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"count": 0 } ], "sort_fields": [] } ] }, { "title": "Identification and characterization of binding sites on S100A7, a participant in cancer and inflammation pathways.", "journal": "Biochemistry", "date": "2009", "authors": "Leon R, Murray JI, Cragg G, Farnell B, West NR, Pace TC, Watson PH, Bohne C, Boulanger MJ, Hof F", "reference": { "type": "PubMed", "id": "19810752", "url": "https://pubmed.ncbi.nlm.nih.gov/19810752" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P02788-1", "protein_name": "Lactotransferrin", "gene_name": "LTF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06702-1", "protein_name": "Protein S100-A9", "gene_name": "S100A9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86SG5-1", "protein_name": "Protein S100-A7A", "gene_name": "S100A7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05109-1", "protein_name": "Protein S100-A8", "gene_name": "S100A8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31151-1", 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"count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "O-GlcNAcylation/phosphorylation cycling at Ser10 controls both transcriptional activity and stability of delta-lactoferrin.", "journal": "The Journal of biological chemistry", "date": "2010", "authors": "Hardiville S, Hoedt E, Mariller C, Benaissa M, Pierce A", "reference": { "type": "PubMed", "id": "20404350", "url": "https://pubmed.ncbi.nlm.nih.gov/20404350" }, "referenced_glycans": [ { "glytoucan_ac": "G49108TO" } ], "referenced_proteins": [ { "uniprot_canonical_ac": "P02788-1", "protein_name": "Lactotransferrin", "gene_name": "LTF", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P02788", "url": "https://www.uniprot.org/uniprotkb/P02788" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": 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America", "date": "2012", "authors": "Madigan CA, Cheng TY, Layre E, Young DC, McConnell MJ, Debono CA, Murry JP, Wei JR, Barry CE 3rd, Rodriguez GM, Matsunaga I, Rubin EJ, Moody DB", "reference": { "type": "PubMed", "id": "22232695", "url": "https://pubmed.ncbi.nlm.nih.gov/22232695" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P02788-1", "protein_name": "Lactotransferrin", "gene_name": "LTF", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P02788", "url": "https://www.uniprot.org/uniprotkb/P02788" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.22232695", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ 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"count": 4 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 4 }, { "field": "exact_n_linked_sites", "count": 4 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "icn3d_view.label", "icn3d_view.url", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl", "mining_tool", "filter_code", "uniprot_canonical_ac" ] } ] }, { "title": "Primary structure of glycans isolated from human leucocyte lactotransferrin. 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Reported structure can be attached to the following: N-157, N-498", "icn3d_view": {}, "start_pos": 497, "start_aa": "Asn", "end_pos": 497, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn497", "evidence": [ { "id": "2390069", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/2390069" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "7774715", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/7774715" }, { "id": "7068558", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/7068558" }, { "id": "12151713", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/12151713" } ], "filter_code": "001000000000000000000.0000000.00010000000000.0010000.1110100000.000000000001000000.10000.01001", "uniprot_canonical_ac": "P02788-1" }, { "glytoucan_ac": "G11041DA", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "GlycoSuiteDB curation notes. Reported structure can be attached to the following: N-157, N-498", "icn3d_view": {}, "start_pos": 497, "start_aa": "Asn", "end_pos": 497, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn497", "evidence": [ { "id": "12151713", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/12151713" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "7068558", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/7068558" }, { "id": "7774715", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/7774715" }, { "id": "2390069", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/2390069" } ], "filter_code": "001000000000000000000.0000000.00010000000000.0010000.1110100000.010100000001011000.10000.01001", "uniprot_canonical_ac": "P02788-1" }, { "glytoucan_ac": "G17689DH", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "GlycoSuiteDB curation notes. Reported structure can be attached to the following: N-157, N-498", "icn3d_view": {}, "start_pos": 497, "start_aa": "Asn", "end_pos": 497, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn497", "evidence": [ { "id": "12151713", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/12151713" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "2390069", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/2390069" }, { "id": "7068558", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/7068558" }, { "id": "7774715", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/7774715" } ], "filter_code": "001000000000000000000.0000000.00010000000000.0010000.1110100000.000000000011101000.10000.01001", "uniprot_canonical_ac": "P02788-1" }, { "glytoucan_ac": "G33608TH", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "GlycoSuiteDB curation notes. 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Reported structure can be attached to the following: N-157, N-498", "icn3d_view": {}, "start_pos": 497, "start_aa": "Asn", "end_pos": 497, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn497", "evidence": [ { "id": "12151713", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/12151713" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "7068558", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/7068558" }, { "id": "7774715", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/7774715" }, { "id": "2390069", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/2390069" } ], "filter_code": "001000000000000000000.0000000.00010000000000.0010000.1110100000.000000000011111000.00001.01001", "uniprot_canonical_ac": "P02788-1" }, { "glytoucan_ac": "G56749GV", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "GlycoSuiteDB curation notes. Reported structure can be attached to the following: N-157, N-498", "icn3d_view": {}, "start_pos": 497, "start_aa": "Asn", "end_pos": 497, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn497", "evidence": [ { "id": "12151713", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/12151713" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "2390069", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/2390069" }, { "id": "7774715", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/7774715" }, { "id": "7068558", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/7068558" } ], "filter_code": "001000000000000000000.0000000.00010000000000.0010000.1110100000.010100000001111000.10000.01001", "uniprot_canonical_ac": "P02788-1" }, { "glytoucan_ac": "G74264KM", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "GlycoSuiteDB curation notes. 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Study and alignment of the cyanogen bromide fragments and characterization of N- and C-terminal domains.", "journal": "Biochim. Biophys. 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Reported structure can be attached to the following: N-157, N-498", "icn3d_view": {}, "start_pos": 156, "start_aa": "Asn", "end_pos": 156, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn156", "evidence": [ { "id": "12151713", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/12151713" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "7068558", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/7068558" }, { "id": "7774715", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/7774715" }, { "id": "2390069", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/2390069" } ], "filter_code": "001000000000000000000.0000000.00010000000000.0010000.1110100000.000000000001000000.10000.01001", "uniprot_canonical_ac": "P02788-1" }, { "glytoucan_ac": "G11041DA", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "GlycoSuiteDB curation notes. Reported structure can be attached to the following: N-157, N-498", "icn3d_view": {}, "start_pos": 156, "start_aa": "Asn", "end_pos": 156, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn156", "evidence": [ { "id": "2390069", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/2390069" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "7774715", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/7774715" }, { "id": "7068558", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/7068558" }, { "id": "12151713", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/12151713" } ], "filter_code": "001000000000000000000.0000000.00010000000000.0010000.1110100000.010100000001011000.10000.01001", "uniprot_canonical_ac": "P02788-1" }, { "glytoucan_ac": "G17689DH", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "GlycoSuiteDB curation notes. Reported structure can be attached to the following: N-157, N-498", "icn3d_view": {}, "start_pos": 156, "start_aa": "Asn", "end_pos": 156, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn156", "evidence": [ { "id": "7774715", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/7774715" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "7068558", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/7068558" }, { "id": "2390069", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/2390069" }, { "id": "12151713", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/12151713" } ], "filter_code": "001000000000000000000.0000000.00010000000000.0010000.1110100000.000000000011101000.10000.01001", "uniprot_canonical_ac": "P02788-1" }, { "glytoucan_ac": "G33608TH", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "GlycoSuiteDB curation notes. Reported structure can be attached to the following: N-157, N-498", "icn3d_view": {}, "start_pos": 156, "start_aa": "Asn", "end_pos": 156, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn156", "evidence": [ { "id": "12151713", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/12151713" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "7774715", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/7774715" }, { "id": "7068558", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/7068558" }, { "id": "2390069", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/2390069" } ], "filter_code": "001000000000000000000.0000000.00010000000000.0010000.1110100000.000000000001000000.10000.01001", "uniprot_canonical_ac": "P02788-1" }, { "glytoucan_ac": "G44444MB", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "GlycoSuiteDB curation notes. Reported structure can be attached to the following: N-157, N-498", "icn3d_view": {}, "start_pos": 156, "start_aa": "Asn", "end_pos": 156, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn156", "evidence": [ { "id": "2390069", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/2390069" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "7774715", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/7774715" }, { "id": "7068558", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/7068558" }, { "id": "12151713", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/12151713" } ], "filter_code": "001000000000000000000.0000000.00010000000000.0010000.1110100000.000000000011111000.00001.01001", "uniprot_canonical_ac": "P02788-1" }, { "glytoucan_ac": "G56749GV", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "GlycoSuiteDB curation notes. Reported structure can be attached to the following: N-157, N-498", "icn3d_view": {}, "start_pos": 156, "start_aa": "Asn", "end_pos": 156, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn156", "evidence": [ { "id": "7068558", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/7068558" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "7774715", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/7774715" }, { "id": "2390069", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/2390069" }, { "id": "12151713", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/12151713" } ], "filter_code": "001000000000000000000.0000000.00010000000000.0010000.1110100000.010100000001111000.10000.01001", "uniprot_canonical_ac": "P02788-1" }, { "glytoucan_ac": "G74264KM", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "GlycoSuiteDB curation notes. Reported structure can be attached to the following: N-157, N-498", "icn3d_view": {}, "start_pos": 156, "start_aa": "Asn", "end_pos": 156, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn156", "evidence": [ { "id": "7774715", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/7774715" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "7068558", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/7068558" }, { "id": "2390069", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/2390069" }, { "id": "12151713", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/12151713" } ], "filter_code": "001000000000000000000.0000000.00010000000000.0010000.1110000000.000000000001000000.10000.01001", "uniprot_canonical_ac": "P02788-1" }, { "glytoucan_ac": "G77252PU", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "GlycoSuiteDB curation notes. Reported structure can be attached to the following: N-157, N-498", "icn3d_view": {}, "start_pos": 156, "start_aa": "Asn", "end_pos": 156, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn156", "evidence": [ { "id": "12151713", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/12151713" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "2390069", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/2390069" }, { "id": "7774715", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/7774715" }, { "id": "7068558", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/7068558" } ], "filter_code": "001000000000000000000.0000000.00010000000000.0010000.1100100000.010000000001101000.10000.01001", "uniprot_canonical_ac": "P02788-1" }, { "glytoucan_ac": "G78059CC", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "GlycoSuiteDB curation notes. Reported structure can be attached to the following: N-157, N-498", "icn3d_view": {}, "start_pos": 156, "start_aa": "Asn", "end_pos": 156, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn156", "evidence": [ { "id": "2390069", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/2390069" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "7774715", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/7774715" }, { "id": "7068558", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/7068558" }, { "id": "12151713", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/12151713" } ], "filter_code": "001000000000000000000.0000000.00010000000000.0100000.1110000000.010100000001111000.10000.01001", "uniprot_canonical_ac": "P02788-1" }, { "glytoucan_ac": "G84467IZ", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "GlycoSuiteDB curation notes. Reported structure can be attached to the following: N-157, N-498", "icn3d_view": {}, "start_pos": 156, "start_aa": "Asn", "end_pos": 156, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn156", "evidence": [ { "id": "7774715", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/7774715" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "7068558", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/7068558" }, { "id": "2390069", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/2390069" }, { "id": "12151713", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/12151713" } ], "filter_code": "001000000000000000000.0000000.00010000000000.0010000.1100100000.010100000001111000.10000.01001", "uniprot_canonical_ac": "P02788-1" }, { "glytoucan_ac": "G90348RI", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "GlycoSuiteDB curation notes. Reported structure can be attached to the following: N-157, N-498", "icn3d_view": {}, "start_pos": 156, "start_aa": "Asn", "end_pos": 156, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn156", "evidence": [ { "id": "12151713", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/12151713" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "2390069", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/2390069" }, { "id": "7068558", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/7068558" }, { "id": "7774715", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/7774715" } ], "filter_code": "001000000000000000000.0000000.00010000000000.0010000.1110100000.000000000001000000.10000.01001", "uniprot_canonical_ac": "P02788-1" }, { "glytoucan_ac": "G93284HQ", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "GlycoSuiteDB curation notes. Reported structure can be attached to the following: N-157, N-498", "icn3d_view": {}, "start_pos": 156, "start_aa": "Asn", "end_pos": 156, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn156", "evidence": [ { "id": "12151713", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/12151713" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "2390069", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/2390069" }, { "id": "7068558", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/7068558" }, { "id": "7774715", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/7774715" } ], "filter_code": "001000000000000000000.0000000.00010000000000.0100000.1100100000.010000000001100000.00001.01001", "uniprot_canonical_ac": "P02788-1" }, { "glytoucan_ac": "G07162IJ", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "GlycoSuiteDB curation notes. Reported structure can be attached to the following: N-157, N-498", "icn3d_view": {}, "start_pos": 497, "start_aa": "Asn", "end_pos": 497, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn497", "evidence": [ { "id": "2390069", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/2390069" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "7774715", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/7774715" }, { "id": "7068558", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/7068558" }, { "id": "12151713", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/12151713" } ], "filter_code": "001000000000000000000.0000000.00010000000000.0010000.1110100000.000000000001000000.10000.01001", "uniprot_canonical_ac": "P02788-1" }, { "glytoucan_ac": "G11041DA", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "GlycoSuiteDB curation notes. Reported structure can be attached to the following: N-157, N-498", "icn3d_view": {}, "start_pos": 497, "start_aa": "Asn", "end_pos": 497, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn497", "evidence": [ { "id": "12151713", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/12151713" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "7068558", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/7068558" }, { "id": "7774715", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/7774715" }, { "id": "2390069", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/2390069" } ], "filter_code": "001000000000000000000.0000000.00010000000000.0010000.1110100000.010100000001011000.10000.01001", "uniprot_canonical_ac": "P02788-1" }, { "glytoucan_ac": "G17689DH", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "GlycoSuiteDB curation notes. Reported structure can be attached to the following: N-157, N-498", "icn3d_view": {}, "start_pos": 497, "start_aa": "Asn", "end_pos": 497, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn497", "evidence": [ { "id": "12151713", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/12151713" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "2390069", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/2390069" }, { "id": "7068558", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/7068558" }, { "id": "7774715", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/7774715" } ], "filter_code": "001000000000000000000.0000000.00010000000000.0010000.1110100000.000000000011101000.10000.01001", "uniprot_canonical_ac": "P02788-1" }, { "glytoucan_ac": "G33608TH", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "GlycoSuiteDB curation notes. 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Reported structure can be attached to the following: N-157, N-498", "icn3d_view": {}, "start_pos": 156, "start_aa": "Asn", "end_pos": 156, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn156", "evidence": [ { "id": "12151713", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/12151713" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "2390069", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/2390069" }, { "id": "7774715", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/7774715" }, { "id": "7068558", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/7068558" } ], "filter_code": "001000000000000000000.0000000.00010000000000.0010000.1100100000.010000000001101000.10000.01001", "uniprot_canonical_ac": "P02788-1" }, { "glytoucan_ac": "G78059CC", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "GlycoSuiteDB curation notes. Reported structure can be attached to the following: N-157, N-498", "icn3d_view": {}, "start_pos": 156, "start_aa": "Asn", "end_pos": 156, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn156", "evidence": [ { "id": "2390069", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/2390069" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "7774715", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/7774715" }, { "id": "7068558", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/7068558" }, { "id": "12151713", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/12151713" } ], "filter_code": "001000000000000000000.0000000.00010000000000.0100000.1110000000.010100000001111000.10000.01001", "uniprot_canonical_ac": "P02788-1" }, { "glytoucan_ac": "G84467IZ", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "GlycoSuiteDB curation notes. Reported structure can be attached to the following: N-157, N-498", "icn3d_view": {}, "start_pos": 156, "start_aa": "Asn", "end_pos": 156, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn156", "evidence": [ { "id": "7774715", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/7774715" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "7068558", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/7068558" }, { "id": "2390069", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/2390069" }, { "id": "12151713", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/12151713" } ], "filter_code": "001000000000000000000.0000000.00010000000000.0010000.1100100000.010100000001111000.10000.01001", "uniprot_canonical_ac": "P02788-1" }, { "glytoucan_ac": "G90348RI", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "GlycoSuiteDB curation notes. Reported structure can be attached to the following: N-157, N-498", "icn3d_view": {}, "start_pos": 156, "start_aa": "Asn", "end_pos": 156, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn156", "evidence": [ { "id": "12151713", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/12151713" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "2390069", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/2390069" }, { "id": "7068558", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/7068558" }, { "id": "7774715", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/7774715" } ], "filter_code": "001000000000000000000.0000000.00010000000000.0010000.1110100000.000000000001000000.10000.01001", "uniprot_canonical_ac": "P02788-1" }, { "glytoucan_ac": "G93284HQ", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "GlycoSuiteDB curation notes. Reported structure can be attached to the following: N-157, N-498", "icn3d_view": {}, "start_pos": 156, "start_aa": "Asn", "end_pos": 156, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn156", "evidence": [ { "id": "12151713", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/12151713" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "2390069", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/2390069" }, { "id": "7068558", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/7068558" }, { "id": "7774715", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/7774715" } ], "filter_code": "001000000000000000000.0000000.00010000000000.0100000.1100100000.010000000001100000.00001.01001", "uniprot_canonical_ac": "P02788-1" }, { "glytoucan_ac": "G07162IJ", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "GlycoSuiteDB curation notes. Reported structure can be attached to the following: N-157, N-498", "icn3d_view": {}, "start_pos": 497, "start_aa": "Asn", "end_pos": 497, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn497", "evidence": [ { "id": "2390069", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/2390069" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "7774715", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/7774715" }, { "id": "7068558", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/7068558" }, { "id": "12151713", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/12151713" } ], "filter_code": "001000000000000000000.0000000.00010000000000.0010000.1110100000.000000000001000000.10000.01001", "uniprot_canonical_ac": "P02788-1" }, { "glytoucan_ac": "G11041DA", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "GlycoSuiteDB curation notes. Reported structure can be attached to the following: N-157, N-498", "icn3d_view": {}, "start_pos": 497, "start_aa": "Asn", "end_pos": 497, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn497", "evidence": [ { "id": "12151713", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/12151713" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "7068558", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/7068558" }, { "id": "7774715", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/7774715" }, { "id": "2390069", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/2390069" } ], "filter_code": "001000000000000000000.0000000.00010000000000.0010000.1110100000.010100000001011000.10000.01001", "uniprot_canonical_ac": "P02788-1" }, { "glytoucan_ac": "G17689DH", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "GlycoSuiteDB curation notes. Reported structure can be attached to the following: N-157, N-498", "icn3d_view": {}, "start_pos": 497, "start_aa": "Asn", "end_pos": 497, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn497", "evidence": [ { "id": "12151713", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/12151713" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "2390069", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/2390069" }, { "id": "7068558", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/7068558" }, { "id": "7774715", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/7774715" } ], "filter_code": "001000000000000000000.0000000.00010000000000.0010000.1110100000.000000000011101000.10000.01001", "uniprot_canonical_ac": "P02788-1" }, { "glytoucan_ac": "G33608TH", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "GlycoSuiteDB curation notes. Reported structure can be attached to the following: N-157, N-498", "icn3d_view": {}, "start_pos": 497, "start_aa": "Asn", "end_pos": 497, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn497", "evidence": [ { "id": "2390069", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/2390069" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "7068558", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/7068558" }, { "id": "7774715", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/7774715" }, { "id": "12151713", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/12151713" } ], "filter_code": "001000000000000000000.0000000.00010000000000.0010000.1110100000.000000000001000000.10000.01001", "uniprot_canonical_ac": "P02788-1" }, { "glytoucan_ac": "G44444MB", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "GlycoSuiteDB curation notes. Reported structure can be attached to the following: N-157, N-498", "icn3d_view": {}, "start_pos": 497, "start_aa": "Asn", "end_pos": 497, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn497", "evidence": [ { "id": "12151713", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/12151713" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "7068558", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/7068558" }, { "id": "7774715", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/7774715" }, { "id": "2390069", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/2390069" } ], "filter_code": "001000000000000000000.0000000.00010000000000.0010000.1110100000.000000000011111000.00001.01001", "uniprot_canonical_ac": "P02788-1" }, { "glytoucan_ac": "G56749GV", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "GlycoSuiteDB curation notes. Reported structure can be attached to the following: N-157, N-498", "icn3d_view": {}, "start_pos": 497, "start_aa": "Asn", "end_pos": 497, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn497", "evidence": [ { "id": "12151713", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/12151713" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "2390069", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/2390069" }, { "id": "7774715", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/7774715" }, { "id": "7068558", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/7068558" } ], "filter_code": "001000000000000000000.0000000.00010000000000.0010000.1110100000.010100000001111000.10000.01001", "uniprot_canonical_ac": "P02788-1" }, { "glytoucan_ac": "G74264KM", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "GlycoSuiteDB curation notes. Reported structure can be attached to the following: N-157, N-498", "icn3d_view": {}, "start_pos": 497, "start_aa": "Asn", "end_pos": 497, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn497", "evidence": [ { "id": "12151713", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/12151713" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "2390069", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/2390069" }, { "id": "7068558", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/7068558" }, { "id": "7774715", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/7774715" } ], "filter_code": "001000000000000000000.0000000.00010000000000.0010000.1110000000.000000000001000000.10000.01001", "uniprot_canonical_ac": "P02788-1" }, { "glytoucan_ac": "G77252PU", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "GlycoSuiteDB curation notes. Reported structure can be attached to the following: N-157, N-498", "icn3d_view": {}, "start_pos": 497, "start_aa": "Asn", "end_pos": 497, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn497", "evidence": [ { "id": "7068558", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/7068558" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "7774715", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/7774715" }, { "id": "2390069", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/2390069" }, { "id": "12151713", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/12151713" } ], "filter_code": "001000000000000000000.0000000.00010000000000.0010000.1100100000.010000000001101000.10000.01001", "uniprot_canonical_ac": "P02788-1" }, { "glytoucan_ac": "G78059CC", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "GlycoSuiteDB curation notes. Reported structure can be attached to the following: N-157, N-498", "icn3d_view": {}, "start_pos": 497, "start_aa": "Asn", "end_pos": 497, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn497", "evidence": [ { "id": "12151713", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/12151713" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "7068558", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/7068558" }, { "id": "7774715", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/7774715" }, { "id": "2390069", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/2390069" } ], "filter_code": "001000000000000000000.0000000.00010000000000.0100000.1110000000.010100000001111000.10000.01001", "uniprot_canonical_ac": "P02788-1" }, { "glytoucan_ac": "G84467IZ", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "GlycoSuiteDB curation notes. Reported structure can be attached to the following: N-157, N-498", "icn3d_view": {}, "start_pos": 497, "start_aa": "Asn", "end_pos": 497, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn497", "evidence": [ { "id": "12151713", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/12151713" }, { "id": "GLY_000040", "database": "UniCarbKB", "url": "http://data.glygen.org/GLY_000040" }, { "id": "2390069", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/2390069" }, { "id": "7068558", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/7068558" }, { "id": "7774715", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/7774715" } ], "filter_code": "001000000000000000000.0000000.00010000000000.0010000.1100100000.010100000001111000.10000.01001", "uniprot_canonical_ac": "P02788-1" }, { "glytoucan_ac": "G90348RI", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported_with_glycan", "site_category_dict": { "reported_with_glycan": true }, "site_seq": "N", "relation": "attached", "comment": "GlycoSuiteDB curation notes. 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Biol. Chem.", "date": "1994", "authors": "Mann D M, Romm E, Migliorini M", "reference": { "type": "PubMed", "id": "8089135", "url": "https://pubmed.ncbi.nlm.nih.gov/8089135" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P02788-1", "protein_name": "Lactotransferrin", "gene_name": "LTF", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P02788", "url": "https://www.uniprot.org/uniprotkb/P02788" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.8089135", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Structure of the recombinant N-terminal lobe of human lactoferrin at 2.0 A resolution.", "journal": "J. 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", 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"field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Expression, localization, structural, and functional characterization of pFGE, the paralog of the Calpha-formylglycine-generating enzyme.", "journal": "The Journal of biological chemistry", "date": "2005", "authors": "Mariappan M, Preusser-Kunze A, Balleininger M, Eiselt N, Schmidt B, Gande SL, Wenzel D, Dierks T, von Figura K", "reference": { "type": "PubMed", "id": "15708861", "url": "https://pubmed.ncbi.nlm.nih.gov/15708861" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8NBK3-1", "protein_name": "Formylglycine-generating enzyme", "gene_name": "SUMF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08842-1", "protein_name": "Steryl-sulfatase", "gene_name": "STS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51689-1", "protein_name": "Arylsulfatase D", "gene_name": "ARSD", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6UWY0-1", "protein_name": "Arylsulfatase K", "gene_name": "ARSK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5FYB1-1", "protein_name": "Arylsulfatase I", "gene_name": "ARSI", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5FYA8-1", "protein_name": "Arylsulfatase H", "gene_name": "ARSH", "tax_name": "Human" }, { "uniprot_canonical_ac": "P54793-1", "protein_name": "Arylsulfatase F", "gene_name": "ARSF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EG1-1", "protein_name": "Arylsulfatase G", "gene_name": "ARSG", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5FYB0-1", "protein_name": "Arylsulfatase J", "gene_name": "ARSJ", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15289-1", "protein_name": "Arylsulfatase A", "gene_name": "ARSA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15848-1", "protein_name": "Arylsulfatase B", "gene_name": "ARSB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51690-1", "protein_name": "Arylsulfatase L", "gene_name": "ARSL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NBJ7-1", "protein_name": "Inactive C-alpha-formylglycine-generating enzyme 2", "gene_name": "SUMF2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q8NBK3", "url": 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"sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Molecular basis for multiple sulfatase deficiency and mechanism for formylglycine generation of the human formylglycine-generating enzyme.", "journal": "Cell", "date": "2005", "authors": "Dierks T, Dickmanns A, Preusser-Kunze A, Schmidt B, Mariappan M, von Figura K, Ficner R, Rudolph MG", "reference": { "type": "PubMed", "id": "15907468", "url": "https://pubmed.ncbi.nlm.nih.gov/15907468" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8NBK3-1", "protein_name": "Formylglycine-generating enzyme", "gene_name": "SUMF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q8NBK3", "url": "https://www.uniprot.org/uniprotkb/Q8NBK3" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "reported", "site_category_dict": { "reported": true }, "site_seq": 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"protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_n_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "icn3d_view.label", "icn3d_view.url", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl", "filter_code", "uniprot_canonical_ac" ] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_n_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "icn3d_view.label", "icn3d_view.url", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl", "filter_code", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Sulphatase activities are regulated by the interaction of sulphatase-modifying factor 1 with SUMF2.", "journal": "EMBO Rep.", "date": "2005", "authors": "Zito E, Fraldi A, Pepe S, Annunziata I, Kobinger G, Di Natale P, Ballabio A, Cosma MP", "reference": { "type": "PubMed", "id": "15962010", "url": "https://pubmed.ncbi.nlm.nih.gov/15962010" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8NBK3-1", "protein_name": "Formylglycine-generating enzyme", "gene_name": "SUMF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08842-1", "protein_name": "Steryl-sulfatase", "gene_name": "STS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51689-1", "protein_name": "Arylsulfatase D", "gene_name": "ARSD", "tax_name": "Human" }, { 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"Arylsulfatase L", "gene_name": "ARSL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NBJ7-1", "protein_name": "Inactive C-alpha-formylglycine-generating enzyme 2", "gene_name": "SUMF2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q8NBK3", "url": "https://www.uniprot.org/uniprotkb/Q8NBK3" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 156, "end_pos": 156, "sequence_org": "C", "sequence_mut": "A", "comment": "Abolishes interaction with and inhibition of SUMF1. Can still form homodimers.", "evidence": [ { "database": "UniProtKB", "id": "Q8NBJ7", "url": "https://www.uniprot.org/uniprotkb/Q8NBJ7" }, { "database": "PubMed", "id": "15962010", "url": "https://pubmed.ncbi.nlm.nih.gov/15962010" } ], "uniprot_canonical_ac": "Q8NBJ7-1" }, { "start_pos": 290, "end_pos": 290, "sequence_org": "C", "sequence_mut": "A", "comment": "Abolishes interaction with and inhibition of SUMF1. Can still form homodimers.", "evidence": [ { "database": "UniProtKB", "id": "Q8NBJ7", "url": "https://www.uniprot.org/uniprotkb/Q8NBJ7" }, { "database": "PubMed", "id": "15962010", "url": "https://pubmed.ncbi.nlm.nih.gov/15962010" } ], "uniprot_canonical_ac": "Q8NBJ7-1" } ], "record_id": "pubmed.15962010", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 13 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", 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"count": 0 } ], "sort_fields": [] } ] }, { "title": "A general binding mechanism for all human sulfatases by the formylglycine-generating enzyme.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2006", "authors": "Roeser D, Preusser-Kunze A, Schmidt B, Gasow K, Wittmann JG, Dierks T, von Figura K, Rudolph MG", "reference": { "type": "PubMed", "id": "16368756", "url": "https://pubmed.ncbi.nlm.nih.gov/16368756" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8NBK3-1", "protein_name": "Formylglycine-generating enzyme", "gene_name": "SUMF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08842-1", "protein_name": "Steryl-sulfatase", "gene_name": "STS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51689-1", "protein_name": "Arylsulfatase D", "gene_name": "ARSD", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6UWY0-1", "protein_name": "Arylsulfatase K", "gene_name": "ARSK", "tax_name": 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promotes tumorous cell growth and migration and is correlated with the immune status of patients with glioma.", "journal": "Aging", "date": "2024-03-07", "authors": "Zhang Ping, Liu Zhao, Wang Yu-Yu, Luo Hui-Jiu, Yang Chao-Zhi, Shen Hao, Wu Hai-Tao, Li Ju-Hang, Zhao Hong-Xin, Ran Qi-Shan", "reference": { "type": "PubMed", "id": "38460946", "url": "https://pubmed.ncbi.nlm.nih.gov/38460946" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8NBK3-1", "protein_name": "Formylglycine-generating enzyme", "gene_name": "SUMF1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q8NBK3", "url": "https://www.uniprot.org/uniprotkb/Q8NBK3" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.38460946", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": 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"Q96EG1-1", "protein_name": "Arylsulfatase G", "gene_name": "ARSG", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5FYB0-1", "protein_name": "Arylsulfatase J", "gene_name": "ARSJ", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15289-1", "protein_name": "Arylsulfatase A", "gene_name": "ARSA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15848-1", "protein_name": "Arylsulfatase B", "gene_name": "ARSB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51690-1", "protein_name": "Arylsulfatase L", "gene_name": "ARSL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NBJ7-1", "protein_name": "Inactive C-alpha-formylglycine-generating enzyme 2", "gene_name": "SUMF2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q8NBK3", "url": "https://www.uniprot.org/uniprotkb/Q8NBK3" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": 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"table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Identification and characterization of a human tRNA-specific adenosine deaminase related to the ADAR family of pre-mRNA editing enzymes.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "1999", "authors": "Maas S, Gerber AP, Rich A", "reference": { "type": "PubMed", "id": "10430867", "url": "https://pubmed.ncbi.nlm.nih.gov/10430867" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O14717-1", "protein_name": "tRNA (cytosine(38)-C(5))-methyltransferase", "gene_name": "TRDMT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BT7-1", "protein_name": "tRNA (carboxymethyluridine(34)-5-O)-methyltransferase ALKBH8", "gene_name": "ALKBH8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UI30-1", "protein_name": "Multifunctional methyltransferase subunit TRM112-like protein", "gene_name": "TRMT112", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08J23-1", "protein_name": "RNA cytosine C(5)-methyltransferase NSUN2", "gene_name": "NSUN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZE2-1", "protein_name": "tRNA pseudouridine(38/39) synthase", "gene_name": "PUS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96PZ0-1", "protein_name": "Pseudouridylate synthase 7 homolog", "gene_name": "PUS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H974-1", "protein_name": "Queuine tRNA-ribosyltransferase accessory subunit 2", "gene_name": "QTRT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NWX6-1", "protein_name": "Probable tRNA(His) guanylyltransferase", "gene_name": "THG1L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5VV42-1", "protein_name": "Threonylcarbamoyladenosine tRNA methylthiotransferase", "gene_name": "CDKAL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14657-1", "protein_name": "EKC/KEOPS complex subunit LAGE3", "gene_name": "LAGE3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P272-1", "protein_name": "Probable tRNA methyltransferase 9B", "gene_name": "TRMT9B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2VPK5-1", "protein_name": "Cytoplasmic tRNA 2-thiolation protein 2", "gene_name": "CTU2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z7A3-1", "protein_name": "Cytoplasmic tRNA 2-thiolation protein 1", "gene_name": "CTU1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTM9-1", "protein_name": "Ubiquitin-related modifier 1", "gene_name": "URM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NXH9-1", "protein_name": "tRNA (guanine(26)-N(2))-dimethyltransferase", "gene_name": "TRMT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z4G4-1", "protein_name": "tRNA (guanine(10)-N(2))-methyltransferase TRMT11", "gene_name": "TRMT11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EY9-1", "protein_name": "tRNA-specific adenosine-34 deaminase regulatory subunit ADAT3", "gene_name": "ADAT3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXV9-1", "protein_name": "EKC/KEOPS complex subunit GON7", "gene_name": "GON7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UET6-1", "protein_name": "tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase", "gene_name": "FTSJ1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UJA5-1", "protein_name": "tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6", "gene_name": "TRMT6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96S44-1", "protein_name": "EKC/KEOPS complex subunit TP53RK", "gene_name": "TP53RK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H3H1-1", "protein_name": "tRNA dimethylallyltransferase", "gene_name": "TRIT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPF4-1", "protein_name": "tRNA N6-adenosine threonylcarbamoyltransferase", "gene_name": "OSGEP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07814-1", "protein_name": "Bifunctional glutamate/proline--tRNA ligase", "gene_name": "EPRS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3C4-1", "protein_name": "EKC/KEOPS complex subunit TPRKB", "gene_name": "TPRKB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5T6V5-1", "protein_name": "Queuosine 5'-phosphate N-glycosylase/hydrolase", "gene_name": "QNG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXR0-1", "protein_name": "Queuine tRNA-ribosyltransferase catalytic subunit 1", "gene_name": "QTRT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96FX7-1", "protein_name": "tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A", "gene_name": "TRMT61A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TBZ6-1", "protein_name": "tRNA methyltransferase 10 homolog A", "gene_name": "TRMT10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYL2-1", "protein_name": "Probable tRNA (uracil-O(2)-)-methyltransferase", "gene_name": "TRMT44", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBP6-1", "protein_name": "tRNA (guanine-N(7)-)-methyltransferase", "gene_name": "METTL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TEA1-1", "protein_name": "tRNA (cytosine(72)-C(5))-methyltransferase NSUN6", "gene_name": "NSUN6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NX74-1", "protein_name": "tRNA-dihydrouridine(20) synthase [NAD(P)+]-like", "gene_name": "DUS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57081-1", "protein_name": "tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit WDR4", "gene_name": "WDR4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6YHU6-1", "protein_name": "tRNA (32-2'-O)-methyltransferase regulator THADA", "gene_name": "THADA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NUP7-1", "protein_name": "tRNA:m(4)X modification enzyme TRM13 homolog", "gene_name": "TRMT13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUB4-1", "protein_name": "tRNA-specific adenosine deaminase 1", "gene_name": "ADAT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z6V5-1", "protein_name": "tRNA-specific adenosine-34 deaminase catalytic subunit ADAT2", "gene_name": "ADAT2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "O14717", "url": "https://www.uniprot.org/uniprotkb/O14717" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.10430867", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 38 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The human tRNA(m(2)(2)G(26))dimethyltransferase: functional expression and characterization of a cloned hTRM1 gene.", "journal": "Nucleic acids research", "date": "2000", "authors": "Liu J, Straby KB", "reference": { "type": "PubMed", "id": "10982862", "url": "https://pubmed.ncbi.nlm.nih.gov/10982862" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O14717-1", "protein_name": "tRNA (cytosine(38)-C(5))-methyltransferase", "gene_name": "TRDMT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BT7-1", "protein_name": "tRNA (carboxymethyluridine(34)-5-O)-methyltransferase ALKBH8", "gene_name": "ALKBH8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UI30-1", "protein_name": "Multifunctional methyltransferase subunit TRM112-like protein", "gene_name": "TRMT112", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08J23-1", "protein_name": "RNA cytosine C(5)-methyltransferase NSUN2", "gene_name": "NSUN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZE2-1", "protein_name": "tRNA pseudouridine(38/39) synthase", "gene_name": "PUS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96PZ0-1", "protein_name": "Pseudouridylate synthase 7 homolog", "gene_name": "PUS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H974-1", "protein_name": "Queuine tRNA-ribosyltransferase accessory subunit 2", "gene_name": "QTRT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NWX6-1", "protein_name": "Probable tRNA(His) guanylyltransferase", "gene_name": "THG1L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5VV42-1", "protein_name": "Threonylcarbamoyladenosine tRNA methylthiotransferase", "gene_name": "CDKAL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14657-1", "protein_name": "EKC/KEOPS complex subunit LAGE3", "gene_name": "LAGE3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P272-1", "protein_name": "Probable tRNA methyltransferase 9B", "gene_name": "TRMT9B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2VPK5-1", "protein_name": "Cytoplasmic tRNA 2-thiolation protein 2", "gene_name": "CTU2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z7A3-1", "protein_name": "Cytoplasmic tRNA 2-thiolation protein 1", "gene_name": "CTU1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTM9-1", "protein_name": "Ubiquitin-related modifier 1", "gene_name": "URM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NXH9-1", "protein_name": "tRNA (guanine(26)-N(2))-dimethyltransferase", "gene_name": "TRMT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z4G4-1", "protein_name": "tRNA (guanine(10)-N(2))-methyltransferase TRMT11", "gene_name": "TRMT11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EY9-1", "protein_name": "tRNA-specific adenosine-34 deaminase regulatory subunit ADAT3", "gene_name": "ADAT3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXV9-1", "protein_name": "EKC/KEOPS complex subunit GON7", "gene_name": "GON7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UET6-1", "protein_name": "tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase", "gene_name": "FTSJ1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UJA5-1", "protein_name": "tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6", "gene_name": "TRMT6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96S44-1", "protein_name": "EKC/KEOPS complex subunit TP53RK", "gene_name": "TP53RK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H3H1-1", "protein_name": "tRNA dimethylallyltransferase", "gene_name": "TRIT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPF4-1", "protein_name": "tRNA N6-adenosine threonylcarbamoyltransferase", "gene_name": "OSGEP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07814-1", "protein_name": "Bifunctional glutamate/proline--tRNA ligase", "gene_name": "EPRS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3C4-1", "protein_name": "EKC/KEOPS complex subunit TPRKB", "gene_name": "TPRKB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5T6V5-1", "protein_name": "Queuosine 5'-phosphate N-glycosylase/hydrolase", "gene_name": "QNG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXR0-1", "protein_name": "Queuine tRNA-ribosyltransferase catalytic subunit 1", "gene_name": "QTRT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96FX7-1", "protein_name": "tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A", "gene_name": "TRMT61A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TBZ6-1", "protein_name": "tRNA methyltransferase 10 homolog A", "gene_name": "TRMT10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYL2-1", "protein_name": "Probable tRNA (uracil-O(2)-)-methyltransferase", "gene_name": "TRMT44", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBP6-1", "protein_name": "tRNA (guanine-N(7)-)-methyltransferase", "gene_name": "METTL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TEA1-1", "protein_name": "tRNA (cytosine(72)-C(5))-methyltransferase NSUN6", "gene_name": "NSUN6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NX74-1", "protein_name": "tRNA-dihydrouridine(20) synthase [NAD(P)+]-like", "gene_name": "DUS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57081-1", "protein_name": "tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit WDR4", "gene_name": "WDR4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6YHU6-1", "protein_name": "tRNA (32-2'-O)-methyltransferase regulator THADA", "gene_name": "THADA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NUP7-1", "protein_name": "tRNA:m(4)X modification enzyme TRM13 homolog", "gene_name": "TRMT13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUB4-1", "protein_name": "tRNA-specific adenosine deaminase 1", "gene_name": "ADAT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z6V5-1", "protein_name": "tRNA-specific adenosine-34 deaminase catalytic subunit ADAT2", "gene_name": "ADAT2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "O14717", "url": "https://www.uniprot.org/uniprotkb/O14717" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.10982862", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 38 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Pseudouridine synthase 3 from mouse modifies the anticodon loop of tRNA.", "journal": "Biochemistry", "date": "2000", "authors": "Chen J, Patton JR", "reference": { "type": "PubMed", "id": "11027153", "url": "https://pubmed.ncbi.nlm.nih.gov/11027153" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O14717-1", "protein_name": "tRNA (cytosine(38)-C(5))-methyltransferase", "gene_name": "TRDMT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BT7-1", "protein_name": "tRNA (carboxymethyluridine(34)-5-O)-methyltransferase ALKBH8", "gene_name": "ALKBH8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UI30-1", "protein_name": "Multifunctional methyltransferase subunit TRM112-like protein", "gene_name": "TRMT112", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08J23-1", "protein_name": "RNA cytosine C(5)-methyltransferase NSUN2", "gene_name": "NSUN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZE2-1", "protein_name": "tRNA pseudouridine(38/39) synthase", "gene_name": "PUS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96PZ0-1", "protein_name": "Pseudouridylate synthase 7 homolog", "gene_name": "PUS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H974-1", "protein_name": "Queuine tRNA-ribosyltransferase accessory subunit 2", "gene_name": "QTRT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NWX6-1", "protein_name": "Probable tRNA(His) guanylyltransferase", "gene_name": "THG1L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5VV42-1", "protein_name": "Threonylcarbamoyladenosine tRNA methylthiotransferase", "gene_name": "CDKAL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14657-1", "protein_name": "EKC/KEOPS complex subunit LAGE3", "gene_name": "LAGE3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P272-1", "protein_name": "Probable tRNA methyltransferase 9B", "gene_name": "TRMT9B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2VPK5-1", "protein_name": "Cytoplasmic tRNA 2-thiolation protein 2", "gene_name": "CTU2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z7A3-1", "protein_name": "Cytoplasmic tRNA 2-thiolation protein 1", "gene_name": "CTU1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTM9-1", "protein_name": "Ubiquitin-related modifier 1", "gene_name": "URM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NXH9-1", "protein_name": "tRNA (guanine(26)-N(2))-dimethyltransferase", "gene_name": "TRMT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z4G4-1", "protein_name": "tRNA (guanine(10)-N(2))-methyltransferase TRMT11", "gene_name": "TRMT11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EY9-1", "protein_name": "tRNA-specific adenosine-34 deaminase regulatory subunit ADAT3", "gene_name": "ADAT3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXV9-1", "protein_name": "EKC/KEOPS complex subunit GON7", "gene_name": "GON7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UET6-1", "protein_name": "tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase", "gene_name": "FTSJ1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UJA5-1", "protein_name": "tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6", "gene_name": "TRMT6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96S44-1", "protein_name": "EKC/KEOPS complex subunit TP53RK", "gene_name": "TP53RK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H3H1-1", "protein_name": "tRNA dimethylallyltransferase", "gene_name": "TRIT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9JI38-1", "protein_name": "tRNA pseudouridine(38/39) synthase", "gene_name": "Pus3", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9NPF4-1", "protein_name": "tRNA N6-adenosine threonylcarbamoyltransferase", "gene_name": "OSGEP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07814-1", "protein_name": "Bifunctional glutamate/proline--tRNA ligase", "gene_name": "EPRS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3C4-1", "protein_name": "EKC/KEOPS complex subunit TPRKB", "gene_name": "TPRKB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5T6V5-1", "protein_name": "Queuosine 5'-phosphate N-glycosylase/hydrolase", "gene_name": "QNG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXR0-1", "protein_name": "Queuine tRNA-ribosyltransferase catalytic subunit 1", "gene_name": "QTRT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96FX7-1", "protein_name": "tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A", "gene_name": "TRMT61A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TBZ6-1", "protein_name": "tRNA methyltransferase 10 homolog A", "gene_name": "TRMT10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYL2-1", "protein_name": "Probable tRNA (uracil-O(2)-)-methyltransferase", "gene_name": "TRMT44", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBP6-1", "protein_name": "tRNA (guanine-N(7)-)-methyltransferase", "gene_name": "METTL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TEA1-1", "protein_name": "tRNA (cytosine(72)-C(5))-methyltransferase NSUN6", "gene_name": "NSUN6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NX74-1", "protein_name": "tRNA-dihydrouridine(20) synthase [NAD(P)+]-like", "gene_name": "DUS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57081-1", "protein_name": "tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit WDR4", "gene_name": "WDR4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6YHU6-1", "protein_name": "tRNA (32-2'-O)-methyltransferase regulator THADA", "gene_name": "THADA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NUP7-1", "protein_name": "tRNA:m(4)X modification enzyme TRM13 homolog", "gene_name": "TRMT13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUB4-1", "protein_name": "tRNA-specific adenosine deaminase 1", "gene_name": "ADAT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z6V5-1", "protein_name": "tRNA-specific adenosine-34 deaminase catalytic subunit ADAT2", "gene_name": "ADAT2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "O14717", "url": "https://www.uniprot.org/uniprotkb/O14717" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.11027153", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 39 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Cloning of a human tRNA isopentenyl transferase.", "journal": "Gene", "date": "2000", "authors": "Golovko A, Hjalm G, Sitbon F, Nicander B", "reference": { "type": "PubMed", "id": "11111046", "url": "https://pubmed.ncbi.nlm.nih.gov/11111046" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O14717-1", "protein_name": "tRNA (cytosine(38)-C(5))-methyltransferase", "gene_name": "TRDMT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BT7-1", "protein_name": "tRNA (carboxymethyluridine(34)-5-O)-methyltransferase ALKBH8", "gene_name": "ALKBH8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UI30-1", "protein_name": "Multifunctional methyltransferase subunit TRM112-like protein", "gene_name": "TRMT112", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08J23-1", "protein_name": "RNA cytosine C(5)-methyltransferase NSUN2", "gene_name": "NSUN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZE2-1", "protein_name": "tRNA pseudouridine(38/39) synthase", "gene_name": "PUS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96PZ0-1", "protein_name": "Pseudouridylate synthase 7 homolog", "gene_name": "PUS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H974-1", "protein_name": "Queuine tRNA-ribosyltransferase accessory subunit 2", "gene_name": "QTRT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NWX6-1", "protein_name": "Probable tRNA(His) guanylyltransferase", "gene_name": "THG1L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5VV42-1", "protein_name": "Threonylcarbamoyladenosine tRNA methylthiotransferase", "gene_name": "CDKAL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14657-1", "protein_name": "EKC/KEOPS complex subunit LAGE3", "gene_name": "LAGE3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P272-1", "protein_name": "Probable tRNA methyltransferase 9B", "gene_name": "TRMT9B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2VPK5-1", "protein_name": "Cytoplasmic tRNA 2-thiolation protein 2", "gene_name": "CTU2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z7A3-1", "protein_name": "Cytoplasmic tRNA 2-thiolation protein 1", "gene_name": "CTU1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTM9-1", "protein_name": "Ubiquitin-related modifier 1", "gene_name": "URM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NXH9-1", "protein_name": "tRNA (guanine(26)-N(2))-dimethyltransferase", "gene_name": "TRMT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z4G4-1", "protein_name": "tRNA (guanine(10)-N(2))-methyltransferase TRMT11", "gene_name": "TRMT11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EY9-1", "protein_name": "tRNA-specific adenosine-34 deaminase regulatory subunit ADAT3", "gene_name": "ADAT3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXV9-1", "protein_name": "EKC/KEOPS complex subunit GON7", "gene_name": "GON7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UET6-1", "protein_name": "tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase", "gene_name": "FTSJ1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UJA5-1", "protein_name": "tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6", "gene_name": "TRMT6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96S44-1", "protein_name": "EKC/KEOPS complex subunit TP53RK", "gene_name": "TP53RK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H3H1-1", "protein_name": "tRNA dimethylallyltransferase", "gene_name": "TRIT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPF4-1", "protein_name": "tRNA N6-adenosine threonylcarbamoyltransferase", "gene_name": "OSGEP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07814-1", "protein_name": "Bifunctional glutamate/proline--tRNA ligase", "gene_name": "EPRS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3C4-1", "protein_name": "EKC/KEOPS complex subunit TPRKB", "gene_name": "TPRKB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5T6V5-1", "protein_name": "Queuosine 5'-phosphate N-glycosylase/hydrolase", "gene_name": "QNG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXR0-1", "protein_name": "Queuine tRNA-ribosyltransferase catalytic subunit 1", "gene_name": "QTRT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96FX7-1", "protein_name": "tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A", "gene_name": "TRMT61A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TBZ6-1", "protein_name": "tRNA methyltransferase 10 homolog A", "gene_name": "TRMT10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYL2-1", "protein_name": "Probable tRNA (uracil-O(2)-)-methyltransferase", "gene_name": "TRMT44", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBP6-1", "protein_name": "tRNA (guanine-N(7)-)-methyltransferase", "gene_name": "METTL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TEA1-1", "protein_name": "tRNA (cytosine(72)-C(5))-methyltransferase NSUN6", "gene_name": "NSUN6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NX74-1", "protein_name": "tRNA-dihydrouridine(20) synthase [NAD(P)+]-like", "gene_name": "DUS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57081-1", "protein_name": "tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit WDR4", "gene_name": "WDR4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6YHU6-1", "protein_name": "tRNA (32-2'-O)-methyltransferase regulator THADA", "gene_name": "THADA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NUP7-1", "protein_name": "tRNA:m(4)X modification enzyme TRM13 homolog", "gene_name": "TRMT13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUB4-1", "protein_name": "tRNA-specific adenosine deaminase 1", "gene_name": "ADAT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z6V5-1", "protein_name": "tRNA-specific adenosine-34 deaminase catalytic subunit ADAT2", "gene_name": "ADAT2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "O14717", "url": "https://www.uniprot.org/uniprotkb/O14717" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.11111046", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 38 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { 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J. Biochem. Cell Biol.", "date": "2001", "authors": "Franchina M, Hooper J, Kay P H", "reference": { "type": "PubMed", "id": "11551826", "url": "https://pubmed.ncbi.nlm.nih.gov/11551826" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O14717-1", "protein_name": "tRNA (cytosine(38)-C(5))-methyltransferase", "gene_name": "TRDMT1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "O14717", "url": "https://www.uniprot.org/uniprotkb/O14717" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.11551826", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": 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"gene_name": "PUS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H974-1", "protein_name": "Queuine tRNA-ribosyltransferase accessory subunit 2", "gene_name": "QTRT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NWX6-1", "protein_name": "Probable tRNA(His) guanylyltransferase", "gene_name": "THG1L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5VV42-1", "protein_name": "Threonylcarbamoyladenosine tRNA methylthiotransferase", "gene_name": "CDKAL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14657-1", "protein_name": "EKC/KEOPS complex subunit LAGE3", "gene_name": "LAGE3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P272-1", "protein_name": "Probable tRNA methyltransferase 9B", "gene_name": "TRMT9B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2VPK5-1", "protein_name": "Cytoplasmic tRNA 2-thiolation protein 2", "gene_name": "CTU2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z7A3-1", "protein_name": "Cytoplasmic tRNA 2-thiolation protein 1", "gene_name": "CTU1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTM9-1", "protein_name": "Ubiquitin-related modifier 1", "gene_name": "URM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NXH9-1", "protein_name": "tRNA (guanine(26)-N(2))-dimethyltransferase", "gene_name": "TRMT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z4G4-1", "protein_name": "tRNA (guanine(10)-N(2))-methyltransferase TRMT11", "gene_name": "TRMT11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EY9-1", "protein_name": "tRNA-specific adenosine-34 deaminase regulatory subunit ADAT3", "gene_name": "ADAT3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXV9-1", "protein_name": "EKC/KEOPS complex subunit GON7", "gene_name": "GON7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UET6-1", "protein_name": "tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase", "gene_name": "FTSJ1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UJA5-1", "protein_name": "tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6", "gene_name": "TRMT6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96S44-1", "protein_name": "EKC/KEOPS complex subunit TP53RK", "gene_name": "TP53RK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H3H1-1", "protein_name": "tRNA dimethylallyltransferase", "gene_name": "TRIT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPF4-1", "protein_name": "tRNA N6-adenosine threonylcarbamoyltransferase", "gene_name": "OSGEP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07814-1", "protein_name": "Bifunctional glutamate/proline--tRNA ligase", "gene_name": "EPRS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3C4-1", "protein_name": "EKC/KEOPS complex subunit TPRKB", "gene_name": "TPRKB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5T6V5-1", "protein_name": "Queuosine 5'-phosphate N-glycosylase/hydrolase", "gene_name": "QNG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXR0-1", "protein_name": "Queuine tRNA-ribosyltransferase catalytic subunit 1", "gene_name": "QTRT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96FX7-1", "protein_name": "tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A", "gene_name": "TRMT61A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TBZ6-1", "protein_name": "tRNA methyltransferase 10 homolog A", "gene_name": "TRMT10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYL2-1", "protein_name": "Probable tRNA (uracil-O(2)-)-methyltransferase", "gene_name": "TRMT44", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBP6-1", "protein_name": "tRNA (guanine-N(7)-)-methyltransferase", "gene_name": "METTL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TEA1-1", "protein_name": "tRNA (cytosine(72)-C(5))-methyltransferase NSUN6", "gene_name": "NSUN6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NX74-1", "protein_name": "tRNA-dihydrouridine(20) synthase [NAD(P)+]-like", "gene_name": "DUS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57081-1", "protein_name": "tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit WDR4", "gene_name": "WDR4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6YHU6-1", "protein_name": "tRNA (32-2'-O)-methyltransferase regulator THADA", "gene_name": "THADA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NUP7-1", "protein_name": "tRNA:m(4)X modification enzyme TRM13 homolog", "gene_name": "TRMT13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUB4-1", "protein_name": "tRNA-specific adenosine deaminase 1", "gene_name": "ADAT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z6V5-1", "protein_name": "tRNA-specific adenosine-34 deaminase catalytic subunit ADAT2", "gene_name": "ADAT2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "O14717", "url": "https://www.uniprot.org/uniprotkb/O14717" } ], "common_name": "Human", "glygen_name": 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The tRNA methylase METTL1 is phosphorylated and inactivated by PKB and RSK in vitro and in cells.", "journal": "The EMBO journal", "date": 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"gene_name": "TRIT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPF4-1", "protein_name": "tRNA N6-adenosine threonylcarbamoyltransferase", "gene_name": "OSGEP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07814-1", "protein_name": "Bifunctional glutamate/proline--tRNA ligase", "gene_name": "EPRS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3C4-1", "protein_name": "EKC/KEOPS complex subunit TPRKB", "gene_name": "TPRKB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5T6V5-1", "protein_name": "Queuosine 5'-phosphate N-glycosylase/hydrolase", "gene_name": "QNG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXR0-1", "protein_name": "Queuine tRNA-ribosyltransferase catalytic subunit 1", "gene_name": "QTRT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96FX7-1", "protein_name": "tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A", "gene_name": "TRMT61A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TBZ6-1", 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"Human" }, { "uniprot_canonical_ac": "Q9NUP7-1", "protein_name": "tRNA:m(4)X modification enzyme TRM13 homolog", "gene_name": "TRMT13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUB4-1", "protein_name": "tRNA-specific adenosine deaminase 1", "gene_name": "ADAT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z6V5-1", "protein_name": "tRNA-specific adenosine-34 deaminase catalytic subunit ADAT2", "gene_name": "ADAT2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "O14717", "url": "https://www.uniprot.org/uniprotkb/O14717" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.15870694", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 38 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", 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"o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A novel human tRNA-dihydrouridine synthase involved in pulmonary carcinogenesis.", "journal": "Cancer research", "date": "2005", "authors": "Kato T, Daigo Y, Hayama S, Ishikawa N, Yamabuki T, Ito T, Miyamoto M, Kondo S, Nakamura Y", "reference": { "type": "PubMed", "id": "15994936", "url": "https://pubmed.ncbi.nlm.nih.gov/15994936" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O14717-1", "protein_name": "tRNA (cytosine(38)-C(5))-methyltransferase", "gene_name": "TRDMT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BT7-1", "protein_name": "tRNA (carboxymethyluridine(34)-5-O)-methyltransferase ALKBH8", "gene_name": "ALKBH8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UI30-1", "protein_name": "Multifunctional methyltransferase subunit TRM112-like protein", "gene_name": "TRMT112", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08J23-1", "protein_name": "RNA cytosine C(5)-methyltransferase NSUN2", "gene_name": "NSUN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZE2-1", "protein_name": "tRNA pseudouridine(38/39) synthase", "gene_name": "PUS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96PZ0-1", "protein_name": "Pseudouridylate synthase 7 homolog", "gene_name": "PUS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H974-1", "protein_name": "Queuine tRNA-ribosyltransferase accessory subunit 2", "gene_name": "QTRT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NWX6-1", "protein_name": "Probable tRNA(His) guanylyltransferase", "gene_name": "THG1L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5VV42-1", "protein_name": "Threonylcarbamoyladenosine tRNA methylthiotransferase", "gene_name": "CDKAL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14657-1", "protein_name": "EKC/KEOPS complex subunit LAGE3", "gene_name": "LAGE3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P272-1", "protein_name": "Probable tRNA methyltransferase 9B", "gene_name": "TRMT9B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2VPK5-1", "protein_name": "Cytoplasmic tRNA 2-thiolation protein 2", "gene_name": "CTU2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z7A3-1", "protein_name": "Cytoplasmic tRNA 2-thiolation protein 1", "gene_name": "CTU1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTM9-1", "protein_name": "Ubiquitin-related modifier 1", "gene_name": "URM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NXH9-1", "protein_name": "tRNA (guanine(26)-N(2))-dimethyltransferase", "gene_name": "TRMT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z4G4-1", "protein_name": "tRNA (guanine(10)-N(2))-methyltransferase TRMT11", "gene_name": "TRMT11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EY9-1", "protein_name": "tRNA-specific adenosine-34 deaminase regulatory subunit ADAT3", "gene_name": "ADAT3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXV9-1", "protein_name": "EKC/KEOPS complex subunit GON7", "gene_name": "GON7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UET6-1", "protein_name": "tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase", "gene_name": "FTSJ1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UJA5-1", "protein_name": "tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6", "gene_name": "TRMT6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96S44-1", "protein_name": "EKC/KEOPS complex subunit TP53RK", "gene_name": "TP53RK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H3H1-1", "protein_name": "tRNA dimethylallyltransferase", "gene_name": "TRIT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPF4-1", "protein_name": "tRNA N6-adenosine threonylcarbamoyltransferase", "gene_name": "OSGEP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07814-1", "protein_name": "Bifunctional glutamate/proline--tRNA ligase", "gene_name": "EPRS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3C4-1", "protein_name": "EKC/KEOPS complex subunit TPRKB", "gene_name": "TPRKB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5T6V5-1", "protein_name": "Queuosine 5'-phosphate N-glycosylase/hydrolase", "gene_name": "QNG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXR0-1", "protein_name": "Queuine tRNA-ribosyltransferase catalytic subunit 1", "gene_name": "QTRT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96FX7-1", "protein_name": "tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A", "gene_name": "TRMT61A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TBZ6-1", "protein_name": "tRNA methyltransferase 10 homolog A", "gene_name": "TRMT10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYL2-1", "protein_name": "Probable tRNA (uracil-O(2)-)-methyltransferase", "gene_name": "TRMT44", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBP6-1", "protein_name": "tRNA (guanine-N(7)-)-methyltransferase", "gene_name": "METTL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TEA1-1", "protein_name": "tRNA (cytosine(72)-C(5))-methyltransferase NSUN6", "gene_name": "NSUN6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NX74-1", "protein_name": "tRNA-dihydrouridine(20) synthase [NAD(P)+]-like", "gene_name": "DUS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57081-1", "protein_name": "tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit WDR4", "gene_name": "WDR4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6YHU6-1", "protein_name": "tRNA (32-2'-O)-methyltransferase regulator THADA", "gene_name": "THADA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NUP7-1", "protein_name": "tRNA:m(4)X modification enzyme TRM13 homolog", "gene_name": "TRMT13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUB4-1", "protein_name": "tRNA-specific adenosine deaminase 1", "gene_name": "ADAT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z6V5-1", "protein_name": "tRNA-specific adenosine-34 deaminase catalytic subunit ADAT2", "gene_name": "ADAT2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "O14717", "url": "https://www.uniprot.org/uniprotkb/O14717" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.15994936", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], 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"n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The bipartite structure of the tRNA m1A58 methyltransferase from S. cerevisiae is conserved in humans.", "journal": "RNA (New York, N.Y.)", "date": "2005", "authors": "Ozanick S, Krecic A, Andersland J, Anderson JT", "reference": { "type": "PubMed", "id": "16043508", "url": "https://pubmed.ncbi.nlm.nih.gov/16043508" }, 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"uniprot_canonical_ac": "Q96PZ0-1", "protein_name": "Pseudouridylate synthase 7 homolog", "gene_name": "PUS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H974-1", "protein_name": "Queuine tRNA-ribosyltransferase accessory subunit 2", "gene_name": "QTRT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NWX6-1", "protein_name": "Probable tRNA(His) guanylyltransferase", "gene_name": "THG1L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5VV42-1", "protein_name": "Threonylcarbamoyladenosine tRNA methylthiotransferase", "gene_name": "CDKAL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14657-1", "protein_name": "EKC/KEOPS complex subunit LAGE3", "gene_name": "LAGE3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P272-1", "protein_name": "Probable tRNA methyltransferase 9B", "gene_name": "TRMT9B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2VPK5-1", "protein_name": "Cytoplasmic tRNA 2-thiolation protein 2", "gene_name": "CTU2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z7A3-1", "protein_name": "Cytoplasmic tRNA 2-thiolation protein 1", "gene_name": "CTU1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTM9-1", "protein_name": "Ubiquitin-related modifier 1", "gene_name": "URM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NXH9-1", "protein_name": "tRNA (guanine(26)-N(2))-dimethyltransferase", "gene_name": "TRMT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z4G4-1", "protein_name": "tRNA (guanine(10)-N(2))-methyltransferase TRMT11", "gene_name": "TRMT11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EY9-1", "protein_name": "tRNA-specific adenosine-34 deaminase regulatory subunit ADAT3", "gene_name": "ADAT3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXV9-1", "protein_name": "EKC/KEOPS complex subunit GON7", "gene_name": "GON7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UET6-1", "protein_name": "tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase", "gene_name": "FTSJ1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UJA5-1", "protein_name": "tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6", "gene_name": "TRMT6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96S44-1", "protein_name": "EKC/KEOPS complex subunit TP53RK", "gene_name": "TP53RK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H3H1-1", "protein_name": "tRNA dimethylallyltransferase", "gene_name": "TRIT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPF4-1", "protein_name": "tRNA N6-adenosine threonylcarbamoyltransferase", "gene_name": "OSGEP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07814-1", "protein_name": "Bifunctional glutamate/proline--tRNA ligase", "gene_name": "EPRS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3C4-1", "protein_name": "EKC/KEOPS complex subunit TPRKB", "gene_name": "TPRKB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5T6V5-1", "protein_name": "Queuosine 5'-phosphate N-glycosylase/hydrolase", "gene_name": "QNG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXR0-1", "protein_name": "Queuine tRNA-ribosyltransferase catalytic subunit 1", "gene_name": "QTRT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96FX7-1", "protein_name": "tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A", "gene_name": "TRMT61A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TBZ6-1", "protein_name": "tRNA methyltransferase 10 homolog A", "gene_name": "TRMT10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYL2-1", "protein_name": "Probable tRNA (uracil-O(2)-)-methyltransferase", "gene_name": "TRMT44", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBP6-1", "protein_name": "tRNA (guanine-N(7)-)-methyltransferase", "gene_name": "METTL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q80XC2-1", "protein_name": "tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A", "gene_name": "Trmt61a", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8TEA1-1", "protein_name": "tRNA (cytosine(72)-C(5))-methyltransferase NSUN6", "gene_name": "NSUN6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NX74-1", "protein_name": "tRNA-dihydrouridine(20) synthase [NAD(P)+]-like", "gene_name": "DUS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57081-1", "protein_name": "tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit WDR4", "gene_name": "WDR4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6YHU6-1", "protein_name": "tRNA (32-2'-O)-methyltransferase regulator THADA", "gene_name": "THADA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NUP7-1", "protein_name": "tRNA:m(4)X modification enzyme TRM13 homolog", "gene_name": "TRMT13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUB4-1", "protein_name": "tRNA-specific adenosine deaminase 1", "gene_name": "ADAT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z6V5-1", "protein_name": "tRNA-specific adenosine-34 deaminase catalytic subunit ADAT2", "gene_name": "ADAT2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "O14717", "url": "https://www.uniprot.org/uniprotkb/O14717" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.16043508", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 40 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Methylation of tRNAAsp by the DNA methyltransferase homolog Dnmt2.", "journal": "Science (New York, N.Y.)", "date": "2006", "authors": "Goll MG, Kirpekar F, Maggert KA, Yoder JA, Hsieh CL, Zhang X, Golic KG, Jacobsen SE, Bestor TH", "reference": { "type": "PubMed", "id": "16424344", "url": "https://pubmed.ncbi.nlm.nih.gov/16424344" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O14717-1", "protein_name": "tRNA (cytosine(38)-C(5))-methyltransferase", "gene_name": "TRDMT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BT7-1", "protein_name": "tRNA (carboxymethyluridine(34)-5-O)-methyltransferase ALKBH8", "gene_name": "ALKBH8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UI30-1", "protein_name": "Multifunctional methyltransferase subunit TRM112-like protein", "gene_name": "TRMT112", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08J23-1", "protein_name": "RNA cytosine C(5)-methyltransferase NSUN2", "gene_name": "NSUN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZE2-1", "protein_name": "tRNA pseudouridine(38/39) synthase", "gene_name": "PUS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96PZ0-1", "protein_name": "Pseudouridylate synthase 7 homolog", "gene_name": "PUS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "F4JWT7-1", "protein_name": "tRNA (cytosine(38)-C(5))-methyltransferase 2", "gene_name": "DNMT2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9H974-1", "protein_name": "Queuine tRNA-ribosyltransferase accessory subunit 2", "gene_name": "QTRT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NWX6-1", "protein_name": "Probable tRNA(His) guanylyltransferase", "gene_name": "THG1L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5VV42-1", "protein_name": "Threonylcarbamoyladenosine tRNA methylthiotransferase", "gene_name": "CDKAL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14657-1", "protein_name": "EKC/KEOPS complex subunit LAGE3", "gene_name": "LAGE3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P272-1", "protein_name": "Probable tRNA methyltransferase 9B", "gene_name": "TRMT9B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2VPK5-1", "protein_name": "Cytoplasmic tRNA 2-thiolation protein 2", "gene_name": "CTU2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z7A3-1", "protein_name": "Cytoplasmic tRNA 2-thiolation protein 1", "gene_name": "CTU1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTM9-1", "protein_name": "Ubiquitin-related modifier 1", "gene_name": "URM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NXH9-1", "protein_name": "tRNA (guanine(26)-N(2))-dimethyltransferase", "gene_name": "TRMT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z4G4-1", "protein_name": "tRNA (guanine(10)-N(2))-methyltransferase TRMT11", "gene_name": "TRMT11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EY9-1", "protein_name": "tRNA-specific adenosine-34 deaminase regulatory subunit ADAT3", "gene_name": "ADAT3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXV9-1", "protein_name": "EKC/KEOPS complex subunit GON7", "gene_name": "GON7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UET6-1", "protein_name": "tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase", "gene_name": "FTSJ1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UJA5-1", "protein_name": "tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6", "gene_name": "TRMT6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96S44-1", "protein_name": "EKC/KEOPS complex subunit TP53RK", "gene_name": "TP53RK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H3H1-1", "protein_name": "tRNA dimethylallyltransferase", "gene_name": "TRIT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPF4-1", "protein_name": "tRNA N6-adenosine threonylcarbamoyltransferase", "gene_name": "OSGEP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07814-1", "protein_name": "Bifunctional glutamate/proline--tRNA ligase", "gene_name": "EPRS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3C4-1", "protein_name": "EKC/KEOPS complex subunit TPRKB", "gene_name": "TPRKB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5T6V5-1", "protein_name": "Queuosine 5'-phosphate N-glycosylase/hydrolase", "gene_name": "QNG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXR0-1", "protein_name": "Queuine tRNA-ribosyltransferase catalytic subunit 1", "gene_name": "QTRT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96FX7-1", "protein_name": "tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A", "gene_name": "TRMT61A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TBZ6-1", "protein_name": "tRNA methyltransferase 10 homolog A", "gene_name": "TRMT10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYL2-1", "protein_name": "Probable tRNA (uracil-O(2)-)-methyltransferase", "gene_name": "TRMT44", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBP6-1", "protein_name": "tRNA (guanine-N(7)-)-methyltransferase", "gene_name": "METTL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O55055-1", "protein_name": "tRNA (cytosine(38)-C(5))-methyltransferase", "gene_name": "Trdmt1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8TEA1-1", "protein_name": "tRNA (cytosine(72)-C(5))-methyltransferase NSUN6", "gene_name": "NSUN6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NX74-1", "protein_name": "tRNA-dihydrouridine(20) synthase [NAD(P)+]-like", "gene_name": "DUS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57081-1", "protein_name": "tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit WDR4", "gene_name": "WDR4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6YHU6-1", "protein_name": "tRNA (32-2'-O)-methyltransferase regulator THADA", "gene_name": "THADA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NUP7-1", "protein_name": "tRNA:m(4)X modification enzyme TRM13 homolog", "gene_name": "TRMT13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUB4-1", "protein_name": "tRNA-specific adenosine deaminase 1", "gene_name": "ADAT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z6V5-1", "protein_name": "tRNA-specific adenosine-34 deaminase catalytic subunit ADAT2", "gene_name": "ADAT2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "O14717", "url": "https://www.uniprot.org/uniprotkb/O14717" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.16424344", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 40 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Identification of human tRNA:m5C methyltransferase catalysing intron-dependent m5C formation in the first position of the anticodon of the pre-tRNA Leu (CAA).", "journal": "Nucleic acids research", "date": "2006", "authors": "Brzezicha B, Schmidt M, Makalowska I, Jarmolowski A, Pienkowska J, Szweykowska-Kulinska Z", "reference": { "type": "PubMed", "id": "17071714", "url": "https://pubmed.ncbi.nlm.nih.gov/17071714" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O14717-1", "protein_name": "tRNA (cytosine(38)-C(5))-methyltransferase", "gene_name": "TRDMT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BT7-1", "protein_name": "tRNA (carboxymethyluridine(34)-5-O)-methyltransferase ALKBH8", "gene_name": "ALKBH8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UI30-1", "protein_name": "Multifunctional methyltransferase subunit TRM112-like protein", "gene_name": "TRMT112", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08J23-1", "protein_name": "RNA cytosine C(5)-methyltransferase NSUN2", "gene_name": "NSUN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZE2-1", "protein_name": "tRNA pseudouridine(38/39) synthase", "gene_name": "PUS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96PZ0-1", "protein_name": "Pseudouridylate synthase 7 homolog", "gene_name": "PUS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H974-1", "protein_name": "Queuine tRNA-ribosyltransferase accessory subunit 2", "gene_name": "QTRT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NWX6-1", "protein_name": "Probable tRNA(His) guanylyltransferase", "gene_name": "THG1L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5VV42-1", "protein_name": "Threonylcarbamoyladenosine tRNA methylthiotransferase", "gene_name": "CDKAL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14657-1", "protein_name": "EKC/KEOPS complex subunit LAGE3", "gene_name": "LAGE3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P272-1", "protein_name": "Probable tRNA methyltransferase 9B", "gene_name": "TRMT9B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2VPK5-1", "protein_name": "Cytoplasmic tRNA 2-thiolation protein 2", "gene_name": "CTU2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z7A3-1", "protein_name": "Cytoplasmic tRNA 2-thiolation protein 1", "gene_name": "CTU1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTM9-1", "protein_name": "Ubiquitin-related modifier 1", "gene_name": "URM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NXH9-1", "protein_name": "tRNA (guanine(26)-N(2))-dimethyltransferase", "gene_name": "TRMT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z4G4-1", "protein_name": "tRNA (guanine(10)-N(2))-methyltransferase TRMT11", "gene_name": "TRMT11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EY9-1", "protein_name": "tRNA-specific adenosine-34 deaminase regulatory subunit ADAT3", "gene_name": "ADAT3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXV9-1", "protein_name": "EKC/KEOPS complex subunit GON7", "gene_name": "GON7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UET6-1", "protein_name": "tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase", "gene_name": "FTSJ1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UJA5-1", "protein_name": "tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6", "gene_name": "TRMT6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96S44-1", "protein_name": "EKC/KEOPS complex subunit TP53RK", "gene_name": "TP53RK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H3H1-1", "protein_name": "tRNA dimethylallyltransferase", "gene_name": "TRIT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPF4-1", "protein_name": "tRNA N6-adenosine threonylcarbamoyltransferase", "gene_name": "OSGEP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07814-1", "protein_name": "Bifunctional glutamate/proline--tRNA ligase", "gene_name": "EPRS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3C4-1", "protein_name": "EKC/KEOPS complex subunit TPRKB", "gene_name": "TPRKB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5T6V5-1", "protein_name": "Queuosine 5'-phosphate N-glycosylase/hydrolase", "gene_name": "QNG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXR0-1", "protein_name": "Queuine tRNA-ribosyltransferase catalytic subunit 1", "gene_name": "QTRT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96FX7-1", "protein_name": "tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A", "gene_name": "TRMT61A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TBZ6-1", "protein_name": "tRNA methyltransferase 10 homolog A", "gene_name": "TRMT10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYL2-1", "protein_name": "Probable tRNA (uracil-O(2)-)-methyltransferase", "gene_name": "TRMT44", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBP6-1", "protein_name": "tRNA (guanine-N(7)-)-methyltransferase", "gene_name": "METTL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TEA1-1", "protein_name": "tRNA (cytosine(72)-C(5))-methyltransferase NSUN6", "gene_name": "NSUN6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NX74-1", "protein_name": "tRNA-dihydrouridine(20) synthase [NAD(P)+]-like", "gene_name": "DUS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57081-1", "protein_name": "tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit WDR4", "gene_name": "WDR4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6YHU6-1", "protein_name": "tRNA (32-2'-O)-methyltransferase regulator THADA", "gene_name": "THADA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NUP7-1", "protein_name": "tRNA:m(4)X modification enzyme TRM13 homolog", "gene_name": "TRMT13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUB4-1", "protein_name": "tRNA-specific adenosine deaminase 1", "gene_name": "ADAT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z6V5-1", "protein_name": "tRNA-specific adenosine-34 deaminase catalytic subunit ADAT2", "gene_name": "ADAT2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "O14717", "url": "https://www.uniprot.org/uniprotkb/O14717" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.17071714", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 38 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Human DNMT2 methylates tRNA(Asp) molecules using a DNA methyltransferase-like catalytic mechanism.", "journal": "RNA (New York, N.Y.)", "date": "2008", "authors": "Jurkowski TP, Meusburger M, Phalke S, Helm M, Nellen W, Reuter G, Jeltsch A", "reference": { "type": "PubMed", "id": "18567810", "url": "https://pubmed.ncbi.nlm.nih.gov/18567810" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O14717-1", "protein_name": "tRNA (cytosine(38)-C(5))-methyltransferase", "gene_name": "TRDMT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BT7-1", "protein_name": "tRNA (carboxymethyluridine(34)-5-O)-methyltransferase ALKBH8", "gene_name": "ALKBH8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UI30-1", "protein_name": "Multifunctional methyltransferase subunit TRM112-like protein", "gene_name": "TRMT112", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08J23-1", "protein_name": "RNA cytosine C(5)-methyltransferase NSUN2", "gene_name": "NSUN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZE2-1", "protein_name": "tRNA pseudouridine(38/39) synthase", "gene_name": "PUS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96PZ0-1", "protein_name": "Pseudouridylate synthase 7 homolog", "gene_name": "PUS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H974-1", "protein_name": "Queuine tRNA-ribosyltransferase accessory subunit 2", "gene_name": "QTRT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NWX6-1", "protein_name": "Probable tRNA(His) guanylyltransferase", "gene_name": "THG1L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5VV42-1", "protein_name": "Threonylcarbamoyladenosine tRNA methylthiotransferase", "gene_name": "CDKAL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14657-1", "protein_name": "EKC/KEOPS complex subunit LAGE3", "gene_name": "LAGE3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P272-1", "protein_name": "Probable tRNA methyltransferase 9B", "gene_name": "TRMT9B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2VPK5-1", "protein_name": "Cytoplasmic tRNA 2-thiolation protein 2", "gene_name": "CTU2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z7A3-1", "protein_name": "Cytoplasmic tRNA 2-thiolation protein 1", "gene_name": "CTU1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTM9-1", "protein_name": "Ubiquitin-related modifier 1", "gene_name": "URM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NXH9-1", "protein_name": "tRNA (guanine(26)-N(2))-dimethyltransferase", "gene_name": "TRMT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z4G4-1", "protein_name": "tRNA (guanine(10)-N(2))-methyltransferase TRMT11", "gene_name": "TRMT11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EY9-1", "protein_name": "tRNA-specific adenosine-34 deaminase regulatory subunit ADAT3", "gene_name": "ADAT3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXV9-1", "protein_name": "EKC/KEOPS complex subunit GON7", "gene_name": "GON7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UET6-1", "protein_name": "tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase", "gene_name": "FTSJ1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UJA5-1", "protein_name": "tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6", "gene_name": "TRMT6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96S44-1", "protein_name": "EKC/KEOPS complex subunit TP53RK", "gene_name": "TP53RK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H3H1-1", "protein_name": "tRNA dimethylallyltransferase", "gene_name": "TRIT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPF4-1", "protein_name": "tRNA N6-adenosine threonylcarbamoyltransferase", "gene_name": "OSGEP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07814-1", "protein_name": "Bifunctional glutamate/proline--tRNA ligase", "gene_name": "EPRS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3C4-1", "protein_name": "EKC/KEOPS complex subunit TPRKB", "gene_name": "TPRKB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5T6V5-1", "protein_name": "Queuosine 5'-phosphate N-glycosylase/hydrolase", "gene_name": "QNG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXR0-1", "protein_name": "Queuine tRNA-ribosyltransferase catalytic subunit 1", "gene_name": "QTRT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96FX7-1", "protein_name": "tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A", "gene_name": "TRMT61A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TBZ6-1", "protein_name": "tRNA methyltransferase 10 homolog A", "gene_name": "TRMT10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYL2-1", "protein_name": "Probable tRNA (uracil-O(2)-)-methyltransferase", "gene_name": "TRMT44", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBP6-1", "protein_name": "tRNA (guanine-N(7)-)-methyltransferase", "gene_name": "METTL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TEA1-1", "protein_name": "tRNA (cytosine(72)-C(5))-methyltransferase NSUN6", "gene_name": "NSUN6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NX74-1", "protein_name": "tRNA-dihydrouridine(20) synthase [NAD(P)+]-like", "gene_name": "DUS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57081-1", "protein_name": "tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit WDR4", "gene_name": "WDR4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6YHU6-1", "protein_name": "tRNA (32-2'-O)-methyltransferase regulator THADA", "gene_name": "THADA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NUP7-1", "protein_name": "tRNA:m(4)X modification enzyme TRM13 homolog", "gene_name": "TRMT13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUB4-1", "protein_name": "tRNA-specific adenosine deaminase 1", "gene_name": "ADAT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z6V5-1", "protein_name": "tRNA-specific adenosine-34 deaminase catalytic subunit ADAT2", "gene_name": "ADAT2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "O14717", "url": "https://www.uniprot.org/uniprotkb/O14717" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.18567810", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 38 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A functional proteomics approach links the ubiquitin-related modifier Urm1 to a tRNA modification pathway.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2008", "authors": "Schlieker CD, Van der Veen AG, Damon JR, Spooner E, Ploegh HL", "reference": { "type": "PubMed", "id": "19017811", "url": "https://pubmed.ncbi.nlm.nih.gov/19017811" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O14717-1", "protein_name": "tRNA (cytosine(38)-C(5))-methyltransferase", "gene_name": "TRDMT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BT7-1", "protein_name": "tRNA (carboxymethyluridine(34)-5-O)-methyltransferase ALKBH8", "gene_name": "ALKBH8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UI30-1", "protein_name": "Multifunctional methyltransferase subunit TRM112-like protein", "gene_name": "TRMT112", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40554-1", "protein_name": "Ubiquitin-related modifier 1", "gene_name": "URM1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q08J23-1", "protein_name": "RNA cytosine C(5)-methyltransferase NSUN2", "gene_name": "NSUN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZE2-1", "protein_name": "tRNA pseudouridine(38/39) synthase", "gene_name": "PUS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96PZ0-1", "protein_name": "Pseudouridylate synthase 7 homolog", "gene_name": "PUS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H974-1", "protein_name": "Queuine tRNA-ribosyltransferase accessory subunit 2", "gene_name": "QTRT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NWX6-1", "protein_name": "Probable tRNA(His) guanylyltransferase", "gene_name": "THG1L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5VV42-1", "protein_name": "Threonylcarbamoyladenosine tRNA methylthiotransferase", "gene_name": "CDKAL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14657-1", "protein_name": "EKC/KEOPS complex subunit LAGE3", "gene_name": "LAGE3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P272-1", "protein_name": "Probable tRNA methyltransferase 9B", "gene_name": "TRMT9B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2VPK5-1", "protein_name": "Cytoplasmic tRNA 2-thiolation protein 2", "gene_name": "CTU2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z7A3-1", "protein_name": "Cytoplasmic tRNA 2-thiolation protein 1", "gene_name": "CTU1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTM9-1", "protein_name": "Ubiquitin-related modifier 1", "gene_name": "URM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NXH9-1", "protein_name": "tRNA (guanine(26)-N(2))-dimethyltransferase", "gene_name": "TRMT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z4G4-1", "protein_name": "tRNA (guanine(10)-N(2))-methyltransferase TRMT11", "gene_name": "TRMT11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EY9-1", "protein_name": "tRNA-specific adenosine-34 deaminase regulatory subunit ADAT3", "gene_name": "ADAT3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q3U308-1", "protein_name": "Cytoplasmic tRNA 2-thiolation protein 2", "gene_name": "Ctu2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9BXV9-1", "protein_name": "EKC/KEOPS complex subunit GON7", "gene_name": "GON7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UET6-1", "protein_name": "tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase", "gene_name": "FTSJ1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UJA5-1", "protein_name": "tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6", "gene_name": "TRMT6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96S44-1", "protein_name": "EKC/KEOPS complex subunit TP53RK", "gene_name": "TP53RK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H3H1-1", "protein_name": "tRNA dimethylallyltransferase", "gene_name": "TRIT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6DC53-1", "protein_name": "Cytoplasmic tRNA 2-thiolation protein 2", "gene_name": "ctu2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q9NPF4-1", "protein_name": "tRNA N6-adenosine threonylcarbamoyltransferase", "gene_name": "OSGEP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07814-1", "protein_name": "Bifunctional glutamate/proline--tRNA ligase", "gene_name": "EPRS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3C4-1", "protein_name": "EKC/KEOPS complex subunit TPRKB", "gene_name": "TPRKB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5T6V5-1", "protein_name": "Queuosine 5'-phosphate N-glycosylase/hydrolase", "gene_name": "QNG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXR0-1", "protein_name": "Queuine tRNA-ribosyltransferase catalytic subunit 1", "gene_name": "QTRT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96FX7-1", "protein_name": "tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A", "gene_name": "TRMT61A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TBZ6-1", "protein_name": "tRNA methyltransferase 10 homolog A", "gene_name": "TRMT10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYL2-1", "protein_name": "Probable tRNA (uracil-O(2)-)-methyltransferase", "gene_name": "TRMT44", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBP6-1", "protein_name": "tRNA (guanine-N(7)-)-methyltransferase", "gene_name": "METTL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q3SZG9-1", "protein_name": "Cytoplasmic tRNA 2-thiolation protein 2", "gene_name": "CTU2", "tax_name": "Bovine" }, { "uniprot_canonical_ac": "Q8TEA1-1", "protein_name": "tRNA (cytosine(72)-C(5))-methyltransferase NSUN6", "gene_name": "NSUN6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NX74-1", "protein_name": "tRNA-dihydrouridine(20) synthase [NAD(P)+]-like", "gene_name": "DUS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57081-1", "protein_name": "tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit WDR4", "gene_name": "WDR4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95396-1", "protein_name": "Adenylyltransferase and sulfurtransferase MOCS3", "gene_name": "MOCS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6YHU6-1", "protein_name": "tRNA (32-2'-O)-methyltransferase regulator THADA", "gene_name": "THADA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q3B7U4-1", "protein_name": "Cytoplasmic tRNA 2-thiolation protein 2", "gene_name": "Ctu2", "tax_name": "Rat" }, { "uniprot_canonical_ac": "Q9NUP7-1", "protein_name": "tRNA:m(4)X modification enzyme TRM13 homolog", "gene_name": "TRMT13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUB4-1", "protein_name": "tRNA-specific adenosine deaminase 1", "gene_name": "ADAT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z6V5-1", "protein_name": "tRNA-specific adenosine-34 deaminase catalytic subunit ADAT2", "gene_name": "ADAT2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "O14717", "url": "https://www.uniprot.org/uniprotkb/O14717" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.19017811", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 44 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Queuosine formation in eukaryotic tRNA occurs via a mitochondria-localized heteromeric transglycosylase.", "journal": "The Journal of biological chemistry", "date": "2009", "authors": "Boland C, Hayes P, Santa-Maria I, Nishimura S, Kelly VP", "reference": { "type": "PubMed", "id": "19414587", "url": "https://pubmed.ncbi.nlm.nih.gov/19414587" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O14717-1", "protein_name": "tRNA (cytosine(38)-C(5))-methyltransferase", "gene_name": "TRDMT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BT7-1", "protein_name": "tRNA (carboxymethyluridine(34)-5-O)-methyltransferase ALKBH8", "gene_name": "ALKBH8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UI30-1", "protein_name": "Multifunctional methyltransferase subunit TRM112-like protein", "gene_name": "TRMT112", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08J23-1", "protein_name": "RNA cytosine C(5)-methyltransferase NSUN2", "gene_name": "NSUN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZE2-1", "protein_name": "tRNA pseudouridine(38/39) synthase", "gene_name": "PUS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96PZ0-1", "protein_name": "Pseudouridylate synthase 7 homolog", "gene_name": "PUS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "B8ZXI1-1", "protein_name": "Queuine tRNA-ribosyltransferase accessory subunit 2", "gene_name": "Qtrt2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9H974-1", "protein_name": "Queuine tRNA-ribosyltransferase accessory subunit 2", "gene_name": "QTRT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NWX6-1", "protein_name": "Probable tRNA(His) guanylyltransferase", "gene_name": "THG1L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5VV42-1", "protein_name": "Threonylcarbamoyladenosine tRNA methylthiotransferase", "gene_name": "CDKAL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14657-1", "protein_name": "EKC/KEOPS complex subunit LAGE3", "gene_name": "LAGE3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P272-1", "protein_name": "Probable tRNA methyltransferase 9B", "gene_name": "TRMT9B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2VPK5-1", "protein_name": "Cytoplasmic tRNA 2-thiolation protein 2", "gene_name": "CTU2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z7A3-1", "protein_name": "Cytoplasmic tRNA 2-thiolation protein 1", "gene_name": "CTU1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTM9-1", "protein_name": "Ubiquitin-related modifier 1", "gene_name": "URM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NXH9-1", "protein_name": "tRNA (guanine(26)-N(2))-dimethyltransferase", "gene_name": "TRMT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z4G4-1", "protein_name": "tRNA (guanine(10)-N(2))-methyltransferase TRMT11", "gene_name": "TRMT11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EY9-1", "protein_name": "tRNA-specific adenosine-34 deaminase regulatory subunit ADAT3", "gene_name": "ADAT3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXV9-1", "protein_name": "EKC/KEOPS complex subunit GON7", "gene_name": "GON7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UET6-1", "protein_name": "tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase", "gene_name": "FTSJ1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UJA5-1", "protein_name": "tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6", "gene_name": "TRMT6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96S44-1", "protein_name": "EKC/KEOPS complex subunit TP53RK", "gene_name": "TP53RK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H3H1-1", "protein_name": "tRNA dimethylallyltransferase", "gene_name": "TRIT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9JMA2-1", "protein_name": "Queuine tRNA-ribosyltransferase catalytic subunit 1", "gene_name": "Qtrt1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9NPF4-1", "protein_name": "tRNA N6-adenosine threonylcarbamoyltransferase", "gene_name": "OSGEP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07814-1", "protein_name": "Bifunctional glutamate/proline--tRNA ligase", "gene_name": "EPRS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3C4-1", "protein_name": "EKC/KEOPS complex subunit TPRKB", "gene_name": "TPRKB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5T6V5-1", "protein_name": "Queuosine 5'-phosphate N-glycosylase/hydrolase", "gene_name": "QNG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXR0-1", "protein_name": "Queuine tRNA-ribosyltransferase catalytic subunit 1", "gene_name": "QTRT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96FX7-1", "protein_name": "tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A", "gene_name": "TRMT61A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TBZ6-1", "protein_name": "tRNA methyltransferase 10 homolog A", "gene_name": "TRMT10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYL2-1", "protein_name": "Probable tRNA (uracil-O(2)-)-methyltransferase", "gene_name": "TRMT44", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBP6-1", "protein_name": "tRNA (guanine-N(7)-)-methyltransferase", "gene_name": "METTL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TEA1-1", "protein_name": "tRNA (cytosine(72)-C(5))-methyltransferase NSUN6", "gene_name": "NSUN6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NX74-1", "protein_name": "tRNA-dihydrouridine(20) synthase [NAD(P)+]-like", "gene_name": "DUS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57081-1", "protein_name": "tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit WDR4", "gene_name": "WDR4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6YHU6-1", "protein_name": "tRNA (32-2'-O)-methyltransferase regulator THADA", "gene_name": "THADA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NUP7-1", "protein_name": "tRNA:m(4)X modification enzyme TRM13 homolog", "gene_name": "TRMT13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUB4-1", "protein_name": "tRNA-specific adenosine deaminase 1", "gene_name": "ADAT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z6V5-1", "protein_name": "tRNA-specific adenosine-34 deaminase catalytic subunit ADAT2", "gene_name": "ADAT2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "O14717", "url": "https://www.uniprot.org/uniprotkb/O14717" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.19414587", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 40 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Mammalian ALKBH8 possesses tRNA methyltransferase activity required for the biogenesis of multiple wobble uridine modifications implicated in translational decoding.", "journal": "Molecular and cellular biology", "date": "2010", "authors": "Songe-Moller L, van den Born E, Leihne V, Vagbo CB, Kristoffersen T, Krokan HE, Kirpekar F, Falnes PO, Klungland A", "reference": { "type": "PubMed", "id": "20123966", "url": "https://pubmed.ncbi.nlm.nih.gov/20123966" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O14717-1", "protein_name": "tRNA (cytosine(38)-C(5))-methyltransferase", "gene_name": "TRDMT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BT7-1", "protein_name": "tRNA (carboxymethyluridine(34)-5-O)-methyltransferase ALKBH8", "gene_name": "ALKBH8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UI30-1", "protein_name": "Multifunctional methyltransferase subunit TRM112-like protein", "gene_name": "TRMT112", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08J23-1", "protein_name": "RNA cytosine C(5)-methyltransferase NSUN2", "gene_name": "NSUN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZE2-1", "protein_name": "tRNA pseudouridine(38/39) synthase", "gene_name": "PUS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96PZ0-1", "protein_name": "Pseudouridylate synthase 7 homolog", "gene_name": "PUS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H974-1", "protein_name": "Queuine tRNA-ribosyltransferase accessory subunit 2", "gene_name": "QTRT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NWX6-1", "protein_name": "Probable tRNA(His) guanylyltransferase", "gene_name": "THG1L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5VV42-1", "protein_name": "Threonylcarbamoyladenosine tRNA methylthiotransferase", "gene_name": "CDKAL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14657-1", "protein_name": "EKC/KEOPS complex subunit LAGE3", "gene_name": "LAGE3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P272-1", "protein_name": "Probable tRNA methyltransferase 9B", "gene_name": "TRMT9B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2VPK5-1", "protein_name": "Cytoplasmic tRNA 2-thiolation protein 2", "gene_name": "CTU2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z7A3-1", "protein_name": "Cytoplasmic tRNA 2-thiolation protein 1", "gene_name": "CTU1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTM9-1", "protein_name": "Ubiquitin-related modifier 1", "gene_name": "URM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NXH9-1", "protein_name": "tRNA (guanine(26)-N(2))-dimethyltransferase", "gene_name": "TRMT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z4G4-1", "protein_name": "tRNA (guanine(10)-N(2))-methyltransferase TRMT11", "gene_name": "TRMT11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EY9-1", "protein_name": "tRNA-specific adenosine-34 deaminase regulatory subunit ADAT3", "gene_name": "ADAT3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q80Y20-1", "protein_name": "tRNA (carboxymethyluridine(34)-5-O)-methyltransferase ALKBH8", "gene_name": "Alkbh8", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9BXV9-1", "protein_name": "EKC/KEOPS complex subunit GON7", "gene_name": "GON7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UET6-1", "protein_name": "tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase", "gene_name": "FTSJ1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UJA5-1", "protein_name": "tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6", "gene_name": "TRMT6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96S44-1", "protein_name": "EKC/KEOPS complex subunit TP53RK", "gene_name": "TP53RK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H3H1-1", "protein_name": "tRNA dimethylallyltransferase", "gene_name": "TRIT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPF4-1", "protein_name": "tRNA N6-adenosine threonylcarbamoyltransferase", "gene_name": "OSGEP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07814-1", "protein_name": "Bifunctional glutamate/proline--tRNA ligase", "gene_name": "EPRS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3C4-1", "protein_name": "EKC/KEOPS complex subunit TPRKB", "gene_name": "TPRKB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5T6V5-1", "protein_name": "Queuosine 5'-phosphate N-glycosylase/hydrolase", "gene_name": "QNG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXR0-1", "protein_name": "Queuine tRNA-ribosyltransferase catalytic subunit 1", "gene_name": "QTRT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96FX7-1", "protein_name": "tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A", "gene_name": "TRMT61A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TBZ6-1", "protein_name": "tRNA methyltransferase 10 homolog A", "gene_name": "TRMT10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYL2-1", "protein_name": "Probable tRNA (uracil-O(2)-)-methyltransferase", "gene_name": "TRMT44", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBP6-1", "protein_name": "tRNA (guanine-N(7)-)-methyltransferase", "gene_name": "METTL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TEA1-1", "protein_name": "tRNA (cytosine(72)-C(5))-methyltransferase NSUN6", "gene_name": "NSUN6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NX74-1", "protein_name": "tRNA-dihydrouridine(20) synthase [NAD(P)+]-like", "gene_name": "DUS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57081-1", "protein_name": "tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit WDR4", "gene_name": "WDR4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6YHU6-1", "protein_name": "tRNA (32-2'-O)-methyltransferase regulator THADA", "gene_name": "THADA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NUP7-1", "protein_name": "tRNA:m(4)X modification enzyme TRM13 homolog", "gene_name": "TRMT13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUB4-1", "protein_name": "tRNA-specific adenosine deaminase 1", "gene_name": "ADAT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z6V5-1", "protein_name": "tRNA-specific adenosine-34 deaminase catalytic subunit ADAT2", "gene_name": "ADAT2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "O14717", "url": "https://www.uniprot.org/uniprotkb/O14717" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.20123966", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 39 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Human AlkB homolog ABH8 Is a tRNA methyltransferase required for wobble uridine modification and DNA damage survival.", "journal": "Molecular and cellular biology", "date": "2010", "authors": "Fu D, Brophy JA, Chan CT, Atmore KA, Begley U, Paules RS, Dedon PC, Begley TJ, Samson LD", "reference": { "type": "PubMed", "id": "20308323", "url": "https://pubmed.ncbi.nlm.nih.gov/20308323" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O14717-1", "protein_name": "tRNA (cytosine(38)-C(5))-methyltransferase", "gene_name": "TRDMT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BT7-1", "protein_name": "tRNA (carboxymethyluridine(34)-5-O)-methyltransferase ALKBH8", "gene_name": "ALKBH8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UI30-1", "protein_name": "Multifunctional methyltransferase subunit TRM112-like protein", "gene_name": "TRMT112", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08J23-1", "protein_name": "RNA cytosine C(5)-methyltransferase NSUN2", "gene_name": "NSUN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZE2-1", "protein_name": "tRNA pseudouridine(38/39) synthase", "gene_name": "PUS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96PZ0-1", "protein_name": "Pseudouridylate synthase 7 homolog", "gene_name": "PUS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H974-1", "protein_name": "Queuine tRNA-ribosyltransferase accessory subunit 2", "gene_name": "QTRT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NWX6-1", "protein_name": "Probable tRNA(His) guanylyltransferase", "gene_name": "THG1L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5VV42-1", "protein_name": "Threonylcarbamoyladenosine tRNA methylthiotransferase", "gene_name": "CDKAL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14657-1", "protein_name": "EKC/KEOPS complex subunit LAGE3", "gene_name": "LAGE3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P272-1", "protein_name": "Probable tRNA methyltransferase 9B", "gene_name": "TRMT9B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2VPK5-1", "protein_name": "Cytoplasmic tRNA 2-thiolation protein 2", "gene_name": "CTU2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z7A3-1", "protein_name": "Cytoplasmic tRNA 2-thiolation protein 1", "gene_name": "CTU1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTM9-1", "protein_name": "Ubiquitin-related modifier 1", "gene_name": "URM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NXH9-1", "protein_name": "tRNA (guanine(26)-N(2))-dimethyltransferase", "gene_name": "TRMT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z4G4-1", "protein_name": "tRNA (guanine(10)-N(2))-methyltransferase TRMT11", "gene_name": "TRMT11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EY9-1", "protein_name": "tRNA-specific adenosine-34 deaminase regulatory subunit ADAT3", "gene_name": "ADAT3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXV9-1", "protein_name": "EKC/KEOPS complex subunit GON7", "gene_name": "GON7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UET6-1", "protein_name": "tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase", "gene_name": "FTSJ1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UJA5-1", "protein_name": "tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6", "gene_name": "TRMT6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96S44-1", "protein_name": "EKC/KEOPS complex subunit TP53RK", "gene_name": "TP53RK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H3H1-1", "protein_name": "tRNA dimethylallyltransferase", "gene_name": "TRIT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPF4-1", "protein_name": "tRNA N6-adenosine threonylcarbamoyltransferase", "gene_name": "OSGEP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07814-1", "protein_name": "Bifunctional glutamate/proline--tRNA ligase", "gene_name": "EPRS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3C4-1", "protein_name": "EKC/KEOPS complex subunit TPRKB", "gene_name": "TPRKB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5T6V5-1", "protein_name": "Queuosine 5'-phosphate N-glycosylase/hydrolase", "gene_name": "QNG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXR0-1", "protein_name": "Queuine tRNA-ribosyltransferase catalytic subunit 1", "gene_name": "QTRT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96FX7-1", "protein_name": "tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A", "gene_name": "TRMT61A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TBZ6-1", "protein_name": "tRNA methyltransferase 10 homolog A", "gene_name": "TRMT10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYL2-1", "protein_name": "Probable tRNA (uracil-O(2)-)-methyltransferase", "gene_name": "TRMT44", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBP6-1", "protein_name": "tRNA (guanine-N(7)-)-methyltransferase", "gene_name": "METTL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TEA1-1", "protein_name": "tRNA (cytosine(72)-C(5))-methyltransferase NSUN6", "gene_name": "NSUN6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NX74-1", "protein_name": "tRNA-dihydrouridine(20) synthase [NAD(P)+]-like", "gene_name": "DUS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57081-1", "protein_name": "tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit WDR4", "gene_name": "WDR4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6YHU6-1", "protein_name": "tRNA (32-2'-O)-methyltransferase regulator THADA", "gene_name": "THADA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NUP7-1", "protein_name": "tRNA:m(4)X modification enzyme TRM13 homolog", "gene_name": "TRMT13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUB4-1", "protein_name": "tRNA-specific adenosine deaminase 1", "gene_name": "ADAT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z6V5-1", "protein_name": "tRNA-specific adenosine-34 deaminase catalytic subunit ADAT2", "gene_name": "ADAT2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "O14717", "url": "https://www.uniprot.org/uniprotkb/O14717" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.20308323", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 38 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Characterization of the human tRNA-guanine transglycosylase: confirmation of the heterodimeric subunit structure.", "journal": "RNA (New York, N.Y.)", "date": "2010", "authors": "Chen YC, Kelly VP, Stachura SV, Garcia GA", "reference": { "type": "PubMed", "id": "20354154", "url": "https://pubmed.ncbi.nlm.nih.gov/20354154" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O14717-1", "protein_name": "tRNA (cytosine(38)-C(5))-methyltransferase", "gene_name": "TRDMT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BT7-1", "protein_name": "tRNA (carboxymethyluridine(34)-5-O)-methyltransferase ALKBH8", "gene_name": "ALKBH8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UI30-1", "protein_name": "Multifunctional methyltransferase subunit TRM112-like protein", "gene_name": "TRMT112", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08J23-1", "protein_name": "RNA cytosine C(5)-methyltransferase NSUN2", "gene_name": "NSUN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZE2-1", "protein_name": "tRNA pseudouridine(38/39) synthase", "gene_name": "PUS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96PZ0-1", "protein_name": "Pseudouridylate synthase 7 homolog", "gene_name": "PUS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H974-1", "protein_name": "Queuine tRNA-ribosyltransferase accessory subunit 2", "gene_name": "QTRT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NWX6-1", "protein_name": "Probable tRNA(His) guanylyltransferase", "gene_name": "THG1L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5VV42-1", "protein_name": "Threonylcarbamoyladenosine tRNA methylthiotransferase", "gene_name": "CDKAL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14657-1", "protein_name": "EKC/KEOPS complex subunit LAGE3", "gene_name": "LAGE3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P272-1", "protein_name": "Probable tRNA methyltransferase 9B", "gene_name": "TRMT9B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2VPK5-1", "protein_name": "Cytoplasmic tRNA 2-thiolation protein 2", "gene_name": "CTU2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z7A3-1", "protein_name": "Cytoplasmic tRNA 2-thiolation protein 1", "gene_name": "CTU1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTM9-1", "protein_name": "Ubiquitin-related modifier 1", "gene_name": "URM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NXH9-1", "protein_name": "tRNA (guanine(26)-N(2))-dimethyltransferase", "gene_name": "TRMT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z4G4-1", "protein_name": "tRNA (guanine(10)-N(2))-methyltransferase TRMT11", "gene_name": "TRMT11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EY9-1", "protein_name": "tRNA-specific adenosine-34 deaminase regulatory subunit ADAT3", "gene_name": "ADAT3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXV9-1", "protein_name": "EKC/KEOPS complex subunit GON7", "gene_name": "GON7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UET6-1", "protein_name": "tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase", "gene_name": "FTSJ1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UJA5-1", "protein_name": "tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6", "gene_name": "TRMT6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96S44-1", "protein_name": "EKC/KEOPS complex subunit TP53RK", "gene_name": "TP53RK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H3H1-1", "protein_name": "tRNA dimethylallyltransferase", "gene_name": "TRIT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPF4-1", "protein_name": "tRNA N6-adenosine threonylcarbamoyltransferase", "gene_name": "OSGEP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07814-1", "protein_name": "Bifunctional glutamate/proline--tRNA ligase", "gene_name": "EPRS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3C4-1", "protein_name": "EKC/KEOPS complex subunit TPRKB", "gene_name": "TPRKB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5T6V5-1", "protein_name": "Queuosine 5'-phosphate N-glycosylase/hydrolase", "gene_name": "QNG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXR0-1", "protein_name": "Queuine tRNA-ribosyltransferase catalytic subunit 1", "gene_name": "QTRT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96FX7-1", "protein_name": "tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A", "gene_name": "TRMT61A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TBZ6-1", "protein_name": "tRNA methyltransferase 10 homolog A", "gene_name": "TRMT10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IYL2-1", "protein_name": "Probable tRNA (uracil-O(2)-)-methyltransferase", "gene_name": "TRMT44", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBP6-1", "protein_name": "tRNA (guanine-N(7)-)-methyltransferase", "gene_name": "METTL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TEA1-1", "protein_name": "tRNA (cytosine(72)-C(5))-methyltransferase NSUN6", "gene_name": "NSUN6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NX74-1", "protein_name": "tRNA-dihydrouridine(20) synthase [NAD(P)+]-like", "gene_name": "DUS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57081-1", "protein_name": "tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit WDR4", "gene_name": "WDR4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6YHU6-1", "protein_name": "tRNA (32-2'-O)-methyltransferase regulator THADA", "gene_name": "THADA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NUP7-1", "protein_name": "tRNA:m(4)X modification enzyme TRM13 homolog", "gene_name": "TRMT13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUB4-1", "protein_name": "tRNA-specific adenosine deaminase 1", "gene_name": "ADAT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z6V5-1", "protein_name": "tRNA-specific adenosine-34 deaminase catalytic subunit ADAT2", "gene_name": "ADAT2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "O14717", "url": "https://www.uniprot.org/uniprotkb/O14717" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 279, "end_pos": 279, "sequence_org": "D", "sequence_mut": "N", "comment": "Loss of transglycosylase activity.", "evidence": [ { "database": "UniProtKB", "id": "Q9BXR0", "url": "https://www.uniprot.org/uniprotkb/Q9BXR0" }, { "database": "PubMed", "id": "20354154", "url": "https://pubmed.ncbi.nlm.nih.gov/20354154" } ], "uniprot_canonical_ac": "Q9BXR0-1" } ], "record_id": "pubmed.20354154", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 38 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] } ]