[ { "title": "Mutations in the 3beta-hydroxysterol Delta24-reductase gene cause desmosterolosis, an autosomal recessive disorder of cholesterol biosynthesis.", "journal": "American journal of human genetics", "date": "2001", "authors": "Waterham HR, Koster J, Romeijn GJ, Hennekam RC, Vreken P, Andersson HC, FitzPatrick DR, Kelley RI, Wanders RJ", "reference": { "type": "PubMed", "id": "11519011", "url": "https://pubmed.ncbi.nlm.nih.gov/11519011" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O75845-1", "protein_name": "Lathosterol oxidase", "gene_name": "SC5D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15738-1", "protein_name": "Sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating", "gene_name": "NSDHL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBM7-1", "protein_name": "7-dehydrocholesterol reductase", "gene_name": "DHCR7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P56937-1", "protein_name": "3-keto-steroid 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"gene_name": "Dhcr24", "tax_name": "Mouse" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "O75845", "url": "https://www.uniprot.org/uniprotkb/O75845" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.11519011", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 11 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Lathosterolosis, a novel multiple-malformation/mental retardation syndrome due to deficiency of 3beta-hydroxysteroid-delta5-desaturase.", "journal": "American journal of human genetics", "date": "2002", "authors": "Brunetti-Pierri N, Corso G, Rossi M, Ferrari P, Balli F, Rivasi F, Annunziata I, Ballabio A, Russo AD, Andria G, Parenti G", "reference": { "type": "PubMed", "id": "12189593", "url": "https://pubmed.ncbi.nlm.nih.gov/12189593" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O75845-1", "protein_name": "Lathosterol oxidase", "gene_name": "SC5D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15738-1", "protein_name": "Sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating", "gene_name": "NSDHL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBM7-1", "protein_name": "7-dehydrocholesterol reductase", "gene_name": "DHCR7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P56937-1", "protein_name": "3-keto-steroid reductase/17-beta-hydroxysteroid dehydrogenase 7", "gene_name": "HSD17B7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15800-1", "protein_name": "Methylsterol monooxygenase 1", "gene_name": "MSMO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15392-1", "protein_name": "Delta(24)-sterol reductase", "gene_name": "DHCR24", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15125-1", "protein_name": "3-beta-hydroxysteroid-Delta(8),Delta(7)-isomerase", "gene_name": "EBP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16850-1", "protein_name": "Lanosterol 14-alpha demethylase", "gene_name": "CYP51A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14739-1", "protein_name": "Delta(14)-sterol reductase LBR", "gene_name": "LBR", "tax_name": "Human" }, { "uniprot_canonical_ac": "O76062-1", "protein_name": "Delta(14)-sterol reductase TM7SF2", "gene_name": "TM7SF2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "O75845", "url": "https://www.uniprot.org/uniprotkb/O75845" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.12189593", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 10 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Autosomal recessive HEM/Greenberg skeletal dysplasia is caused by 3 beta-hydroxysterol delta 14-reductase deficiency due to mutations in the lamin B receptor gene.", "journal": "American journal of human genetics", "date": "2003", "authors": "Waterham HR, Koster J, Mooyer P, Noort Gv Gv, Kelley RI, Wilcox WR, Wanders RJ, Hennekam RC, Oosterwijk JC", "reference": { "type": "PubMed", "id": "12618959", "url": "https://pubmed.ncbi.nlm.nih.gov/12618959" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O75845-1", "protein_name": "Lathosterol oxidase", "gene_name": "SC5D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15738-1", "protein_name": "Sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating", "gene_name": "NSDHL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBM7-1", "protein_name": "7-dehydrocholesterol reductase", "gene_name": "DHCR7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P56937-1", "protein_name": "3-keto-steroid reductase/17-beta-hydroxysteroid dehydrogenase 7", "gene_name": "HSD17B7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15800-1", "protein_name": "Methylsterol monooxygenase 1", "gene_name": "MSMO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15392-1", "protein_name": "Delta(24)-sterol reductase", "gene_name": "DHCR24", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15125-1", "protein_name": "3-beta-hydroxysteroid-Delta(8),Delta(7)-isomerase", "gene_name": "EBP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16850-1", "protein_name": "Lanosterol 14-alpha demethylase", "gene_name": "CYP51A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14739-1", "protein_name": "Delta(14)-sterol reductase LBR", "gene_name": "LBR", "tax_name": "Human" }, { "uniprot_canonical_ac": "O76062-1", "protein_name": "Delta(14)-sterol reductase TM7SF2", "gene_name": "TM7SF2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "O75845", "url": "https://www.uniprot.org/uniprotkb/O75845" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.12618959", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 10 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, 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"o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Lathosterolosis: an inborn error of human and murine cholesterol synthesis due to lathosterol 5-desaturase deficiency.", "journal": "Human molecular genetics", "date": "2003", "authors": "Krakowiak PA, Wassif CA, Kratz L, Cozma D, Kovarova M, Harris G, Grinberg A, Yang Y, Hunter AG, Tsokos M, Kelley RI, Porter FD", "reference": { "type": "PubMed", "id": "12812989", "url": "https://pubmed.ncbi.nlm.nih.gov/12812989" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O75845-1", "protein_name": "Lathosterol oxidase", "gene_name": "SC5D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15738-1", "protein_name": "Sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating", "gene_name": "NSDHL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBM7-1", "protein_name": "7-dehydrocholesterol reductase", "gene_name": "DHCR7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P56937-1", "protein_name": 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identification of human 3-ketosteroid reductase, the last unknown enzyme of mammalian cholesterol biosynthesis.", "journal": "Molecular endocrinology (Baltimore, Md.)", "date": "2003", "authors": "Marijanovic Z, Laubner D, Moller G, Gege C, Husen B, Adamski J, Breitling R", "reference": { "type": "PubMed", "id": "12829805", "url": "https://pubmed.ncbi.nlm.nih.gov/12829805" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O75845-1", "protein_name": "Lathosterol oxidase", "gene_name": "SC5D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15738-1", "protein_name": "Sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating", "gene_name": "NSDHL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBM7-1", "protein_name": "7-dehydrocholesterol reductase", "gene_name": "DHCR7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P56937-1", "protein_name": "3-keto-steroid reductase/17-beta-hydroxysteroid dehydrogenase 7", "gene_name": "HSD17B7", 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A metabolic pathway from lanosterol to cholesterol.", "journal": "The Journal of biological chemistry", "date": "1960", "authors": "KANDUTSCH AA, RUSSELL AE", "reference": { "type": "PubMed", "id": "14404284", "url": "https://pubmed.ncbi.nlm.nih.gov/14404284" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O75845-1", "protein_name": "Lathosterol oxidase", "gene_name": "SC5D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15738-1", "protein_name": "Sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating", "gene_name": "NSDHL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBM7-1", "protein_name": "7-dehydrocholesterol reductase", "gene_name": "DHCR7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P56937-1", "protein_name": "3-keto-steroid reductase/17-beta-hydroxysteroid dehydrogenase 7", "gene_name": "HSD17B7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15800-1", "protein_name": "Methylsterol monooxygenase 1", "gene_name": 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biosynthesis, traffics through the Golgi and accumulates on ER membranes and on the surface of lipid droplets.", "journal": "Human molecular genetics", "date": "2003", "authors": "Caldas H, Herman GE", "reference": { "type": "PubMed", "id": "14506130", "url": "https://pubmed.ncbi.nlm.nih.gov/14506130" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O75845-1", "protein_name": "Lathosterol oxidase", "gene_name": "SC5D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15738-1", "protein_name": "Sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating", "gene_name": "NSDHL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBM7-1", "protein_name": "7-dehydrocholesterol reductase", "gene_name": "DHCR7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P56937-1", "protein_name": "3-keto-steroid reductase/17-beta-hydroxysteroid dehydrogenase 7", "gene_name": "HSD17B7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15800-1", "protein_name": 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"evidence": [ { "database": "UniProtKB", "id": "O94885", "url": "https://www.uniprot.org/uniprotkb/O94885" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.17088907", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 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"Naturally presented peptides on major histocompatibility complex I and II molecules eluted from central nervous system of multiple sclerosis patients.", "journal": "Molecular & cellular proteomics : MCP", "date": "2009-09", "authors": "Fissolo Nicolas, Haag Sabrina, de Graaf Katrien L, Drews Oliver, Stevanovic Stefan, Rammensee Hans Georg, Weissert Robert", "reference": { "type": "PubMed", "id": "19531498", "url": "https://pubmed.ncbi.nlm.nih.gov/19531498" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O94885-1", "protein_name": "SAM and SH3 domain-containing protein 1", "gene_name": "SASH1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92563-1", "protein_name": "Testican-2", "gene_name": "SPOCK2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q09666-1", "protein_name": "Neuroblast differentiation-associated protein AHNAK", "gene_name": "AHNAK", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86V81-1", "protein_name": "THO complex subunit 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"count": 0 } ], "sort_fields": [] } ] }, { "title": "SEMA3A, a gene involved in axonal pathfinding, is mutated in patients with Kallmann syndrome.", "journal": "PLoS genetics", "date": "2012", "authors": "Hanchate NK, Giacobini P, Lhuillier P, Parkash J, Espy C, Fouveaut C, Leroy C, Baron S, Campagne C, Vanacker C, Collier F, Cruaud C, Meyer V, Garcia-Pinero A, Dewailly D, Cortet-Rudelli C, Gersak K, Metz C, Chabrier G, Pugeat M, Young J, Hardelin JP, Prevot V, Dode C", "reference": { "type": "PubMed", "id": "22927827", "url": "https://pubmed.ncbi.nlm.nih.gov/22927827" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q14563-1", "protein_name": "Semaphorin-3A", "gene_name": "SEMA3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23352-1", "protein_name": "Anosmin-1", "gene_name": "ANOS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P11362-1", "protein_name": "Fibroblast growth factor receptor 1", "gene_name": "FGFR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFJ6-1", "protein_name": "Prokineticin receptor 2", "gene_name": "PROKR2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q14563", "url": "https://www.uniprot.org/uniprotkb/Q14563" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.22927827", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { 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"Human" }, { "uniprot_canonical_ac": "Q9P2D1-1", "protein_name": "ATP-dependent chromatin remodeler CHD7", "gene_name": "CHD7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30968-1", "protein_name": "Gonadotropin-releasing hormone receptor", "gene_name": "GNRHR", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q14563", "url": "https://www.uniprot.org/uniprotkb/Q14563" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.25077900", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 11 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] 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{ "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": 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Neurol.", "date": "2017", "authors": "Lindholm Tomas, Risling M\u00e5rten, Carlstedt Thomas, Hammarberg Henrik, Wallquist Wilhelm, Cullheim Staffan, Sk\u00f6ld Mattias K", "reference": { "type": "PubMed", "id": "28270793", "url": "https://pubmed.ncbi.nlm.nih.gov/28270793" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q14563-1", "protein_name": "Semaphorin-3A", "gene_name": "SEMA3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q05546-1", "protein_name": "Tenascin-R", "gene_name": "Tnr", "tax_name": "Rat" }, { "uniprot_canonical_ac": "Q9QWJ9-1", "protein_name": "Neuropilin-1", "gene_name": "Nrp1", "tax_name": "Rat" }, { "uniprot_canonical_ac": "O35276-1", "protein_name": "Neuropilin-2", "gene_name": "Nrp2", "tax_name": "Rat" }, { "uniprot_canonical_ac": "Q63548-1", "protein_name": "Semaphorin-3A", "gene_name": "Sema3a", "tax_name": "Rat" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": 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"uniprot_canonical_ac": "Q8IXN7-1", "protein_name": "N-acetylaspartylglutamate synthase A", "gene_name": "RIMKLA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93088-1", "protein_name": "Betaine--homocysteine S-methyltransferase 1", "gene_name": "BHMT", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6PFX8-1", "protein_name": "N-acetylaspartylglutamate synthase A", "gene_name": "Rimkla", "tax_name": "Mouse" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q8IXN7", "url": "https://www.uniprot.org/uniprotkb/Q8IXN7" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.39117631", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", 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], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Expression and characterization of a human mitochondrial phenylalanyl-tRNA synthetase.", "journal": "Journal of molecular biology", "date": "1999", "authors": "Bullard JM, Cai YC, Demeler B, Spremulli LL", "reference": { "type": "PubMed", "id": "10329163", "url": "https://pubmed.ncbi.nlm.nih.gov/10329163" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q5JPH6-1", "protein_name": "Nondiscriminating glutamyl-tRNA synthetase EARS2, mitochondrial", "gene_name": "EARS2", 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"tax_name": "Human" }, { "uniprot_canonical_ac": "P41250-1", "protein_name": "Glycine--tRNA ligase", "gene_name": "GARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2Z4-1", "protein_name": "Tyrosine--tRNA ligase, mitochondrial", "gene_name": "YARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5JTZ9-1", "protein_name": "Alanine--tRNA ligase, mitochondrial", "gene_name": "AARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6PI48-1", "protein_name": "Aspartate--tRNA ligase, mitochondrial", "gene_name": "DARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5T160-1", "protein_name": "Probable arginine--tRNA ligase, mitochondrial", "gene_name": "RARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49590-1", "protein_name": "Histidine--tRNA ligase, mitochondrial", "gene_name": "HARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2U2-1", "protein_name": "Inorganic pyrophosphatase 2, mitochondrial", "gene_name": "PPA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5ST30-1", "protein_name": "Valine--tRNA ligase, mitochondrial", "gene_name": "VARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96GW9-1", "protein_name": "Methionine--tRNA ligase, mitochondrial", "gene_name": "MARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47897-1", "protein_name": "Glutamine--tRNA ligase", "gene_name": "QARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15046-1", "protein_name": "Lysine--tRNA ligase", "gene_name": "KARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96I59-1", "protein_name": "Asparaginyl-tRNA synthetase", "gene_name": "NARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NSE4-1", "protein_name": "Isoleucine--tRNA ligase, mitochondrial", "gene_name": "IARS2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q5JPH6", "url": "https://www.uniprot.org/uniprotkb/Q5JPH6" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.10329163", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 21 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Expression and characterization of the human mitochondrial leucyl-tRNA synthetase.", "journal": "Biochimica et biophysica acta", "date": "2000", "authors": "Bullard JM, Cai YC, Spremulli LL", "reference": { "type": "PubMed", "id": "10684970", "url": "https://pubmed.ncbi.nlm.nih.gov/10684970" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q5JPH6-1", "protein_name": "Nondiscriminating glutamyl-tRNA synthetase EARS2, mitochondrial", "gene_name": "EARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NP81-1", "protein_name": "Serine--tRNA ligase, mitochondrial", "gene_name": "SARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15031-1", "protein_name": "Leucine--tRNA ligase, mitochondrial", "gene_name": "LARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HA77-1", "protein_name": "Probable cysteine--tRNA ligase, mitochondrial", "gene_name": "CARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BW92-1", "protein_name": "Threonine--tRNA ligase, mitochondrial", "gene_name": "TARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7L3T8-1", "protein_name": "Probable proline--tRNA ligase, mitochondrial", "gene_name": "PARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UGM6-1", "protein_name": "Tryptophan--tRNA ligase, mitochondrial", "gene_name": "WARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95363-1", "protein_name": "Phenylalanine--tRNA ligase, mitochondrial", "gene_name": "FARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41250-1", "protein_name": "Glycine--tRNA ligase", "gene_name": "GARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2Z4-1", "protein_name": "Tyrosine--tRNA ligase, mitochondrial", "gene_name": "YARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5JTZ9-1", "protein_name": "Alanine--tRNA ligase, mitochondrial", "gene_name": "AARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6PI48-1", "protein_name": "Aspartate--tRNA ligase, mitochondrial", "gene_name": "DARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5T160-1", "protein_name": "Probable arginine--tRNA ligase, mitochondrial", "gene_name": "RARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49590-1", "protein_name": "Histidine--tRNA ligase, mitochondrial", "gene_name": "HARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2U2-1", "protein_name": "Inorganic pyrophosphatase 2, mitochondrial", "gene_name": "PPA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5ST30-1", "protein_name": "Valine--tRNA ligase, mitochondrial", "gene_name": "VARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96GW9-1", "protein_name": "Methionine--tRNA ligase, mitochondrial", "gene_name": "MARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47897-1", "protein_name": "Glutamine--tRNA ligase", "gene_name": "QARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15046-1", "protein_name": "Lysine--tRNA ligase", "gene_name": "KARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96I59-1", "protein_name": "Asparaginyl-tRNA synthetase", "gene_name": "NARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NSE4-1", "protein_name": "Isoleucine--tRNA ligase, mitochondrial", "gene_name": "IARS2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q5JPH6", "url": "https://www.uniprot.org/uniprotkb/Q5JPH6" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.10684970", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 21 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Characterization and tRNA recognition of mammalian mitochondrial seryl-tRNA synthetase.", "journal": "The Journal of biological chemistry", "date": "2000", "authors": "Yokogawa T, Shimada N, Takeuchi N, Benkowski L, Suzuki T, Omori A, Ueda T, Nishikawa K, Spremulli LL, Watanabe K", "reference": { "type": "PubMed", "id": "10764807", "url": "https://pubmed.ncbi.nlm.nih.gov/10764807" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q5JPH6-1", "protein_name": "Nondiscriminating glutamyl-tRNA synthetase EARS2, mitochondrial", "gene_name": "EARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NP81-1", "protein_name": "Serine--tRNA ligase, mitochondrial", "gene_name": "SARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15031-1", "protein_name": "Leucine--tRNA ligase, mitochondrial", "gene_name": "LARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HA77-1", "protein_name": "Probable cysteine--tRNA ligase, mitochondrial", "gene_name": "CARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BW92-1", "protein_name": "Threonine--tRNA ligase, mitochondrial", "gene_name": "TARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7L3T8-1", "protein_name": "Probable proline--tRNA ligase, mitochondrial", "gene_name": "PARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UGM6-1", "protein_name": "Tryptophan--tRNA ligase, mitochondrial", "gene_name": "WARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95363-1", "protein_name": "Phenylalanine--tRNA ligase, mitochondrial", "gene_name": "FARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9N0F3-1", "protein_name": "Serine--tRNA ligase, mitochondrial", "gene_name": "SARS2", "tax_name": "Bovine" }, { "uniprot_canonical_ac": "P41250-1", "protein_name": "Glycine--tRNA ligase", "gene_name": "GARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2Z4-1", "protein_name": "Tyrosine--tRNA ligase, mitochondrial", "gene_name": "YARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5JTZ9-1", "protein_name": "Alanine--tRNA ligase, mitochondrial", "gene_name": "AARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6PI48-1", "protein_name": "Aspartate--tRNA ligase, mitochondrial", "gene_name": "DARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5T160-1", "protein_name": "Probable arginine--tRNA ligase, mitochondrial", "gene_name": "RARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49590-1", "protein_name": "Histidine--tRNA ligase, mitochondrial", "gene_name": "HARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2U2-1", "protein_name": "Inorganic pyrophosphatase 2, mitochondrial", "gene_name": "PPA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5ST30-1", "protein_name": "Valine--tRNA ligase, mitochondrial", "gene_name": "VARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96GW9-1", "protein_name": "Methionine--tRNA ligase, mitochondrial", "gene_name": "MARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47897-1", "protein_name": "Glutamine--tRNA ligase", "gene_name": "QARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15046-1", "protein_name": "Lysine--tRNA ligase", "gene_name": "KARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96I59-1", "protein_name": "Asparaginyl-tRNA synthetase", "gene_name": "NARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NSE4-1", "protein_name": "Isoleucine--tRNA ligase, mitochondrial", "gene_name": "IARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9JJL8-1", "protein_name": "Serine--tRNA ligase, mitochondrial", "gene_name": "Sars2", "tax_name": "Mouse" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q5JPH6", "url": "https://www.uniprot.org/uniprotkb/Q5JPH6" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.10764807", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 23 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Identification and characterization of human mitochondrial tryptophanyl-tRNA synthetase.", "journal": "The Journal of biological chemistry", "date": "2000", "authors": "Jorgensen R, Sogaard TM, Rossing AB, Martensen PM, Justesen J", "reference": { "type": "PubMed", "id": "10828066", "url": "https://pubmed.ncbi.nlm.nih.gov/10828066" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q5JPH6-1", "protein_name": "Nondiscriminating glutamyl-tRNA synthetase EARS2, mitochondrial", "gene_name": "EARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NP81-1", "protein_name": "Serine--tRNA ligase, mitochondrial", "gene_name": "SARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15031-1", "protein_name": "Leucine--tRNA ligase, mitochondrial", "gene_name": "LARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HA77-1", "protein_name": "Probable cysteine--tRNA ligase, mitochondrial", "gene_name": "CARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BW92-1", "protein_name": "Threonine--tRNA ligase, mitochondrial", "gene_name": "TARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7L3T8-1", "protein_name": "Probable proline--tRNA ligase, mitochondrial", "gene_name": "PARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UGM6-1", "protein_name": "Tryptophan--tRNA ligase, mitochondrial", "gene_name": "WARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95363-1", "protein_name": "Phenylalanine--tRNA ligase, mitochondrial", "gene_name": "FARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41250-1", "protein_name": "Glycine--tRNA ligase", "gene_name": "GARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2Z4-1", "protein_name": "Tyrosine--tRNA ligase, mitochondrial", "gene_name": "YARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5JTZ9-1", "protein_name": "Alanine--tRNA ligase, mitochondrial", "gene_name": "AARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6PI48-1", "protein_name": "Aspartate--tRNA ligase, mitochondrial", "gene_name": "DARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5T160-1", "protein_name": "Probable arginine--tRNA ligase, mitochondrial", "gene_name": "RARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49590-1", "protein_name": "Histidine--tRNA ligase, mitochondrial", "gene_name": "HARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2U2-1", "protein_name": "Inorganic pyrophosphatase 2, mitochondrial", "gene_name": "PPA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5ST30-1", "protein_name": "Valine--tRNA ligase, mitochondrial", "gene_name": "VARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96GW9-1", "protein_name": "Methionine--tRNA ligase, mitochondrial", "gene_name": "MARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47897-1", "protein_name": "Glutamine--tRNA ligase", "gene_name": "QARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15046-1", "protein_name": "Lysine--tRNA ligase", "gene_name": "KARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96I59-1", "protein_name": "Asparaginyl-tRNA synthetase", "gene_name": "NARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NSE4-1", "protein_name": "Isoleucine--tRNA ligase, mitochondrial", "gene_name": "IARS2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q5JPH6", "url": "https://www.uniprot.org/uniprotkb/Q5JPH6" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.10828066", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 21 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Glycyl tRNA synthetase mutations in Charcot-Marie-Tooth disease type 2D and distal spinal muscular atrophy type V.", "journal": "American journal of human genetics", "date": "2003", "authors": "Antonellis A, Ellsworth RE, Sambuughin N, Puls I, Abel A, Lee-Lin SQ, Jordanova A, Kremensky I, Christodoulou K, Middleton LT, Sivakumar K, Ionasescu V, Funalot B, Vance JM, Goldfarb LG, Fischbeck KH, Green ED", "reference": { "type": "PubMed", "id": "12690580", "url": "https://pubmed.ncbi.nlm.nih.gov/12690580" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q5JPH6-1", "protein_name": "Nondiscriminating glutamyl-tRNA synthetase EARS2, mitochondrial", "gene_name": "EARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NP81-1", "protein_name": "Serine--tRNA ligase, mitochondrial", "gene_name": "SARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15031-1", "protein_name": "Leucine--tRNA ligase, mitochondrial", "gene_name": "LARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HA77-1", "protein_name": "Probable cysteine--tRNA ligase, mitochondrial", "gene_name": "CARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P56192-1", "protein_name": "Methionine--tRNA ligase, cytoplasmic", "gene_name": "MARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12081-1", "protein_name": "Histidine--tRNA ligase, cytoplasmic", "gene_name": "HARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BW92-1", "protein_name": "Threonine--tRNA ligase, mitochondrial", "gene_name": "TARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P54136-1", "protein_name": "Arginine--tRNA ligase, cytoplasmic", "gene_name": "RARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7L3T8-1", "protein_name": "Probable proline--tRNA ligase, mitochondrial", "gene_name": "PARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UGM6-1", "protein_name": "Tryptophan--tRNA ligase, mitochondrial", "gene_name": "WARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49591-1", "protein_name": "Serine--tRNA ligase, cytoplasmic", "gene_name": "SARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95363-1", "protein_name": "Phenylalanine--tRNA ligase, mitochondrial", "gene_name": "FARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41250-1", "protein_name": "Glycine--tRNA ligase", "gene_name": "GARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2Z4-1", "protein_name": "Tyrosine--tRNA ligase, mitochondrial", "gene_name": "YARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P54577-1", "protein_name": "Tyrosine--tRNA ligase, cytoplasmic", "gene_name": "YARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P2J5-1", "protein_name": "Leucine--tRNA ligase, cytoplasmic", "gene_name": "LARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41252-1", "protein_name": "Isoleucine--tRNA ligase, cytoplasmic", "gene_name": "IARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49588-1", "protein_name": "Alanine--tRNA ligase, cytoplasmic", "gene_name": "AARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5JTZ9-1", "protein_name": "Alanine--tRNA ligase, mitochondrial", "gene_name": "AARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6PI48-1", "protein_name": "Aspartate--tRNA ligase, mitochondrial", "gene_name": "DARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5T160-1", "protein_name": "Probable arginine--tRNA ligase, mitochondrial", "gene_name": "RARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49590-1", "protein_name": "Histidine--tRNA ligase, mitochondrial", "gene_name": "HARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2U2-1", "protein_name": "Inorganic pyrophosphatase 2, mitochondrial", "gene_name": "PPA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15181-1", "protein_name": "Inorganic pyrophosphatase", "gene_name": "PPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5ST30-1", "protein_name": "Valine--tRNA ligase, mitochondrial", "gene_name": "VARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96GW9-1", "protein_name": "Methionine--tRNA ligase, mitochondrial", "gene_name": "MARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12904-1", "protein_name": "Aminoacyl tRNA synthase complex-interacting multifunctional protein 1", "gene_name": "AIMP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13155-1", "protein_name": "Aminoacyl tRNA synthase complex-interacting multifunctional protein 2", "gene_name": "AIMP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y285-1", "protein_name": "Phenylalanine--tRNA ligase alpha subunit", "gene_name": "FARSA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47897-1", "protein_name": "Glutamine--tRNA ligase", "gene_name": "QARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14868-1", "protein_name": "Aspartate--tRNA ligase, cytoplasmic", "gene_name": "DARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15046-1", "protein_name": "Lysine--tRNA ligase", "gene_name": "KARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23381-1", "protein_name": "Tryptophan--tRNA ligase, cytoplasmic", "gene_name": "WARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43324-1", "protein_name": "Eukaryotic translation elongation factor 1 epsilon-1", "gene_name": "EEF1E1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26640-1", "protein_name": "Valine--tRNA ligase", "gene_name": "VARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07814-1", "protein_name": "Bifunctional glutamate/proline--tRNA ligase", "gene_name": "EPRS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43776-1", "protein_name": "Asparagine--tRNA ligase, cytoplasmic", "gene_name": "NARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49589-1", "protein_name": "Cysteine--tRNA ligase, cytoplasmic", "gene_name": "CARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96I59-1", "protein_name": "Asparaginyl-tRNA synthetase", "gene_name": "NARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NSD9-1", "protein_name": "Phenylalanine--tRNA ligase beta subunit", "gene_name": "FARSB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NSE4-1", "protein_name": "Isoleucine--tRNA ligase, mitochondrial", "gene_name": "IARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26639-1", "protein_name": "Threonine--tRNA ligase 1, cytoplasmic", "gene_name": "TARS1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q5JPH6", "url": "https://www.uniprot.org/uniprotkb/Q5JPH6" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.12690580", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 42 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Characterization of the human mitochondrial methionyl-tRNA synthetase.", "journal": "Biochemistry", "date": "2004", "authors": "Spencer AC, Heck A, Takeuchi N, Watanabe K, Spremulli LL", "reference": { "type": "PubMed", "id": "15274629", "url": "https://pubmed.ncbi.nlm.nih.gov/15274629" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q5JPH6-1", "protein_name": "Nondiscriminating glutamyl-tRNA synthetase EARS2, mitochondrial", "gene_name": "EARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NP81-1", "protein_name": "Serine--tRNA ligase, mitochondrial", "gene_name": "SARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15031-1", "protein_name": "Leucine--tRNA ligase, mitochondrial", "gene_name": "LARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HA77-1", "protein_name": "Probable cysteine--tRNA ligase, mitochondrial", "gene_name": "CARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BW92-1", "protein_name": "Threonine--tRNA ligase, mitochondrial", "gene_name": "TARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7L3T8-1", "protein_name": "Probable proline--tRNA ligase, mitochondrial", "gene_name": "PARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UGM6-1", "protein_name": "Tryptophan--tRNA ligase, mitochondrial", "gene_name": "WARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95363-1", "protein_name": "Phenylalanine--tRNA ligase, mitochondrial", "gene_name": "FARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41250-1", "protein_name": "Glycine--tRNA ligase", "gene_name": "GARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2Z4-1", "protein_name": "Tyrosine--tRNA ligase, mitochondrial", "gene_name": "YARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5JTZ9-1", "protein_name": "Alanine--tRNA ligase, mitochondrial", "gene_name": "AARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6PI48-1", "protein_name": "Aspartate--tRNA ligase, mitochondrial", "gene_name": "DARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5T160-1", "protein_name": "Probable arginine--tRNA ligase, mitochondrial", "gene_name": "RARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49590-1", "protein_name": "Histidine--tRNA ligase, mitochondrial", "gene_name": "HARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2U2-1", "protein_name": "Inorganic pyrophosphatase 2, mitochondrial", "gene_name": "PPA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5ST30-1", "protein_name": "Valine--tRNA ligase, mitochondrial", "gene_name": "VARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96GW9-1", "protein_name": "Methionine--tRNA ligase, mitochondrial", "gene_name": "MARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47897-1", "protein_name": "Glutamine--tRNA ligase", "gene_name": "QARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15046-1", "protein_name": "Lysine--tRNA ligase", "gene_name": "KARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96I59-1", "protein_name": "Asparaginyl-tRNA synthetase", "gene_name": "NARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NSE4-1", "protein_name": "Isoleucine--tRNA ligase, mitochondrial", "gene_name": "IARS2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q5JPH6", "url": "https://www.uniprot.org/uniprotkb/Q5JPH6" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.15274629", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 21 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { 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ligase, mitochondrial", "gene_name": "LARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HA77-1", "protein_name": "Probable cysteine--tRNA ligase, mitochondrial", "gene_name": "CARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BW92-1", "protein_name": "Threonine--tRNA ligase, mitochondrial", "gene_name": "TARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7L3T8-1", "protein_name": "Probable proline--tRNA ligase, mitochondrial", "gene_name": "PARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UGM6-1", "protein_name": "Tryptophan--tRNA ligase, mitochondrial", "gene_name": "WARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95363-1", "protein_name": "Phenylalanine--tRNA ligase, mitochondrial", "gene_name": "FARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41250-1", "protein_name": "Glycine--tRNA ligase", "gene_name": "GARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2Z4-1", "protein_name": "Tyrosine--tRNA ligase, 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mitochondrial", "gene_name": "MARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47897-1", "protein_name": "Glutamine--tRNA ligase", "gene_name": "QARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15046-1", "protein_name": "Lysine--tRNA ligase", "gene_name": "KARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96I59-1", "protein_name": "Asparaginyl-tRNA synthetase", "gene_name": "NARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NSE4-1", "protein_name": "Isoleucine--tRNA ligase, mitochondrial", "gene_name": "IARS2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q5JPH6", "url": "https://www.uniprot.org/uniprotkb/Q5JPH6" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.15779907", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 21 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": 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"field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Human mitochondrial pyrophosphatase: cDNA cloning and analysis of the gene in patients with mtDNA depletion syndromes.", "journal": "Genomics", "date": "2006", "authors": "Curbo S, Lagier-Tourenne C, Carrozzo R, Palenzuela L, Lucioli S, Hirano M, Santorelli F, Arenas J, Karlsson A, Johansson M", "reference": { "type": "PubMed", "id": "16300924", "url": 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"Q9UGM6-1", "protein_name": "Tryptophan--tRNA ligase, mitochondrial", "gene_name": "WARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95363-1", "protein_name": "Phenylalanine--tRNA ligase, mitochondrial", "gene_name": "FARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41250-1", "protein_name": "Glycine--tRNA ligase", "gene_name": "GARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2Z4-1", "protein_name": "Tyrosine--tRNA ligase, mitochondrial", "gene_name": "YARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5JTZ9-1", "protein_name": "Alanine--tRNA ligase, mitochondrial", "gene_name": "AARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6PI48-1", "protein_name": "Aspartate--tRNA ligase, mitochondrial", "gene_name": "DARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5T160-1", "protein_name": "Probable arginine--tRNA ligase, mitochondrial", "gene_name": "RARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49590-1", "protein_name": "Histidine--tRNA ligase, mitochondrial", "gene_name": "HARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2U2-1", "protein_name": "Inorganic pyrophosphatase 2, mitochondrial", "gene_name": "PPA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5ST30-1", "protein_name": "Valine--tRNA ligase, mitochondrial", "gene_name": "VARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96GW9-1", "protein_name": "Methionine--tRNA ligase, mitochondrial", "gene_name": "MARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47897-1", "protein_name": "Glutamine--tRNA ligase", "gene_name": "QARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15046-1", "protein_name": "Lysine--tRNA ligase", "gene_name": "KARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96I59-1", "protein_name": "Asparaginyl-tRNA synthetase", "gene_name": "NARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NSE4-1", "protein_name": "Isoleucine--tRNA ligase, mitochondrial", "gene_name": "IARS2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q5JPH6", "url": "https://www.uniprot.org/uniprotkb/Q5JPH6" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.16300924", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 21 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Mitochondrial aspartyl-tRNA synthetase deficiency causes leukoencephalopathy with brain stem and spinal cord involvement and lactate elevation.", "journal": "Nature genetics", "date": "2007", "authors": "Scheper GC, van der Klok T, van Andel RJ, van Berkel CG, Sissler M, Smet J, Muravina TI, Serkov SV, Uziel G, Bugiani M, Schiffmann R, Krageloh-Mann I, Smeitink JA, Florentz C, Van Coster R, Pronk JC, van der Knaap MS", "reference": { "type": "PubMed", "id": "17384640", "url": "https://pubmed.ncbi.nlm.nih.gov/17384640" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q5JPH6-1", "protein_name": "Nondiscriminating glutamyl-tRNA synthetase EARS2, mitochondrial", "gene_name": "EARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NP81-1", "protein_name": "Serine--tRNA ligase, mitochondrial", "gene_name": "SARS2", "tax_name": "Human" }, { 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"uniprot_canonical_ac": "Q9Y2Z4-1", "protein_name": "Tyrosine--tRNA ligase, mitochondrial", "gene_name": "YARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5JTZ9-1", "protein_name": "Alanine--tRNA ligase, mitochondrial", "gene_name": "AARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6PI48-1", "protein_name": "Aspartate--tRNA ligase, mitochondrial", "gene_name": "DARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5T160-1", "protein_name": "Probable arginine--tRNA ligase, mitochondrial", "gene_name": "RARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49590-1", "protein_name": "Histidine--tRNA ligase, mitochondrial", "gene_name": "HARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2U2-1", "protein_name": "Inorganic pyrophosphatase 2, mitochondrial", "gene_name": "PPA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5ST30-1", "protein_name": "Valine--tRNA ligase, mitochondrial", "gene_name": "VARS2", "tax_name": "Human" }, { 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"o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Deleterious mutation in the mitochondrial arginyl-transfer RNA synthetase gene is associated with pontocerebellar hypoplasia.", "journal": "American journal of human genetics", "date": "2007", "authors": "Edvardson S, Shaag A, Kolesnikova O, Gomori JM, Tarassov I, Einbinder T, Saada A, Elpeleg O", "reference": { "type": "PubMed", "id": "17847012", "url": "https://pubmed.ncbi.nlm.nih.gov/17847012" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q5JPH6-1", "protein_name": "Nondiscriminating glutamyl-tRNA synthetase EARS2, mitochondrial", "gene_name": "EARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NP81-1", "protein_name": "Serine--tRNA ligase, mitochondrial", "gene_name": "SARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15031-1", "protein_name": "Leucine--tRNA ligase, mitochondrial", "gene_name": "LARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HA77-1", "protein_name": "Probable cysteine--tRNA ligase, mitochondrial", "gene_name": "CARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BW92-1", "protein_name": "Threonine--tRNA ligase, mitochondrial", "gene_name": "TARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7L3T8-1", "protein_name": "Probable proline--tRNA ligase, mitochondrial", "gene_name": "PARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UGM6-1", "protein_name": "Tryptophan--tRNA ligase, mitochondrial", "gene_name": "WARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95363-1", "protein_name": "Phenylalanine--tRNA ligase, mitochondrial", "gene_name": "FARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41250-1", "protein_name": "Glycine--tRNA ligase", "gene_name": "GARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2Z4-1", "protein_name": "Tyrosine--tRNA ligase, mitochondrial", "gene_name": "YARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5JTZ9-1", "protein_name": "Alanine--tRNA ligase, mitochondrial", "gene_name": "AARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6PI48-1", "protein_name": "Aspartate--tRNA ligase, mitochondrial", "gene_name": "DARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5T160-1", "protein_name": "Probable arginine--tRNA ligase, mitochondrial", "gene_name": "RARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49590-1", "protein_name": "Histidine--tRNA ligase, mitochondrial", "gene_name": "HARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2U2-1", "protein_name": "Inorganic pyrophosphatase 2, mitochondrial", "gene_name": "PPA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5ST30-1", "protein_name": "Valine--tRNA ligase, mitochondrial", "gene_name": "VARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96GW9-1", "protein_name": "Methionine--tRNA ligase, mitochondrial", "gene_name": "MARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47897-1", "protein_name": "Glutamine--tRNA ligase", "gene_name": "QARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15046-1", "protein_name": "Lysine--tRNA ligase", "gene_name": "KARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96I59-1", "protein_name": "Asparaginyl-tRNA synthetase", "gene_name": "NARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NSE4-1", "protein_name": "Isoleucine--tRNA ligase, mitochondrial", "gene_name": "IARS2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q5JPH6", "url": "https://www.uniprot.org/uniprotkb/Q5JPH6" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.17847012", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 21 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": 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"count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Biogenesis of glutaminyl-mt tRNAGln in human mitochondria.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2009", "authors": "Nagao A, Suzuki T, Katoh T, Sakaguchi Y, Suzuki T", "reference": { "type": "PubMed", "id": "19805282", "url": "https://pubmed.ncbi.nlm.nih.gov/19805282" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q5JPH6-1", "protein_name": "Nondiscriminating glutamyl-tRNA synthetase EARS2, mitochondrial", "gene_name": "EARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75879-1", "protein_name": "Glutamyl-tRNA(Gln) amidotransferase subunit B, mitochondrial", "gene_name": "GATB", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43716-1", "protein_name": "Glutamyl-tRNA(Gln) amidotransferase subunit C, mitochondrial", "gene_name": "GATC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0R6-1", "protein_name": "Glutamyl-tRNA(Gln) amidotransferase subunit A, mitochondrial", "gene_name": "QRSL1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q5JPH6", "url": "https://www.uniprot.org/uniprotkb/Q5JPH6" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.19805282", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { 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"protein_name": "Aldo-keto reductase family 1 member B15", "gene_name": "AKR1B15", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43676-1", "protein_name": "NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3", "gene_name": "NDUFB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5JTZ9-1", "protein_name": "Alanine--tRNA ligase, mitochondrial", "gene_name": "AARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UDW1-1", "protein_name": "Cytochrome b-c1 complex subunit 9", "gene_name": "UQCR10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HAC7-1", "protein_name": "Succinyl-CoA:glutarate CoA-transferase", "gene_name": "SUGCT", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRT2-1", "protein_name": "Ubiquinol-cytochrome c reductase complex assembly factor 2", "gene_name": "UQCC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q53H12-1", "protein_name": "Acylglycerol kinase, mitochondrial", "gene_name": "AGK", "tax_name": "Human" } ], "species": [ { 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[] } ] }, { "title": "Phenotyping mitochondrial glutamyl-tRNA synthetase deficiency (EARS2): A case series and systematic literature review.", "journal": "Neurobiology of disease", "date": "2024-10-01", "authors": "Pelayo Gon\u00e7alo, Paiva Coelho Margarida, Correia Joana, Bandeira Anabela, Nogueira C\u00e9lia, Vilarinho Laura, Martins Esmeralda", "reference": { "type": "PubMed", "id": "39173847", "url": "https://pubmed.ncbi.nlm.nih.gov/39173847" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q5JPH6-1", "protein_name": "Nondiscriminating glutamyl-tRNA synthetase EARS2, mitochondrial", "gene_name": "EARS2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q5JPH6", "url": "https://www.uniprot.org/uniprotkb/Q5JPH6" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.39173847", "abstract": "", "glycosylation": 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"uniprot_canonical_ac": "Q96I59-1", "protein_name": "Asparaginyl-tRNA synthetase", "gene_name": "NARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NSE4-1", "protein_name": "Isoleucine--tRNA ligase, mitochondrial", "gene_name": "IARS2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q5JPH6", "url": "https://www.uniprot.org/uniprotkb/Q5JPH6" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.7755634", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 22 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Evolution of the Glx-tRNA synthetase family: the glutaminyl enzyme as a case of horizontal gene transfer.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "1994", "authors": "Lamour V, Quevillon S, Diriong S, N'Guyen VC, Lipinski M, Mirande M", "reference": { "type": "PubMed", "id": "8078941", "url": "https://pubmed.ncbi.nlm.nih.gov/8078941" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q5JPH6-1", "protein_name": "Nondiscriminating glutamyl-tRNA synthetase EARS2, mitochondrial", "gene_name": "EARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NP81-1", "protein_name": "Serine--tRNA ligase, mitochondrial", "gene_name": "SARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15031-1", "protein_name": "Leucine--tRNA ligase, mitochondrial", "gene_name": "LARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HA77-1", "protein_name": "Probable cysteine--tRNA ligase, mitochondrial", "gene_name": "CARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P56192-1", "protein_name": "Methionine--tRNA ligase, cytoplasmic", "gene_name": "MARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12081-1", "protein_name": "Histidine--tRNA ligase, cytoplasmic", "gene_name": "HARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BW92-1", "protein_name": "Threonine--tRNA ligase, mitochondrial", "gene_name": "TARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P54136-1", "protein_name": "Arginine--tRNA ligase, cytoplasmic", "gene_name": "RARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7L3T8-1", "protein_name": "Probable proline--tRNA ligase, mitochondrial", "gene_name": "PARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UGM6-1", "protein_name": "Tryptophan--tRNA ligase, mitochondrial", "gene_name": "WARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49591-1", "protein_name": "Serine--tRNA ligase, cytoplasmic", "gene_name": "SARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95363-1", "protein_name": "Phenylalanine--tRNA ligase, mitochondrial", "gene_name": "FARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41250-1", "protein_name": "Glycine--tRNA ligase", "gene_name": "GARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2Z4-1", "protein_name": "Tyrosine--tRNA ligase, mitochondrial", "gene_name": "YARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P54577-1", "protein_name": "Tyrosine--tRNA ligase, cytoplasmic", "gene_name": "YARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P2J5-1", "protein_name": "Leucine--tRNA ligase, cytoplasmic", "gene_name": "LARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41252-1", "protein_name": "Isoleucine--tRNA ligase, cytoplasmic", "gene_name": "IARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49588-1", "protein_name": "Alanine--tRNA ligase, cytoplasmic", "gene_name": "AARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5JTZ9-1", "protein_name": "Alanine--tRNA ligase, mitochondrial", "gene_name": "AARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6PI48-1", "protein_name": "Aspartate--tRNA ligase, mitochondrial", "gene_name": "DARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5T160-1", "protein_name": "Probable arginine--tRNA ligase, mitochondrial", "gene_name": "RARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49590-1", "protein_name": "Histidine--tRNA ligase, mitochondrial", "gene_name": "HARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2U2-1", "protein_name": "Inorganic pyrophosphatase 2, mitochondrial", "gene_name": "PPA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15181-1", "protein_name": "Inorganic pyrophosphatase", "gene_name": "PPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5ST30-1", "protein_name": "Valine--tRNA ligase, mitochondrial", "gene_name": "VARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96GW9-1", "protein_name": "Methionine--tRNA ligase, mitochondrial", "gene_name": "MARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12904-1", "protein_name": "Aminoacyl tRNA synthase complex-interacting multifunctional protein 1", "gene_name": "AIMP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13155-1", "protein_name": "Aminoacyl tRNA synthase complex-interacting multifunctional protein 2", "gene_name": "AIMP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y285-1", "protein_name": "Phenylalanine--tRNA ligase alpha subunit", "gene_name": "FARSA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47897-1", "protein_name": "Glutamine--tRNA ligase", "gene_name": "QARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14868-1", "protein_name": "Aspartate--tRNA ligase, cytoplasmic", "gene_name": "DARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15046-1", "protein_name": "Lysine--tRNA ligase", "gene_name": "KARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23381-1", "protein_name": "Tryptophan--tRNA ligase, cytoplasmic", "gene_name": "WARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43324-1", "protein_name": "Eukaryotic translation elongation factor 1 epsilon-1", "gene_name": "EEF1E1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26640-1", "protein_name": "Valine--tRNA ligase", "gene_name": "VARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07814-1", "protein_name": "Bifunctional glutamate/proline--tRNA ligase", "gene_name": "EPRS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43776-1", "protein_name": "Asparagine--tRNA ligase, cytoplasmic", "gene_name": "NARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49589-1", "protein_name": "Cysteine--tRNA ligase, cytoplasmic", "gene_name": "CARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96I59-1", "protein_name": "Asparaginyl-tRNA synthetase", "gene_name": "NARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NSD9-1", "protein_name": "Phenylalanine--tRNA ligase beta subunit", "gene_name": "FARSB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NSE4-1", "protein_name": "Isoleucine--tRNA ligase, mitochondrial", "gene_name": "IARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26639-1", "protein_name": "Threonine--tRNA ligase 1, cytoplasmic", "gene_name": "TARS1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q5JPH6", "url": "https://www.uniprot.org/uniprotkb/Q5JPH6" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.8078941", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 42 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Human lysyl-tRNA synthetase accepts nucleotide 73 variants and rescues Escherichia coli double-defective mutant.", "journal": "The Journal of biological chemistry", "date": "1997", "authors": "Shiba K, Stello T, Motegi H, Noda T, Musier-Forsyth K, Schimmel P", "reference": { "type": "PubMed", "id": "9278442", "url": "https://pubmed.ncbi.nlm.nih.gov/9278442" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q5JPH6-1", "protein_name": "Nondiscriminating glutamyl-tRNA synthetase EARS2, mitochondrial", "gene_name": "EARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NP81-1", "protein_name": "Serine--tRNA ligase, mitochondrial", "gene_name": "SARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15031-1", "protein_name": "Leucine--tRNA ligase, mitochondrial", "gene_name": "LARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HA77-1", "protein_name": "Probable cysteine--tRNA ligase, mitochondrial", "gene_name": "CARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P56192-1", "protein_name": "Methionine--tRNA ligase, cytoplasmic", "gene_name": "MARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12081-1", "protein_name": "Histidine--tRNA ligase, cytoplasmic", "gene_name": "HARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BW92-1", "protein_name": "Threonine--tRNA ligase, mitochondrial", "gene_name": "TARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P54136-1", "protein_name": "Arginine--tRNA ligase, cytoplasmic", "gene_name": "RARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7L3T8-1", "protein_name": "Probable proline--tRNA ligase, mitochondrial", "gene_name": "PARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UGM6-1", "protein_name": "Tryptophan--tRNA ligase, mitochondrial", "gene_name": "WARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49591-1", "protein_name": "Serine--tRNA ligase, cytoplasmic", "gene_name": "SARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95363-1", "protein_name": "Phenylalanine--tRNA ligase, mitochondrial", "gene_name": "FARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41250-1", "protein_name": "Glycine--tRNA ligase", "gene_name": "GARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2Z4-1", "protein_name": "Tyrosine--tRNA ligase, mitochondrial", "gene_name": "YARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P54577-1", "protein_name": "Tyrosine--tRNA ligase, cytoplasmic", "gene_name": "YARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P2J5-1", "protein_name": "Leucine--tRNA ligase, cytoplasmic", "gene_name": "LARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41252-1", "protein_name": "Isoleucine--tRNA ligase, cytoplasmic", "gene_name": "IARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49588-1", "protein_name": "Alanine--tRNA ligase, cytoplasmic", "gene_name": "AARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5JTZ9-1", "protein_name": "Alanine--tRNA ligase, mitochondrial", "gene_name": "AARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6PI48-1", "protein_name": "Aspartate--tRNA ligase, mitochondrial", "gene_name": "DARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5T160-1", "protein_name": "Probable arginine--tRNA ligase, mitochondrial", "gene_name": "RARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49590-1", "protein_name": "Histidine--tRNA ligase, mitochondrial", "gene_name": "HARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2U2-1", "protein_name": "Inorganic pyrophosphatase 2, mitochondrial", "gene_name": "PPA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15181-1", "protein_name": "Inorganic pyrophosphatase", "gene_name": "PPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5ST30-1", "protein_name": "Valine--tRNA ligase, mitochondrial", "gene_name": "VARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96GW9-1", "protein_name": "Methionine--tRNA ligase, mitochondrial", "gene_name": "MARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12904-1", "protein_name": "Aminoacyl tRNA synthase complex-interacting multifunctional protein 1", "gene_name": "AIMP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13155-1", "protein_name": "Aminoacyl tRNA synthase complex-interacting multifunctional protein 2", "gene_name": "AIMP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y285-1", "protein_name": "Phenylalanine--tRNA ligase alpha subunit", "gene_name": "FARSA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47897-1", "protein_name": "Glutamine--tRNA ligase", "gene_name": "QARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14868-1", "protein_name": "Aspartate--tRNA ligase, cytoplasmic", "gene_name": "DARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15046-1", "protein_name": "Lysine--tRNA ligase", "gene_name": "KARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23381-1", "protein_name": "Tryptophan--tRNA ligase, cytoplasmic", "gene_name": "WARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43324-1", "protein_name": "Eukaryotic translation elongation factor 1 epsilon-1", "gene_name": "EEF1E1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26640-1", "protein_name": "Valine--tRNA ligase", "gene_name": "VARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07814-1", "protein_name": "Bifunctional glutamate/proline--tRNA ligase", "gene_name": "EPRS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43776-1", "protein_name": "Asparagine--tRNA ligase, cytoplasmic", "gene_name": "NARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49589-1", "protein_name": "Cysteine--tRNA ligase, cytoplasmic", "gene_name": "CARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96I59-1", "protein_name": "Asparaginyl-tRNA synthetase", "gene_name": "NARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NSD9-1", "protein_name": "Phenylalanine--tRNA ligase beta subunit", "gene_name": "FARSB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NSE4-1", "protein_name": "Isoleucine--tRNA ligase, mitochondrial", "gene_name": "IARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P26639-1", "protein_name": "Threonine--tRNA ligase 1, cytoplasmic", "gene_name": "TARS1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q5JPH6", "url": "https://www.uniprot.org/uniprotkb/Q5JPH6" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.9278442", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 42 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": 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"count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Isoleucylation properties of native human mitochondrial tRNAIle and tRNAIle transcripts. Implications for cardiomyopathy-related point mutations (4269, 4317) in the tRNAIle gene.", "journal": "Human molecular genetics", "date": "1998", "authors": "Degoul F, Brule H, Cepanec C, Helm M, Marsac C, Leroux J, Giege R, Florentz C", "reference": { "type": "PubMed", "id": "9466989", "url": "https://pubmed.ncbi.nlm.nih.gov/9466989" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q5JPH6-1", "protein_name": "Nondiscriminating glutamyl-tRNA synthetase EARS2, mitochondrial", "gene_name": "EARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NP81-1", "protein_name": "Serine--tRNA ligase, mitochondrial", "gene_name": "SARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15031-1", "protein_name": "Leucine--tRNA ligase, mitochondrial", "gene_name": "LARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HA77-1", "protein_name": "Probable cysteine--tRNA ligase, mitochondrial", "gene_name": "CARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BW92-1", "protein_name": "Threonine--tRNA ligase, mitochondrial", "gene_name": "TARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7L3T8-1", "protein_name": "Probable proline--tRNA ligase, mitochondrial", "gene_name": "PARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UGM6-1", "protein_name": "Tryptophan--tRNA ligase, mitochondrial", "gene_name": "WARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95363-1", "protein_name": "Phenylalanine--tRNA ligase, mitochondrial", "gene_name": "FARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41250-1", "protein_name": "Glycine--tRNA ligase", "gene_name": "GARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2Z4-1", "protein_name": "Tyrosine--tRNA ligase, mitochondrial", "gene_name": "YARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5JTZ9-1", "protein_name": "Alanine--tRNA ligase, mitochondrial", "gene_name": "AARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6PI48-1", "protein_name": "Aspartate--tRNA ligase, mitochondrial", "gene_name": "DARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5T160-1", "protein_name": "Probable arginine--tRNA ligase, mitochondrial", "gene_name": "RARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49590-1", "protein_name": "Histidine--tRNA ligase, mitochondrial", "gene_name": "HARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2U2-1", "protein_name": "Inorganic pyrophosphatase 2, mitochondrial", "gene_name": "PPA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5ST30-1", "protein_name": "Valine--tRNA ligase, mitochondrial", "gene_name": "VARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96GW9-1", "protein_name": "Methionine--tRNA ligase, mitochondrial", "gene_name": "MARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P47897-1", "protein_name": "Glutamine--tRNA ligase", "gene_name": "QARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15046-1", "protein_name": "Lysine--tRNA ligase", "gene_name": "KARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96I59-1", "protein_name": "Asparaginyl-tRNA synthetase", "gene_name": "NARS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NSE4-1", "protein_name": "Isoleucine--tRNA ligase, mitochondrial", "gene_name": "IARS2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q5JPH6", "url": "https://www.uniprot.org/uniprotkb/Q5JPH6" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.9466989", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 21 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", 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Biophys. Acta", "date": "1999", "authors": "Chen X, Hamon M, Deng Z, Centola M, Sood R, Taylor K, Kastner DL, Fischel-Ghodsian N", "reference": { "type": "PubMed", "id": "10023065", "url": "https://pubmed.ncbi.nlm.nih.gov/10023065" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O14771-1", "protein_name": "Zinc finger protein 213", "gene_name": "ZNF213", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "O14771", "url": "https://www.uniprot.org/uniprotkb/O14771" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.10023065", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { 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"name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "O14771", "url": "https://www.uniprot.org/uniprotkb/O14771" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.33939216", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { 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"o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Genomic structures of SCN2A and SCN3A -- candidate genes for deafness at the DFNA16 locus.", "journal": "Gene", "date": "2001", "authors": "Kasai N, Fukushima K, Ueki Y, Prasad S, Nosakowski J, Sugata K, Sugata A, Nishizaki K, Meyer N C, Smith R J", "reference": { "type": "PubMed", "id": "11245985", "url": "https://pubmed.ncbi.nlm.nih.gov/11245985" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9NY46-1", "protein_name": "Sodium channel protein type 3 subunit alpha", "gene_name": "SCN3A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99250-1", "protein_name": "Sodium channel protein type 2 subunit alpha", "gene_name": "SCN2A", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9NY46", "url": "https://www.uniprot.org/uniprotkb/Q9NY46" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.11245985", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } 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{ "uniprot_canonical_ac": "P02008-1", "protein_name": "Hemoglobin subunit zeta", "gene_name": "HBZ", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08378-1", "protein_name": "Golgin subfamily A member 3", "gene_name": "GOLGA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NVN8-1", "protein_name": "Guanine nucleotide-binding protein-like 3-like protein", "gene_name": "GNL3L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01308-1", "protein_name": "Insulin", "gene_name": "INS", "tax_name": "Human" }, { "uniprot_canonical_ac": "P05019-1", "protein_name": "Insulin-like growth factor 1", "gene_name": "IGF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96F46-1", "protein_name": "Interleukin-17 receptor A", "gene_name": "IL17RA", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43157-1", "protein_name": "Plexin-B1", "gene_name": "PLXNB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "A6NNE9-1", "protein_name": "E3 ubiquitin-protein ligase MARCHF11", "gene_name": 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"o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Mutations in the sodium channel genes SCN1A, SCN3A, and SCN9A in children with epilepsy with febrile seizures plus(EFS+).", "journal": "Seizure", "date": "2021", "authors": "Ma H, Guo Y, Chen Z, Wang L, Tang Z, Zhang J, Miao Q, Zhai Q", "reference": { "type": "PubMed", "id": "33895391", "url": "https://pubmed.ncbi.nlm.nih.gov/33895391" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9NY46-1", "protein_name": "Sodium channel protein type 3 subunit alpha", "gene_name": "SCN3A", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9NY46", "url": "https://www.uniprot.org/uniprotkb/Q9NY46" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.33895391", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], 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