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Opin. 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"n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The crystal structure of the novel calcium-binding protein AtCBL2 from Arabidopsis thaliana.", "journal": "J. Biol. Chem.", "date": "2003", "authors": "Nagae Masamichi, Nozawa Akira, Koizumi Nozomu, Sano Hiroshi, Hashimoto Hiroshi, Sato Mamoru, Shimizu Toshiyuki", "reference": { "type": "PubMed", "id": "12871972", "url": "https://pubmed.ncbi.nlm.nih.gov/12871972" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8LAS7-1", "protein_name": "Calcineurin B-like protein 2", "gene_name": "CBL2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8LAS7", "url": "https://www.uniprot.org/uniprotkb/Q8LAS7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.12871972", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A protein kinase, interacting with two calcineurin B-like proteins, regulates K+ transporter AKT1 in Arabidopsis.", "journal": "Cell", "date": "2006", "authors": "Xu Jiang, Li Hao-Dong, Chen Li-Qing, Wang Yi, Liu Li-Li, He Liu, Wu Wei-Hua", "reference": { "type": "PubMed", "id": "16814720", "url": "https://pubmed.ncbi.nlm.nih.gov/16814720" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8LAS7-1", "protein_name": "Calcineurin B-like protein 2", "gene_name": "CBL2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FUQ7-1", "protein_name": "Calcineurin B-like protein 8", "gene_name": "CBL8", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q7FZF1-1", "protein_name": "Calcineurin B-like protein 5", "gene_name": "CBL5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O81445-1", "protein_name": "Calcineurin B-like protein 1", "gene_name": "CBL1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q93VD3-1", "protein_name": "CBL-interacting serine/threonine-protein kinase 23", "gene_name": "CIPK23", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8LEM7-1", "protein_name": "Calcineurin B-like protein 3", "gene_name": "CBL3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q38998-1", "protein_name": "Potassium channel AKT1", "gene_name": "AKT1; KT1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LTB8-1", 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0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A protein phosphorylation/dephosphorylation network regulates a plant potassium channel.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2007-10-02", "authors": "Lee Sung Chul, Lan Wen-Zhi, Kim Beom-Gi, Li Legong, Cheong Yong Hwa, Pandey Girdhar K, Lu Guihua, Buchanan Bob B, Luan Sheng", "reference": { "type": "PubMed", "id": "17898163", "url": "https://pubmed.ncbi.nlm.nih.gov/17898163" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8LAS7-1", "protein_name": "Calcineurin B-like protein 2", "gene_name": "CBL2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LNW3-1", "protein_name": "Protein phosphatase 2C 3", "gene_name": "AIP1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SEZ7-1", "protein_name": "CBL-interacting serine/threonine-protein kinase 16", "gene_name": "CIPK16", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O81445-1", "protein_name": "Calcineurin B-like protein 1", "gene_name": "CBL1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O65554-1", "protein_name": "CBL-interacting serine/threonine-protein kinase 6", "gene_name": "CIPK6", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q93VD3-1", "protein_name": "CBL-interacting serine/threonine-protein kinase 23", "gene_name": "CIPK23", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8LEM7-1", "protein_name": "Calcineurin B-like protein 3", "gene_name": "CBL3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q38998-1", "protein_name": "Potassium channel AKT1", "gene_name": "AKT1; KT1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LTB8-1", "protein_name": "Calcineurin B-like protein 9", "gene_name": "CBL9", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8LAS7", "url": "https://www.uniprot.org/uniprotkb/Q8LAS7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.17898163", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 9 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The crystal structure of plant-specific calcium-binding protein AtCBL2 in complex with the regulatory domain of AtCIPK14.", "journal": "Journal of molecular biology", "date": "2008-03-14", "authors": "Akaboshi Mayuko, Hashimoto Hiroshi, Ishida Hanako, Saijo Shinya, Koizumi Nozomu, Sato Mamoru, Shimizu Toshiyuki", "reference": { "type": "PubMed", "id": "18237745", "url": "https://pubmed.ncbi.nlm.nih.gov/18237745" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8LAS7-1", "protein_name": "Calcineurin B-like protein 2", "gene_name": "CBL2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LZW4-1", "protein_name": "CBL-interacting serine/threonine-protein kinase 14", "gene_name": "CIPK14", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8LAS7", "url": "https://www.uniprot.org/uniprotkb/Q8LAS7" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "mutagenesis": [ { "start_pos": 106, 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"field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A protein kinase, calcineurin B-like protein-interacting protein Kinase9, interacts with calcium sensor calcineurin B-like Protein3 and regulates potassium homeostasis under low-potassium stress in Arabidopsis.", "journal": "Plant Physiol.", "date": "2013", "authors": "Liu Li-Li, Ren Hui-Min, Chen Li-Qing, Wang Yi, Wu Wei-Hua", "reference": { "type": "PubMed", "id": "23109687", "url": "https://pubmed.ncbi.nlm.nih.gov/23109687" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8LAS7-1", "protein_name": "Calcineurin B-like protein 2", "gene_name": "CBL2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9MAM1-3", "protein_name": "CBL-interacting serine/threonine-protein kinase 9", "gene_name": "CIPK9", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8LEM7-1", "protein_name": "Calcineurin B-like protein 3", "gene_name": "CBL3", 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"journal": "Nature communications", "date": "2013", "authors": "Kobayashi Takanori, Nagasaka Seiji, Senoura Takeshi, Itai Reiko Nakanishi, Nakanishi Hiromi, Nishizawa Naoko K", "reference": { "type": "PubMed", "id": "24253678", "url": "https://pubmed.ncbi.nlm.nih.gov/24253678" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8LPQ5-1", "protein_name": "Zinc finger protein BRUTUS", "gene_name": "BTS", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8LPQ5", "url": "https://www.uniprot.org/uniprotkb/Q8LPQ5" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.24253678", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", 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Cell", "date": "2008", "authors": "Saijo Yusuke, Zhu Danmeng, Li Jigang, Rubio Vicente, Zhou Zhenzhen, Shen Yunping, Hoecker Ute, Wang Haiyang, Deng Xing Wang", "reference": { "type": "PubMed", "id": "18722184", "url": "https://pubmed.ncbi.nlm.nih.gov/18722184" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8S4Q6-1", "protein_name": "Protein FAR-RED ELONGATED HYPOCOTYL 1", "gene_name": "FHY1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SYX2-1", "protein_name": "Protein SUPPRESSOR OF PHYA-105 1", "gene_name": "SPA1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LIE5-1", "protein_name": "Protein FAR-RED ELONGATED HYPOCOTYL 3", "gene_name": "FHY3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P14712-1", "protein_name": "Phytochrome A", "gene_name": "PHYA", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P43254-1", "protein_name": "E3 ubiquitin-protein ligase COP1", "gene_name": "COP1", 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"field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A cell-free system for light-dependent nuclear import of phytochrome.", "journal": "Plant J.", "date": "2009", "authors": "Pfeiffer Anne, Kunkel Tim, Hiltbrunner Andreas, Neuhaus Gunther, Wolf Iris, Speth Volker, Adam Eva, Nagy Ferenc, Sch\u00e4fer Eberhard", "reference": { "type": "PubMed", "id": "18980642", "url": "https://pubmed.ncbi.nlm.nih.gov/18980642" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8S4Q6-1", "protein_name": "Protein FAR-RED ELONGATED HYPOCOTYL 1", "gene_name": "FHY1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8S4Q6", "url": "https://www.uniprot.org/uniprotkb/Q8S4Q6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": 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Suhua, Li Jigang, Tan-Wilson Anna, Qu Li-Jia, Wang Haiyang, Deng Xing Wang", "reference": { "type": "PubMed", "id": "19208901", "url": "https://pubmed.ncbi.nlm.nih.gov/19208901" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8S4Q6-1", "protein_name": "Protein FAR-RED ELONGATED HYPOCOTYL 1", "gene_name": "FHY1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "A8MR65-1", "protein_name": "Protein FAR-RED-ELONGATED HYPOCOTYL 1-LIKE", "gene_name": "FHL", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P14712-1", "protein_name": "Phytochrome A", "gene_name": "PHYA", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8S4Q6", "url": "https://www.uniprot.org/uniprotkb/Q8S4Q6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.19208901", "abstract": 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"journal": "Cell", "date": "2011", "authors": "Rausenberger Julia, Tscheuschler Anke, Nordmeier Wiebke, W\u00fcst Florian, Timmer Jens, Sch\u00e4fer Eberhard, Fleck Christian, Hiltbrunner Andreas", "reference": { "type": "PubMed", "id": "21884939", "url": "https://pubmed.ncbi.nlm.nih.gov/21884939" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8S4Q6-1", "protein_name": "Protein FAR-RED ELONGATED HYPOCOTYL 1", "gene_name": "FHY1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "A8MR65-1", "protein_name": "Protein FAR-RED-ELONGATED HYPOCOTYL 1-LIKE", "gene_name": "FHL", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P14712-1", "protein_name": "Phytochrome A", "gene_name": "PHYA", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8S4Q6", "url": "https://www.uniprot.org/uniprotkb/Q8S4Q6" } ], "common_name": "Mouse-ear cress", 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Bindics J\u00e1nos, Kircher Stefan, \u00c1d\u00e1m \u00c9va, Sch\u00e4fer Eberhard, Nagy Ferenc, Viczi\u00e1n Andr\u00e1s", "reference": { "type": "PubMed", "id": "21969386", "url": "https://pubmed.ncbi.nlm.nih.gov/21969386" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8S4Q6-1", "protein_name": "Protein FAR-RED ELONGATED HYPOCOTYL 1", "gene_name": "FHY1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "A8MR65-1", "protein_name": "Protein FAR-RED-ELONGATED HYPOCOTYL 1-LIKE", "gene_name": "FHL", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P14712-1", "protein_name": "Phytochrome A", "gene_name": "PHYA", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8S4Q6", "url": "https://www.uniprot.org/uniprotkb/Q8S4Q6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } 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"title": "Photoreceptor partner FHY1 has an independent role in gene modulation and plant development under far-red light.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2014-08-12", "authors": "Chen Fang, Li Bosheng, Demone Jordan, Charron Jean-Benoit, Shi Xiarong, Deng Xing Wang", "reference": { "type": "PubMed", "id": "25071219", "url": "https://pubmed.ncbi.nlm.nih.gov/25071219" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8S4Q6-1", "protein_name": "Protein FAR-RED ELONGATED HYPOCOTYL 1", "gene_name": "FHY1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8S4Q6", "url": "https://www.uniprot.org/uniprotkb/Q8S4Q6" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.25071219", "abstract": "", 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biophysica acta", "date": "2004-08-12", "authors": "Addepalli Balasubrahmanyam, Meeks Lisa R, Forbes Kevin P, Hunt Arthur G", "reference": { "type": "PubMed", "id": "15297145", "url": "https://pubmed.ncbi.nlm.nih.gov/15297145" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8VYW1-1", "protein_name": "Nuclear poly(A) polymerase 4", "gene_name": "PAPS4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LMT2-1", "protein_name": "Nuclear poly(A) polymerase 1", "gene_name": "PAPS1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q56XM9-1", "protein_name": "Nuclear poly(A) polymerase 3", "gene_name": "PAPS3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O82312-1", "protein_name": "Nuclear poly(A) polymerase 2", "gene_name": "PAPS2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8VYW1", "url": "https://www.uniprot.org/uniprotkb/Q8VYW1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.15297145", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", 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"o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Characterization of genes encoding poly(A) polymerases in plants: evidence for duplication and functional specialization.", "journal": "PloS one", "date": "2009-11-26", "authors": "Meeks Lisa R, Addepalli Balasubrahmanyam, Hunt Arthur G", "reference": { "type": "PubMed", "id": "19956626", "url": "https://pubmed.ncbi.nlm.nih.gov/19956626" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8VYW1-1", "protein_name": "Nuclear poly(A) polymerase 4", "gene_name": "PAPS4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LMT2-1", "protein_name": "Nuclear poly(A) polymerase 1", "gene_name": "PAPS1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q56XM9-1", "protein_name": "Nuclear poly(A) polymerase 3", "gene_name": "PAPS3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O82312-1", "protein_name": "Nuclear poly(A) polymerase 2", "gene_name": "PAPS2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8VYW1", "url": "https://www.uniprot.org/uniprotkb/Q8VYW1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.19956626", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", 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high content in lipid-modified peripheral proteins and integral receptor kinases features in the arabidopsis plasma membrane proteome.", "journal": "Mol. Cell. Proteomics", "date": "2007", "authors": "Marmagne Anne, Ferro Myriam, Meinnel Thierry, Bruley Christophe, Kuhn Lauriane, Garin J\u00e9rome, Barbier-Brygoo H\u00e9l\u00e8ne, Ephritikhine Genevi\u00e8ve", "reference": { "type": "PubMed", "id": "17644812", "url": "https://pubmed.ncbi.nlm.nih.gov/17644812" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8VZG8-1", "protein_name": "MDIS1-interacting receptor like kinase 2", "gene_name": "MIK2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LX66-1", "protein_name": "Receptor-like protein kinase HERK 1", "gene_name": "HERK1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SKB2-1", "protein_name": "Leucine-rich repeat receptor-like serine/threonine/tyrosine-protein kinase SOBIR1", "gene_name": "SOBIR1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q96262-1", "protein_name": "Plasma membrane-associated cation-binding protein 1", "gene_name": "PCAP1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SRH6-1", "protein_name": "Hypersensitive-induced response protein 3", "gene_name": "HIR3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8H1G6-1", "protein_name": "Protein CYTOSOLIC ABA RECEPTOR KINASE 7", "gene_name": "CARK7", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FM85-1", "protein_name": "Probable serine/threonine-protein kinase PBL16", "gene_name": "PBL16", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SCT4-1", "protein_name": "Probably inactive leucine-rich repeat receptor-like protein kinase IMK2", "gene_name": "IMK2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9XID3-1", "protein_name": "G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300", "gene_name": "F23M19.5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SCZ4-1", "protein_name": "Receptor-like protein kinase FERONIA", "gene_name": "FER", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O80623-1", "protein_name": "Probable receptor-like protein kinase At2g39360", "gene_name": "F12L6.2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9ASS4-1", "protein_name": "Probably inactive leucine-rich repeat receptor-like protein kinase At5g48380", "gene_name": "K23F3.10; MJE7.1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9CAR7-1", "protein_name": "Hypersensitive-induced response protein 2", "gene_name": "HIR2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FFW5-1", "protein_name": "Proline-rich receptor-like protein kinase PERK8", "gene_name": "PERK8", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FIM9-1", "protein_name": "CDPK-related kinase 4", "gene_name": "CRK4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FM19-1", "protein_name": "Hypersensitive-induced response protein 1", "gene_name": "HIR1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LK35-1", "protein_name": "Receptor-like protein kinase THESEUS 1", "gene_name": "THE1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FHM7-1", "protein_name": "Hypersensitive-induced response protein 4", "gene_name": "HIR4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FLW0-1", "protein_name": "Probable receptor-like protein kinase At5g24010", "gene_name": "MZF18.11", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FDX9-1", "protein_name": "Guanine nucleotide-binding protein subunit gamma 1", "gene_name": "GG1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "B9DFG5-1", "protein_name": "Protein CYTOSOLIC ABA RECEPTOR KINASE 5", "gene_name": "CARK5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "C0LGN2-1", "protein_name": "Probable leucine-rich repeat receptor-like serine/threonine-protein kinase At3g14840", "gene_name": "LRR-RLK", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "C0LGS2-1", "protein_name": "Probable LRR receptor-like serine/threonine-protein kinase At4g36180", "gene_name": "F23E13.70", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SSL9-1", "protein_name": "Leucine-rich repeat receptor-like protein kinase PEPR1", "gene_name": "PEPR1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LV48-1", "protein_name": "Proline-rich receptor-like protein kinase PERK1", "gene_name": "PERK1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SXB8-1", "protein_name": "G-type lectin S-receptor-like serine/threonine-protein kinase At1g11330", "gene_name": "RDA2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9M9E0-1", "protein_name": "L-type lectin-domain containing receptor kinase S.1", "gene_name": "LECRKS1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q8VZG8", "url": "https://www.uniprot.org/uniprotkb/Q8VZG8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.17644812", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 27 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": 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[] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Structural basis of abscisic acid signalling.", "journal": "Nature", "date": "2009-12-03", 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"uniprot_canonical_ac": "Q0WSN2-1", "protein_name": "Protein DA1-related 2", "gene_name": "DAR2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q93Z00", "url": "https://www.uniprot.org/uniprotkb/Q93Z00" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.25757472", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { 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"database": "UniProtKB", "id": "Q93Z00", "url": "https://www.uniprot.org/uniprotkb/Q93Z00" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "mutagenesis": [ { "start_pos": 202, "end_pos": 207, "sequence_org": "RSAAST", "sequence_mut": "NAAIRS", "comment": "Unable to interact with the Pseudomonas syringae type III effector HopBB1.", "evidence": [ { "database": "UniProtKB", "id": "Q93Z00", "url": "https://www.uniprot.org/uniprotkb/Q93Z00" }, { "database": "PubMed", "id": "28132837", "url": "https://pubmed.ncbi.nlm.nih.gov/28132837" } ], "uniprot_canonical_ac": "Q93Z00-1" } ], "record_id": "pubmed.28132837", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": 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Plant Sci.", "date": "2017", "authors": "Mazur Magdalena J, Spears Benjamin J, Djajasaputra Andr\u00e9, van der Gragt Michelle, Vlachakis Georgios, Beerens Bas, Gassmann Walter, van den Burg Harrold A", "reference": { "type": "PubMed", "id": "29250092", "url": "https://pubmed.ncbi.nlm.nih.gov/29250092" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q93Z00-1", "protein_name": "Transcription factor TCP14", "gene_name": "TCP14", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9C9L2-1", "protein_name": "Transcription factor TCP15", "gene_name": "TCP15", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q42551-1", "protein_name": "SUMO-conjugating enzyme SCE1", "gene_name": "SCE1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q93Z00", "url": "https://www.uniprot.org/uniprotkb/Q93Z00" } ], "common_name": "Mouse-ear cress", "glygen_name": 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "ORANGE Represses Chloroplast Biogenesis in Etiolated Arabidopsis Cotyledons via Interaction with TCP14.", "journal": "The Plant cell", "date": 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biosynthesis, which synchronizes pollen maturation, anther dehiscence, and flower opening in Arabidopsis.", "journal": "The Plant cell", "date": "2001-10", "authors": "Ishiguro S, Kawai-Oda A, Ueda J, Nishida I, Okada K", "reference": { "type": "PubMed", "id": "11595796", "url": "https://pubmed.ncbi.nlm.nih.gov/11595796" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q948R1-1", "protein_name": "Phospholipase A(1) DAD1, chloroplastic", "gene_name": "DAD1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q948R1", "url": "https://www.uniprot.org/uniprotkb/Q948R1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.11595796", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": 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"Enzymatic characterization of class I DAD1-like acylhydrolase members targeted to chloroplast in Arabidopsis.", "journal": "FEBS letters", "date": "2009-07-07", "authors": "Seo Young Sam, Kim Eun Yu, Kim Jeong Hoe, Kim Woo Taek", "reference": { "type": "PubMed", "id": "19527719", "url": "https://pubmed.ncbi.nlm.nih.gov/19527719" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q948R1-1", "protein_name": "Phospholipase A(1) DAD1, chloroplastic", "gene_name": "DAD1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O23522-1", "protein_name": "Phospholipase A1-Ibeta2, chloroplastic", "gene_name": "FCAALL.42; dl4435w", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q941F1-1", "protein_name": "Phospholipase A1-Igamma1, chloroplastic", "gene_name": "CRTISO; DALL4; PLA-I{GAMMA}1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9C8J6-1", "protein_name": "Phospholipase A1-Igamma3, chloroplastic", "gene_name": "DALL2", 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"field": "total", "count": 7 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "DONGLE and DEFECTIVE IN ANTHER DEHISCENCE1 lipases are not essential for wound- and pathogen-induced jasmonate biosynthesis: redundant lipases contribute to jasmonate formation.", "journal": "Plant physiology", "date": "2010-05", "authors": "Ellinger Dorothea, Stingl Nadja, Kubigsteltig Ines Ingeborg, Bals Thomas, Juenger Melanie, Pollmann Stephan, Berger Susanne, Schuenemann Danja, Mueller Martin Johannes", "reference": { 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"Galactolipase DONGLE, chloroplastic", "gene_name": "DGL", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SIN9-1", "protein_name": "Phospholipase A1-Ialpha2, chloroplastic", "gene_name": "DALL5", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q948R1", "url": "https://www.uniprot.org/uniprotkb/Q948R1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.20348210", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Wound-induced expression of DEFECTIVE IN ANTHER DEHISCENCE1 and DAD1-like lipase genes is mediated by both CORONATINE INSENSITIVE1-dependent and independent pathways in Arabidopsis thaliana.", "journal": "Plant Cell Rep.", "date": "2014", "authors": "Rudu\u015b Izabela, Terai Haruka, Shimizu Takafumi, Kojima Hisae, Hattori Kazuki, Nishimori Yuka, Tsukagoshi Hironaka, Kamiya Yuji, Seo Mitsunori, Nakamura Kenzo, K\u0119pczy\u0144ski Jan, Ishiguro Sumie", "reference": { "type": "PubMed", "id": "24430866", "url": "https://pubmed.ncbi.nlm.nih.gov/24430866" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q948R1-1", "protein_name": "Phospholipase A(1) DAD1, chloroplastic", "gene_name": "DAD1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q941F1-1", "protein_name": "Phospholipase A1-Igamma1, chloroplastic", "gene_name": "CRTISO; DALL4; PLA-I{GAMMA}1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9C8J6-1", "protein_name": "Phospholipase A1-Igamma3, chloroplastic", "gene_name": "DALL2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q3EBR6-1", "protein_name": "Phospholipase A1-Igamma2, chloroplastic", "gene_name": "DALL3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9MA46-1", "protein_name": "Galactolipase DONGLE, chloroplastic", "gene_name": "DGL", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SIN9-1", "protein_name": "Phospholipase A1-Ialpha2, chloroplastic", "gene_name": "DALL5", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q948R1", "url": "https://www.uniprot.org/uniprotkb/Q948R1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.24430866", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Subcellular localization and oligomerization of the Arabidopsis thaliana somatic embryogenesis receptor kinase 1 protein.", "journal": "J. Mol. Biol.", "date": "2001", "authors": "Shah K, Gadella T W, van Erp H, Hecht V, de Vries S C", "reference": { "type": "PubMed", "id": "11397085", "url": "https://pubmed.ncbi.nlm.nih.gov/11397085" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q94AG2-1", "protein_name": "Somatic embryogenesis receptor kinase 1", "gene_name": "SERK1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.11397085", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Role of threonines in the Arabidopsis thaliana somatic embryogenesis receptor kinase 1 activation loop in phosphorylation.", "journal": "The Journal of biological chemistry", "date": "2001-11-02", "authors": "Shah K, Vervoort J, de Vries S C", "reference": { "type": "PubMed", "id": "11509554", "url": "https://pubmed.ncbi.nlm.nih.gov/11509554" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q94AG2-1", "protein_name": "Somatic embryogenesis receptor kinase 1", "gene_name": "SERK1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "mutagenesis": [ { "start_pos": 330, "end_pos": 330, "sequence_org": "K", "sequence_mut": "E", "comment": "Loss of kinase activity.", "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" }, { "database": "PubMed", "id": "11509554", "url": "https://pubmed.ncbi.nlm.nih.gov/11509554" } ], "uniprot_canonical_ac": "Q94AG2-1" }, { "start_pos": 459, "end_pos": 459, "sequence_org": "T", "sequence_mut": "A", "comment": "No effect.", "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" }, { "database": "PubMed", "id": "11509554", "url": 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Loss of kinase activity; when associated with A,E-463 and A,E-468.", "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" }, { "database": "PubMed", "id": "11509554", "url": "https://pubmed.ncbi.nlm.nih.gov/11509554" } ], "uniprot_canonical_ac": "Q94AG2-1" }, { "start_pos": 462, "end_pos": 462, "sequence_org": "T", "sequence_mut": "E", "comment": "Decreased kinase activity. Loss of kinase activity; when associated with A,E-463 and A,E-468.", "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" }, { "database": "PubMed", "id": "11509554", "url": "https://pubmed.ncbi.nlm.nih.gov/11509554" } ], "uniprot_canonical_ac": "Q94AG2-1" }, { "start_pos": 463, "end_pos": 463, "sequence_org": "T", "sequence_mut": "A", "comment": "Loss of autophosphorylation. Loss of kinase activity; when associated with A,E-462 and A,E-468.", "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" }, { "database": "PubMed", "id": "11509554", "url": "https://pubmed.ncbi.nlm.nih.gov/11509554" } ], "uniprot_canonical_ac": "Q94AG2-1" }, { "start_pos": 463, "end_pos": 463, "sequence_org": "T", "sequence_mut": "E", "comment": "Loss of autophosphorylation. Loss of kinase activity; when associated with A,E-462 and A,E-468.", "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" }, { "database": "PubMed", "id": "11509554", "url": "https://pubmed.ncbi.nlm.nih.gov/11509554" } ], "uniprot_canonical_ac": "Q94AG2-1" }, { "start_pos": 468, "end_pos": 468, "sequence_org": "T", "sequence_mut": "A", "comment": "Loss of kinase activity. Loss of kinase activity; when associated with A,E-462 and A,E-463.", "evidence": [ { "database": "UniProtKB", "id": "Q94AG2", "url": "https://www.uniprot.org/uniprotkb/Q94AG2" }, { "database": "PubMed", "id": "11509554", "url": "https://pubmed.ncbi.nlm.nih.gov/11509554" } ], "uniprot_canonical_ac": "Q94AG2-1" }, { "start_pos": 468, "end_pos": 468, "sequence_org": "T", "sequence_mut": "E", "comment": "Loss of kinase activity. 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