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deacetylates H3 K56Ac in vivo to promote genomic stability.", "journal": "Cell cycle (Georgetown, Tex.)", "date": "2009", "authors": "Yang B, Zwaans BM, Eckersdorff M, Lombard DB", "reference": { "type": "PubMed", "id": "19597350", "url": "https://pubmed.ncbi.nlm.nih.gov/19597350" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P59941-1", "protein_name": "NAD-dependent protein deacylase sirtuin-6", "gene_name": "Sirt6", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "P59941", "url": "https://www.uniprot.org/uniprotkb/P59941" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "mutagenesis": [ { "start_pos": 133, "end_pos": 133, "sequence_org": "H", "sequence_mut": "Y", "comment": "Abolished NAD-dependent protein deacetylase, deacylase and mono-ADP-ribosyltransferase activities.", "evidence": [ { "database": "UniProtKB", "id": 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Sebastian, Geist Daniela, Wenzek Christina, Pfluger Paul Thomas, M\u00fcller Timo Dirk, Aguilar-Pimentel Juan Antonio, Amarie Oana Veronica, Becker Lore, Dragano Natalia, Garrett Lillian, H\u00f6lter Sabine Maria, Rathkolb Birgit, Rozman Jan, Spielmann Nadine, Treise Irina, Wolf Eckhard, Wurst Wolfgang, Fuchs Helmut, Gailus-Durner Valerie, Hrabe de Angelis Martin, F\u00fchrer Dagmar, Moeller Lars Christian", "reference": { "type": "PubMed", "id": "38889231", "url": "https://pubmed.ncbi.nlm.nih.gov/38889231" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P63058-1", "protein_name": "Thyroid hormone receptor alpha", "gene_name": "Thra", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P37242-1", "protein_name": "Thyroid hormone receptor beta", "gene_name": "Thrb", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "P63058", "url": "https://www.uniprot.org/uniprotkb/P63058" } ], 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complex.", "journal": "Proc. 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U.S.A.", "date": "1997", "authors": "Zamir I, Dawson J, Lavinsky RM, Glass CK, Rosenfeld MG, Lazar MA", "reference": { "type": "PubMed", "id": "9405624", "url": "https://pubmed.ncbi.nlm.nih.gov/9405624" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P63058-1", "protein_name": "Thyroid hormone receptor alpha", "gene_name": "Thra", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P37242-1", "protein_name": "Thyroid hormone receptor beta", "gene_name": "Thrb", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "O35473-1", "protein_name": "Nuclear nucleic acid-binding protein C1D", "gene_name": "C1d", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q60974-1", "protein_name": "Nuclear receptor corepressor 1", "gene_name": "Ncor1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9WU42-1", "protein_name": "Nuclear receptor corepressor 2", "gene_name": "Ncor2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q3UV55-1", "protein_name": "Nuclear receptor subfamily 1 group D member 1", "gene_name": "Nr1d1", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "P63058", "url": "https://www.uniprot.org/uniprotkb/P63058" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.9405624", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Localization of the RNA-binding proteins Staufen1 and Staufen2 at the mammalian neuromuscular junction.", "journal": "J. 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Heart and circulatory physiology", "date": "2012", "authors": "Johnson KB, Petersen-Jones H, Thompson JM, Hitomi K, Itoh M, Bakker EN, Johnson GV, Colak G, Watts SW", "reference": { "type": "PubMed", "id": "22307675", "url": "https://pubmed.ncbi.nlm.nih.gov/22307675" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8BZH1-1", "protein_name": "Protein-glutamine gamma-glutamyltransferase 4", "gene_name": "Tgm4", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q8BZH1", "url": "https://www.uniprot.org/uniprotkb/Q8BZH1" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.22307675", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ 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"count": 0 } ], "sort_fields": [] } ] }, { "title": "Transglutaminase 4 as a prostate autoantigen in male subfertility.", "journal": "Science translational medicine", "date": "2015", "authors": "Landegren N, Sharon D, Shum AK, Khan IS, Fasano KJ, Hallgren A, Kampf C, Freyhult E, Ardesjo-Lundgren B, Alimohammadi M, Rathsman S, Ludvigsson JF, Lundh D, Motrich R, Rivero V, Fong L, Giwercman A, Gustafsson J, Perheentupa J, Husebye ES, Anderson MS, Snyder M, Kampe O", "reference": { "type": "PubMed", "id": "26084804", "url": "https://pubmed.ncbi.nlm.nih.gov/26084804" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8BZH1-1", "protein_name": "Protein-glutamine gamma-glutamyltransferase 4", "gene_name": "Tgm4", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P49221-1", "protein_name": "Protein-glutamine gamma-glutamyltransferase 4", "gene_name": "TGM4", "tax_name": "Human" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q8BZH1", "url": "https://www.uniprot.org/uniprotkb/Q8BZH1" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.26084804", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": 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