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"authors": "Shiozawa Jun, de Vega Susana, Yoshinaga Chiho, Ji Xang, Negishi Yoshifumi, Momoeda Masahiro, Nakamura Tomomi, Yoshida Hiroyuki, Kaneko Haruka, Ishijima Muneaki, Okada Yasunori", "reference": { "type": "PubMed", "id": "36241903", "url": "https://pubmed.ncbi.nlm.nih.gov/36241903" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9UHN6-1", "protein_name": "Cell surface hyaluronidase CEMIP2", "gene_name": "CEMIP2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9UHN6", "url": "https://www.uniprot.org/uniprotkb/Q9UHN6" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.36241903", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", 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"2023-09", "authors": "Narita Takuma, Tobisawa Yuki, Bobkov Andrey, Jackson Michael, Ohyama Chikara, Irie Fumitoshi, Yamaguchi Yu", "reference": { "type": "PubMed", "id": "37527776", "url": "https://pubmed.ncbi.nlm.nih.gov/37527776" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9UHN6-1", "protein_name": "Cell surface hyaluronidase CEMIP2", "gene_name": "CEMIP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5FWI3-1", "protein_name": "Cell surface hyaluronidase", "gene_name": "Cemip2", "tax_name": "Mouse" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9UHN6", "url": "https://www.uniprot.org/uniprotkb/Q9UHN6" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.37527776", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": 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"38378757", "url": "https://pubmed.ncbi.nlm.nih.gov/38378757" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9UHN6-1", "protein_name": "Cell surface hyaluronidase CEMIP2", "gene_name": "CEMIP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9DBY1-1", "protein_name": "E3 ubiquitin-protein ligase synoviolin", "gene_name": "Syvn1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q86TM6-1", "protein_name": "E3 ubiquitin-protein ligase synoviolin", "gene_name": "SYVN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5FWI3-1", "protein_name": "Cell surface hyaluronidase", "gene_name": "Cemip2", "tax_name": "Mouse" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9UHN6", "url": "https://www.uniprot.org/uniprotkb/Q9UHN6" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.38378757", "abstract": "", "glycosylation": [], 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"o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A homozygous splice-site mutation in CARS2 is associated with progressive myoclonic epilepsy.", "journal": "Neurology", "date": "2014", "authors": "Hallmann K, Zsurka G, Moskau-Hartmann S, Kirschner J, Korinthenberg R, Ruppert AK, Ozdemir O, Weber Y, Becker F, Lerche H, Elger CE, Thiele H, Nurnberg P, Sander T, Kunz WS", "reference": { "type": "PubMed", "id": "25361775", "url": "https://pubmed.ncbi.nlm.nih.gov/25361775" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9HA77-1", "protein_name": "Probable cysteine--tRNA ligase, mitochondrial", "gene_name": "CARS2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9HA77", "url": "https://www.uniprot.org/uniprotkb/Q9HA77" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.25361775", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Mutations in the mitochondrial cysteinyl-tRNA synthase gene, CARS2, lead to a severe epileptic encephalopathy and complex movement disorder.", "journal": "Journal of medical genetics", "date": "2015", "authors": "Coughlin CR 2nd, Scharer GH, Friederich MW, Yu HC, Geiger EA, Creadon-Swindell G, Collins AE, Vanlander AV, Coster RV, Powell CA, Swanson MA, Minczuk M, Van Hove JL, Shaikh TH", "reference": { "type": "PubMed", "id": "25787132", "url": "https://pubmed.ncbi.nlm.nih.gov/25787132" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9HA77-1", 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"count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Cysteinyl-tRNA synthetase governs cysteine polysulfidation and mitochondrial bioenergetics.", "journal": "Nature communications", "date": "2017-10-27", "authors": "Akaike Takaaki, Ida Tomoaki, Wei Fan-Yan, Nishida Motohiro, Kumagai Yoshito, Alam Md Morshedul, Ihara Hideshi, Sawa Tomohiro, Matsunaga Tetsuro, Kasamatsu Shingo, Nishimura Akiyuki, Morita Masanobu, Tomizawa Kazuhito, Nishimura Akira, Watanabe Satoshi, Inaba Kenji, Shima Hiroshi, Tanuma Nobuhiro, Jung Minkyung, Fujii Shigemoto, Watanabe Yasuo, Ohmuraya Masaki, Nagy P\u00e9ter, Feelisch Martin, Fukuto Jon M, Motohashi Hozumi", "reference": { "type": "PubMed", "id": "29079736", "url": "https://pubmed.ncbi.nlm.nih.gov/29079736" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9HA77-1", "protein_name": "Probable cysteine--tRNA ligase, mitochondrial", "gene_name": "CARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8BYM8-1", "protein_name": "Probable cysteine--tRNA ligase, mitochondrial", "gene_name": "Cars2", "tax_name": "Mouse" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9HA77", "url": "https://www.uniprot.org/uniprotkb/Q9HA77" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 124, "end_pos": 127, "sequence_org": "KIIK", "sequence_mut": "AIIA", "comment": "No effect on cysteine--tRNA ligase activity. Loss of cysteine persulfide synthase activity.", "evidence": [ { "database": "UniProtKB", "id": "Q9HA77", "url": "https://www.uniprot.org/uniprotkb/Q9HA77" }, { "database": "PubMed", "id": "29079736", "url": "https://pubmed.ncbi.nlm.nih.gov/29079736" } ], "uniprot_canonical_ac": "Q9HA77-1" }, { "start_pos": 257, "end_pos": 257, "sequence_org": "C", "sequence_mut": "D", "comment": "No effect on cysteine persulfide synthase activity; when associated with D-78. Loss of cysteine--tRNA ligase activity; when associated with D-78.", "evidence": [ { "database": "UniProtKB", "id": "Q9HA77", "url": "https://www.uniprot.org/uniprotkb/Q9HA77" }, { "database": "PubMed", "id": "29079736", "url": "https://pubmed.ncbi.nlm.nih.gov/29079736" } ], "uniprot_canonical_ac": "Q9HA77-1" }, { "start_pos": 317, "end_pos": 320, "sequence_org": "KMSK", "sequence_mut": "AMSA", "comment": "No effect on cysteine--tRNA ligase activity. Loss of cysteine persulfide synthase activity.", "evidence": [ { "database": "UniProtKB", "id": "Q9HA77", "url": "https://www.uniprot.org/uniprotkb/Q9HA77" }, { "database": "PubMed", "id": "29079736", "url": "https://pubmed.ncbi.nlm.nih.gov/29079736" } ], "uniprot_canonical_ac": "Q9HA77-1" }, { "start_pos": 78, "end_pos": 78, "sequence_org": "C", "sequence_mut": "D", "comment": "No effect on cysteine persulfide synthase activity; when associated with D-257. 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}, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Isolation of two cDNAs encoding functional human cytoplasmic cysteinyl-tRNA synthetase.", "journal": "Biological chemistry", "date": "2001", "authors": "Davidson E, Caffarella J, Vitseva O, Hou YM, King MP", "reference": { "type": 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"count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": 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"tax_name": "Human" }, { "uniprot_canonical_ac": "P26639-1", "protein_name": "Threonine--tRNA ligase 1, cytoplasmic", "gene_name": "TARS1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P56192", "url": "https://www.uniprot.org/uniprotkb/P56192" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.16906134", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 25 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { 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"Dissection of the structural organization of the aminoacyl-tRNA synthetase complex.", "journal": "J. Biol. Chem.", "date": "2009", "authors": "Kaminska M, Havrylenko S, Decottignies P, Gillet S, Le Marechal P, Negrutskii B, Mirande M", "reference": { "type": "PubMed", "id": "19131329", "url": "https://pubmed.ncbi.nlm.nih.gov/19131329" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P56192-1", "protein_name": "Methionine--tRNA ligase, cytoplasmic", "gene_name": "MARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P54136-1", "protein_name": "Arginine--tRNA ligase, cytoplasmic", "gene_name": "RARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41252-1", "protein_name": "Isoleucine--tRNA ligase, cytoplasmic", "gene_name": "IARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12904-1", "protein_name": "Aminoacyl tRNA synthase complex-interacting multifunctional protein 1", "gene_name": "AIMP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13155-1", "protein_name": "Aminoacyl tRNA synthase complex-interacting multifunctional protein 2", "gene_name": "AIMP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47897-1", "protein_name": "Glutamine--tRNA ligase", "gene_name": "QARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14868-1", "protein_name": "Aspartate--tRNA ligase, cytoplasmic", "gene_name": "DARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15046-1", "protein_name": "Lysine--tRNA ligase", "gene_name": "KARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43324-1", "protein_name": "Eukaryotic translation elongation factor 1 epsilon-1", "gene_name": "EEF1E1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07814-1", "protein_name": "Bifunctional glutamate/proline--tRNA ligase", "gene_name": "EPRS1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P56192", "url": "https://www.uniprot.org/uniprotkb/P56192" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.19131329", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 10 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Dynamic Organization of Aminoacyl-tRNA Synthetase Complexes in the Cytoplasm of Human Cells.", "journal": "J. Biol. Chem.", "date": "2009", "authors": "Kaminska Monika, Havrylenko Svitlana, Decottignies Paulette, Le Mar\u00e9chal Pierre, Negrutskii Boris, Mirande Marc", "reference": { "type": "PubMed", "id": "19289464", "url": "https://pubmed.ncbi.nlm.nih.gov/19289464" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P56192-1", "protein_name": "Methionine--tRNA ligase, cytoplasmic", "gene_name": "MARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P54136-1", "protein_name": "Arginine--tRNA ligase, cytoplasmic", "gene_name": "RARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41252-1", "protein_name": "Isoleucine--tRNA ligase, cytoplasmic", "gene_name": "IARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12904-1", "protein_name": "Aminoacyl tRNA synthase complex-interacting multifunctional protein 1", "gene_name": "AIMP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13155-1", "protein_name": "Aminoacyl tRNA synthase complex-interacting 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"uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Deep phenotyping of MARS1 (interstitial lung and liver disease) and LARS1 (infantile liver failure syndrome 1) recessive multisystemic disease using Human Phenotype Ontology annotation: Overlap and differences. Case report and review of literature.", "journal": "European journal of medical genetics", "date": "2021", "authors": "La Fay C, Hoebeke C, Juzaud M, Spraul A, Heux P, Dubus JC, Hadchouel A, Fabre A", "reference": { "type": "PubMed", "id": "34496286", "url": "https://pubmed.ncbi.nlm.nih.gov/34496286" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P56192-1", "protein_name": "Methionine--tRNA ligase, cytoplasmic", "gene_name": "MARS1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P56192", "url": "https://www.uniprot.org/uniprotkb/P56192" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.34496286", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 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"https://pubmed.ncbi.nlm.nih.gov/34585293" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P56192-1", "protein_name": "Methionine--tRNA ligase, cytoplasmic", "gene_name": "MARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7L3T8-1", "protein_name": "Probable proline--tRNA ligase, mitochondrial", "gene_name": "PARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5JTZ9-1", "protein_name": "Alanine--tRNA ligase, mitochondrial", "gene_name": "AARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23381-1", "protein_name": "Tryptophan--tRNA ligase, cytoplasmic", "gene_name": "WARS1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P56192", "url": "https://www.uniprot.org/uniprotkb/P56192" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.34585293", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ 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"o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Studies on human erythrocyte inorganic pyrophosphatase.", "journal": "Annals of human genetics", "date": "1974", "authors": "Fisher RA, Turner BM, Dorkin HL, Harris H", "reference": { "type": "PubMed", "id": "4130389", "url": "https://pubmed.ncbi.nlm.nih.gov/4130389" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P56192-1", "protein_name": "Methionine--tRNA ligase, cytoplasmic", "gene_name": "MARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12081-1", "protein_name": "Histidine--tRNA ligase, cytoplasmic", "gene_name": "HARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P54136-1", "protein_name": "Arginine--tRNA ligase, cytoplasmic", "gene_name": "RARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49591-1", "protein_name": "Serine--tRNA ligase, cytoplasmic", "gene_name": "SARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41250-1", "protein_name": "Glycine--tRNA ligase", "gene_name": "GARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P54577-1", "protein_name": "Tyrosine--tRNA ligase, cytoplasmic", "gene_name": "YARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P2J5-1", "protein_name": "Leucine--tRNA ligase, cytoplasmic", "gene_name": "LARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41252-1", "protein_name": "Isoleucine--tRNA ligase, cytoplasmic", "gene_name": "IARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49588-1", "protein_name": "Alanine--tRNA ligase, cytoplasmic", "gene_name": "AARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15181-1", "protein_name": "Inorganic pyrophosphatase", "gene_name": "PPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12904-1", "protein_name": "Aminoacyl tRNA synthase complex-interacting multifunctional protein 1", "gene_name": "AIMP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13155-1", "protein_name": "Aminoacyl tRNA synthase complex-interacting multifunctional protein 2", "gene_name": "AIMP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y285-1", "protein_name": "Phenylalanine--tRNA ligase alpha subunit", "gene_name": "FARSA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47897-1", "protein_name": "Glutamine--tRNA ligase", "gene_name": "QARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14868-1", "protein_name": "Aspartate--tRNA ligase, cytoplasmic", "gene_name": "DARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15046-1", "protein_name": "Lysine--tRNA ligase", "gene_name": "KARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23381-1", "protein_name": "Tryptophan--tRNA ligase, cytoplasmic", "gene_name": "WARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43324-1", "protein_name": "Eukaryotic translation elongation factor 1 epsilon-1", "gene_name": "EEF1E1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26640-1", "protein_name": "Valine--tRNA ligase", "gene_name": "VARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07814-1", "protein_name": "Bifunctional glutamate/proline--tRNA ligase", "gene_name": "EPRS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43776-1", "protein_name": "Asparagine--tRNA ligase, cytoplasmic", "gene_name": "NARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49589-1", "protein_name": "Cysteine--tRNA ligase, cytoplasmic", "gene_name": "CARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NSD9-1", "protein_name": "Phenylalanine--tRNA ligase beta subunit", "gene_name": "FARSB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26639-1", "protein_name": "Threonine--tRNA ligase 1, cytoplasmic", "gene_name": "TARS1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P56192", "url": "https://www.uniprot.org/uniprotkb/P56192" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.4130389", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 24 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Purification and some properties of inorganic pyrophosphatase from human erythrocytes.", "journal": "The Journal of biological chemistry", "date": "1967", "authors": "Pynes GD, Younathan ES", "reference": { "type": "PubMed", "id": "6022858", "url": "https://pubmed.ncbi.nlm.nih.gov/6022858" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P56192-1", "protein_name": "Methionine--tRNA ligase, cytoplasmic", "gene_name": "MARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12081-1", "protein_name": 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"tax_name": "Human" }, { "uniprot_canonical_ac": "P26639-1", "protein_name": "Threonine--tRNA ligase 1, cytoplasmic", "gene_name": "TARS1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P56192", "url": "https://www.uniprot.org/uniprotkb/P56192" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.6022858", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 24 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { 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"database": "UniProtKB", "id": "P56192", "url": "https://www.uniprot.org/uniprotkb/P56192" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.656444", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 24 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": 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}, { "uniprot_canonical_ac": "P07814-1", "protein_name": "Bifunctional glutamate/proline--tRNA ligase", "gene_name": "EPRS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43776-1", "protein_name": "Asparagine--tRNA ligase, cytoplasmic", "gene_name": "NARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49589-1", "protein_name": "Cysteine--tRNA ligase, cytoplasmic", "gene_name": "CARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NSD9-1", "protein_name": "Phenylalanine--tRNA ligase beta subunit", "gene_name": "FARSB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26639-1", "protein_name": "Threonine--tRNA ligase 1, cytoplasmic", "gene_name": "TARS1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P56192", "url": "https://www.uniprot.org/uniprotkb/P56192" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": 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"count": 24 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { 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"Human" }, { "uniprot_canonical_ac": "P14868-1", "protein_name": "Aspartate--tRNA ligase, cytoplasmic", "gene_name": "DARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15046-1", "protein_name": "Lysine--tRNA ligase", "gene_name": "KARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23381-1", "protein_name": "Tryptophan--tRNA ligase, cytoplasmic", "gene_name": "WARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43324-1", "protein_name": "Eukaryotic translation elongation factor 1 epsilon-1", "gene_name": "EEF1E1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26640-1", "protein_name": "Valine--tRNA ligase", "gene_name": "VARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07814-1", "protein_name": "Bifunctional glutamate/proline--tRNA ligase", "gene_name": "EPRS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43776-1", "protein_name": "Asparagine--tRNA ligase, cytoplasmic", "gene_name": "NARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49589-1", "protein_name": "Cysteine--tRNA ligase, cytoplasmic", "gene_name": "CARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NSD9-1", "protein_name": "Phenylalanine--tRNA ligase beta subunit", "gene_name": "FARSB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26639-1", "protein_name": "Threonine--tRNA ligase 1, cytoplasmic", "gene_name": "TARS1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P56192", "url": "https://www.uniprot.org/uniprotkb/P56192" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.8052601", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 24 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { 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"protein_name": "Inorganic pyrophosphatase", "gene_name": "PPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12904-1", "protein_name": "Aminoacyl tRNA synthase complex-interacting multifunctional protein 1", "gene_name": "AIMP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13155-1", "protein_name": "Aminoacyl tRNA synthase complex-interacting multifunctional protein 2", "gene_name": "AIMP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y285-1", "protein_name": "Phenylalanine--tRNA ligase alpha subunit", "gene_name": "FARSA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47897-1", "protein_name": "Glutamine--tRNA ligase", "gene_name": "QARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14868-1", "protein_name": "Aspartate--tRNA ligase, cytoplasmic", "gene_name": "DARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15046-1", "protein_name": "Lysine--tRNA ligase", "gene_name": "KARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23381-1", "protein_name": "Tryptophan--tRNA ligase, cytoplasmic", "gene_name": "WARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43324-1", "protein_name": "Eukaryotic translation elongation factor 1 epsilon-1", "gene_name": "EEF1E1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26640-1", "protein_name": "Valine--tRNA ligase", "gene_name": "VARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07814-1", "protein_name": "Bifunctional glutamate/proline--tRNA ligase", "gene_name": "EPRS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43776-1", "protein_name": "Asparagine--tRNA ligase, cytoplasmic", "gene_name": "NARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49589-1", "protein_name": "Cysteine--tRNA ligase, cytoplasmic", "gene_name": "CARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NSD9-1", "protein_name": "Phenylalanine--tRNA ligase beta subunit", "gene_name": "FARSB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26639-1", "protein_name": "Threonine--tRNA ligase 1, cytoplasmic", "gene_name": "TARS1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P56192", "url": "https://www.uniprot.org/uniprotkb/P56192" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.8428657", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 25 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 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"o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Expression of human aspartyl-tRNA synthetase in Escherichia coli. Functional analysis of the N-terminal putative amphiphilic helix.", "journal": "The Journal of biological chemistry", "date": "1993", "authors": "Escalante C, Yang DC", "reference": { "type": "PubMed", "id": "8449960", "url": "https://pubmed.ncbi.nlm.nih.gov/8449960" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P56192-1", "protein_name": "Methionine--tRNA ligase, cytoplasmic", "gene_name": "MARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12081-1", "protein_name": "Histidine--tRNA ligase, cytoplasmic", "gene_name": "HARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P54136-1", "protein_name": "Arginine--tRNA ligase, cytoplasmic", "gene_name": "RARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49591-1", "protein_name": "Serine--tRNA ligase, cytoplasmic", "gene_name": "SARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41250-1", "protein_name": "Glycine--tRNA ligase", "gene_name": "GARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P54577-1", "protein_name": "Tyrosine--tRNA ligase, cytoplasmic", "gene_name": "YARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P2J5-1", "protein_name": "Leucine--tRNA ligase, cytoplasmic", "gene_name": "LARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41252-1", "protein_name": "Isoleucine--tRNA ligase, cytoplasmic", "gene_name": "IARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49588-1", "protein_name": "Alanine--tRNA ligase, cytoplasmic", "gene_name": "AARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15181-1", "protein_name": "Inorganic pyrophosphatase", "gene_name": "PPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12904-1", "protein_name": "Aminoacyl tRNA synthase complex-interacting multifunctional protein 1", "gene_name": "AIMP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13155-1", "protein_name": "Aminoacyl tRNA synthase complex-interacting multifunctional protein 2", "gene_name": "AIMP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y285-1", "protein_name": "Phenylalanine--tRNA ligase alpha subunit", "gene_name": "FARSA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47897-1", "protein_name": "Glutamine--tRNA ligase", "gene_name": "QARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14868-1", "protein_name": "Aspartate--tRNA ligase, cytoplasmic", "gene_name": "DARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15046-1", "protein_name": "Lysine--tRNA ligase", "gene_name": "KARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23381-1", "protein_name": "Tryptophan--tRNA ligase, cytoplasmic", "gene_name": "WARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43324-1", "protein_name": "Eukaryotic translation elongation factor 1 epsilon-1", "gene_name": "EEF1E1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26640-1", "protein_name": "Valine--tRNA ligase", "gene_name": "VARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07814-1", "protein_name": "Bifunctional glutamate/proline--tRNA ligase", "gene_name": "EPRS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43776-1", "protein_name": "Asparagine--tRNA ligase, cytoplasmic", "gene_name": "NARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49589-1", "protein_name": "Cysteine--tRNA ligase, cytoplasmic", "gene_name": "CARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NSD9-1", "protein_name": "Phenylalanine--tRNA ligase beta subunit", "gene_name": "FARSB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26639-1", "protein_name": "Threonine--tRNA ligase 1, cytoplasmic", "gene_name": "TARS1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P56192", "url": "https://www.uniprot.org/uniprotkb/P56192" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.8449960", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 24 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": 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"https://pubmed.ncbi.nlm.nih.gov/8921912" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P56192-1", "protein_name": "Methionine--tRNA ligase, cytoplasmic", "gene_name": "MARS1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P56192", "url": "https://www.uniprot.org/uniprotkb/P56192" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.8921912", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Human cytosolic asparaginyl-tRNA synthetase: cDNA sequence, functional expression in Escherichia coli and characterization as human autoantigen.", "journal": "Nucleic acids research", "date": "1998", "authors": "Beaulande M, Tarbouriech N, Hartlein M", "reference": { "type": "PubMed", "id": "9421509", "url": "https://pubmed.ncbi.nlm.nih.gov/9421509" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P56192-1", "protein_name": "Methionine--tRNA ligase, cytoplasmic", "gene_name": "MARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12081-1", "protein_name": "Histidine--tRNA ligase, cytoplasmic", "gene_name": "HARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Identification and characterization of TMEM33 as a reticulon-binding protein.", "journal": "The Kobe journal of medical sciences", "date": "2014-11-06", "authors": "Urade Takeshi, Yamamoto Yasunori, Zhang Xia, Ku Yonson, Sakisaka Toshiaki", "reference": { "type": "PubMed", "id": "25612671", "url": "https://pubmed.ncbi.nlm.nih.gov/25612671" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P57088-1", "protein_name": "Transmembrane protein 33", "gene_name": "TMEM33", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NQC3-1", "protein_name": "Reticulon-4", "gene_name": "RTN4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15041-1", "protein_name": "ADP-ribosylation factor-like protein 6-interacting protein 1", "gene_name": "ARL6IP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9ES97-1", "protein_name": "Reticulon-3", "gene_name": "Rtn3", 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MacDonald Ryan B, Kim Hyejeong R, Wilson Heather L, van Eeden Fredericus J M, Armesilla Angel L, Chico Timothy J A, Wilkinson Robert N", "reference": { "type": "PubMed", "id": "30760708", "url": "https://pubmed.ncbi.nlm.nih.gov/30760708" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P57088-1", "protein_name": "Transmembrane protein 33", "gene_name": "TMEM33", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P57088", "url": "https://www.uniprot.org/uniprotkb/P57088" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.30760708", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", 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Mok S, de Souza L, Martin A, Tsui FW", "reference": { "type": "PubMed", "id": "8406012", "url": "https://pubmed.ncbi.nlm.nih.gov/8406012" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P12081-1", "protein_name": "Histidine--tRNA ligase, cytoplasmic", "gene_name": "HARS1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P12081", "url": "https://www.uniprot.org/uniprotkb/P12081" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.8406012", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", 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"THOC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86V81-1", "protein_name": "THO complex subunit 4", "gene_name": "ALYREF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13838-1", "protein_name": "Spliceosome RNA helicase DDX39B", "gene_name": "DDX39B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96FV9-1", "protein_name": "THO complex subunit 1", "gene_name": "THOC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13769-1", "protein_name": "THO complex subunit 5", "gene_name": "THOC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NI27-1", "protein_name": "THO complex subunit 2", "gene_name": "THOC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6I9Y2-1", "protein_name": "THO complex subunit 7", "gene_name": "THOC7", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q96J01", "url": "https://www.uniprot.org/uniprotkb/Q96J01" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.15833825", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 8 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 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"PLoS pathogens", "date": "2008", "authors": "Boyne JR, Colgan KJ, Whitehouse A", "reference": { "type": "PubMed", "id": "18974867", "url": "https://pubmed.ncbi.nlm.nih.gov/18974867" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q96J01-1", "protein_name": "THO complex subunit 3", "gene_name": "THOC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86W42-1", "protein_name": "THO complex subunit 6", "gene_name": "THOC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86V81-1", "protein_name": "THO complex subunit 4", "gene_name": "ALYREF", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13838-1", "protein_name": "Spliceosome RNA helicase DDX39B", "gene_name": "DDX39B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96FV9-1", "protein_name": "THO complex subunit 1", "gene_name": "THOC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13769-1", "protein_name": "THO complex subunit 5", "gene_name": "THOC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NI27-1", "protein_name": "THO complex subunit 2", "gene_name": "THOC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6I9Y2-1", "protein_name": "THO complex subunit 7", "gene_name": "THOC7", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q96J01", "url": "https://www.uniprot.org/uniprotkb/Q96J01" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.18974867", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 8 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": 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"count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A novel nonsense variant in REEP6 is involved in a sporadic rod-cone dystrophy case.", "journal": "Clin. Genet.", "date": "2018", "authors": "Mejecase C, Mohand-Said S, El Shamieh S, Antonio A, Condroyer C, Blanchard S, Letexier M, Saraiva JP, Sahel JA, Audo I, Zeitz C", "reference": { "type": "PubMed", "id": "29120066", "url": "https://pubmed.ncbi.nlm.nih.gov/29120066" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q96J01-1", "protein_name": "THO complex subunit 3", "gene_name": "THOC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99614-1", "protein_name": "Tetratricopeptide repeat protein 1", "gene_name": "TTC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95996-1", "protein_name": "Adenomatous polyposis coli protein 2", "gene_name": "APC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96HR9-1", "protein_name": "Receptor expression-enhancing protein 6", "gene_name": "REEP6", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q96J01", "url": 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transcription-export complex reveals a hub for multivalent interactions.", "journal": "eLife", "date": "2020-11-16", "authors": "P\u00fchringer Thomas, Hohmann Ulrich, Fin Laura, Pacheco-Fiallos Bel\u00e9n, Schellhaas Ulla, Brennecke Julius, Plaschka Clemens", "reference": { "type": "PubMed", "id": "33191911", "url": "https://pubmed.ncbi.nlm.nih.gov/33191911" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q96J01-1", "protein_name": "THO complex subunit 3", "gene_name": "THOC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86W42-1", "protein_name": "THO complex subunit 6", "gene_name": "THOC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13838-1", "protein_name": "Spliceosome RNA helicase DDX39B", "gene_name": "DDX39B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96FV9-1", "protein_name": "THO complex subunit 1", "gene_name": "THOC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13769-1", "protein_name": "THO complex subunit 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"n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Kinetic analysis of peptide binding to the TAP transport complex: evidence for structural rearrangements induced by substrate binding.", "journal": "Journal of molecular biology", "date": "1999", "authors": "Neumann L, Tampe R", "reference": { "type": "PubMed", "id": "10600378", "url": "https://pubmed.ncbi.nlm.nih.gov/10600378" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q03519-1", "protein_name": "Antigen peptide transporter 2", "gene_name": "TAP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11021-1", "protein_name": "Endoplasmic reticulum chaperone BiP", "gene_name": "HSPA5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14457-1", "protein_name": "Beclin-1", "gene_name": "BECN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30511-1", "protein_name": "HLA class I histocompatibility antigen, alpha chain F", "gene_name": "HLA-F", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13747-1", "protein_name": "HLA class I histocompatibility antigen, alpha chain E", "gene_name": "HLA-E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17693-1", "protein_name": "HLA class I histocompatibility antigen, alpha chain G", "gene_name": "HLA-G", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99570-1", "protein_name": "Phosphoinositide 3-kinase regulatory subunit 4", "gene_name": "PIK3R4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94979-1", "protein_name": "Protein transport protein Sec31A", "gene_name": "SEC31A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55735-1", "protein_name": "Protein SEC13 homolog", "gene_name": "SEC13", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95487-1", "protein_name": "Protein transport protein Sec24B", "gene_name": "SEC24B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6B6-1", "protein_name": "Small COPII coat GTPase SAR1B", "gene_name": "SAR1B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10321-1", "protein_name": "HLA class I histocompatibility antigen, C alpha chain", "gene_name": "HLA-C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04439-1", "protein_name": "HLA class I histocompatibility antigen, A alpha chain", "gene_name": "HLA-A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27824-1", "protein_name": "Calnexin", "gene_name": "CANX", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15533-1", "protein_name": "Tapasin", "gene_name": "TAPBP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61769-1", "protein_name": "Beta-2-microglobulin", "gene_name": "B2M", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NEB9-1", "protein_name": "Phosphatidylinositol 3-kinase catalytic subunit type 3", "gene_name": "PIK3C3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51572-1", "protein_name": "B-cell receptor-associated protein 31", "gene_name": "BCAP31", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZNE5-1", "protein_name": "Beclin 1-associated autophagy-related key regulator", "gene_name": "ATG14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53992-1", "protein_name": "Protein transport protein Sec24C", "gene_name": "SEC24C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15436-1", "protein_name": "Protein transport protein Sec23A", "gene_name": "SEC23A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q03518-1", "protein_name": "Antigen peptide transporter 1", "gene_name": "TAP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94855-1", "protein_name": "Protein transport protein Sec24D", "gene_name": "SEC24D", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95486-1", "protein_name": "Protein transport protein Sec24A", "gene_name": "SEC24A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01893-1", "protein_name": "Putative HLA class I histocompatibility antigen, alpha chain H", "gene_name": "HLA-H", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P179-1", "protein_name": "Endoplasmic reticulum aminopeptidase 2", "gene_name": "ERAP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NZ08-1", "protein_name": "Endoplasmic reticulum aminopeptidase 1", "gene_name": "ERAP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30101-1", "protein_name": "Protein disulfide-isomerase A3", "gene_name": "PDIA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27797-1", "protein_name": "Calreticulin", "gene_name": "CALR", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01889-1", "protein_name": "HLA class I histocompatibility antigen, B alpha chain", "gene_name": "HLA-B", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q03519", "url": "https://www.uniprot.org/uniprotkb/Q03519" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.10600378", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 30 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "HLA-F is a predominantly empty, intracellular, TAP-associated MHC class Ib protein with a restricted expression pattern.", "journal": "J. Immunol.", "date": "2000", "authors": "Wainwright SD, Biro PA, Holmes CH", "reference": { "type": "PubMed", "id": "10605026", "url": "https://pubmed.ncbi.nlm.nih.gov/10605026" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q03519-1", "protein_name": "Antigen peptide transporter 2", "gene_name": "TAP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30511-1", "protein_name": "HLA class I histocompatibility antigen, alpha chain F", "gene_name": "HLA-F", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61769-1", "protein_name": "Beta-2-microglobulin", "gene_name": "B2M", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q03518-1", "protein_name": "Antigen peptide transporter 1", "gene_name": "TAP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27797-1", "protein_name": "Calreticulin", "gene_name": "CALR", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q03519", "url": "https://www.uniprot.org/uniprotkb/Q03519" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.10605026", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Functional relationship between calreticulin, calnexin, and the endoplasmic reticulum luminal domain of calnexin.", "journal": "The Journal of biological chemistry", "date": "2000", "authors": "Danilczyk UG, Cohen-Doyle MF, Williams DB", "reference": { "type": "PubMed", "id": "10777614", "url": "https://pubmed.ncbi.nlm.nih.gov/10777614" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q03519-1", "protein_name": "Antigen peptide transporter 2", "gene_name": "TAP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11021-1", "protein_name": "Endoplasmic reticulum chaperone BiP", "gene_name": "HSPA5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14457-1", "protein_name": "Beclin-1", "gene_name": "BECN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30511-1", "protein_name": "HLA class I histocompatibility antigen, alpha chain F", "gene_name": "HLA-F", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13747-1", "protein_name": "HLA class I histocompatibility antigen, alpha chain E", "gene_name": "HLA-E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17693-1", "protein_name": "HLA class I histocompatibility antigen, alpha chain G", "gene_name": "HLA-G", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99570-1", "protein_name": "Phosphoinositide 3-kinase regulatory subunit 4", "gene_name": "PIK3R4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94979-1", "protein_name": "Protein transport protein Sec31A", "gene_name": "SEC31A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55735-1", "protein_name": "Protein SEC13 homolog", "gene_name": "SEC13", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95487-1", "protein_name": "Protein transport protein Sec24B", "gene_name": "SEC24B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6B6-1", "protein_name": "Small COPII coat GTPase SAR1B", "gene_name": "SAR1B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10321-1", "protein_name": "HLA class I histocompatibility antigen, C alpha chain", "gene_name": "HLA-C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04439-1", "protein_name": "HLA class I histocompatibility antigen, A alpha chain", "gene_name": "HLA-A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27824-1", "protein_name": "Calnexin", "gene_name": "CANX", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15533-1", "protein_name": "Tapasin", "gene_name": "TAPBP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61769-1", "protein_name": "Beta-2-microglobulin", "gene_name": "B2M", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NEB9-1", "protein_name": "Phosphatidylinositol 3-kinase catalytic subunit type 3", "gene_name": "PIK3C3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51572-1", "protein_name": "B-cell receptor-associated protein 31", "gene_name": "BCAP31", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZNE5-1", "protein_name": "Beclin 1-associated autophagy-related key regulator", "gene_name": "ATG14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53992-1", "protein_name": "Protein transport protein Sec24C", "gene_name": "SEC24C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15436-1", "protein_name": "Protein transport protein Sec23A", "gene_name": "SEC23A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q03518-1", "protein_name": "Antigen peptide transporter 1", "gene_name": "TAP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94855-1", "protein_name": "Protein transport protein Sec24D", "gene_name": "SEC24D", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95486-1", "protein_name": "Protein transport protein Sec24A", "gene_name": "SEC24A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01893-1", "protein_name": "Putative HLA class I histocompatibility antigen, alpha chain H", "gene_name": "HLA-H", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P179-1", "protein_name": "Endoplasmic reticulum aminopeptidase 2", "gene_name": "ERAP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NZ08-1", "protein_name": "Endoplasmic reticulum aminopeptidase 1", "gene_name": "ERAP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30101-1", "protein_name": "Protein disulfide-isomerase A3", "gene_name": "PDIA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27797-1", "protein_name": "Calreticulin", "gene_name": "CALR", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01889-1", "protein_name": "HLA class I histocompatibility antigen, B alpha chain", "gene_name": "HLA-B", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q03519", "url": "https://www.uniprot.org/uniprotkb/Q03519" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.10777614", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 30 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The human cytomegalovirus gene product US6 inhibits ATP binding by TAP.", "journal": "EMBO J.", "date": "2001", "authors": "Hewitt E W, Gupta S S, Lehner P J", "reference": { "type": "PubMed", "id": "11157746", "url": "https://pubmed.ncbi.nlm.nih.gov/11157746" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q03519-1", "protein_name": "Antigen peptide transporter 2", "gene_name": "TAP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q03518-1", "protein_name": "Antigen peptide transporter 1", "gene_name": "TAP1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q03519", "url": "https://www.uniprot.org/uniprotkb/Q03519" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.11157746", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A role for calnexin in the assembly of the MHC class I loading complex in the endoplasmic reticulum.", "journal": "Journal of immunology (Baltimore, Md. : 1950)", "date": "2001", "authors": "Diedrich G, Bangia N, Pan M, Cresswell P", "reference": { "type": "PubMed", "id": "11160214", "url": "https://pubmed.ncbi.nlm.nih.gov/11160214" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q03519-1", "protein_name": "Antigen peptide transporter 2", "gene_name": "TAP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11021-1", "protein_name": "Endoplasmic reticulum chaperone BiP", "gene_name": "HSPA5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14457-1", "protein_name": "Beclin-1", "gene_name": "BECN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30511-1", "protein_name": "HLA class I histocompatibility antigen, alpha chain F", "gene_name": "HLA-F", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13747-1", "protein_name": "HLA class I histocompatibility antigen, alpha chain E", "gene_name": "HLA-E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17693-1", "protein_name": "HLA class I histocompatibility antigen, alpha chain G", "gene_name": "HLA-G", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99570-1", "protein_name": "Phosphoinositide 3-kinase regulatory subunit 4", "gene_name": "PIK3R4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94979-1", "protein_name": "Protein transport protein Sec31A", "gene_name": "SEC31A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55735-1", "protein_name": "Protein SEC13 homolog", "gene_name": "SEC13", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95487-1", "protein_name": "Protein transport protein Sec24B", "gene_name": "SEC24B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6B6-1", "protein_name": "Small COPII coat GTPase SAR1B", "gene_name": "SAR1B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10321-1", "protein_name": "HLA class I histocompatibility antigen, C alpha chain", "gene_name": "HLA-C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04439-1", "protein_name": "HLA class I histocompatibility antigen, A alpha chain", "gene_name": "HLA-A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27824-1", "protein_name": "Calnexin", "gene_name": "CANX", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15533-1", "protein_name": "Tapasin", "gene_name": "TAPBP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61769-1", "protein_name": "Beta-2-microglobulin", "gene_name": "B2M", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NEB9-1", "protein_name": "Phosphatidylinositol 3-kinase catalytic subunit type 3", "gene_name": "PIK3C3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51572-1", "protein_name": "B-cell receptor-associated protein 31", "gene_name": "BCAP31", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZNE5-1", "protein_name": "Beclin 1-associated autophagy-related key regulator", "gene_name": "ATG14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53992-1", "protein_name": "Protein transport protein Sec24C", "gene_name": "SEC24C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15436-1", "protein_name": "Protein transport protein Sec23A", "gene_name": "SEC23A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q03518-1", "protein_name": "Antigen peptide transporter 1", "gene_name": "TAP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94855-1", "protein_name": "Protein transport protein Sec24D", "gene_name": "SEC24D", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95486-1", "protein_name": "Protein transport protein Sec24A", "gene_name": "SEC24A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01893-1", "protein_name": "Putative HLA class I histocompatibility antigen, alpha chain H", "gene_name": "HLA-H", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P179-1", "protein_name": "Endoplasmic reticulum aminopeptidase 2", "gene_name": "ERAP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NZ08-1", "protein_name": "Endoplasmic reticulum aminopeptidase 1", "gene_name": "ERAP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30101-1", "protein_name": "Protein disulfide-isomerase A3", "gene_name": "PDIA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27797-1", "protein_name": "Calreticulin", "gene_name": "CALR", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01889-1", "protein_name": "HLA class I histocompatibility antigen, B alpha chain", "gene_name": "HLA-B", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q03519", "url": "https://www.uniprot.org/uniprotkb/Q03519" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.11160214", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 30 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { 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