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Jin Jing Bo, Miura Kenji, Gosney Michael J, Hasegawa Paul M, Mickelbart Michael V", "reference": { "type": "PubMed", "id": "21169508", "url": "https://pubmed.ncbi.nlm.nih.gov/21169508" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9C882-1", "protein_name": "Trihelix transcription factor GTL1", "gene_name": "GTL1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O64495-1", "protein_name": "Subtilisin-like protease SBT1.2", "gene_name": "SBT1.2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9C882", "url": "https://www.uniprot.org/uniprotkb/Q9C882" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.21169508", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": 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"journal": "Plant Cell", "date": "2007", "authors": "Vellosillo Tamara, Mart\u00ednez Marta, L\u00f3pez Miguel Angel, Vicente Jorge, Casc\u00f3n Tomas, Dolan Liam, Hamberg Mats, Castresana Carmen", "reference": { "type": "PubMed", "id": "17369372", "url": "https://pubmed.ncbi.nlm.nih.gov/17369372" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9C9U3-1", "protein_name": "Alpha-dioxygenase 2", "gene_name": "ALPHA; DOX2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FNX8-1", "protein_name": "Lipoxygenase 4, chloroplastic", "gene_name": "LOX4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LNR3-1", "protein_name": "Lipoxygenase 3, chloroplastic", "gene_name": "LOX3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q06327-1", "protein_name": "Linoleate 9S-lipoxygenase 1", "gene_name": "LOX1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q6NNL9-1", "protein_name": "Protein NONRESPONDING TO 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"count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Isolation and expression analysis of the isopropylmalate synthase gene family of Arabidopsis thaliana.", "journal": "J. Exp. Bot.", "date": "2002", "authors": "Junk Damian J, Mourad George S", "reference": { "type": "PubMed", "id": "12432038", "url": "https://pubmed.ncbi.nlm.nih.gov/12432038" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9C550-1", "protein_name": "2-isopropylmalate synthase 2, chloroplastic", "gene_name": "IMS1; IPMS2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FG67-1", "protein_name": "Methylthioalkylmalate synthase 1, chloroplastic", "gene_name": "MAM1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FN52-1", "protein_name": "Methylthioalkylmalate synthase 3, chloroplastic", "gene_name": "MAM3", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9C550", "url": "https://www.uniprot.org/uniprotkb/Q9C550" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], 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Richard", "reference": { "type": "PubMed", "id": "15155874", "url": "https://pubmed.ncbi.nlm.nih.gov/15155874" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9C550-1", "protein_name": "2-isopropylmalate synthase 2, chloroplastic", "gene_name": "IMS1; IPMS2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FN52-1", "protein_name": "Methylthioalkylmalate synthase 3, chloroplastic", "gene_name": "MAM3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LPR4-1", "protein_name": "2-isopropylmalate synthase 1, chloroplastic", "gene_name": "IPMS1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9C550", "url": "https://www.uniprot.org/uniprotkb/Q9C550" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.15155874", "abstract": "", 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"count": 0 } ], "sort_fields": [] } ] }, { "title": "A triantagonistic basic helix-loop-helix system regulates cell elongation in Arabidopsis.", "journal": "The Plant cell", "date": "2012-11", "authors": "Ikeda Miho, Fujiwara Sumire, Mitsuda Nobutaka, Ohme-Takagi Masaru", "reference": { "type": "PubMed", "id": "23161888", "url": "https://pubmed.ncbi.nlm.nih.gov/23161888" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9C670-1", "protein_name": "Transcription factor bHLH76", "gene_name": "BHLH76; CIB5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9CAA9-1", "protein_name": "Transcription factor bHLH49", "gene_name": "BHLH49", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8GY61-1", "protein_name": "Transcription factor bHLH63", "gene_name": "BHLH63", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9CA64-1", "protein_name": "Transcription factor PRE3", "gene_name": "PRE3", "tax_name": "Mouse-ear cress" }, { 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"sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Multiple bHLH proteins form heterodimers to mediate CRY2-dependent regulation of 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"glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Triphosphate Tunnel Metalloenzyme Function in Senescence Highlights a Biological Diversification of This Protein Superfamily.", "journal": "Plant physiology", "date": "2017-09", "authors": "Ung Huoi, Karia Purva, Ebine Kazuo, Ueda Takashi, Yoshioka Keiko, Moeder Wolfgang", "reference": { "type": "PubMed", "id": "28733390", "url": "https://pubmed.ncbi.nlm.nih.gov/28733390" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9C664-1", "protein_name": "Inorganic pyrophosphatase TTM2", "gene_name": "TTM2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9C9B9-1", "protein_name": "Inorganic pyrophosphatase TTM1", "gene_name": "TTM1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9C664", "url": "https://www.uniprot.org/uniprotkb/Q9C664" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.28733390", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], 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}, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Functional expression and molecular characterization of AtUBC2-1, a novel ubiquitin-conjugating enzyme (E2) from Arabidopsis thaliana.", "journal": "Plant molecular biology", "date": "1993-10", "authors": "Bartling D, Rehling P, Weiler E W", "reference": { "type": "PubMed", "id": "8219072", "url": "https://pubmed.ncbi.nlm.nih.gov/8219072" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P42743-1", "protein_name": "Ubiquitin-conjugating enzyme 15", "gene_name": "ATUBC2-1; UBC15", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P42743", "url": "https://www.uniprot.org/uniprotkb/P42743" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.8219072", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { 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"table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Characterization of a novel putative zinc finger gene MIF1: involvement in multiple hormonal regulation of Arabidopsis development.", "journal": "The Plant journal : for cell and molecular biology", "date": "2006-02", "authors": "Hu Wei, Ma Hong", "reference": { "type": "PubMed", "id": "16412086", "url": "https://pubmed.ncbi.nlm.nih.gov/16412086" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9CA51-1", "protein_name": "Mini zinc finger protein 1", "gene_name": "MIF1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SRW0-1", "protein_name": "Auxin-responsive protein SAUR28", "gene_name": "SAUR28", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q2Q493-1", "protein_name": "Mini zinc finger protein 3", "gene_name": "MIF3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q39066-1", "protein_name": "Protein ECS1", "gene_name": "ECS1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LJW5-1", "protein_name": "Mini zinc finger protein 2", "gene_name": "MIF2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9CA51", "url": "https://www.uniprot.org/uniprotkb/Q9CA51" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.16412086", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ 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"count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Ectopic expression of the Arabidopsis MINI ZINC FINGER1 and MIF3 genes induces shoot meristems on leaf margins.", "journal": "Plant molecular biology", "date": "2011-05", "authors": "Hu Wei, Feng Baomin, Ma Hong", "reference": { "type": "PubMed", "id": "21455630", "url": "https://pubmed.ncbi.nlm.nih.gov/21455630" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9CA51-1", "protein_name": "Mini zinc finger protein 1", "gene_name": "MIF1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q2Q493-1", "protein_name": "Mini zinc finger protein 3", "gene_name": "MIF3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LJW5-1", "protein_name": "Mini zinc finger protein 2", "gene_name": "MIF2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9CA51", "url": "https://www.uniprot.org/uniprotkb/Q9CA51" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.21455630", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { 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"o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "SUVR2 is involved in transcriptional gene silencing by associating with SNF2-related chromatin-remodeling proteins in Arabidopsis.", "journal": "Cell research", "date": "2014-12", "authors": "Han Yong-Feng, Dou Kun, Ma Ze-Yang, Zhang Su-Wei, Huang Huan-Wei, Li Lin, Cai Tao, Chen She, Zhu Jian-Kang, He Xin-Jian", "reference": { "type": "PubMed", "id": "25420628", "url": "https://pubmed.ncbi.nlm.nih.gov/25420628" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q94BR5-1", "protein_name": "Helicase-like transcription factor CHR28", "gene_name": "CHR28; FRG2", 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"start_pos": 32, "end_pos": 32, "sequence_org": "L", "sequence_mut": "A", "comment": "No effect on its function in transcriptional gene silencing; when associated with A52, A636 and A638.", "evidence": [ { "database": "UniProtKB", "id": "Q9FNC7", "url": "https://www.uniprot.org/uniprotkb/Q9FNC7" }, { "database": "PubMed", "id": "25420628", "url": "https://pubmed.ncbi.nlm.nih.gov/25420628" } ], "uniprot_canonical_ac": "Q9FNC7-1" }, { "start_pos": 52, "end_pos": 52, "sequence_org": "D", "sequence_mut": "A", "comment": "No effect on its function in transcriptional gene silencing; when associated with A32, A636 and A638.", "evidence": [ { "database": "UniProtKB", "id": "Q9FNC7", "url": "https://www.uniprot.org/uniprotkb/Q9FNC7" }, { "database": "PubMed", "id": "25420628", "url": "https://pubmed.ncbi.nlm.nih.gov/25420628" } ], "uniprot_canonical_ac": "Q9FNC7-1" }, { "start_pos": 636, "end_pos": 636, "sequence_org": "H", "sequence_mut": "A", "comment": "No effect on its function in transcriptional gene silencing; when associated with A32, A52 and A638.", "evidence": [ { "database": "UniProtKB", "id": "Q9FNC7", "url": "https://www.uniprot.org/uniprotkb/Q9FNC7" }, { "database": "PubMed", "id": "25420628", "url": "https://pubmed.ncbi.nlm.nih.gov/25420628" } ], "uniprot_canonical_ac": "Q9FNC7-1" }, { "start_pos": 638, "end_pos": 638, "sequence_org": "C", "sequence_mut": "A", "comment": "No effect on its function in transcriptional gene silencing; when associated with A32, A52 and A636.", "evidence": [ { "database": "UniProtKB", "id": "Q9FNC7", "url": "https://www.uniprot.org/uniprotkb/Q9FNC7" }, { "database": "PubMed", "id": "25420628", "url": "https://pubmed.ncbi.nlm.nih.gov/25420628" } ], "uniprot_canonical_ac": "Q9FNC7-1" } ], "record_id": "pubmed.25420628", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 5 } ], 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yeast demonstrates that Arabidopsis ECERIFERUM1 and ECERIFERUM3 are core components of a very-long-chain alkane synthesis complex.", "journal": "Plant Cell", "date": "2012", "authors": "Bernard Am\u00e9lie, Domergue Fr\u00e9d\u00e9ric, Pascal St\u00e9phanie, Jetter Reinhard, Renne Charlotte, Faure Jean-Denis, Haslam Richard P, Napier Johnathan A, Lessire Ren\u00e9, Joub\u00e8s J\u00e9r\u00f4me", "reference": { "type": "PubMed", "id": "22773744", "url": "https://pubmed.ncbi.nlm.nih.gov/22773744" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O48845-1", "protein_name": "Cytochrome b5 isoform B", "gene_name": "CB5-B; CYTB5-B", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9ZNV4-1", "protein_name": "Cytochrome B5 isoform C", "gene_name": "CYTB5-C", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9ZWT2-1", "protein_name": "Cytochrome B5 isoform D", "gene_name": "CYTB5-D", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": 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Bot.", "date": "2005", "authors": "Bensmihen Sandra, Giraudat J\u00e9r\u00f4me, Parcy Fran\u00e7ois", "reference": { "type": "PubMed", "id": "15642716", "url": "https://pubmed.ncbi.nlm.nih.gov/15642716" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9C5Q2-1", "protein_name": "ABSCISIC ACID-INSENSITIVE 5-like protein 3", "gene_name": "DPBF4; EEL", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8RYD6-1", "protein_name": "ABSCISIC ACID-INSENSITIVE 5-like protein 1", "gene_name": "DPBF2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LES3-1", "protein_name": "ABSCISIC ACID-INSENSITIVE 5-like protein 2", "gene_name": "DPBF3", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9C5Q2", "url": "https://www.uniprot.org/uniprotkb/Q9C5Q2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis 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Madeleine C, Whittington Angela T, Gale Kevin R, Collings David A, Wasteneys Geoffrey O", "reference": { "type": "PubMed", "id": "16377747", "url": "https://pubmed.ncbi.nlm.nih.gov/16377747" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q94FN2-1", "protein_name": "Protein MOR1", "gene_name": "MOR1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q94FN2", "url": "https://www.uniprot.org/uniprotkb/Q94FN2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.16377747", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { 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"count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": 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"journal": "Plant Signal. Behav.", "date": "2007", "authors": "Xu Xianfeng Morgan, Rose Annkatrin, Meier Iris", "reference": { "type": "PubMed", "id": "19704557", "url": "https://pubmed.ncbi.nlm.nih.gov/19704557" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q94F30-1", "protein_name": "Ubiquitin-like-specific protease ESD4", "gene_name": "ESD4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "A4GSN8-1", "protein_name": "Nuclear-pore anchor", "gene_name": "NUA", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q94F30", "url": "https://www.uniprot.org/uniprotkb/Q94F30" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.19704557", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": 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LAM domain containing RNA-binding protein LARP1c induces precocious leaf senescence in Arabidopsis.", "journal": "Molecules and cells", "date": "2012-10", "authors": "Zhang Bangyue, Jia Jianheng, Yang Min, Yan Chunxia, Han Yuzhen", "reference": { "type": "PubMed", "id": "22965746", "url": "https://pubmed.ncbi.nlm.nih.gov/22965746" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q94K80-1", "protein_name": "La-related protein 1C", "gene_name": "LARP1C", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8RWR2-1", "protein_name": "La-related protein 1B", "gene_name": "LARP1B", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q94K80", "url": "https://www.uniprot.org/uniprotkb/Q94K80" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.22965746", "abstract": "", 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"The essential nature of sphingolipids in plants as revealed by the functional identification and characterization of the Arabidopsis LCB1 subunit of serine palmitoyltransferase.", "journal": "The Plant cell", "date": "2006-12", "authors": "Chen Ming, Han Gongshe, Dietrich Charles R, Dunn Teresa M, Cahoon Edgar B", "reference": { "type": "PubMed", "id": "17194770", "url": "https://pubmed.ncbi.nlm.nih.gov/17194770" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q94IB8-1", "protein_name": "Long chain base biosynthesis protein 1", "gene_name": "LCB1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LSZ9-1", "protein_name": "Long chain base biosynthesis protein 2a", "gene_name": "LCB2a", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q94IB8", "url": "https://www.uniprot.org/uniprotkb/Q94IB8" } ], "common_name": "Mouse-ear cress", "glygen_name": 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Involvement of sphingoid bases in mediating reactive oxygen intermediate production and programmed cell death in Arabidopsis.", "journal": "Cell research", "date": "2007-12", "authors": "Shi Lihua, Bielawski Jacek, Mu Jinye, Dong Haili, Teng Chong, Zhang Jian, Yang Xiaohui, Tomishige Nario, Hanada Kentaro, Hannun Yusuf A, Zuo Jianru", "reference": { "type": "PubMed", "id": "18059378", "url": "https://pubmed.ncbi.nlm.nih.gov/18059378" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q94IB8-1", "protein_name": "Long chain base biosynthesis protein 1", "gene_name": "LCB1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q94IB8", "url": "https://www.uniprot.org/uniprotkb/Q94IB8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.18059378", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", 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