpha-1(XVII) chain", "gene_name": "COL17A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXS0-1", "protein_name": "Collagen alpha-1(XXV) chain", "gene_name": "COL25A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23284-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase B", "gene_name": "PPIB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q03692-1", "protein_name": "Collagen alpha-1(X) chain", "gene_name": "COL10A1", "tax_name": "Human" }, 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"field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Protein export at the ER: loading big collagens into COPII carriers.", "journal": "The EMBO journal", "date": "2011", "authors": "Malhotra V, Erlmann P", 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"o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Stepwise proteolytic activation of type I procollagen to collagen within the secretory pathway of tendon fibroblasts in situ.", "journal": "The Biochemical journal", "date": "2012", "authors": "Canty-Laird EG, Lu Y, Kadler KE", "reference": { "type": "PubMed", "id": "21967573", "url": "https://pubmed.ncbi.nlm.nih.gov/21967573" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O43897-1", "protein_name": "Tolloid-like protein 1", "gene_name": 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"protein_name": "Collagen alpha-1(XXIII) chain", "gene_name": "COL23A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07237-1", "protein_name": "Protein disulfide-isomerase", "gene_name": "P4HB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12107-1", "protein_name": "Collagen alpha-1(XI) chain", "gene_name": "COL11A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A83-1", "protein_name": "Collagen alpha-1(XXVI) chain", "gene_name": "COL26A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14993-1", "protein_name": "Collagen alpha-1(XIX) chain", "gene_name": "COL19A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q32P28-1", "protein_name": "Prolyl 3-hydroxylase 1", "gene_name": "P3H1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IVL5-1", "protein_name": "Prolyl 3-hydroxylase 2", "gene_name": "P3H2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15460-1", "protein_name": "Prolyl 4-hydroxylase subunit alpha-2", "gene_name": "P4HA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95450-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 2", "gene_name": "ADAMTS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12110-1", "protein_name": "Collagen alpha-2(VI) chain", "gene_name": "COL6A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14031-1", "protein_name": "Collagen alpha-6(IV) chain", "gene_name": "COL4A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20908-1", "protein_name": "Collagen alpha-1(V) chain", "gene_name": "COL5A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02462-1", "protein_name": "Collagen alpha-1(IV) chain", "gene_name": "COL4A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27658-1", "protein_name": "Collagen alpha-1(VIII) chain", "gene_name": "COL8A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08572-1", "protein_name": "Collagen alpha-2(IV) chain", "gene_name": "COL4A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25067-1", "protein_name": "Collagen alpha-2(VIII) chain", "gene_name": "COL8A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20849-1", "protein_name": "Collagen alpha-1(IX) chain", "gene_name": "COL9A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25940-1", "protein_name": "Collagen alpha-3(V) chain", "gene_name": "COL5A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01955-1", "protein_name": "Collagen alpha-3(IV) chain", "gene_name": "COL4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z4N8-1", "protein_name": "Prolyl 4-hydroxylase subunit alpha-3", "gene_name": "P4HA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75718-1", "protein_name": "Cartilage-associated protein", "gene_name": "CRTAP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IVL6-1", "protein_name": "Prolyl 3-hydroxylase 3", "gene_name": "P3H3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6L7-1", "protein_name": "Tolloid-like protein 2", "gene_name": "TLL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02461-1", "protein_name": "Collagen alpha-1(III) chain", "gene_name": "COL3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07092-1", "protein_name": "Collagen alpha-1(XVI) chain", "gene_name": "COL16A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13942-1", "protein_name": "Collagen alpha-2(XI) chain", "gene_name": "COL11A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29400-1", "protein_name": "Collagen alpha-5(IV) chain", "gene_name": "COL4A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14055-1", "protein_name": "Collagen alpha-2(IX) chain", "gene_name": "COL9A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99715-1", "protein_name": "Collagen alpha-1(XII) chain", "gene_name": "COL12A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96P44-1", "protein_name": "Collagen alpha-1(XXI) chain", "gene_name": "COL21A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "A8TX70-1", "protein_name": "Collagen alpha-5(VI) chain", "gene_name": "COL6A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2UY09-1", "protein_name": "Collagen alpha-1(XXVIII) chain", "gene_name": "COL28A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05997-1", "protein_name": "Collagen alpha-2(V) chain", "gene_name": "COL5A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFW1-1", "protein_name": "Collagen alpha-1(XXII) chain", "gene_name": "COL22A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "A6NMZ7-1", "protein_name": "Collagen alpha-6(VI) chain", "gene_name": "COL6A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12111-1", "protein_name": "Collagen alpha-3(VI) chain", "gene_name": "COL6A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5TAT6-1", "protein_name": "Collagen alpha-1(XIII) chain", "gene_name": "COL13A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08123-1", "protein_name": "Collagen alpha-2(I) chain", "gene_name": "COL1A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P218-1", "protein_name": "Collagen alpha-1(XX) chain", "gene_name": "COL20A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12109-1", "protein_name": "Collagen alpha-1(VI) chain", "gene_name": "COL6A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02458-2", "protein_name": "Collagen alpha-1(II) chain", "gene_name": "COL2A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02388-1", "protein_name": "Collagen alpha-1(VII) chain", "gene_name": "COL7A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14050-1", "protein_name": "Collagen alpha-3(IX) chain", "gene_name": "COL9A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UMD9-1", "protein_name": "Collagen alpha-1(XVII) chain", "gene_name": "COL17A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXS0-1", "protein_name": "Collagen alpha-1(XXV) chain", "gene_name": "COL25A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23284-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase B", "gene_name": "PPIB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q03692-1", "protein_name": "Collagen alpha-1(X) chain", "gene_name": "COL10A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13497-1", "protein_name": "Bone morphogenetic protein 1", "gene_name": "BMP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NBJ5-1", "protein_name": "Procollagen galactosyltransferase 1", "gene_name": "COLGALT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYK4-1", "protein_name": "Procollagen galactosyltransferase 2", "gene_name": "COLGALT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00469-1", "protein_name": "Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2", "gene_name": "PLOD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02809-1", "protein_name": "Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1", "gene_name": "PLOD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13674-1", "protein_name": "Prolyl 4-hydroxylase subunit alpha-1", "gene_name": "P4HA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50454-1", "protein_name": "Serpin H1", "gene_name": "SERPINH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15072-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 3", "gene_name": "ADAMTS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WXS8-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 14", "gene_name": "ADAMTS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60568-1", "protein_name": "Multifunctional procollagen lysine hydroxylase and glycosyltransferase LH3", "gene_name": "PLOD3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39060-3", "protein_name": "Collagen alpha-1(XVIII) chain", "gene_name": "COL18A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15113-1", "protein_name": "Procollagen C-endopeptidase enhancer 1", "gene_name": "PCOLCE", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "O43897", "url": "https://www.uniprot.org/uniprotkb/O43897" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.21967573", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 67 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { 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"n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Molecular cloning of the alpha-subunit of human prolyl 4-hydroxylase: the complete cDNA-derived amino acid sequence and evidence for alternative splicing of RNA transcripts.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "1989", "authors": "Helaakoski T, Vuori K, Myllyla R, Kivirikko KI, Pihlajaniemi T", "reference": { "type": "PubMed", "id": "2543975", "url": "https://pubmed.ncbi.nlm.nih.gov/2543975" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O43897-1", "protein_name": "Tolloid-like protein 1", "gene_name": "TLL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02452-1", "protein_name": "Collagen alpha-1(I) chain", "gene_name": "COL1A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q17RW2-1", "protein_name": "Collagen alpha-1(XXIV) chain", "gene_name": "COL24A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKZ9-1", "protein_name": "Procollagen C-endopeptidase enhancer 2", "gene_name": "PCOLCE2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05707-1", "protein_name": "Collagen alpha-1(XIV) chain", "gene_name": "COL14A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39059-1", "protein_name": "Collagen alpha-1(XV) chain", "gene_name": "COL15A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53420-1", "protein_name": "Collagen alpha-4(IV) chain", "gene_name": "COL4A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IZC6-1", "protein_name": "Collagen alpha-1(XXVII) chain", "gene_name": "COL27A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86Y22-1", "protein_name": "Collagen alpha-1(XXIII) chain", "gene_name": "COL23A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07237-1", "protein_name": "Protein disulfide-isomerase", "gene_name": "P4HB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12107-1", "protein_name": "Collagen alpha-1(XI) chain", "gene_name": "COL11A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A83-1", "protein_name": "Collagen alpha-1(XXVI) chain", "gene_name": "COL26A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14993-1", "protein_name": "Collagen alpha-1(XIX) chain", "gene_name": "COL19A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q32P28-1", "protein_name": "Prolyl 3-hydroxylase 1", "gene_name": "P3H1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IVL5-1", "protein_name": "Prolyl 3-hydroxylase 2", "gene_name": "P3H2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15460-1", "protein_name": "Prolyl 4-hydroxylase subunit alpha-2", "gene_name": "P4HA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95450-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 2", "gene_name": "ADAMTS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12110-1", "protein_name": "Collagen alpha-2(VI) chain", "gene_name": "COL6A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14031-1", "protein_name": "Collagen alpha-6(IV) chain", "gene_name": "COL4A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20908-1", "protein_name": "Collagen alpha-1(V) chain", "gene_name": "COL5A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02462-1", "protein_name": "Collagen alpha-1(IV) chain", "gene_name": "COL4A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27658-1", "protein_name": "Collagen alpha-1(VIII) chain", "gene_name": "COL8A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08572-1", "protein_name": "Collagen alpha-2(IV) chain", "gene_name": "COL4A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25067-1", "protein_name": "Collagen alpha-2(VIII) chain", "gene_name": "COL8A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20849-1", "protein_name": "Collagen alpha-1(IX) chain", "gene_name": "COL9A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25940-1", "protein_name": "Collagen alpha-3(V) chain", "gene_name": "COL5A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01955-1", "protein_name": "Collagen alpha-3(IV) chain", "gene_name": "COL4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z4N8-1", "protein_name": "Prolyl 4-hydroxylase subunit alpha-3", "gene_name": "P4HA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75718-1", "protein_name": "Cartilage-associated protein", "gene_name": "CRTAP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IVL6-1", "protein_name": "Prolyl 3-hydroxylase 3", "gene_name": "P3H3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6L7-1", "protein_name": "Tolloid-like protein 2", "gene_name": "TLL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02461-1", "protein_name": "Collagen alpha-1(III) chain", "gene_name": "COL3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07092-1", "protein_name": "Collagen alpha-1(XVI) chain", "gene_name": "COL16A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13942-1", "protein_name": "Collagen alpha-2(XI) chain", "gene_name": "COL11A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29400-1", "protein_name": "Collagen alpha-5(IV) chain", "gene_name": "COL4A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14055-1", "protein_name": "Collagen alpha-2(IX) chain", "gene_name": "COL9A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99715-1", "protein_name": "Collagen alpha-1(XII) chain", "gene_name": "COL12A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96P44-1", "protein_name": "Collagen alpha-1(XXI) chain", "gene_name": "COL21A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "A8TX70-1", "protein_name": "Collagen alpha-5(VI) chain", "gene_name": "COL6A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2UY09-1", "protein_name": "Collagen alpha-1(XXVIII) chain", "gene_name": "COL28A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05997-1", "protein_name": "Collagen alpha-2(V) chain", "gene_name": "COL5A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFW1-1", "protein_name": "Collagen alpha-1(XXII) chain", "gene_name": "COL22A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "A6NMZ7-1", "protein_name": "Collagen alpha-6(VI) chain", "gene_name": "COL6A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12111-1", "protein_name": "Collagen alpha-3(VI) chain", "gene_name": "COL6A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5TAT6-1", "protein_name": "Collagen alpha-1(XIII) chain", "gene_name": "COL13A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08123-1", "protein_name": "Collagen alpha-2(I) chain", "gene_name": "COL1A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P218-1", "protein_name": "Collagen alpha-1(XX) chain", "gene_name": "COL20A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12109-1", "protein_name": "Collagen alpha-1(VI) chain", "gene_name": "COL6A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02458-2", "protein_name": "Collagen alpha-1(II) chain", "gene_name": "COL2A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02388-1", "protein_name": "Collagen alpha-1(VII) chain", "gene_name": "COL7A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14050-1", "protein_name": "Collagen alpha-3(IX) chain", "gene_name": "COL9A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UMD9-1", "protein_name": "Collagen alpha-1(XVII) chain", "gene_name": "COL17A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXS0-1", "protein_name": "Collagen alpha-1(XXV) chain", "gene_name": "COL25A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23284-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase B", "gene_name": "PPIB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q03692-1", "protein_name": "Collagen alpha-1(X) chain", "gene_name": "COL10A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13497-1", "protein_name": "Bone morphogenetic protein 1", "gene_name": "BMP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NBJ5-1", "protein_name": "Procollagen galactosyltransferase 1", "gene_name": "COLGALT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYK4-1", "protein_name": "Procollagen galactosyltransferase 2", "gene_name": "COLGALT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00469-1", "protein_name": "Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2", "gene_name": "PLOD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02809-1", "protein_name": "Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1", "gene_name": "PLOD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13674-1", "protein_name": "Prolyl 4-hydroxylase subunit alpha-1", "gene_name": "P4HA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50454-1", "protein_name": "Serpin H1", "gene_name": "SERPINH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15072-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 3", "gene_name": "ADAMTS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WXS8-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 14", "gene_name": "ADAMTS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60568-1", "protein_name": "Multifunctional procollagen lysine hydroxylase and glycosyltransferase LH3", "gene_name": "PLOD3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39060-3", "protein_name": "Collagen alpha-1(XVIII) chain", "gene_name": "COL18A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15113-1", "protein_name": "Procollagen C-endopeptidase enhancer 1", "gene_name": "PCOLCE", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "O43897", "url": "https://www.uniprot.org/uniprotkb/O43897" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.2543975", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 67 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": 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"field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The tissue form of type VII collagen is an antiparallel dimer.", "journal": "The Journal of biological chemistry", "date": "1986", "authors": "Morris NP, Keene DR, Glanville RW, Bentz H, Burgeson RE", "reference": { "type": "PubMed", "id": "3082888", "url": "https://pubmed.ncbi.nlm.nih.gov/3082888" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O43897-1", "protein_name": "Tolloid-like protein 1", "gene_name": "TLL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02452-1", "protein_name": "Collagen alpha-1(I) chain", "gene_name": "COL1A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53420-1", "protein_name": "Collagen alpha-4(IV) chain", "gene_name": "COL4A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14031-1", "protein_name": "Collagen alpha-6(IV) chain", "gene_name": "COL4A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02462-1", "protein_name": "Collagen alpha-1(IV) chain", "gene_name": "COL4A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08572-1", "protein_name": "Collagen alpha-2(IV) chain", "gene_name": "COL4A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01955-1", "protein_name": "Collagen alpha-3(IV) chain", "gene_name": "COL4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13753-1", "protein_name": "Laminin subunit gamma-2", "gene_name": "LAMC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13751-1", "protein_name": "Laminin subunit beta-3", "gene_name": "LAMB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16787-2", "protein_name": "Laminin subunit alpha-3", "gene_name": "LAMA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6L7-1", "protein_name": "Tolloid-like protein 2", "gene_name": "TLL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29400-1", "protein_name": "Collagen alpha-5(IV) chain", "gene_name": "COL4A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08123-1", "protein_name": "Collagen alpha-2(I) chain", "gene_name": "COL1A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02388-1", "protein_name": "Collagen alpha-1(VII) chain", "gene_name": "COL7A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13497-1", "protein_name": "Bone morphogenetic protein 1", "gene_name": "BMP1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "O43897", "url": "https://www.uniprot.org/uniprotkb/O43897" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.3082888", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 15 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Defective co-translational formation of disulphide bonds in protein disulphide-isomerase-deficient microsomes.", "journal": "Nature", "date": "1988", "authors": "Bulleid NJ, Freedman RB", "reference": { "type": "PubMed", "id": "3173483", "url": "https://pubmed.ncbi.nlm.nih.gov/3173483" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O43897-1", "protein_name": "Tolloid-like protein 1", "gene_name": "TLL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02452-1", "protein_name": "Collagen alpha-1(I) chain", "gene_name": "COL1A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q17RW2-1", "protein_name": "Collagen alpha-1(XXIV) chain", "gene_name": "COL24A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKZ9-1", "protein_name": "Procollagen C-endopeptidase enhancer 2", "gene_name": "PCOLCE2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05707-1", "protein_name": "Collagen alpha-1(XIV) chain", "gene_name": "COL14A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39059-1", "protein_name": "Collagen alpha-1(XV) chain", "gene_name": "COL15A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53420-1", "protein_name": "Collagen alpha-4(IV) chain", "gene_name": "COL4A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IZC6-1", "protein_name": "Collagen alpha-1(XXVII) chain", "gene_name": "COL27A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86Y22-1", "protein_name": "Collagen alpha-1(XXIII) chain", "gene_name": "COL23A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07237-1", "protein_name": "Protein disulfide-isomerase", "gene_name": "P4HB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12107-1", "protein_name": "Collagen alpha-1(XI) chain", "gene_name": "COL11A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A83-1", "protein_name": "Collagen alpha-1(XXVI) chain", "gene_name": "COL26A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14993-1", "protein_name": "Collagen alpha-1(XIX) chain", "gene_name": "COL19A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q32P28-1", "protein_name": "Prolyl 3-hydroxylase 1", "gene_name": "P3H1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IVL5-1", "protein_name": "Prolyl 3-hydroxylase 2", "gene_name": "P3H2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15460-1", "protein_name": "Prolyl 4-hydroxylase subunit alpha-2", "gene_name": "P4HA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95450-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 2", "gene_name": "ADAMTS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12110-1", "protein_name": "Collagen alpha-2(VI) chain", "gene_name": "COL6A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14031-1", "protein_name": "Collagen alpha-6(IV) chain", "gene_name": "COL4A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20908-1", "protein_name": "Collagen alpha-1(V) chain", "gene_name": "COL5A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02462-1", "protein_name": "Collagen alpha-1(IV) chain", "gene_name": "COL4A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27658-1", "protein_name": "Collagen alpha-1(VIII) chain", "gene_name": "COL8A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08572-1", "protein_name": "Collagen alpha-2(IV) chain", "gene_name": "COL4A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25067-1", "protein_name": "Collagen alpha-2(VIII) chain", "gene_name": "COL8A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20849-1", "protein_name": "Collagen alpha-1(IX) chain", "gene_name": "COL9A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25940-1", "protein_name": "Collagen alpha-3(V) chain", "gene_name": "COL5A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01955-1", "protein_name": "Collagen alpha-3(IV) chain", "gene_name": "COL4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z4N8-1", "protein_name": "Prolyl 4-hydroxylase subunit 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"protein_name": "Collagen alpha-2(IX) chain", "gene_name": "COL9A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99715-1", "protein_name": "Collagen alpha-1(XII) chain", "gene_name": "COL12A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96P44-1", "protein_name": "Collagen alpha-1(XXI) chain", "gene_name": "COL21A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "A8TX70-1", "protein_name": "Collagen alpha-5(VI) chain", "gene_name": "COL6A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2UY09-1", "protein_name": "Collagen alpha-1(XXVIII) chain", "gene_name": "COL28A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05997-1", "protein_name": "Collagen alpha-2(V) chain", "gene_name": "COL5A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFW1-1", "protein_name": "Collagen alpha-1(XXII) chain", "gene_name": "COL22A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "A6NMZ7-1", "protein_name": "Collagen alpha-6(VI) chain", "gene_name": "COL6A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12111-1", "protein_name": "Collagen alpha-3(VI) chain", "gene_name": "COL6A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5TAT6-1", "protein_name": "Collagen alpha-1(XIII) chain", "gene_name": "COL13A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08123-1", "protein_name": "Collagen alpha-2(I) chain", "gene_name": "COL1A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P218-1", "protein_name": "Collagen alpha-1(XX) chain", "gene_name": "COL20A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12109-1", "protein_name": "Collagen alpha-1(VI) chain", "gene_name": "COL6A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02458-2", "protein_name": "Collagen alpha-1(II) chain", "gene_name": "COL2A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02388-1", "protein_name": "Collagen alpha-1(VII) chain", "gene_name": "COL7A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14050-1", "protein_name": "Collagen alpha-3(IX) chain", "gene_name": "COL9A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UMD9-1", "protein_name": "Collagen alpha-1(XVII) chain", "gene_name": "COL17A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXS0-1", "protein_name": "Collagen alpha-1(XXV) chain", "gene_name": "COL25A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23284-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase B", "gene_name": "PPIB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q03692-1", "protein_name": "Collagen alpha-1(X) chain", "gene_name": "COL10A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13497-1", "protein_name": "Bone morphogenetic protein 1", "gene_name": "BMP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NBJ5-1", "protein_name": "Procollagen galactosyltransferase 1", "gene_name": "COLGALT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYK4-1", "protein_name": "Procollagen galactosyltransferase 2", "gene_name": "COLGALT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00469-1", "protein_name": "Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2", "gene_name": "PLOD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02809-1", "protein_name": "Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1", "gene_name": "PLOD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13674-1", "protein_name": "Prolyl 4-hydroxylase subunit alpha-1", "gene_name": "P4HA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50454-1", "protein_name": "Serpin H1", "gene_name": "SERPINH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15072-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 3", "gene_name": "ADAMTS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WXS8-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 14", "gene_name": "ADAMTS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60568-1", "protein_name": "Multifunctional procollagen lysine 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Characterization of tolloid-mediated cleavage of the GDF8 procomplex.", "journal": "The Biochemical journal", "date": "2021", "authors": "McCoy JC, Goebel EJ, Thompson TB", "reference": { "type": "PubMed", "id": "33876824", "url": "https://pubmed.ncbi.nlm.nih.gov/33876824" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O43897-1", "protein_name": "Tolloid-like protein 1", "gene_name": "TLL1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "O43897", "url": "https://www.uniprot.org/uniprotkb/O43897" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.33876824", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": 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"gene_name": "COL8A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20849-1", "protein_name": "Collagen alpha-1(IX) chain", "gene_name": "COL9A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25940-1", "protein_name": "Collagen alpha-3(V) chain", "gene_name": "COL5A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01955-1", "protein_name": "Collagen alpha-3(IV) chain", "gene_name": "COL4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z4N8-1", "protein_name": "Prolyl 4-hydroxylase subunit alpha-3", "gene_name": "P4HA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75718-1", "protein_name": "Cartilage-associated protein", "gene_name": "CRTAP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IVL6-1", "protein_name": "Prolyl 3-hydroxylase 3", "gene_name": "P3H3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6L7-1", "protein_name": "Tolloid-like protein 2", "gene_name": "TLL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02461-1", "protein_name": "Collagen alpha-1(III) chain", "gene_name": "COL3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07092-1", "protein_name": "Collagen alpha-1(XVI) chain", "gene_name": "COL16A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13942-1", "protein_name": "Collagen alpha-2(XI) chain", "gene_name": "COL11A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29400-1", "protein_name": "Collagen alpha-5(IV) chain", "gene_name": "COL4A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14055-1", "protein_name": "Collagen alpha-2(IX) chain", "gene_name": "COL9A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99715-1", "protein_name": "Collagen alpha-1(XII) chain", "gene_name": "COL12A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96P44-1", "protein_name": "Collagen alpha-1(XXI) chain", "gene_name": "COL21A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "A8TX70-1", "protein_name": "Collagen alpha-5(VI) chain", "gene_name": "COL6A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2UY09-1", "protein_name": "Collagen alpha-1(XXVIII) chain", "gene_name": "COL28A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05997-1", "protein_name": "Collagen alpha-2(V) chain", "gene_name": "COL5A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFW1-1", "protein_name": "Collagen alpha-1(XXII) chain", "gene_name": "COL22A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "A6NMZ7-1", "protein_name": "Collagen alpha-6(VI) chain", "gene_name": "COL6A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12111-1", "protein_name": "Collagen alpha-3(VI) chain", "gene_name": "COL6A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5TAT6-1", "protein_name": "Collagen alpha-1(XIII) chain", "gene_name": "COL13A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08123-1", "protein_name": "Collagen alpha-2(I) chain", "gene_name": "COL1A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P218-1", "protein_name": "Collagen alpha-1(XX) chain", "gene_name": "COL20A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12109-1", "protein_name": "Collagen alpha-1(VI) chain", "gene_name": "COL6A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02458-2", "protein_name": "Collagen alpha-1(II) chain", "gene_name": "COL2A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02388-1", "protein_name": "Collagen alpha-1(VII) chain", "gene_name": "COL7A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14050-1", "protein_name": "Collagen alpha-3(IX) chain", "gene_name": "COL9A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UMD9-1", "protein_name": "Collagen alpha-1(XVII) chain", "gene_name": "COL17A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXS0-1", "protein_name": "Collagen alpha-1(XXV) chain", "gene_name": "COL25A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23284-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase B", "gene_name": "PPIB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q03692-1", "protein_name": "Collagen alpha-1(X) chain", "gene_name": "COL10A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13497-1", "protein_name": "Bone morphogenetic protein 1", "gene_name": "BMP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NBJ5-1", "protein_name": "Procollagen galactosyltransferase 1", "gene_name": "COLGALT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYK4-1", "protein_name": "Procollagen galactosyltransferase 2", "gene_name": "COLGALT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00469-1", "protein_name": "Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2", "gene_name": "PLOD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02809-1", "protein_name": "Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1", "gene_name": "PLOD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13674-1", "protein_name": "Prolyl 4-hydroxylase subunit alpha-1", "gene_name": "P4HA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50454-1", "protein_name": "Serpin H1", "gene_name": "SERPINH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15072-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 3", "gene_name": "ADAMTS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WXS8-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 14", "gene_name": "ADAMTS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60568-1", "protein_name": "Multifunctional procollagen lysine hydroxylase and glycosyltransferase LH3", "gene_name": "PLOD3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39060-3", "protein_name": "Collagen alpha-1(XVIII) chain", "gene_name": "COL18A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15113-1", "protein_name": "Procollagen C-endopeptidase enhancer 1", "gene_name": "PCOLCE", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Electron-microscopical approach to a structural model of intima collagen.", "journal": "The Biochemical journal", "date": "1983", "authors": "Furthmayr H, Wiedemann H, Timpl R, Odermatt E, Engel J", "reference": { "type": "PubMed", "id": "6307276", "url": "https://pubmed.ncbi.nlm.nih.gov/6307276" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O43897-1", "protein_name": "Tolloid-like protein 1", "gene_name": "TLL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02452-1", "protein_name": "Collagen alpha-1(I) chain", "gene_name": "COL1A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q17RW2-1", "protein_name": "Collagen alpha-1(XXIV) chain", "gene_name": "COL24A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKZ9-1", "protein_name": "Procollagen C-endopeptidase enhancer 2", "gene_name": "PCOLCE2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05707-1", "protein_name": "Collagen alpha-1(XIV) chain", "gene_name": "COL14A1", "tax_name": "Human" }, { 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{ "uniprot_canonical_ac": "P02462-1", "protein_name": "Collagen alpha-1(IV) chain", "gene_name": "COL4A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27658-1", "protein_name": "Collagen alpha-1(VIII) chain", "gene_name": "COL8A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08572-1", "protein_name": "Collagen alpha-2(IV) chain", "gene_name": "COL4A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25067-1", "protein_name": "Collagen alpha-2(VIII) chain", "gene_name": "COL8A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20849-1", "protein_name": "Collagen alpha-1(IX) chain", "gene_name": "COL9A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25940-1", "protein_name": "Collagen alpha-3(V) chain", "gene_name": "COL5A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01955-1", "protein_name": "Collagen alpha-3(IV) chain", "gene_name": "COL4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z4N8-1", "protein_name": "Prolyl 4-hydroxylase subunit 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"protein_name": "Collagen alpha-2(IX) chain", "gene_name": "COL9A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99715-1", "protein_name": "Collagen alpha-1(XII) chain", "gene_name": "COL12A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96P44-1", "protein_name": "Collagen alpha-1(XXI) chain", "gene_name": "COL21A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "A8TX70-1", "protein_name": "Collagen alpha-5(VI) chain", "gene_name": "COL6A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2UY09-1", "protein_name": "Collagen alpha-1(XXVIII) chain", "gene_name": "COL28A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05997-1", "protein_name": "Collagen alpha-2(V) chain", "gene_name": "COL5A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFW1-1", "protein_name": "Collagen alpha-1(XXII) chain", "gene_name": "COL22A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "A6NMZ7-1", "protein_name": "Collagen alpha-6(VI) chain", "gene_name": "COL6A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12111-1", "protein_name": "Collagen alpha-3(VI) chain", "gene_name": "COL6A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5TAT6-1", "protein_name": "Collagen alpha-1(XIII) chain", "gene_name": "COL13A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08123-1", "protein_name": "Collagen alpha-2(I) chain", "gene_name": "COL1A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P218-1", "protein_name": "Collagen alpha-1(XX) chain", "gene_name": "COL20A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12109-1", "protein_name": "Collagen alpha-1(VI) chain", "gene_name": "COL6A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02458-2", "protein_name": "Collagen alpha-1(II) chain", "gene_name": "COL2A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02388-1", "protein_name": "Collagen alpha-1(VII) chain", "gene_name": "COL7A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14050-1", "protein_name": "Collagen alpha-3(IX) chain", "gene_name": "COL9A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UMD9-1", "protein_name": "Collagen alpha-1(XVII) chain", "gene_name": "COL17A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXS0-1", "protein_name": "Collagen alpha-1(XXV) chain", "gene_name": "COL25A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23284-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase B", "gene_name": "PPIB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q03692-1", "protein_name": "Collagen alpha-1(X) chain", "gene_name": "COL10A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13497-1", "protein_name": "Bone morphogenetic protein 1", "gene_name": "BMP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NBJ5-1", "protein_name": "Procollagen galactosyltransferase 1", "gene_name": "COLGALT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYK4-1", "protein_name": "Procollagen galactosyltransferase 2", "gene_name": "COLGALT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00469-1", "protein_name": "Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2", "gene_name": "PLOD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02809-1", "protein_name": "Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1", "gene_name": "PLOD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13674-1", "protein_name": "Prolyl 4-hydroxylase subunit alpha-1", "gene_name": "P4HA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50454-1", "protein_name": "Serpin H1", "gene_name": "SERPINH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15072-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 3", "gene_name": "ADAMTS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WXS8-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 14", "gene_name": "ADAMTS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60568-1", "protein_name": "Multifunctional procollagen lysine hydroxylase and glycosyltransferase LH3", "gene_name": "PLOD3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39060-3", "protein_name": "Collagen alpha-1(XVIII) chain", "gene_name": "COL18A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15113-1", "protein_name": "Procollagen C-endopeptidase enhancer 1", "gene_name": "PCOLCE", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "O43897", "url": "https://www.uniprot.org/uniprotkb/O43897" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.6307276", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 67 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Human lysyl hydroxylase: purification to homogeneity, partial characterization and comparison of catalytic properties with those of a mutant enzyme from Ehlers-Danlos syndrome type VI fibroblasts.", "journal": "Collagen and related research", "date": "1981", "authors": "Turpeenniemi-Hujanen TM, Puistola U, Kivirikko KI", "reference": { "type": "PubMed", "id": "6809411", "url": "https://pubmed.ncbi.nlm.nih.gov/6809411" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O43897-1", "protein_name": "Tolloid-like protein 1", "gene_name": "TLL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02452-1", "protein_name": "Collagen alpha-1(I) chain", "gene_name": "COL1A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q17RW2-1", "protein_name": "Collagen alpha-1(XXIV) chain", "gene_name": "COL24A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKZ9-1", "protein_name": "Procollagen C-endopeptidase enhancer 2", "gene_name": "PCOLCE2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05707-1", "protein_name": "Collagen alpha-1(XIV) chain", "gene_name": "COL14A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39059-1", "protein_name": "Collagen alpha-1(XV) chain", "gene_name": "COL15A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53420-1", "protein_name": "Collagen alpha-4(IV) chain", "gene_name": "COL4A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IZC6-1", "protein_name": "Collagen alpha-1(XXVII) chain", "gene_name": "COL27A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86Y22-1", "protein_name": "Collagen alpha-1(XXIII) chain", "gene_name": "COL23A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07237-1", "protein_name": "Protein disulfide-isomerase", "gene_name": "P4HB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12107-1", "protein_name": "Collagen alpha-1(XI) chain", "gene_name": "COL11A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A83-1", "protein_name": "Collagen alpha-1(XXVI) chain", "gene_name": "COL26A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14993-1", "protein_name": "Collagen alpha-1(XIX) chain", "gene_name": "COL19A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q32P28-1", "protein_name": "Prolyl 3-hydroxylase 1", "gene_name": "P3H1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IVL5-1", "protein_name": "Prolyl 3-hydroxylase 2", "gene_name": "P3H2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15460-1", "protein_name": "Prolyl 4-hydroxylase subunit alpha-2", "gene_name": "P4HA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95450-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 2", "gene_name": "ADAMTS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12110-1", "protein_name": "Collagen alpha-2(VI) chain", "gene_name": "COL6A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14031-1", "protein_name": "Collagen alpha-6(IV) chain", "gene_name": "COL4A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20908-1", "protein_name": "Collagen alpha-1(V) chain", "gene_name": "COL5A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02462-1", "protein_name": "Collagen alpha-1(IV) chain", "gene_name": "COL4A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27658-1", "protein_name": "Collagen alpha-1(VIII) chain", "gene_name": "COL8A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08572-1", "protein_name": "Collagen alpha-2(IV) chain", "gene_name": "COL4A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25067-1", "protein_name": "Collagen alpha-2(VIII) chain", "gene_name": "COL8A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20849-1", "protein_name": "Collagen alpha-1(IX) chain", "gene_name": "COL9A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25940-1", "protein_name": "Collagen alpha-3(V) chain", "gene_name": "COL5A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01955-1", "protein_name": "Collagen alpha-3(IV) chain", "gene_name": "COL4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z4N8-1", "protein_name": "Prolyl 4-hydroxylase subunit alpha-3", "gene_name": "P4HA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75718-1", "protein_name": "Cartilage-associated protein", "gene_name": "CRTAP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IVL6-1", "protein_name": "Prolyl 3-hydroxylase 3", "gene_name": "P3H3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6L7-1", "protein_name": "Tolloid-like protein 2", "gene_name": "TLL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02461-1", "protein_name": "Collagen alpha-1(III) chain", "gene_name": "COL3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07092-1", "protein_name": "Collagen alpha-1(XVI) chain", "gene_name": "COL16A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13942-1", "protein_name": "Collagen alpha-2(XI) chain", "gene_name": "COL11A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29400-1", "protein_name": "Collagen alpha-5(IV) chain", "gene_name": "COL4A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14055-1", "protein_name": "Collagen alpha-2(IX) chain", "gene_name": "COL9A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99715-1", "protein_name": "Collagen alpha-1(XII) chain", "gene_name": "COL12A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96P44-1", "protein_name": "Collagen alpha-1(XXI) chain", "gene_name": "COL21A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "A8TX70-1", "protein_name": "Collagen alpha-5(VI) chain", "gene_name": "COL6A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2UY09-1", "protein_name": "Collagen alpha-1(XXVIII) chain", "gene_name": "COL28A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05997-1", "protein_name": "Collagen alpha-2(V) chain", "gene_name": "COL5A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFW1-1", "protein_name": "Collagen alpha-1(XXII) chain", "gene_name": "COL22A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "A6NMZ7-1", "protein_name": "Collagen alpha-6(VI) chain", "gene_name": "COL6A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12111-1", "protein_name": "Collagen alpha-3(VI) chain", "gene_name": "COL6A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5TAT6-1", "protein_name": "Collagen alpha-1(XIII) chain", "gene_name": "COL13A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08123-1", "protein_name": "Collagen alpha-2(I) chain", "gene_name": "COL1A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P218-1", "protein_name": "Collagen alpha-1(XX) chain", "gene_name": "COL20A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12109-1", "protein_name": "Collagen alpha-1(VI) chain", "gene_name": "COL6A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02458-2", "protein_name": "Collagen alpha-1(II) chain", "gene_name": "COL2A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02388-1", "protein_name": "Collagen alpha-1(VII) chain", "gene_name": "COL7A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14050-1", "protein_name": "Collagen alpha-3(IX) chain", "gene_name": "COL9A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UMD9-1", "protein_name": "Collagen alpha-1(XVII) chain", "gene_name": "COL17A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXS0-1", "protein_name": "Collagen alpha-1(XXV) chain", "gene_name": "COL25A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23284-1", "protein_name": "Peptidyl-prolyl 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[] } ] }, { "title": "The role of cis-trans isomerization of peptide bonds in the coil leads to and comes from triple helix conversion of collagen.", "journal": "European journal of biochemistry", "date": "1978", "authors": "Bachinger HP, Bruckner P, Timpl R, Engel J", "reference": { "type": "PubMed", "id": "710450", "url": "https://pubmed.ncbi.nlm.nih.gov/710450" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O43897-1", "protein_name": "Tolloid-like protein 1", "gene_name": "TLL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02452-1", "protein_name": "Collagen alpha-1(I) chain", "gene_name": "COL1A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q17RW2-1", "protein_name": "Collagen alpha-1(XXIV) chain", "gene_name": "COL24A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKZ9-1", "protein_name": "Procollagen C-endopeptidase enhancer 2", "gene_name": "PCOLCE2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05707-1", "protein_name": "Collagen alpha-1(XIV) chain", "gene_name": "COL14A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39059-1", "protein_name": "Collagen alpha-1(XV) chain", "gene_name": "COL15A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53420-1", "protein_name": "Collagen alpha-4(IV) chain", "gene_name": "COL4A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IZC6-1", "protein_name": "Collagen alpha-1(XXVII) chain", "gene_name": "COL27A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86Y22-1", "protein_name": "Collagen alpha-1(XXIII) chain", "gene_name": "COL23A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07237-1", "protein_name": "Protein disulfide-isomerase", "gene_name": "P4HB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12107-1", "protein_name": "Collagen alpha-1(XI) chain", "gene_name": "COL11A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A83-1", "protein_name": "Collagen alpha-1(XXVI) chain", "gene_name": "COL26A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14993-1", "protein_name": "Collagen alpha-1(XIX) chain", "gene_name": "COL19A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q32P28-1", "protein_name": "Prolyl 3-hydroxylase 1", "gene_name": "P3H1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IVL5-1", "protein_name": "Prolyl 3-hydroxylase 2", "gene_name": "P3H2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15460-1", "protein_name": "Prolyl 4-hydroxylase subunit alpha-2", "gene_name": "P4HA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95450-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 2", "gene_name": "ADAMTS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12110-1", "protein_name": "Collagen alpha-2(VI) chain", "gene_name": "COL6A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14031-1", "protein_name": "Collagen alpha-6(IV) chain", "gene_name": "COL4A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20908-1", "protein_name": "Collagen alpha-1(V) chain", "gene_name": "COL5A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02462-1", "protein_name": "Collagen alpha-1(IV) chain", "gene_name": "COL4A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27658-1", "protein_name": "Collagen alpha-1(VIII) chain", "gene_name": "COL8A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08572-1", "protein_name": "Collagen alpha-2(IV) chain", "gene_name": "COL4A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25067-1", "protein_name": "Collagen alpha-2(VIII) chain", "gene_name": "COL8A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20849-1", "protein_name": "Collagen alpha-1(IX) chain", "gene_name": "COL9A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25940-1", "protein_name": "Collagen alpha-3(V) chain", "gene_name": "COL5A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01955-1", "protein_name": "Collagen alpha-3(IV) chain", "gene_name": "COL4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z4N8-1", "protein_name": "Prolyl 4-hydroxylase subunit alpha-3", "gene_name": "P4HA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75718-1", "protein_name": "Cartilage-associated protein", "gene_name": "CRTAP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IVL6-1", "protein_name": "Prolyl 3-hydroxylase 3", "gene_name": "P3H3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6L7-1", "protein_name": "Tolloid-like protein 2", "gene_name": "TLL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02461-1", "protein_name": "Collagen alpha-1(III) chain", "gene_name": "COL3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07092-1", "protein_name": "Collagen alpha-1(XVI) chain", "gene_name": "COL16A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13942-1", "protein_name": "Collagen alpha-2(XI) chain", "gene_name": "COL11A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29400-1", "protein_name": "Collagen alpha-5(IV) chain", "gene_name": "COL4A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14055-1", "protein_name": "Collagen alpha-2(IX) chain", "gene_name": "COL9A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99715-1", "protein_name": "Collagen alpha-1(XII) chain", "gene_name": "COL12A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96P44-1", "protein_name": "Collagen alpha-1(XXI) chain", "gene_name": "COL21A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "A8TX70-1", "protein_name": "Collagen alpha-5(VI) chain", "gene_name": "COL6A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2UY09-1", "protein_name": "Collagen alpha-1(XXVIII) chain", "gene_name": "COL28A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05997-1", "protein_name": "Collagen alpha-2(V) chain", "gene_name": "COL5A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFW1-1", "protein_name": "Collagen alpha-1(XXII) chain", "gene_name": "COL22A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "A6NMZ7-1", "protein_name": "Collagen alpha-6(VI) chain", "gene_name": "COL6A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12111-1", "protein_name": "Collagen alpha-3(VI) chain", "gene_name": "COL6A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5TAT6-1", "protein_name": "Collagen alpha-1(XIII) chain", "gene_name": "COL13A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08123-1", "protein_name": "Collagen alpha-2(I) chain", "gene_name": "COL1A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P218-1", "protein_name": "Collagen alpha-1(XX) chain", "gene_name": "COL20A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12109-1", "protein_name": "Collagen alpha-1(VI) chain", "gene_name": "COL6A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02458-2", "protein_name": "Collagen alpha-1(II) chain", "gene_name": "COL2A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02388-1", "protein_name": "Collagen alpha-1(VII) chain", "gene_name": "COL7A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14050-1", "protein_name": "Collagen alpha-3(IX) chain", "gene_name": "COL9A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UMD9-1", "protein_name": "Collagen alpha-1(XVII) chain", "gene_name": "COL17A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXS0-1", "protein_name": "Collagen alpha-1(XXV) chain", "gene_name": "COL25A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23284-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase B", "gene_name": "PPIB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q03692-1", "protein_name": "Collagen alpha-1(X) chain", "gene_name": "COL10A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13497-1", "protein_name": "Bone morphogenetic protein 1", "gene_name": "BMP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NBJ5-1", "protein_name": "Procollagen galactosyltransferase 1", "gene_name": "COLGALT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYK4-1", "protein_name": "Procollagen galactosyltransferase 2", "gene_name": "COLGALT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00469-1", "protein_name": "Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2", "gene_name": "PLOD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02809-1", "protein_name": "Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1", "gene_name": "PLOD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13674-1", "protein_name": "Prolyl 4-hydroxylase subunit alpha-1", "gene_name": "P4HA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50454-1", "protein_name": "Serpin H1", "gene_name": "SERPINH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15072-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 3", "gene_name": "ADAMTS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WXS8-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 14", "gene_name": "ADAMTS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60568-1", "protein_name": "Multifunctional procollagen lysine hydroxylase and glycosyltransferase LH3", "gene_name": "PLOD3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39060-3", "protein_name": "Collagen alpha-1(XVIII) chain", "gene_name": "COL18A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15113-1", "protein_name": "Procollagen C-endopeptidase enhancer 1", "gene_name": "PCOLCE", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "O43897", "url": "https://www.uniprot.org/uniprotkb/O43897" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.710450", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 67 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { 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"n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Cloning and characterization of a novel human lysyl hydroxylase isoform highly expressed in pancreas and muscle.", "journal": "The Journal of biological chemistry", "date": "1997", "authors": "Valtavaara M, Papponen H, Pirttila AM, Hiltunen K, Helander H, Myllyla R", "reference": { "type": "PubMed", "id": "9054364", "url": "https://pubmed.ncbi.nlm.nih.gov/9054364" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O43897-1", "protein_name": "Tolloid-like protein 1", "gene_name": "TLL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02452-1", "protein_name": "Collagen alpha-1(I) chain", "gene_name": "COL1A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q17RW2-1", "protein_name": "Collagen alpha-1(XXIV) chain", "gene_name": "COL24A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKZ9-1", "protein_name": "Procollagen C-endopeptidase enhancer 2", "gene_name": "PCOLCE2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05707-1", "protein_name": "Collagen alpha-1(XIV) chain", "gene_name": "COL14A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39059-1", "protein_name": "Collagen alpha-1(XV) chain", "gene_name": "COL15A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53420-1", "protein_name": "Collagen alpha-4(IV) chain", "gene_name": "COL4A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IZC6-1", "protein_name": "Collagen alpha-1(XXVII) chain", "gene_name": "COL27A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86Y22-1", "protein_name": "Collagen alpha-1(XXIII) chain", "gene_name": "COL23A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07237-1", "protein_name": "Protein disulfide-isomerase", "gene_name": "P4HB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12107-1", "protein_name": "Collagen alpha-1(XI) chain", "gene_name": "COL11A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A83-1", "protein_name": "Collagen alpha-1(XXVI) chain", "gene_name": "COL26A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14993-1", "protein_name": "Collagen alpha-1(XIX) chain", "gene_name": "COL19A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q32P28-1", "protein_name": "Prolyl 3-hydroxylase 1", "gene_name": "P3H1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IVL5-1", "protein_name": "Prolyl 3-hydroxylase 2", "gene_name": "P3H2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15460-1", "protein_name": "Prolyl 4-hydroxylase subunit alpha-2", "gene_name": "P4HA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95450-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 2", "gene_name": "ADAMTS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12110-1", "protein_name": "Collagen alpha-2(VI) chain", "gene_name": "COL6A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14031-1", "protein_name": "Collagen alpha-6(IV) chain", "gene_name": "COL4A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20908-1", "protein_name": "Collagen alpha-1(V) chain", "gene_name": "COL5A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02462-1", "protein_name": "Collagen alpha-1(IV) chain", "gene_name": "COL4A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27658-1", "protein_name": "Collagen alpha-1(VIII) chain", "gene_name": "COL8A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08572-1", "protein_name": "Collagen alpha-2(IV) chain", "gene_name": "COL4A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25067-1", "protein_name": "Collagen alpha-2(VIII) chain", "gene_name": "COL8A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20849-1", "protein_name": "Collagen alpha-1(IX) chain", "gene_name": "COL9A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25940-1", "protein_name": "Collagen alpha-3(V) chain", "gene_name": "COL5A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01955-1", "protein_name": "Collagen alpha-3(IV) chain", "gene_name": "COL4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z4N8-1", "protein_name": "Prolyl 4-hydroxylase subunit alpha-3", "gene_name": "P4HA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75718-1", "protein_name": "Cartilage-associated protein", "gene_name": "CRTAP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IVL6-1", "protein_name": "Prolyl 3-hydroxylase 3", "gene_name": "P3H3", "tax_name": "Human" }, { "uniprot_canonical_ac": 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"tax_name": "Human" }, { "uniprot_canonical_ac": "A8TX70-1", "protein_name": "Collagen alpha-5(VI) chain", "gene_name": "COL6A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2UY09-1", "protein_name": "Collagen alpha-1(XXVIII) chain", "gene_name": "COL28A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05997-1", "protein_name": "Collagen alpha-2(V) chain", "gene_name": "COL5A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFW1-1", "protein_name": "Collagen alpha-1(XXII) chain", "gene_name": "COL22A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "A6NMZ7-1", "protein_name": "Collagen alpha-6(VI) chain", "gene_name": "COL6A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12111-1", "protein_name": "Collagen alpha-3(VI) chain", "gene_name": "COL6A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5TAT6-1", "protein_name": "Collagen alpha-1(XIII) chain", "gene_name": "COL13A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08123-1", "protein_name": "Collagen alpha-2(I) chain", "gene_name": "COL1A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P218-1", "protein_name": "Collagen alpha-1(XX) chain", "gene_name": "COL20A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12109-1", "protein_name": "Collagen alpha-1(VI) chain", "gene_name": "COL6A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02458-2", "protein_name": "Collagen alpha-1(II) chain", "gene_name": "COL2A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02388-1", "protein_name": "Collagen alpha-1(VII) chain", "gene_name": "COL7A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14050-1", "protein_name": "Collagen alpha-3(IX) chain", "gene_name": "COL9A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UMD9-1", "protein_name": "Collagen alpha-1(XVII) chain", "gene_name": "COL17A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXS0-1", "protein_name": "Collagen alpha-1(XXV) chain", "gene_name": "COL25A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23284-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase B", "gene_name": "PPIB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q03692-1", "protein_name": "Collagen alpha-1(X) chain", "gene_name": "COL10A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13497-1", "protein_name": "Bone morphogenetic protein 1", "gene_name": "BMP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NBJ5-1", "protein_name": "Procollagen galactosyltransferase 1", "gene_name": "COLGALT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYK4-1", "protein_name": "Procollagen galactosyltransferase 2", "gene_name": "COLGALT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00469-1", "protein_name": "Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2", "gene_name": "PLOD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02809-1", "protein_name": "Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1", "gene_name": "PLOD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13674-1", "protein_name": "Prolyl 4-hydroxylase subunit alpha-1", "gene_name": "P4HA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50454-1", "protein_name": "Serpin H1", "gene_name": "SERPINH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15072-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 3", "gene_name": "ADAMTS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WXS8-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 14", "gene_name": "ADAMTS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60568-1", "protein_name": "Multifunctional procollagen lysine hydroxylase and glycosyltransferase LH3", "gene_name": "PLOD3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39060-3", "protein_name": "Collagen alpha-1(XVIII) chain", "gene_name": "COL18A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15113-1", "protein_name": "Procollagen C-endopeptidase enhancer 1", "gene_name": "PCOLCE", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "O43897", "url": "https://www.uniprot.org/uniprotkb/O43897" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.9054364", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 67 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Protein disulfide isomerase acts as a molecular chaperone during the assembly of procollagen.", "journal": "The Journal of biological chemistry", "date": "1998", "authors": "Wilson R, Lees JF, Bulleid NJ", "reference": { "type": "PubMed", "id": "9545296", "url": "https://pubmed.ncbi.nlm.nih.gov/9545296" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O43897-1", "protein_name": "Tolloid-like protein 1", "gene_name": "TLL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02452-1", "protein_name": "Collagen alpha-1(I) chain", "gene_name": "COL1A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q17RW2-1", "protein_name": "Collagen alpha-1(XXIV) chain", "gene_name": "COL24A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKZ9-1", "protein_name": "Procollagen C-endopeptidase enhancer 2", "gene_name": "PCOLCE2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05707-1", "protein_name": "Collagen alpha-1(XIV) chain", "gene_name": "COL14A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39059-1", "protein_name": "Collagen alpha-1(XV) chain", "gene_name": "COL15A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53420-1", "protein_name": "Collagen alpha-4(IV) chain", "gene_name": "COL4A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IZC6-1", "protein_name": "Collagen alpha-1(XXVII) chain", "gene_name": "COL27A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86Y22-1", "protein_name": "Collagen alpha-1(XXIII) chain", "gene_name": "COL23A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07237-1", "protein_name": "Protein disulfide-isomerase", "gene_name": "P4HB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12107-1", "protein_name": "Collagen alpha-1(XI) chain", "gene_name": "COL11A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A83-1", "protein_name": "Collagen alpha-1(XXVI) chain", "gene_name": "COL26A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14993-1", "protein_name": "Collagen alpha-1(XIX) chain", "gene_name": "COL19A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q32P28-1", "protein_name": "Prolyl 3-hydroxylase 1", "gene_name": "P3H1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IVL5-1", "protein_name": "Prolyl 3-hydroxylase 2", "gene_name": "P3H2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15460-1", "protein_name": "Prolyl 4-hydroxylase subunit alpha-2", "gene_name": "P4HA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95450-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 2", "gene_name": "ADAMTS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12110-1", "protein_name": "Collagen alpha-2(VI) chain", "gene_name": "COL6A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14031-1", "protein_name": "Collagen alpha-6(IV) chain", "gene_name": "COL4A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20908-1", "protein_name": "Collagen alpha-1(V) chain", "gene_name": "COL5A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02462-1", "protein_name": "Collagen alpha-1(IV) chain", "gene_name": "COL4A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27658-1", "protein_name": "Collagen alpha-1(VIII) chain", "gene_name": "COL8A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08572-1", "protein_name": "Collagen alpha-2(IV) chain", "gene_name": "COL4A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25067-1", "protein_name": "Collagen alpha-2(VIII) chain", "gene_name": "COL8A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20849-1", "protein_name": "Collagen alpha-1(IX) chain", "gene_name": "COL9A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25940-1", "protein_name": "Collagen alpha-3(V) chain", "gene_name": "COL5A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01955-1", "protein_name": "Collagen alpha-3(IV) chain", "gene_name": "COL4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z4N8-1", "protein_name": "Prolyl 4-hydroxylase subunit alpha-3", "gene_name": "P4HA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75718-1", "protein_name": "Cartilage-associated protein", "gene_name": "CRTAP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IVL6-1", "protein_name": "Prolyl 3-hydroxylase 3", "gene_name": "P3H3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6L7-1", "protein_name": "Tolloid-like protein 2", "gene_name": "TLL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02461-1", "protein_name": "Collagen alpha-1(III) chain", "gene_name": "COL3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07092-1", "protein_name": "Collagen alpha-1(XVI) chain", "gene_name": "COL16A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13942-1", "protein_name": "Collagen alpha-2(XI) chain", "gene_name": "COL11A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29400-1", "protein_name": "Collagen alpha-5(IV) chain", "gene_name": "COL4A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14055-1", "protein_name": "Collagen alpha-2(IX) chain", "gene_name": "COL9A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99715-1", "protein_name": "Collagen alpha-1(XII) chain", "gene_name": "COL12A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96P44-1", "protein_name": "Collagen alpha-1(XXI) chain", "gene_name": "COL21A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "A8TX70-1", "protein_name": "Collagen alpha-5(VI) chain", "gene_name": "COL6A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2UY09-1", "protein_name": "Collagen alpha-1(XXVIII) chain", "gene_name": "COL28A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05997-1", "protein_name": "Collagen alpha-2(V) chain", "gene_name": "COL5A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFW1-1", "protein_name": "Collagen alpha-1(XXII) chain", "gene_name": "COL22A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "A6NMZ7-1", "protein_name": "Collagen alpha-6(VI) chain", "gene_name": "COL6A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12111-1", "protein_name": "Collagen alpha-3(VI) chain", "gene_name": "COL6A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5TAT6-1", "protein_name": "Collagen alpha-1(XIII) chain", "gene_name": "COL13A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08123-1", "protein_name": "Collagen alpha-2(I) chain", "gene_name": "COL1A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P218-1", "protein_name": "Collagen alpha-1(XX) chain", "gene_name": "COL20A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12109-1", "protein_name": "Collagen alpha-1(VI) chain", "gene_name": "COL6A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02458-2", "protein_name": "Collagen alpha-1(II) chain", "gene_name": "COL2A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02388-1", "protein_name": "Collagen alpha-1(VII) chain", "gene_name": "COL7A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14050-1", "protein_name": "Collagen alpha-3(IX) chain", "gene_name": "COL9A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UMD9-1", "protein_name": "Collagen alpha-1(XVII) chain", "gene_name": "COL17A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXS0-1", "protein_name": "Collagen alpha-1(XXV) chain", "gene_name": "COL25A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23284-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase B", "gene_name": "PPIB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q03692-1", "protein_name": "Collagen alpha-1(X) chain", "gene_name": "COL10A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13497-1", "protein_name": "Bone morphogenetic protein 1", "gene_name": "BMP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NBJ5-1", "protein_name": "Procollagen galactosyltransferase 1", "gene_name": "COLGALT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYK4-1", "protein_name": "Procollagen galactosyltransferase 2", "gene_name": "COLGALT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00469-1", "protein_name": "Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2", "gene_name": "PLOD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02809-1", "protein_name": "Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1", "gene_name": "PLOD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13674-1", "protein_name": "Prolyl 4-hydroxylase subunit alpha-1", "gene_name": "P4HA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50454-1", "protein_name": "Serpin H1", "gene_name": "SERPINH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15072-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 3", "gene_name": "ADAMTS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WXS8-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 14", "gene_name": "ADAMTS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60568-1", "protein_name": "Multifunctional procollagen lysine hydroxylase and glycosyltransferase LH3", "gene_name": "PLOD3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39060-3", "protein_name": "Collagen alpha-1(XVIII) chain", "gene_name": "COL18A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15113-1", "protein_name": "Procollagen C-endopeptidase enhancer 1", "gene_name": "PCOLCE", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "O43897", "url": "https://www.uniprot.org/uniprotkb/O43897" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.9545296", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 67 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { 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"Tolloid-like protein 1", "gene_name": "TLL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02452-1", "protein_name": "Collagen alpha-1(I) chain", "gene_name": "COL1A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q17RW2-1", "protein_name": "Collagen alpha-1(XXIV) chain", "gene_name": "COL24A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKZ9-1", "protein_name": "Procollagen C-endopeptidase enhancer 2", "gene_name": "PCOLCE2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05707-1", "protein_name": "Collagen alpha-1(XIV) chain", "gene_name": "COL14A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39059-1", "protein_name": "Collagen alpha-1(XV) chain", "gene_name": "COL15A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53420-1", "protein_name": "Collagen alpha-4(IV) chain", "gene_name": "COL4A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IZC6-1", "protein_name": "Collagen alpha-1(XXVII) chain", "gene_name": "COL27A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86Y22-1", "protein_name": "Collagen alpha-1(XXIII) chain", "gene_name": "COL23A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07237-1", "protein_name": "Protein disulfide-isomerase", "gene_name": "P4HB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12107-1", "protein_name": "Collagen alpha-1(XI) chain", "gene_name": "COL11A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A83-1", "protein_name": "Collagen alpha-1(XXVI) chain", "gene_name": "COL26A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14993-1", "protein_name": "Collagen alpha-1(XIX) chain", "gene_name": "COL19A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q32P28-1", "protein_name": "Prolyl 3-hydroxylase 1", "gene_name": "P3H1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IVL5-1", "protein_name": "Prolyl 3-hydroxylase 2", "gene_name": "P3H2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15460-1", "protein_name": "Prolyl 4-hydroxylase subunit alpha-2", "gene_name": "P4HA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95450-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 2", "gene_name": "ADAMTS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12110-1", "protein_name": "Collagen alpha-2(VI) chain", "gene_name": "COL6A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14031-1", "protein_name": "Collagen alpha-6(IV) chain", "gene_name": "COL4A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20908-1", "protein_name": "Collagen alpha-1(V) chain", "gene_name": "COL5A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02462-1", "protein_name": "Collagen alpha-1(IV) chain", "gene_name": "COL4A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27658-1", "protein_name": "Collagen alpha-1(VIII) chain", "gene_name": "COL8A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08572-1", "protein_name": "Collagen alpha-2(IV) chain", "gene_name": "COL4A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25067-1", "protein_name": "Collagen alpha-2(VIII) chain", "gene_name": "COL8A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20849-1", "protein_name": "Collagen alpha-1(IX) chain", "gene_name": "COL9A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25940-1", "protein_name": "Collagen alpha-3(V) chain", "gene_name": "COL5A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01955-1", "protein_name": "Collagen alpha-3(IV) chain", "gene_name": "COL4A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z4N8-1", "protein_name": "Prolyl 4-hydroxylase subunit alpha-3", "gene_name": "P4HA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75718-1", "protein_name": "Cartilage-associated protein", "gene_name": "CRTAP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IVL6-1", "protein_name": "Prolyl 3-hydroxylase 3", "gene_name": "P3H3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6L7-1", "protein_name": "Tolloid-like protein 2", "gene_name": "TLL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02461-1", "protein_name": "Collagen alpha-1(III) chain", "gene_name": "COL3A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07092-1", "protein_name": "Collagen alpha-1(XVI) chain", "gene_name": "COL16A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13942-1", "protein_name": "Collagen alpha-2(XI) chain", "gene_name": "COL11A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P29400-1", "protein_name": "Collagen alpha-5(IV) chain", "gene_name": "COL4A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14055-1", "protein_name": "Collagen alpha-2(IX) chain", "gene_name": "COL9A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99715-1", "protein_name": "Collagen alpha-1(XII) chain", "gene_name": "COL12A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96P44-1", "protein_name": "Collagen alpha-1(XXI) chain", "gene_name": "COL21A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "A8TX70-1", "protein_name": "Collagen alpha-5(VI) chain", "gene_name": "COL6A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2UY09-1", "protein_name": "Collagen alpha-1(XXVIII) chain", "gene_name": "COL28A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05997-1", "protein_name": "Collagen alpha-2(V) chain", "gene_name": "COL5A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFW1-1", "protein_name": "Collagen alpha-1(XXII) chain", "gene_name": "COL22A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "A6NMZ7-1", "protein_name": "Collagen alpha-6(VI) chain", "gene_name": "COL6A6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12111-1", "protein_name": "Collagen alpha-3(VI) chain", "gene_name": "COL6A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5TAT6-1", "protein_name": "Collagen alpha-1(XIII) chain", "gene_name": "COL13A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08123-1", "protein_name": "Collagen alpha-2(I) chain", "gene_name": "COL1A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P218-1", "protein_name": "Collagen alpha-1(XX) chain", "gene_name": "COL20A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12109-1", "protein_name": "Collagen alpha-1(VI) chain", "gene_name": "COL6A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02458-2", "protein_name": "Collagen alpha-1(II) chain", "gene_name": "COL2A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02388-1", "protein_name": "Collagen alpha-1(VII) chain", "gene_name": "COL7A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14050-1", "protein_name": "Collagen alpha-3(IX) chain", "gene_name": "COL9A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UMD9-1", "protein_name": "Collagen alpha-1(XVII) chain", "gene_name": "COL17A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXS0-1", "protein_name": "Collagen alpha-1(XXV) chain", "gene_name": "COL25A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23284-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase B", "gene_name": "PPIB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q03692-1", "protein_name": "Collagen alpha-1(X) chain", "gene_name": "COL10A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13497-1", "protein_name": "Bone morphogenetic protein 1", "gene_name": "BMP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NBJ5-1", "protein_name": "Procollagen galactosyltransferase 1", "gene_name": "COLGALT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYK4-1", "protein_name": "Procollagen galactosyltransferase 2", "gene_name": "COLGALT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00469-1", "protein_name": "Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2", "gene_name": "PLOD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02809-1", "protein_name": "Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1", "gene_name": "PLOD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13674-1", "protein_name": "Prolyl 4-hydroxylase subunit alpha-1", "gene_name": "P4HA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50454-1", "protein_name": "Serpin H1", "gene_name": "SERPINH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15072-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 3", "gene_name": "ADAMTS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WXS8-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 14", "gene_name": "ADAMTS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60568-1", "protein_name": "Multifunctional procollagen lysine hydroxylase and glycosyltransferase LH3", "gene_name": "PLOD3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39060-3", "protein_name": "Collagen alpha-1(XVIII) chain", "gene_name": "COL18A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15113-1", "protein_name": "Procollagen C-endopeptidase enhancer 1", "gene_name": "PCOLCE", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "O43897", "url": "https://www.uniprot.org/uniprotkb/O43897" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.9560306", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 67 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Primary structure, tissue distribution, and chromosomal localization of a novel isoform of lysyl hydroxylase (lysyl hydroxylase 3)", "journal": "The Journal of biological chemistry", "date": "1998", "authors": "Valtavaara M, Szpirer C, Szpirer J, Myllyla R", "reference": { "type": "PubMed", "id": "9582318", "url": "https://pubmed.ncbi.nlm.nih.gov/9582318" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O43897-1", "protein_name": "Tolloid-like protein 1", "gene_name": "TLL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02452-1", "protein_name": "Collagen alpha-1(I) chain", "gene_name": "COL1A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q17RW2-1", "protein_name": "Collagen alpha-1(XXIV) chain", "gene_name": "COL24A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKZ9-1", "protein_name": "Procollagen C-endopeptidase enhancer 2", "gene_name": "PCOLCE2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05707-1", "protein_name": "Collagen alpha-1(XIV) chain", "gene_name": "COL14A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39059-1", "protein_name": "Collagen alpha-1(XV) chain", "gene_name": "COL15A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53420-1", "protein_name": "Collagen alpha-4(IV) chain", "gene_name": "COL4A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IZC6-1", "protein_name": "Collagen alpha-1(XXVII) chain", "gene_name": "COL27A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86Y22-1", "protein_name": "Collagen alpha-1(XXIII) chain", "gene_name": "COL23A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07237-1", "protein_name": "Protein disulfide-isomerase", "gene_name": "P4HB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12107-1", "protein_name": "Collagen alpha-1(XI) chain", "gene_name": "COL11A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A83-1", "protein_name": "Collagen alpha-1(XXVI) chain", "gene_name": "COL26A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14993-1", "protein_name": "Collagen alpha-1(XIX) chain", "gene_name": "COL19A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q32P28-1", "protein_name": "Prolyl 3-hydroxylase 1", "gene_name": "P3H1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IVL5-1", "protein_name": "Prolyl 3-hydroxylase 2", "gene_name": "P3H2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15460-1", "protein_name": "Prolyl 4-hydroxylase subunit alpha-2", "gene_name": "P4HA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95450-1", "protein_name": "A disintegrin and metalloproteinase with thrombospondin motifs 2", "gene_name": "ADAMTS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12110-1", "protein_name": "Collagen alpha-2(VI) chain", "gene_name": "COL6A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14031-1", "protein_name": "Collagen alpha-6(IV) chain", "gene_name": "COL4A6", "tax_name": "Human" 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