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A study of Arabidopsis AOX1a transgenic plants.", "journal": "Plant physiology", "date": "2005-12", "authors": "Fiorani Fabio, Umbach Ann L, Siedow James N", "reference": { "type": "PubMed", "id": "16299170", "url": "https://pubmed.ncbi.nlm.nih.gov/16299170" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q39219-1", "protein_name": "Ubiquinol oxidase 1a, mitochondrial", "gene_name": "AOX1A", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39219", "url": "https://www.uniprot.org/uniprotkb/Q39219" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.16299170", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 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antimycin A.", "journal": "Mol. 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Enhanced interaction with SUMO3, and promoted subsequent sumoylation and degradation associated with its localization to nuclear bodies, as well as increased salicylic acid (SA)-dependent interactions with NPR3 and NPR4; when associated with D-11. Blocked SA-dependent interactions with NPR3 and NPR4; when associated with D-11 and D-346.", "evidence": [ { "database": "UniProtKB", "id": "P93002", "url": "https://www.uniprot.org/uniprotkb/P93002" }, { "database": "PubMed", "id": "26269953", "url": "https://pubmed.ncbi.nlm.nih.gov/26269953" } ], "uniprot_canonical_ac": "P93002-1" }, { "start_pos": 346, "end_pos": 346, "sequence_org": "L", "sequence_mut": "D", "comment": "In sim3; impaired interaction with SUMO3, and altered subsequent sumoylation leading to the loss of transcription regulation activity. Reduced salicylic acid (SA)-dependent interactions with NPR3 and NPR4. Present in both nucleus and cytoplasm, but not in nuclear bodies. Reduced salicylic acid (SA)-induced PR1 and PR2 gene expression leading to impaired SA-induced resistance against pathogenic bacteria (e.g. Pseudomonas syringae pv. maculicola ES4326). Impaired ability to bind to TGA3 but enhanced interaction with WRKY70. 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Structural basis of NPR1 in activating plant immunity.", "journal": "Nature", "date": "2022", "authors": "Kumar Shivesh, Zavaliev Raul, Wu Qinglin, Zhou Ye, Cheng Jie, Dillard Lucas, Powers Jordan, Withers John, Zhao Jinshi, Guan Ziqiang, Borgnia Mario J, Bartesaghi Alberto, Dong Xinnian, Zhou Pei", "reference": { "type": "PubMed", "id": "35545668", "url": "https://pubmed.ncbi.nlm.nih.gov/35545668" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q39234-1", "protein_name": "Transcription factor TGA3", "gene_name": "TGA3", "tax_name": "Mouse-ear cress" }, { 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Gen. Genet.", "date": "1996", "authors": "de Pater S, Pham K, Memelink J, Kijne J", "reference": { "type": "PubMed", "id": "8628224", "url": "https://pubmed.ncbi.nlm.nih.gov/8628224" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q39234-1", "protein_name": "Transcription factor TGA3", "gene_name": "TGA3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P43273-1", "protein_name": "Transcription factor TGA2", "gene_name": "TGA2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q39237-1", "protein_name": "Transcription factor TGA1", "gene_name": "TGA1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q39162-1", "protein_name": "Transcription factor TGA4", "gene_name": "TGA4", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39234", "url": "https://www.uniprot.org/uniprotkb/Q39234" } ], "common_name": "Mouse-ear cress", 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"journal": "Plant J.", "date": "1999", "authors": "Samach A, Klenz J E, Kohalmi S E, Risseeuw E, Haughn G W, Crosby W L", "reference": { "type": "PubMed", "id": "10607296", "url": "https://pubmed.ncbi.nlm.nih.gov/10607296" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q39255-1", "protein_name": "SKP1-like protein 1A", "gene_name": "SKP1A", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FHW7-1", "protein_name": "SKP1-like protein 1B", "gene_name": "SKP1B", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q39090-1", "protein_name": "Protein UNUSUAL FLORAL ORGANS", "gene_name": "UFO", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39255", "url": "https://www.uniprot.org/uniprotkb/Q39255" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": 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Gen. Genet.", "date": "2000", "authors": "Schouten J, de Kam R J, Fetter K, Hoge J H", "reference": { "type": "PubMed", "id": "10778750", "url": "https://pubmed.ncbi.nlm.nih.gov/10778750" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q39255-1", "protein_name": "SKP1-like protein 1A", "gene_name": "SKP1A", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FHW7-1", "protein_name": "SKP1-like protein 1B", "gene_name": "SKP1B", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39255", "url": "https://www.uniprot.org/uniprotkb/Q39255" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.10778750", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", 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"count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "EID1, an F-box protein involved in phytochrome A-specific light signaling.", "journal": "Genes Dev.", "date": "2001", "authors": "Dieterle M, Zhou Y C, Sch\u00e4fer E, Funk M, Kretsch T", "reference": { "type": "PubMed", "id": "11316788", "url": "https://pubmed.ncbi.nlm.nih.gov/11316788" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q39255-1", "protein_name": "SKP1-like 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Biol. Chem.", "date": "2002", "authors": "Lechner Esther, Xie Daoxin, Grava Sandrine, Pigaglio Emmanuelle, Planchais Severine, Murray James A H, Parmentier Yves, Mutterer Jerome, Dubreucq Bertrand, Shen Wen-Hui, Genschik Pascal", "reference": { "type": "PubMed", "id": "12381738", "url": "https://pubmed.ncbi.nlm.nih.gov/12381738" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q39255-1", "protein_name": "SKP1-like protein 1A", "gene_name": "SKP1A", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q94AH6-1", "protein_name": "Cullin-1", "gene_name": "CUL1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FHW7-1", "protein_name": "SKP1-like protein 1B", "gene_name": "SKP1B", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q940X7-1", "protein_name": "RING-box protein 1a", "gene_name": "RBX1A; RBX1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9M2B0-1", "protein_name": "RING-box protein 1b", "gene_name": "RBX1B", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39255", "url": "https://www.uniprot.org/uniprotkb/Q39255" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.12381738", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The F-box-containing protein UFO and AGAMOUS participate in antagonistic pathways governing early petal development in Arabidopsis.", "journal": "Proc. Natl. Acad. Sci. U.S.A.", "date": "2003", "authors": "Durfee Tim, Roe Judith L, Sessions R Allen, Inouye Carla, Serikawa Kyle, Feldmann Kenneth A, Weigel Detlef, Zambryski Patricia C", "reference": { "type": "PubMed", "id": "12826617", "url": "https://pubmed.ncbi.nlm.nih.gov/12826617" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q39255-1", "protein_name": "SKP1-like protein 1A", "gene_name": "SKP1A", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q39090-1", "protein_name": "Protein UNUSUAL FLORAL ORGANS", "gene_name": "UFO", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39255", "url": "https://www.uniprot.org/uniprotkb/Q39255" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.12826617", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The F box protein AFR is a positive regulator of phytochrome A-mediated light signaling.", "journal": "Curr. Biol.", "date": "2003", "authors": "Harmon Frank G, Kay Steve A", "reference": { "type": "PubMed", "id": "14653999", "url": "https://pubmed.ncbi.nlm.nih.gov/14653999" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q39255-1", "protein_name": "SKP1-like protein 1A", "gene_name": "SKP1A", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8LAW2-1", "protein_name": "F-box protein AFR", "gene_name": "AFR", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39255", "url": "https://www.uniprot.org/uniprotkb/Q39255" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.14653999", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": 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"gene_name": "SKP1A", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39255", "url": "https://www.uniprot.org/uniprotkb/Q39255" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.14675532", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": 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"count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The ASK1 and ASK2 genes are essential for Arabidopsis early development.", "journal": "The Plant cell", "date": "2004-01", "authors": "Liu Fuquan, Ni Weimin, Griffith Megan E, Huang Zhiyuan, Chang Changqing, Peng Wen, Ma Hong, Xie Daoxin", "reference": { "type": "PubMed", "id": "14688296", "url": "https://pubmed.ncbi.nlm.nih.gov/14688296" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q39255-1", "protein_name": "SKP1-like protein 1A", "gene_name": "SKP1A", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FHW7-1", "protein_name": "SKP1-like protein 1B", "gene_name": "SKP1B", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39255", "url": "https://www.uniprot.org/uniprotkb/Q39255" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.14688296", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": 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[] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Identification of ASK and clock-associated proteins as molecular partners of LKP2 (LOV kelch protein 2) in Arabidopsis.", "journal": "J. Exp. Bot.", "date": "2004", "authors": "Yasuhara Masahiro, Mitsui Shunya, Hirano Hiroshi, Takanabe Rieko, Tokioka Yoko, Ihara Norihisa, Komatsu Akihiro, Seki Motoaki, Shinozaki Kazuo, Kiyosue Tomohiro", "reference": { "type": "PubMed", "id": "15310821", "url": "https://pubmed.ncbi.nlm.nih.gov/15310821" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q39255-1", "protein_name": "SKP1-like protein 1A", "gene_name": "SKP1A", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FHW7-1", "protein_name": "SKP1-like protein 1B", "gene_name": "SKP1B", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8W420-1", "protein_name": "Adagio protein 2", "gene_name": "ADO2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q94BT6-1", "protein_name": "Adagio protein 1", "gene_name": "ADO1; ZTL", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9C9W9-1", "protein_name": "Adagio protein 3", "gene_name": "ADO3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q6LA42-1", "protein_name": "Two-component response regulator-like APRR5", "gene_name": "APRR5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LKL2-1", "protein_name": "Two-component response regulator-like APRR1", "gene_name": "APRR1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39255", "url": "https://www.uniprot.org/uniprotkb/Q39255" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.15310821", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", 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"count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Formation of an SCF(ZTL) complex is required for proper regulation of circadian timing.", "journal": "Plant J.", "date": "2004", "authors": "Han Linqu, Mason Mary, Risseeuw Eddy P, Crosby William L, Somers David E", "reference": { "type": "PubMed", "id": "15447654", "url": "https://pubmed.ncbi.nlm.nih.gov/15447654" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q39255-1", "protein_name": "SKP1-like protein 1A", "gene_name": "SKP1A", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FHW7-1", "protein_name": "SKP1-like protein 1B", "gene_name": "SKP1B", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q94BT6-1", "protein_name": "Adagio protein 1", "gene_name": "ADO1; ZTL", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39255", "url": "https://www.uniprot.org/uniprotkb/Q39255" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "mutagenesis": [ { "start_pos": 200, "end_pos": 200, "sequence_org": "L", "sequence_mut": "A", "comment": "No SCF(ADO1) complex formation and reduced cyclic degradation of ADO1, but no effect on binding to GI; when associated with A-213.", "evidence": [ { "database": "UniProtKB", "id": "Q94BT6", "url": "https://www.uniprot.org/uniprotkb/Q94BT6" }, { "database": "PubMed", "id": "15447654", "url": "https://pubmed.ncbi.nlm.nih.gov/15447654" }, { "database": "PubMed", "id": "17704763", "url": "https://pubmed.ncbi.nlm.nih.gov/17704763" } ], "uniprot_canonical_ac": "Q94BT6-1" }, { "start_pos": 213, "end_pos": 213, "sequence_org": "L", "sequence_mut": "A", "comment": "No SCF(ADO1) complex formation and reduced cyclic degradation of ADO1, but no effect on binding to GI; when associated with A-200.", "evidence": [ { "database": "UniProtKB", "id": "Q94BT6", "url": "https://www.uniprot.org/uniprotkb/Q94BT6" }, { "database": "PubMed", "id": "15447654", "url": "https://pubmed.ncbi.nlm.nih.gov/15447654" }, { "database": "PubMed", "id": "17704763", "url": "https://pubmed.ncbi.nlm.nih.gov/17704763" } ], "uniprot_canonical_ac": "Q94BT6-1" } ], "record_id": "pubmed.15447654", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": 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"count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "F-box-like domain in the polerovirus protein P0 is required for silencing suppressor function.", "journal": "Proc. Natl. Acad. Sci. U.S.A.", "date": "2006", "authors": "Pazhouhandeh Maghsoud, Dieterle Monika, Marrocco Katia, Lechner Esther, Berry Bassam, Brault V\u00e9ronique, Hemmer Odile, Kretsch Thomas, Richards Kenneth E, Genschik Pascal, Ziegler-Graff V\u00e9ronique", "reference": { "type": "PubMed", "id": "16446454", "url": "https://pubmed.ncbi.nlm.nih.gov/16446454" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q39255-1", "protein_name": "SKP1-like protein 1A", "gene_name": "SKP1A", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FHW7-1", "protein_name": "SKP1-like protein 1B", "gene_name": "SKP1B", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39255", "url": "https://www.uniprot.org/uniprotkb/Q39255" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.16446454", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": 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"n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Mechanism of auxin perception by the TIR1 ubiquitin ligase.", "journal": "Nature", "date": "2007", "authors": "Tan Xu, Calderon-Villalobos Luz Irina A, Sharon Michal, Zheng Changxue, Robinson Carol V, Estelle Mark, Zheng Ning", "reference": { "type": "PubMed", "id": "17410169", "url": "https://pubmed.ncbi.nlm.nih.gov/17410169" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q39255-1", "protein_name": "SKP1-like protein 1A", "gene_name": "SKP1A", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q570C0-1", "protein_name": "Protein TRANSPORT INHIBITOR RESPONSE 1", "gene_name": "TIR1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39255", "url": "https://www.uniprot.org/uniprotkb/Q39255" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.17410169", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ 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"count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "SKP2A, an F-box protein that regulates cell division, is degraded via the ubiquitin pathway.", "journal": "Plant J.", "date": "2008", "authors": "Jurado Silvia, D\u00edaz-Trivi\u00f1o Sara, Abraham Zamira, Manzano Concepci\u00f3n, Gutierrez Crisanto, del Pozo Carlos", "reference": { "type": "PubMed", "id": "18036202", "url": "https://pubmed.ncbi.nlm.nih.gov/18036202" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q39255-1", "protein_name": "SKP1-like protein 1A", "gene_name": "SKP1A", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FHW7-1", "protein_name": "SKP1-like protein 1B", "gene_name": "SKP1B", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SY65-1", "protein_name": "SKP1-like protein 18", "gene_name": "ASK18", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LPL4-1", "protein_name": "F-box protein SKP2A", "gene_name": "SKP2A", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39255", "url": "https://www.uniprot.org/uniprotkb/Q39255" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.18036202", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Small-molecule agonists and antagonists of F-box protein-substrate interactions in auxin perception and signaling.", "journal": "Proc. Natl. Acad. Sci. U.S.A.", "date": "2008", "authors": "Hayashi Ken-Ichiro, Tan Xu, Zheng Ning, Hatate Tatsuya, Kimura Yoshio, Kepinski Stefan, Nozaki Hiroshi", "reference": { "type": "PubMed", "id": "18391211", "url": "https://pubmed.ncbi.nlm.nih.gov/18391211" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q39255-1", "protein_name": "SKP1-like protein 1A", "gene_name": "SKP1A", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q570C0-1", "protein_name": "Protein TRANSPORT INHIBITOR RESPONSE 1", "gene_name": "TIR1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39255", "url": "https://www.uniprot.org/uniprotkb/Q39255" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.18391211", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": 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"n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "F-box protein DOR functions as a novel inhibitory factor for abscisic acid-induced stomatal closure under drought stress in Arabidopsis.", "journal": "Plant Physiol.", "date": "2008", "authors": "Zhang Yu'e, Xu Wenying, Li Zhonghui, Deng Xing Wang, Wu Weihua, Xue Yongbiao", "reference": { "type": "PubMed", "id": "18835996", "url": "https://pubmed.ncbi.nlm.nih.gov/18835996" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q39255-1", "protein_name": "SKP1-like protein 1A", "gene_name": "SKP1A", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q94AH6-1", "protein_name": "Cullin-1", "gene_name": "CUL1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q5BPS3-1", "protein_name": "F-box protein DOR", "gene_name": "DOR", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39255", "url": "https://www.uniprot.org/uniprotkb/Q39255" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.18835996", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Control of plant germline proliferation by SCF(FBL17) degradation of cell cycle inhibitors.", "journal": "Nature", "date": "2008", "authors": "Kim Hyo Jung, Oh Sung Aeong, Brownfield Lynette, Hong Sung Hyun, Ryu Hojin, Hwang Ildoo, Twell David, Nam Hong Gil", "reference": { "type": "PubMed", "id": "18948957", "url": "https://pubmed.ncbi.nlm.nih.gov/18948957" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q39255-1", "protein_name": "SKP1-like protein 1A", "gene_name": "SKP1A", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q0WNX9-1", "protein_name": "Cyclin-dependent kinase inhibitor 6", "gene_name": "KRP6", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q94CL9-1", "protein_name": "Cyclin-dependent kinase inhibitor 7", "gene_name": "ICK5; KRP7", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8GYJ3-1", "protein_name": "Cyclin-dependent kinase inhibitor 4", "gene_name": "KRP4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8W104-1", "protein_name": "F-box/LRR-repeat protein 17", "gene_name": "FBL17", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39255", "url": "https://www.uniprot.org/uniprotkb/Q39255" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.18948957", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Agrobacterium induces expression of a host F-box protein required for tumorigenicity.", "journal": "Cell Host Microbe", "date": "2010", "authors": "Zaltsman Adi, Krichevsky Alexander, Loyter Abraham, Citovsky Vitaly", "reference": { "type": "PubMed", "id": "20227663", "url": "https://pubmed.ncbi.nlm.nih.gov/20227663" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q39255-1", "protein_name": "SKP1-like protein 1A", "gene_name": "SKP1A", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9MA75-1", "protein_name": "Transcription factor VIP1", "gene_name": "VIP1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9C7K0-1", "protein_name": "F-box protein VBF", "gene_name": "VBF", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39255", "url": "https://www.uniprot.org/uniprotkb/Q39255" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.20227663", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Arabidopsis TRANSCURVATA1 encodes NUP58, a component of the nucleopore central channel.", "journal": "PLoS ONE", "date": "2013", "authors": "Ferr\u00e1ndez-Ayela Almudena, Alonso-Peral Mar\u00eda Magdalena, S\u00e1nchez-Garc\u00eda Ana Bel\u00e9n, Micol-Ponce Rosa, P\u00e9rez-P\u00e9rez Jos\u00e9 Manuel, Micol Jos\u00e9 Luis, Ponce Mar\u00eda Rosa", "reference": { "type": "PubMed", "id": "23840761", "url": "https://pubmed.ncbi.nlm.nih.gov/23840761" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q39255-1", "protein_name": "SKP1-like protein 1A", "gene_name": "SKP1A", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FHW7-1", "protein_name": "SKP1-like protein 1B", "gene_name": "SKP1B", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LQT8-1", "protein_name": "DELLA protein GAI", "gene_name": "GAI", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8L7F7-1", "protein_name": "Nuclear pore complex protein NUP62", "gene_name": "NUP62", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8RWH9-1", "protein_name": "Nuclear pore complex protein NUP58", "gene_name": "NUP58", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39255", "url": "https://www.uniprot.org/uniprotkb/Q39255" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.23840761", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", 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"o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Budding yeast SKP1 encodes an evolutionarily conserved kinetochore protein required for cell cycle progression.", "journal": "Cell", "date": "1996", "authors": "Connelly C, Hieter P", "reference": { "type": "PubMed", "id": "8706132", "url": "https://pubmed.ncbi.nlm.nih.gov/8706132" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q39255-1", "protein_name": "SKP1-like protein 1A", "gene_name": "SKP1A", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P52286-1", "protein_name": "Suppressor of kinetochore protein 1", "gene_name": "SKP1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39255", "url": "https://www.uniprot.org/uniprotkb/Q39255" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.8706132", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", 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"n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Arabidopsis SKP1, a homologue of a cell cycle regulator gene, is predominantly expressed in meristematic cells.", "journal": "Planta", "date": "1998", "authors": "Porat R, Lu P, O'Neill S D", "reference": { "type": "PubMed", "id": "9530878", "url": "https://pubmed.ncbi.nlm.nih.gov/9530878" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q39255-1", "protein_name": "SKP1-like protein 1A", "gene_name": "SKP1A", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q39255", "url": "https://www.uniprot.org/uniprotkb/Q39255" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.9530878", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": 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"count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Regulation and function of Arabidopsis JASMONATE ZIM-domain genes in response to wounding and herbivory.", "journal": "Plant Physiol.", "date": "2008", "authors": "Chung Hoo Sun, Koo Abraham J K, Gao Xiaoli, Jayanty Sastry, Thines Bryan, Jones A Daniel, Howe Gregg A", "reference": { "type": "PubMed", "id": "18223147", "url": "https://pubmed.ncbi.nlm.nih.gov/18223147" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9LMA8-1", "protein_name": "Protein TIFY 10A", "gene_name": "JAZ1; TIFY10A", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O64687-1", "protein_name": "Protein TIFY 5B", "gene_name": "TIFY 5B", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q93ZM9-1", "protein_name": "Protein TIFY 9", "gene_name": "JAZ10; TIFY9", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LDU5-1", "protein_name": "Protein TIFY 11A", "gene_name": "JAZ5; TIFY11A", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9C9E3-1", "protein_name": "Protein TIFY 11B", "gene_name": "JAZ6; TIFY11B", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9S7M2-1", "protein_name": "Protein TIFY 10B", "gene_name": "TIFY10B", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8LBM2-1", "protein_name": "Protein TIFY 5A", "gene_name": "TIFY5A", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9C5K8-1", "protein_name": "Protein TIFY 3B", "gene_name": "TIFY3B", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q58G47-1", "protein_name": "Protein TIFY 6A", "gene_name": "JAZ4; TIFY6A", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9M246-1", "protein_name": "Protein TIFY 3A", "gene_name": "JAZ11; TIFY3A", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8W4J8-1", "protein_name": "Protein TIFY 7", "gene_name": "TIFY7", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LVI4-1", "protein_name": "Protein TIFY 6B", "gene_name": "JAZ3; TIFY6B", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LMA8", "url": "https://www.uniprot.org/uniprotkb/Q9LMA8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.18223147", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 12 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A critical role of two positively charged amino acids in the Jas motif of Arabidopsis JAZ proteins in mediating coronatine- and jasmonoyl isoleucine-dependent interactions with the COI1 F-box protein.", "journal": "The Plant journal : for cell and molecular biology", "date": "2008-09", "authors": "Melotto Maeli, Mecey Christy, Niu Yajie, Chung Hoo Sun, Katsir Leron, Yao Jian, Zeng Weiqing, Thines Bryan, Staswick Paul, Browse John, Howe Gregg A, He Sheng Yang", "reference": { "type": "PubMed", "id": "18547396", "url": "https://pubmed.ncbi.nlm.nih.gov/18547396" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9LMA8-1", "protein_name": "Protein TIFY 10A", "gene_name": "JAZ1; TIFY10A", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9S7M2-1", "protein_name": "Protein TIFY 10B", "gene_name": "TIFY10B", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8W4J8-1", "protein_name": "Protein TIFY 7", "gene_name": "TIFY7", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LVI4-1", "protein_name": "Protein TIFY 6B", "gene_name": "JAZ3; TIFY6B", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LMA8", "url": "https://www.uniprot.org/uniprotkb/Q9LMA8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "mutagenesis": [ { "start_pos": 205, "end_pos": 206, "sequence_org": "RR", "sequence_mut": "AA", "comment": "Loss of binding to COI1 and jasmonate insensitivity. No effect on MYC2 binding. Partial loss of interaction with CCMVORF2b protein.", "evidence": [ { "database": "UniProtKB", "id": "Q9LMA8", "url": "https://www.uniprot.org/uniprotkb/Q9LMA8" }, { "database": "PubMed", "id": "28059067", "url": "https://pubmed.ncbi.nlm.nih.gov/28059067" }, { "database": "PubMed", "id": "18547396", "url": "https://pubmed.ncbi.nlm.nih.gov/18547396" } ], "uniprot_canonical_ac": "Q9LMA8-1" }, { "start_pos": 223, "end_pos": 224, "sequence_org": "RK", "sequence_mut": "AA", "comment": "Loss of interaction with COI1 and resistant to coronatine-mediated degradation. No effect on MYC2 binding and nuclear localization.", "evidence": [ { "database": "UniProtKB", "id": "Q8W4J8", "url": "https://www.uniprot.org/uniprotkb/Q8W4J8" }, { "database": "PubMed", "id": "23169619", "url": "https://pubmed.ncbi.nlm.nih.gov/23169619" }, { "database": "PubMed", "id": "18547396", "url": "https://pubmed.ncbi.nlm.nih.gov/18547396" } ], "uniprot_canonical_ac": "Q8W4J8-1" } ], "record_id": "pubmed.18547396", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A critical role for the TIFY motif in repression of jasmonate signaling by a stabilized splice variant of the JASMONATE ZIM-domain protein JAZ10 in Arabidopsis.", "journal": "The Plant cell", "date": "2009-01", "authors": "Chung Hoo Sun, Howe Gregg A", "reference": { "type": "PubMed", "id": "19151223", "url": "https://pubmed.ncbi.nlm.nih.gov/19151223" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9LMA8-1", "protein_name": "Protein TIFY 10A", "gene_name": "JAZ1; TIFY10A", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q93ZM9-1", "protein_name": "Protein TIFY 9", "gene_name": "JAZ10; TIFY9", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LDU5-1", "protein_name": "Protein TIFY 11A", "gene_name": "JAZ5; TIFY11A", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9C9E3-1", "protein_name": "Protein TIFY 11B", "gene_name": "JAZ6; TIFY11B", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9S7M2-1", "protein_name": "Protein TIFY 10B", "gene_name": "TIFY10B", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8LBM2-1", "protein_name": "Protein TIFY 5A", "gene_name": "TIFY5A", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9C5K8-1", "protein_name": "Protein TIFY 3B", "gene_name": "TIFY3B", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q58G47-1", "protein_name": "Protein TIFY 6A", "gene_name": "JAZ4; TIFY6A", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9M246-1", "protein_name": "Protein TIFY 3A", "gene_name": "JAZ11; TIFY3A", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8W4J8-1", "protein_name": "Protein TIFY 7", "gene_name": "TIFY7", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LVI4-1", "protein_name": "Protein TIFY 6B", "gene_name": "JAZ3; TIFY6B", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LMA8", "url": "https://www.uniprot.org/uniprotkb/Q9LMA8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "mutagenesis": [ { "start_pos": 106, "end_pos": 106, "sequence_org": "T", "sequence_mut": "A", "comment": "No effect on dimerization and interactions with TIFY11B/JAZ6 and AFPH2/NINJA.", "evidence": [ { "database": "UniProtKB", "id": "Q93ZM9", "url": "https://www.uniprot.org/uniprotkb/Q93ZM9" }, { "database": "PubMed", "id": "23632853", "url": "https://pubmed.ncbi.nlm.nih.gov/23632853" }, { "database": "PubMed", "id": "19151223", "url": "https://pubmed.ncbi.nlm.nih.gov/19151223" } ], "uniprot_canonical_ac": "Q93ZM9-1" }, { "start_pos": 107, "end_pos": 107, "sequence_org": "I", "sequence_mut": "A", "comment": "Loss of dimerization, loss of interaction with TIFY11B/JAZ6 and strongly decreased interaction with AFPH2/NINJA.", "evidence": [ { "database": "UniProtKB", "id": "Q93ZM9", "url": "https://www.uniprot.org/uniprotkb/Q93ZM9" }, { "database": "PubMed", "id": "23632853", "url": "https://pubmed.ncbi.nlm.nih.gov/23632853" }, { "database": "PubMed", "id": "19151223", "url": "https://pubmed.ncbi.nlm.nih.gov/19151223" } ], "uniprot_canonical_ac": "Q93ZM9-1" }, { "start_pos": 108, "end_pos": 108, "sequence_org": "F", "sequence_mut": "A", "comment": "No effect on dimerization and interaction with TIFY11B/JAZ6.", "evidence": [ { "database": "UniProtKB", "id": "Q93ZM9", "url": "https://www.uniprot.org/uniprotkb/Q93ZM9" }, { "database": "PubMed", "id": "19151223", "url": "https://pubmed.ncbi.nlm.nih.gov/19151223" } ], "uniprot_canonical_ac": "Q93ZM9-1" }, { "start_pos": 109, "end_pos": 109, "sequence_org": "Y", "sequence_mut": "A", "comment": "No effect on dimerization and interaction with TIFY11B/JAZ6.", "evidence": [ { "database": "UniProtKB", "id": "Q93ZM9", "url": "https://www.uniprot.org/uniprotkb/Q93ZM9" }, { "database": "PubMed", "id": "19151223", "url": "https://pubmed.ncbi.nlm.nih.gov/19151223" } ], "uniprot_canonical_ac": "Q93ZM9-1" }, { "start_pos": 111, "end_pos": 111, "sequence_org": "G", "sequence_mut": "A", "comment": "Loss of dimerization and loss of interaction with TIFY11B/JAZ6.", "evidence": [ { "database": "UniProtKB", "id": "Q93ZM9", "url": "https://www.uniprot.org/uniprotkb/Q93ZM9" }, { "database": "PubMed", "id": "19151223", "url": "https://pubmed.ncbi.nlm.nih.gov/19151223" } ], "uniprot_canonical_ac": "Q93ZM9-1" }, { "start_pos": 180, "end_pos": 180, "sequence_org": "T", "sequence_mut": "A", "comment": "No effect on dimerization.", "evidence": [ { "database": "UniProtKB", "id": "Q9LVI4", "url": "https://www.uniprot.org/uniprotkb/Q9LVI4" }, { "database": "PubMed", "id": "19151223", "url": "https://pubmed.ncbi.nlm.nih.gov/19151223" } ], "uniprot_canonical_ac": "Q9LVI4-1" }, { "start_pos": 181, "end_pos": 181, "sequence_org": "I", "sequence_mut": "A", "comment": "No effect on dimerization, but loss of interaction with TIFY9/JAZ10.", "evidence": [ { "database": "UniProtKB", "id": "Q9LVI4", "url": "https://www.uniprot.org/uniprotkb/Q9LVI4" }, { "database": "PubMed", "id": "19151223", "url": "https://pubmed.ncbi.nlm.nih.gov/19151223" } ], "uniprot_canonical_ac": "Q9LVI4-1" }, { "start_pos": 182, "end_pos": 182, "sequence_org": "F", "sequence_mut": "A", "comment": "No effect on dimerization.", "evidence": [ { "database": "UniProtKB", "id": "Q9LVI4", "url": "https://www.uniprot.org/uniprotkb/Q9LVI4" }, { "database": "PubMed", "id": "19151223", "url": "https://pubmed.ncbi.nlm.nih.gov/19151223" } ], "uniprot_canonical_ac": "Q9LVI4-1" }, { "start_pos": 183, "end_pos": 183, "sequence_org": "Y", "sequence_mut": "A", "comment": "No effect on dimerization.", "evidence": [ { "database": "UniProtKB", "id": "Q9LVI4", "url": "https://www.uniprot.org/uniprotkb/Q9LVI4" }, { "database": "PubMed", "id": "19151223", "url": "https://pubmed.ncbi.nlm.nih.gov/19151223" } ], "uniprot_canonical_ac": "Q9LVI4-1" }, { "start_pos": 185, "end_pos": 185, "sequence_org": "G", "sequence_mut": "A", "comment": "Loss of dimerization and loss of interaction with TIFY9/JAZ10.", "evidence": [ { "database": "UniProtKB", "id": "Q9LVI4", "url": "https://www.uniprot.org/uniprotkb/Q9LVI4" }, { "database": "PubMed", "id": "19151223", "url": "https://pubmed.ncbi.nlm.nih.gov/19151223" } ], "uniprot_canonical_ac": "Q9LVI4-1" } ], "record_id": "pubmed.19151223", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 11 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The ZIM domain mediates homo- and heteromeric interactions between Arabidopsis JAZ proteins.", "journal": "Plant J.", "date": "2009", "authors": "Chini Andrea, Fonseca Sandra, Chico Jose M, Fern\u00e1ndez-Calvo Patricia, Solano Roberto", "reference": { "type": "PubMed", "id": "19309455", "url": "https://pubmed.ncbi.nlm.nih.gov/19309455" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9LMA8-1", "protein_name": "Protein TIFY 10A", "gene_name": "JAZ1; TIFY10A", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q93ZM9-1", "protein_name": "Protein TIFY 9", "gene_name": "JAZ10; TIFY9", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LDU5-1", "protein_name": "Protein TIFY 11A", "gene_name": "JAZ5; TIFY11A", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9C9E3-1", "protein_name": "Protein TIFY 11B", "gene_name": "JAZ6; TIFY11B", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9S7M2-1", "protein_name": "Protein TIFY 10B", "gene_name": "TIFY10B", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8LBM2-1", "protein_name": "Protein TIFY 5A", "gene_name": "TIFY5A", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9C5K8-1", "protein_name": "Protein TIFY 3B", "gene_name": "TIFY3B", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q39204-1", "protein_name": "Transcription factor MYC2", "gene_name": "MYC2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q58G47-1", "protein_name": "Protein TIFY 6A", "gene_name": "JAZ4; TIFY6A", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9M246-1", "protein_name": "Protein TIFY 3A", "gene_name": "JAZ11; TIFY3A", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8W4J8-1", "protein_name": "Protein TIFY 7", "gene_name": "TIFY7", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LVI4-1", "protein_name": "Protein TIFY 6B", "gene_name": "JAZ3; TIFY6B", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LMA8", "url": "https://www.uniprot.org/uniprotkb/Q9LMA8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.19309455", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 12 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", 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}, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "NINJA connects the co-repressor TOPLESS to jasmonate signalling.", "journal": "Nature", "date": "2010", "authors": "Pauwels Laurens, Barbero Gemma Fern\u00e1ndez, Geerinck Jan, Tilleman Sofie, Grunewald Wim, P\u00e9rez Amparo Cu\u00e9llar, Chico Jos\u00e9 Manuel, Bossche Robin Vanden, Sewell Jared, Gil Eduardo, Garc\u00eda-Casado Gloria, Witters Erwin, Inz\u00e9 Dirk, Long Jeff A, De Jaeger Geert, Solano Roberto, Goossens Alain", "reference": { "type": "PubMed", "id": "20360743", "url": "https://pubmed.ncbi.nlm.nih.gov/20360743" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9LMA8-1", "protein_name": "Protein TIFY 10A", "gene_name": "JAZ1; TIFY10A", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q94AI7-1", "protein_name": "Protein TOPLESS", "gene_name": "TPL", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SV55-1", "protein_name": "AFP homolog 2", "gene_name": "AFPH2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q84JM4-1", "protein_name": "Topless-related protein 3", "gene_name": "TPR3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q7XA73-1", "protein_name": "Protein TIFY 4A", "gene_name": "PPD1; TIFY4A", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FIP9-1", "protein_name": "Transcription factor MYC3", "gene_name": "MYC3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q93ZM9-1", "protein_name": "Protein TIFY 9", "gene_name": "JAZ10; TIFY9", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LDU5-1", "protein_name": "Protein TIFY 11A", "gene_name": "JAZ5; TIFY11A", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9C9E3-1", "protein_name": "Protein TIFY 11B", "gene_name": "JAZ6; TIFY11B", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9S7M2-1", "protein_name": "Protein TIFY 10B", "gene_name": "TIFY10B", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9C5K8-1", "protein_name": "Protein TIFY 3B", "gene_name": "TIFY3B", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LRZ0-1", "protein_name": "Topless-related protein 2", "gene_name": "TPR2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q58G47-1", "protein_name": "Protein TIFY 6A", "gene_name": "JAZ4; TIFY6A", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9M246-1", "protein_name": "Protein TIFY 3A", "gene_name": "JAZ11; TIFY3A", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q84MB2-1", "protein_name": "Protein TIFY 8", "gene_name": "TIFY8", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8W4J8-1", "protein_name": "Protein TIFY 7", "gene_name": "TIFY7", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8GY55-1", "protein_name": "Protein TIFY 4B", "gene_name": "PPD2; TIFY4B", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LVI4-1", "protein_name": "Protein TIFY 6B", "gene_name": "JAZ3; TIFY6B", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LMA8", "url": "https://www.uniprot.org/uniprotkb/Q9LMA8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "mutagenesis": [ { "start_pos": 11, "end_pos": 11, "sequence_org": "L", "sequence_mut": "A", "comment": "Loss of interaction with TOPLESS, but no effect on the interaction with TIFY10A/JAZ1; when associated with A-9 and A-13.", "evidence": [ { "database": "UniProtKB", "id": "Q9SV55", "url": "https://www.uniprot.org/uniprotkb/Q9SV55" }, { "database": "PubMed", "id": "20360743", "url": "https://pubmed.ncbi.nlm.nih.gov/20360743" } ], "uniprot_canonical_ac": "Q9SV55-1" }, { "start_pos": 13, "end_pos": 13, "sequence_org": "L", "sequence_mut": "A", "comment": "Loss of interaction with TOPLESS, but no effect on the interaction with TIFY10A/JAZ1; when associated with A-9 and A-11.", "evidence": [ { "database": "UniProtKB", "id": "Q9SV55", "url": "https://www.uniprot.org/uniprotkb/Q9SV55" }, { "database": "PubMed", "id": "20360743", "url": "https://pubmed.ncbi.nlm.nih.gov/20360743" } ], "uniprot_canonical_ac": "Q9SV55-1" }, { "start_pos": 9, "end_pos": 9, "sequence_org": "L", "sequence_mut": "A", "comment": "Loss of interaction with TOPLESS, but no effect on the interaction with TIFY10A/JAZ1; when associated with A-11 and A-13.", "evidence": [ { "database": "UniProtKB", "id": "Q9SV55", "url": "https://www.uniprot.org/uniprotkb/Q9SV55" }, { "database": "PubMed", "id": "20360743", "url": "https://pubmed.ncbi.nlm.nih.gov/20360743" } ], "uniprot_canonical_ac": "Q9SV55-1" } ], "record_id": "pubmed.20360743", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 18 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Characterization of JAZ-interacting bHLH transcription factors that regulate jasmonate responses in Arabidopsis.", "journal": "J. Exp. Bot.", "date": "2011", "authors": "Niu Yajie, Figueroa Pablo, Browse John", "reference": { "type": "PubMed", "id": "21321051", "url": "https://pubmed.ncbi.nlm.nih.gov/21321051" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9LMA8-1", "protein_name": "Protein TIFY 10A", "gene_name": "JAZ1; TIFY10A", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FIP9-1", "protein_name": "Transcription factor MYC3", "gene_name": "MYC3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O49687-1", "protein_name": "Transcription factor MYC4", "gene_name": "MYC4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q39204-1", "protein_name": "Transcription factor MYC2", "gene_name": "MYC2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8W4J8-1", "protein_name": "Protein TIFY 7", "gene_name": "TIFY7", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LVI4-1", "protein_name": "Protein TIFY 6B", "gene_name": "JAZ3; TIFY6B", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9LMA8", "url": "https://www.uniprot.org/uniprotkb/Q9LMA8" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.21321051", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The Jasmonate-ZIM domain proteins interact with the R2R3-MYB transcription factors MYB21 and MYB24 to affect Jasmonate-regulated stamen development in Arabidopsis.", "journal": "Plant Cell", "date": "2011", "authors": "Song Susheng, Qi Tiancong, Huang Huang, Ren Qingcuo, Wu Dewei, Chang Changqing, Peng Wen, Liu Yule, Peng Jinrong, Xie Daoxin", "reference": { "type": "PubMed", "id": "21447791", "url": "https://pubmed.ncbi.nlm.nih.gov/21447791" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9LMA8-1", "protein_name": "Protein TIFY 10A", "gene_name": "JAZ1; 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], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Characterization of the alpha-tubulin gene family of Arabidopsis thaliana.", "journal": "Proc. Natl. Acad. Sci. U.S.A.", "date": "1987", "authors": "Ludwig S R, Oppenheimer D G, Silflow C D, Snustad D P", "reference": { "type": "PubMed", "id": "3475704", "url": "https://pubmed.ncbi.nlm.nih.gov/3475704" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q56WH1-1", "protein_name": "Tubulin alpha-3 chain", "gene_name": "TUBA3", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q56WH1", "url": "https://www.uniprot.org/uniprotkb/Q56WH1" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.3475704", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Analysis of a sugar response mutant of Arabidopsis identified a novel B3 domain protein that functions as an active transcriptional repressor.", "journal": "Plant Physiol.", "date": "2005", "authors": "Tsukagoshi Hironaka, Saijo Takanori, Shibata Daisuke, Morikami Atsushi, Nakamura Kenzo", "reference": { "type": "PubMed", "id": "15894743", "url": "https://pubmed.ncbi.nlm.nih.gov/15894743" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q5CCK4-1", "protein_name": "B3 domain-containing transcription 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"count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Repression of the LEAFY COTYLEDON 1/B3 regulatory network in plant embryo development by VP1/ABSCISIC ACID INSENSITIVE 3-LIKE B3 genes.", "journal": "Plant physiology", "date": "2007-02", "authors": "Suzuki Masaharu, Wang Heidi H-Y, McCarty Donald R", "reference": { "type": "PubMed", "id": "17158584", "url": "https://pubmed.ncbi.nlm.nih.gov/17158584" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q5CCK4-1", "protein_name": "B3 domain-containing transcription repressor VAL2", "gene_name": "VAL2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O65420-1", "protein_name": "B3 domain-containing transcription factor VAL3", 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