[ { "title": "R-spondin-1 induces Axin degradation via the LRP6-CK1\u03b5 axis.", "journal": "Cell communication and signaling : CCS", "date": "2024-01-05", "authors": "Tan Lifeng, Yan Mengfang, Su Zijie, Wang Hanbin, Li Huan, Zhao Xibao, Liu Shanshan, Zhang Long, Sun Qi, Lu Desheng", "reference": { "type": "PubMed", "id": "38183076", "url": "https://pubmed.ncbi.nlm.nih.gov/38183076" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q2MKA7-1", "protein_name": "R-spondin-1", "gene_name": "RSPO1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q2MKA7", "url": "https://www.uniprot.org/uniprotkb/Q2MKA7" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.38183076", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Rasl11a, member of a novel small monomeric GTPase gene family, is differentially expressed in prostate tumors.", "journal": "Biochem. Biophys. Res. Commun.", "date": "2004", "authors": "Louro R, Nakaya HI, Paquola AC, Martins EA, da Silva AM, Verjovski-Almeida S, Reis EM", "reference": { "type": "PubMed", "id": "15033445", "url": "https://pubmed.ncbi.nlm.nih.gov/15033445" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q6T310-1", "protein_name": "Ras-like protein family member 11A", "gene_name": "RASL11A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N8L6-1", "protein_name": "ADP-ribosylation factor-like protein 10", "gene_name": "ARL10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6T311-1", "protein_name": "ADP-ribosylation factor-like protein 9", "gene_name": "ARL9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6IMB1-1", "protein_name": "Ras-like protein family member 11A", "gene_name": "Rasl11a", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q922H7-1", "protein_name": "Ras-like protein family member 11B", "gene_name": "Rasl11b", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q6IMA7-1", "protein_name": "Ras-like protein family member 11B", "gene_name": "Rasl11b", "tax_name": "Rat" }, { "uniprot_canonical_ac": "Q9BPW5-1", "protein_name": "Ras-like protein family member 11B", "gene_name": "RASL11B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6IMA3-1", "protein_name": "Ras-like protein family member 11A", "gene_name": "Rasl11a", "tax_name": "Rat" }, { "uniprot_canonical_ac": "Q9QXJ4-1", "protein_name": "ADP-ribosylation factor-like protein 10", "gene_name": "Arl10", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q6P0U3-1", "protein_name": "Ras-like protein family member 11B", "gene_name": "rasl11b", "tax_name": "Zebrafish" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q6T310", "url": "https://www.uniprot.org/uniprotkb/Q6T310" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.15033445", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 10 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Cloning, genomic organization, and tissue-specific expression of the RASL11B gene.", "journal": "Biochim. 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Acta", "date": "2007", "authors": "Stolle K, Schnoor M, Fuellen G, Spitzer M, Cullen P, Lorkowski S", "reference": { "type": "PubMed", "id": "17628721", "url": "https://pubmed.ncbi.nlm.nih.gov/17628721" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q6T310-1", "protein_name": "Ras-like protein family member 11A", "gene_name": "RASL11A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BPW5-1", "protein_name": "Ras-like protein family member 11B", "gene_name": "RASL11B", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q6T310", "url": "https://www.uniprot.org/uniprotkb/Q6T310" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.17628721", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", 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"tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2R0-1", "protein_name": "Cytochrome c oxidase assembly factor 3 homolog, mitochondrial", "gene_name": "COA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75880-1", "protein_name": "Cytochrome c oxidase assembly factor SCO1", "gene_name": "SCO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14548-1", "protein_name": "Cytochrome c oxidase subunit 7A2-like, mitochondrial", "gene_name": "COX7A2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02221-1", "protein_name": "Cytochrome c oxidase subunit 6A2, mitochondrial", "gene_name": "COX6A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUV8-1", "protein_name": "GEL complex subunit OPTI", "gene_name": "RAB5IF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00403-1", "protein_name": "Cytochrome c oxidase subunit 2", "gene_name": "MT-CO2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10176-1", "protein_name": "Cytochrome c oxidase subunit 8A, 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"uniprot_canonical_ac": "Q9BVV7-1", "protein_name": "Mitochondrial import inner membrane translocase subunit Tim21", "gene_name": "TIMM21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86WW8-1", "protein_name": "Cytochrome c oxidase assembly factor 5", "gene_name": "COA5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5RI15-1", "protein_name": "Cytochrome c oxidase assembly protein COX20, mitochondrial", "gene_name": "COX20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z4L0-1", "protein_name": "Cytochrome c oxidase subunit 8C, mitochondrial", "gene_name": "COX8C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6N1-1", "protein_name": "Cytochrome c oxidase assembly protein COX11, mitochondrial", "gene_name": "COX11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q49B96-1", "protein_name": "Cytochrome c oxidase assembly protein COX19", "gene_name": "COX19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09669-1", "protein_name": "Cytochrome c oxidase 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"gene_name": "SURF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00414-1", "protein_name": "Cytochrome c oxidase subunit 3", "gene_name": "MT-CO3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96I36-1", "protein_name": "Cytochrome c oxidase assembly protein COX14", "gene_name": "COX14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96KJ9-1", "protein_name": "Cytochrome c oxidase subunit 4 isoform 2, mitochondrial", "gene_name": "COX4I2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2R0-1", "protein_name": "Cytochrome c oxidase assembly factor 3 homolog, mitochondrial", "gene_name": "COA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75880-1", "protein_name": "Cytochrome c oxidase assembly factor SCO1", "gene_name": "SCO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14548-1", "protein_name": "Cytochrome c oxidase subunit 7A2-like, mitochondrial", "gene_name": "COX7A2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02221-1", "protein_name": "Cytochrome c oxidase subunit 6A2, mitochondrial", "gene_name": "COX6A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUV8-1", "protein_name": "GEL complex subunit OPTI", "gene_name": "RAB5IF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00403-1", "protein_name": "Cytochrome c oxidase subunit 2", "gene_name": "MT-CO2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10176-1", "protein_name": "Cytochrome c oxidase subunit 8A, mitochondrial", "gene_name": "COX8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12074-1", "protein_name": "Cytochrome c oxidase subunit 6A1, mitochondrial", "gene_name": "COX6A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14854-1", "protein_name": "Cytochrome c oxidase subunit 6B1", "gene_name": "COX6B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z7K0-1", "protein_name": "COX assembly mitochondrial protein homolog", "gene_name": "CMC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96MF6-1", "protein_name": "Coenzyme Q-binding protein COQ10 homolog A, mitochondrial", "gene_name": "COQ10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14061-1", "protein_name": "Cytochrome c oxidase copper chaperone", "gene_name": "COX17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10606-1", "protein_name": "Cytochrome c oxidase subunit 5B, mitochondrial", "gene_name": "COX5B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y241-1", "protein_name": "HIG1 domain family member 1A, mitochondrial", "gene_name": "HIGD1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6UWS5-1", "protein_name": "Protein PET117 homolog, mitochondrial", "gene_name": "PET117", "tax_name": "Human" }, { "uniprot_canonical_ac": "A0PJW6-1", "protein_name": "Transmembrane protein 223", "gene_name": "TMEM223", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q8N5G0", "url": "https://www.uniprot.org/uniprotkb/Q8N5G0" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.23125284", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 47 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "MITRAC links mitochondrial protein translocation to respiratory-chain assembly and translational regulation.", "journal": "Cell", "date": "2012", "authors": "Mick DU, Dennerlein S, Wiese H, Reinhold R, Pacheu-Grau D, Lorenzi I, Sasarman F, Weraarpachai W, Shoubridge EA, Warscheid B, Rehling P", "reference": { "type": "PubMed", "id": "23260140", "url": "https://pubmed.ncbi.nlm.nih.gov/23260140" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8N5G0-1", "protein_name": "Small integral membrane protein 20", "gene_name": "SMIM20", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43819-1", "protein_name": "Cytochrome c oxidase assembly factor SCO2", "gene_name": "SCO2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20674-1", "protein_name": "Cytochrome c oxidase subunit 5A, mitochondrial", "gene_name": "COX5A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13073-1", "protein_name": "Cytochrome c oxidase subunit 4 isoform 1, mitochondrial", "gene_name": "COX4I1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P0S2-1", "protein_name": "Cytochrome c 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"COX8C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6N1-1", "protein_name": "Cytochrome c oxidase assembly protein COX11, mitochondrial", "gene_name": "COX11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q49B96-1", "protein_name": "Cytochrome c oxidase assembly protein COX19", "gene_name": "COX19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09669-1", "protein_name": "Cytochrome c oxidase subunit 6C", "gene_name": "COX6C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BW72-1", "protein_name": "HIG1 domain family member 2A, mitochondrial", "gene_name": "HIGD2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00483-1", "protein_name": "Cytochrome c oxidase subunit FA4", "gene_name": "COXFA4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BSH4-1", "protein_name": "Translational activator of cytochrome c oxidase 1", "gene_name": "TACO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0DJ07-1", "protein_name": "Protein PET100 homolog, mitochondrial", "gene_name": "PET100", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9GZY4-1", "protein_name": "Cytochrome c oxidase assembly factor 1 homolog", "gene_name": "COA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14406-1", "protein_name": "Cytochrome c oxidase subunit 7A2, mitochondrial", "gene_name": "COX7A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24310-1", "protein_name": "Cytochrome c oxidase subunit 7A1, mitochondrial", "gene_name": "COX7A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24311-1", "protein_name": "Cytochrome c oxidase subunit 7B, mitochondrial", "gene_name": "COX7B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6YFQ2-1", "protein_name": "Cytochrome c oxidase subunit 6B2", "gene_name": "COX6B2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7KZN9-1", "protein_name": "Heme A synthase COX15", "gene_name": "COX15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N8Q8-1", "protein_name": "Cytochrome c oxidase assembly protein COX18, mitochondrial", "gene_name": "COX18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q53S58-1", "protein_name": "Transmembrane protein 177", "gene_name": "TMEM177", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00395-1", "protein_name": "Cytochrome c oxidase subunit 1", "gene_name": "MT-CO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15526-1", "protein_name": "Surfeit locus protein 1", "gene_name": "SURF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00414-1", "protein_name": "Cytochrome c oxidase subunit 3", "gene_name": "MT-CO3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96I36-1", "protein_name": "Cytochrome c oxidase assembly protein COX14", "gene_name": "COX14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96KJ9-1", "protein_name": "Cytochrome c oxidase subunit 4 isoform 2, mitochondrial", "gene_name": "COX4I2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2R0-1", "protein_name": "Cytochrome c oxidase assembly factor 3 homolog, mitochondrial", "gene_name": "COA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75880-1", "protein_name": "Cytochrome c oxidase assembly factor SCO1", "gene_name": "SCO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14548-1", "protein_name": "Cytochrome c oxidase subunit 7A2-like, mitochondrial", "gene_name": "COX7A2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02221-1", "protein_name": "Cytochrome c oxidase subunit 6A2, mitochondrial", "gene_name": "COX6A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUV8-1", "protein_name": "GEL complex subunit OPTI", "gene_name": "RAB5IF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00403-1", "protein_name": "Cytochrome c oxidase subunit 2", "gene_name": "MT-CO2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10176-1", "protein_name": "Cytochrome c oxidase subunit 8A, mitochondrial", "gene_name": "COX8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12074-1", "protein_name": "Cytochrome c oxidase subunit 6A1, mitochondrial", "gene_name": "COX6A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14854-1", "protein_name": "Cytochrome c oxidase subunit 6B1", "gene_name": "COX6B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z7K0-1", "protein_name": "COX assembly mitochondrial protein homolog", "gene_name": "CMC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96MF6-1", "protein_name": "Coenzyme Q-binding protein COQ10 homolog A, mitochondrial", "gene_name": "COQ10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14061-1", "protein_name": "Cytochrome c oxidase copper chaperone", "gene_name": "COX17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10606-1", "protein_name": "Cytochrome c oxidase subunit 5B, mitochondrial", "gene_name": "COX5B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y241-1", "protein_name": "HIG1 domain family member 1A, mitochondrial", "gene_name": "HIGD1A", "tax_name": "Human" }, { "uniprot_canonical_ac": 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"count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "COX19 mediates the transduction of a mitochondrial redox signal from SCO1 that regulates ATP7A-mediated cellular copper efflux.", "journal": "Molecular biology of the cell", "date": "2013", "authors": "Leary SC, Cobine PA, Nishimura T, Verdijk RM, de Krijger R, de Coo R, Tarnopolsky MA, Winge DR, Shoubridge EA", "reference": { "type": "PubMed", "id": "23345593", "url": "https://pubmed.ncbi.nlm.nih.gov/23345593" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8N5G0-1", "protein_name": "Small integral membrane protein 20", "gene_name": "SMIM20", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43819-1", "protein_name": 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"uniprot_canonical_ac": "Q9BUV8-1", "protein_name": "GEL complex subunit OPTI", "gene_name": "RAB5IF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00403-1", "protein_name": "Cytochrome c oxidase subunit 2", "gene_name": "MT-CO2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10176-1", "protein_name": "Cytochrome c oxidase subunit 8A, mitochondrial", "gene_name": "COX8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12074-1", "protein_name": "Cytochrome c oxidase subunit 6A1, mitochondrial", "gene_name": "COX6A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14854-1", "protein_name": "Cytochrome c oxidase subunit 6B1", "gene_name": "COX6B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z7K0-1", "protein_name": "COX assembly mitochondrial protein homolog", "gene_name": "CMC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96MF6-1", "protein_name": "Coenzyme Q-binding protein COQ10 homolog A, mitochondrial", "gene_name": "COQ10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14061-1", "protein_name": "Cytochrome c oxidase copper chaperone", "gene_name": "COX17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10606-1", "protein_name": "Cytochrome c oxidase subunit 5B, mitochondrial", "gene_name": "COX5B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y241-1", "protein_name": "HIG1 domain family member 1A, mitochondrial", "gene_name": "HIGD1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6UWS5-1", "protein_name": "Protein PET117 homolog, mitochondrial", "gene_name": "PET117", "tax_name": "Human" }, { "uniprot_canonical_ac": "A0PJW6-1", "protein_name": "Transmembrane protein 223", "gene_name": "TMEM223", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q8N5G0", "url": "https://www.uniprot.org/uniprotkb/Q8N5G0" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": 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AR, Sailer A, Hurles ME, Stalker J, Hargreaves I, Woodward CE, Sweeney MG, Muntoni F, Houlden H, Taanman JW, Hanna MG", "reference": { "type": "PubMed", "id": "23746447", "url": "https://pubmed.ncbi.nlm.nih.gov/23746447" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8N5G0-1", "protein_name": "Small integral membrane protein 20", "gene_name": "SMIM20", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43819-1", "protein_name": "Cytochrome c oxidase assembly factor SCO2", "gene_name": "SCO2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20674-1", "protein_name": "Cytochrome c oxidase subunit 5A, mitochondrial", "gene_name": "COX5A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13073-1", "protein_name": "Cytochrome c oxidase subunit 4 isoform 1, mitochondrial", "gene_name": "COX4I1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P0S2-1", "protein_name": "Cytochrome c oxidase assembly protein COX16 homolog, mitochondrial", "gene_name": 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"uniprot_canonical_ac": "Q9GZY4-1", "protein_name": "Cytochrome c oxidase assembly factor 1 homolog", "gene_name": "COA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14406-1", "protein_name": "Cytochrome c oxidase subunit 7A2, mitochondrial", "gene_name": "COX7A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24310-1", "protein_name": "Cytochrome c oxidase subunit 7A1, mitochondrial", "gene_name": "COX7A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24311-1", "protein_name": "Cytochrome c oxidase subunit 7B, mitochondrial", "gene_name": "COX7B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6YFQ2-1", "protein_name": "Cytochrome c oxidase subunit 6B2", "gene_name": "COX6B2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7KZN9-1", "protein_name": "Heme A synthase COX15", "gene_name": "COX15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N8Q8-1", "protein_name": "Cytochrome c oxidase assembly protein COX18, mitochondrial", "gene_name": "COX18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q53S58-1", "protein_name": "Transmembrane protein 177", "gene_name": "TMEM177", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00395-1", "protein_name": "Cytochrome c oxidase subunit 1", "gene_name": "MT-CO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15526-1", "protein_name": "Surfeit locus protein 1", "gene_name": "SURF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00414-1", "protein_name": "Cytochrome c oxidase subunit 3", "gene_name": "MT-CO3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96I36-1", "protein_name": "Cytochrome c oxidase assembly protein COX14", "gene_name": "COX14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96KJ9-1", "protein_name": "Cytochrome c oxidase subunit 4 isoform 2, mitochondrial", "gene_name": "COX4I2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2R0-1", "protein_name": "Cytochrome c oxidase assembly factor 3 homolog, mitochondrial", "gene_name": "COA3", 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homolog, mitochondrial", "gene_name": "PET117", "tax_name": "Human" }, { "uniprot_canonical_ac": "A0PJW6-1", "protein_name": "Transmembrane protein 223", "gene_name": "TMEM223", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q8N5G0", "url": "https://www.uniprot.org/uniprotkb/Q8N5G0" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.23746447", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 47 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { 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"total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Human COX20 cooperates with SCO1 and SCO2 to mature COX2 and promote the assembly of cytochrome c oxidase.", "journal": "Human molecular genetics", "date": "2014", "authors": "Bourens M, Boulet A, Leary SC, Barrientos A", "reference": { "type": "PubMed", "id": "24403053", "url": "https://pubmed.ncbi.nlm.nih.gov/24403053" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8N5G0-1", "protein_name": "Small integral membrane protein 20", "gene_name": "SMIM20", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43819-1", "protein_name": "Cytochrome c oxidase assembly factor SCO2", "gene_name": "SCO2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20674-1", "protein_name": "Cytochrome c oxidase subunit 5A, mitochondrial", "gene_name": "COX5A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13073-1", "protein_name": "Cytochrome c oxidase subunit 4 isoform 1, mitochondrial", "gene_name": "COX4I1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P0S2-1", "protein_name": "Cytochrome c oxidase assembly protein COX16 homolog, mitochondrial", "gene_name": "COX16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15954-1", "protein_name": "Cytochrome c oxidase subunit 7C, mitochondrial", "gene_name": "COX7C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H8M1-1", "protein_name": "Coenzyme Q-binding protein COQ10 homolog B, mitochondrial", "gene_name": "COQ10B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BVV7-1", "protein_name": "Mitochondrial import inner membrane translocase subunit Tim21", "gene_name": "TIMM21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86WW8-1", "protein_name": "Cytochrome c oxidase assembly factor 5", "gene_name": "COA5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5RI15-1", "protein_name": "Cytochrome c oxidase assembly protein COX20, mitochondrial", "gene_name": "COX20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z4L0-1", "protein_name": "Cytochrome c oxidase subunit 8C, mitochondrial", "gene_name": "COX8C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6N1-1", "protein_name": "Cytochrome c oxidase assembly protein COX11, mitochondrial", "gene_name": "COX11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q49B96-1", "protein_name": "Cytochrome c oxidase assembly protein COX19", "gene_name": "COX19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09669-1", "protein_name": "Cytochrome c oxidase subunit 6C", "gene_name": "COX6C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BW72-1", "protein_name": "HIG1 domain family member 2A, mitochondrial", "gene_name": "HIGD2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00483-1", "protein_name": "Cytochrome c oxidase subunit FA4", "gene_name": "COXFA4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BSH4-1", "protein_name": "Translational activator of cytochrome c oxidase 1", "gene_name": "TACO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0DJ07-1", "protein_name": "Protein PET100 homolog, mitochondrial", "gene_name": "PET100", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9GZY4-1", "protein_name": "Cytochrome c oxidase assembly factor 1 homolog", "gene_name": "COA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14406-1", "protein_name": "Cytochrome c oxidase subunit 7A2, mitochondrial", "gene_name": "COX7A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24310-1", "protein_name": "Cytochrome c oxidase subunit 7A1, mitochondrial", "gene_name": "COX7A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24311-1", "protein_name": "Cytochrome c oxidase subunit 7B, mitochondrial", "gene_name": "COX7B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6YFQ2-1", "protein_name": "Cytochrome c oxidase subunit 6B2", "gene_name": "COX6B2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7KZN9-1", "protein_name": "Heme A synthase COX15", "gene_name": "COX15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N8Q8-1", "protein_name": "Cytochrome c oxidase assembly protein COX18, mitochondrial", "gene_name": "COX18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q53S58-1", "protein_name": "Transmembrane protein 177", "gene_name": "TMEM177", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00395-1", "protein_name": "Cytochrome c oxidase subunit 1", "gene_name": "MT-CO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15526-1", "protein_name": "Surfeit locus protein 1", "gene_name": "SURF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00414-1", "protein_name": "Cytochrome c oxidase subunit 3", "gene_name": "MT-CO3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96I36-1", "protein_name": "Cytochrome c oxidase assembly protein COX14", "gene_name": "COX14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96KJ9-1", "protein_name": "Cytochrome c oxidase subunit 4 isoform 2, mitochondrial", "gene_name": "COX4I2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2R0-1", "protein_name": "Cytochrome c oxidase assembly factor 3 homolog, mitochondrial", "gene_name": "COA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75880-1", "protein_name": "Cytochrome c oxidase assembly factor SCO1", "gene_name": "SCO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14548-1", "protein_name": "Cytochrome c oxidase subunit 7A2-like, mitochondrial", "gene_name": "COX7A2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02221-1", "protein_name": "Cytochrome c oxidase subunit 6A2, mitochondrial", "gene_name": "COX6A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUV8-1", "protein_name": "GEL complex subunit OPTI", "gene_name": "RAB5IF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00403-1", "protein_name": "Cytochrome c oxidase subunit 2", "gene_name": "MT-CO2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10176-1", "protein_name": "Cytochrome c oxidase subunit 8A, mitochondrial", "gene_name": "COX8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12074-1", "protein_name": "Cytochrome c oxidase subunit 6A1, mitochondrial", "gene_name": "COX6A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14854-1", "protein_name": "Cytochrome c oxidase subunit 6B1", "gene_name": "COX6B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z7K0-1", "protein_name": "COX assembly mitochondrial protein homolog", "gene_name": "CMC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96MF6-1", "protein_name": "Coenzyme Q-binding protein COQ10 homolog A, mitochondrial", "gene_name": "COQ10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14061-1", "protein_name": "Cytochrome c oxidase copper chaperone", "gene_name": "COX17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10606-1", "protein_name": "Cytochrome c oxidase subunit 5B, mitochondrial", "gene_name": "COX5B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y241-1", "protein_name": "HIG1 domain family member 1A, mitochondrial", "gene_name": "HIGD1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6UWS5-1", "protein_name": "Protein PET117 homolog, mitochondrial", "gene_name": "PET117", "tax_name": "Human" }, { "uniprot_canonical_ac": "A0PJW6-1", "protein_name": "Transmembrane protein 223", "gene_name": "TMEM223", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q8N5G0", "url": "https://www.uniprot.org/uniprotkb/Q8N5G0" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.24403053", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 47 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Redox-regulated dynamic interplay between Cox19 and the copper-binding protein Cox11 in the intermembrane space of mitochondria facilitates biogenesis of cytochrome c oxidase.", "journal": "Molecular biology of the cell", "date": "2015-07-01", "authors": "Bode Manuela, Woellhaf Michael W, Bohnert Maria, van der Laan Martin, Sommer Frederik, Jung Martin, Zimmermann Richard, Schroda Michael, Herrmann Johannes M", "reference": { "type": "PubMed", "id": "25926683", "url": "https://pubmed.ncbi.nlm.nih.gov/25926683" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8N5G0-1", "protein_name": "Small integral membrane protein 20", "gene_name": "SMIM20", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43819-1", "protein_name": "Cytochrome c oxidase assembly factor SCO2", "gene_name": "SCO2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20674-1", "protein_name": "Cytochrome c oxidase subunit 5A, mitochondrial", "gene_name": "COX5A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13073-1", "protein_name": "Cytochrome c oxidase subunit 4 isoform 1, mitochondrial", "gene_name": "COX4I1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P0S2-1", "protein_name": "Cytochrome c oxidase assembly protein COX16 homolog, mitochondrial", "gene_name": "COX16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15954-1", "protein_name": "Cytochrome c oxidase subunit 7C, mitochondrial", "gene_name": "COX7C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H8M1-1", "protein_name": "Coenzyme Q-binding protein COQ10 homolog B, mitochondrial", "gene_name": "COQ10B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BVV7-1", "protein_name": "Mitochondrial import inner membrane translocase subunit Tim21", "gene_name": "TIMM21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86WW8-1", "protein_name": "Cytochrome c oxidase assembly factor 5", "gene_name": "COA5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5RI15-1", "protein_name": "Cytochrome c oxidase assembly protein COX20, mitochondrial", "gene_name": "COX20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z4L0-1", "protein_name": "Cytochrome c oxidase subunit 8C, mitochondrial", "gene_name": "COX8C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6N1-1", "protein_name": "Cytochrome c oxidase assembly protein COX11, mitochondrial", "gene_name": "COX11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q49B96-1", "protein_name": "Cytochrome c oxidase assembly protein COX19", "gene_name": "COX19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09669-1", "protein_name": "Cytochrome c oxidase subunit 6C", "gene_name": "COX6C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BW72-1", "protein_name": "HIG1 domain family member 2A, mitochondrial", "gene_name": "HIGD2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00483-1", "protein_name": "Cytochrome c oxidase subunit FA4", "gene_name": "COXFA4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BSH4-1", "protein_name": "Translational activator of cytochrome c oxidase 1", "gene_name": "TACO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0DJ07-1", "protein_name": "Protein PET100 homolog, mitochondrial", "gene_name": "PET100", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9GZY4-1", "protein_name": "Cytochrome c oxidase assembly factor 1 homolog", "gene_name": "COA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14406-1", "protein_name": "Cytochrome c oxidase subunit 7A2, mitochondrial", "gene_name": "COX7A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24310-1", "protein_name": "Cytochrome c oxidase subunit 7A1, mitochondrial", "gene_name": "COX7A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24311-1", "protein_name": "Cytochrome c oxidase subunit 7B, mitochondrial", "gene_name": "COX7B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6YFQ2-1", "protein_name": "Cytochrome c oxidase subunit 6B2", "gene_name": "COX6B2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7KZN9-1", "protein_name": "Heme A synthase COX15", "gene_name": "COX15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N8Q8-1", "protein_name": "Cytochrome c oxidase assembly protein COX18, mitochondrial", "gene_name": "COX18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q53S58-1", "protein_name": "Transmembrane protein 177", "gene_name": "TMEM177", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00395-1", "protein_name": "Cytochrome c oxidase subunit 1", "gene_name": "MT-CO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15526-1", "protein_name": "Surfeit locus protein 1", "gene_name": "SURF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00414-1", "protein_name": "Cytochrome c oxidase subunit 3", "gene_name": "MT-CO3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96I36-1", "protein_name": "Cytochrome c oxidase assembly protein COX14", "gene_name": "COX14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96KJ9-1", "protein_name": "Cytochrome c oxidase subunit 4 isoform 2, mitochondrial", "gene_name": "COX4I2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2R0-1", "protein_name": "Cytochrome c oxidase assembly factor 3 homolog, mitochondrial", "gene_name": "COA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75880-1", "protein_name": "Cytochrome c oxidase assembly factor SCO1", "gene_name": "SCO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14548-1", "protein_name": "Cytochrome c oxidase subunit 7A2-like, mitochondrial", "gene_name": "COX7A2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02221-1", "protein_name": "Cytochrome c oxidase subunit 6A2, mitochondrial", "gene_name": "COX6A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUV8-1", "protein_name": "GEL complex subunit OPTI", "gene_name": "RAB5IF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00403-1", "protein_name": "Cytochrome c oxidase subunit 2", "gene_name": "MT-CO2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10176-1", "protein_name": "Cytochrome c oxidase subunit 8A, mitochondrial", "gene_name": "COX8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12074-1", "protein_name": "Cytochrome c oxidase subunit 6A1, mitochondrial", "gene_name": "COX6A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14854-1", "protein_name": "Cytochrome c oxidase subunit 6B1", "gene_name": "COX6B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z7K0-1", "protein_name": "COX assembly mitochondrial protein homolog", "gene_name": "CMC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96MF6-1", "protein_name": "Coenzyme Q-binding protein COQ10 homolog A, mitochondrial", "gene_name": "COQ10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14061-1", "protein_name": "Cytochrome c oxidase copper chaperone", "gene_name": "COX17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10606-1", "protein_name": "Cytochrome c oxidase subunit 5B, mitochondrial", "gene_name": "COX5B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y241-1", "protein_name": "HIG1 domain family member 1A, mitochondrial", "gene_name": "HIGD1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6UWS5-1", "protein_name": "Protein PET117 homolog, mitochondrial", "gene_name": "PET117", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19516-1", "protein_name": "Cytochrome c oxidase assembly protein COX11, mitochondrial", "gene_name": "COX11", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q3E731-1", "protein_name": "Cytochrome c oxidase assembly protein COX19", "gene_name": "COX19", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "A0PJW6-1", "protein_name": "Transmembrane protein 223", "gene_name": "TMEM223", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q8N5G0", "url": "https://www.uniprot.org/uniprotkb/Q8N5G0" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 37, "end_pos": 38, "sequence_org": "YL", "sequence_mut": "EE", "comment": "Does not prevent cysteine oxidation but blocks recognition by the disulfide relay system, abolishes binding to COX11, protein absent from mitochondrion, abolishes growth on non-fermentable carbon sources; when associated with 59-E-E-60.", "evidence": [ { "database": "UniProtKB", "id": "Q3E731", "url": "https://www.uniprot.org/uniprotkb/Q3E731" }, { "database": "PubMed", "id": "25926683", "url": "https://pubmed.ncbi.nlm.nih.gov/25926683" } ], "uniprot_canonical_ac": "Q3E731-1" }, { "start_pos": 59, "end_pos": 60, "sequence_org": "YL", "sequence_mut": "EE", "comment": "Does not prevent cysteine oxidation but blocks recognition by the disulfide relay system, abolishes binding to COX11, protein absent from mitochondrion, abolishes growth on non-fermentable carbon sources; when associated with 37-E-E-38.", "evidence": [ { "database": "UniProtKB", "id": "Q3E731", "url": "https://www.uniprot.org/uniprotkb/Q3E731" }, { "database": "PubMed", "id": "25926683", "url": "https://pubmed.ncbi.nlm.nih.gov/25926683" } ], "uniprot_canonical_ac": "Q3E731-1" } ], "record_id": "pubmed.25926683", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 49 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", 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"o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Cooperation between COA6 and SCO2 in COX2 maturation during cytochrome c oxidase assembly links two mitochondrial cardiomyopathies.", "journal": "Cell metabolism", "date": "2015", "authors": "Pacheu-Grau D, Bareth B, Dudek J, Juris L, Vogtle FN, Wissel M, Leary SC, Dennerlein S, Rehling P, Deckers M", "reference": { "type": "PubMed", "id": "25959673", "url": "https://pubmed.ncbi.nlm.nih.gov/25959673" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8N5G0-1", "protein_name": "Small integral membrane protein 20", "gene_name": "SMIM20", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43819-1", "protein_name": "Cytochrome c oxidase assembly factor SCO2", "gene_name": "SCO2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20674-1", "protein_name": "Cytochrome c oxidase subunit 5A, mitochondrial", "gene_name": "COX5A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13073-1", "protein_name": "Cytochrome c oxidase subunit 4 isoform 1, mitochondrial", "gene_name": "COX4I1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P0S2-1", "protein_name": "Cytochrome c oxidase assembly protein COX16 homolog, mitochondrial", "gene_name": "COX16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15954-1", "protein_name": "Cytochrome c oxidase subunit 7C, mitochondrial", "gene_name": "COX7C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5JTJ3-1", "protein_name": "Cytochrome c oxidase assembly factor 6 homolog", "gene_name": "COA6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H8M1-1", "protein_name": "Coenzyme Q-binding protein COQ10 homolog B, mitochondrial", "gene_name": "COQ10B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BVV7-1", "protein_name": "Mitochondrial import inner membrane translocase subunit Tim21", "gene_name": "TIMM21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86WW8-1", "protein_name": "Cytochrome c oxidase assembly factor 5", "gene_name": "COA5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5RI15-1", "protein_name": "Cytochrome c oxidase assembly protein COX20, mitochondrial", "gene_name": "COX20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z4L0-1", "protein_name": "Cytochrome c oxidase subunit 8C, mitochondrial", "gene_name": "COX8C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6N1-1", "protein_name": "Cytochrome c oxidase assembly protein COX11, mitochondrial", "gene_name": "COX11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q49B96-1", "protein_name": "Cytochrome c oxidase assembly protein COX19", "gene_name": "COX19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09669-1", "protein_name": "Cytochrome c oxidase subunit 6C", "gene_name": "COX6C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BW72-1", "protein_name": "HIG1 domain family member 2A, mitochondrial", "gene_name": "HIGD2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q3E846-1", "protein_name": "Cytochrome c oxidase assembly factor 6", "gene_name": "COA6", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "O00483-1", "protein_name": "Cytochrome c oxidase subunit FA4", "gene_name": "COXFA4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BSH4-1", "protein_name": "Translational activator of cytochrome c oxidase 1", "gene_name": "TACO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0DJ07-1", "protein_name": "Protein PET100 homolog, mitochondrial", "gene_name": "PET100", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9GZY4-1", "protein_name": "Cytochrome c oxidase assembly factor 1 homolog", "gene_name": "COA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14406-1", "protein_name": "Cytochrome c oxidase subunit 7A2, mitochondrial", "gene_name": "COX7A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24310-1", "protein_name": "Cytochrome c oxidase subunit 7A1, mitochondrial", "gene_name": "COX7A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24311-1", "protein_name": "Cytochrome c oxidase subunit 7B, mitochondrial", "gene_name": "COX7B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6YFQ2-1", "protein_name": "Cytochrome c oxidase subunit 6B2", "gene_name": "COX6B2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7KZN9-1", "protein_name": "Heme A synthase COX15", "gene_name": "COX15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N8Q8-1", "protein_name": "Cytochrome c oxidase assembly protein COX18, mitochondrial", "gene_name": "COX18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q53S58-1", "protein_name": "Transmembrane protein 177", "gene_name": "TMEM177", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00395-1", "protein_name": "Cytochrome c oxidase subunit 1", "gene_name": "MT-CO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15526-1", "protein_name": "Surfeit locus protein 1", "gene_name": "SURF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00414-1", "protein_name": "Cytochrome c oxidase subunit 3", "gene_name": "MT-CO3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96I36-1", "protein_name": "Cytochrome c oxidase assembly protein COX14", "gene_name": "COX14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96KJ9-1", "protein_name": "Cytochrome c oxidase subunit 4 isoform 2, mitochondrial", "gene_name": "COX4I2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2R0-1", "protein_name": "Cytochrome c oxidase assembly factor 3 homolog, mitochondrial", "gene_name": "COA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75880-1", "protein_name": "Cytochrome c oxidase assembly factor SCO1", "gene_name": "SCO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14548-1", "protein_name": "Cytochrome c oxidase subunit 7A2-like, mitochondrial", "gene_name": "COX7A2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02221-1", "protein_name": "Cytochrome c oxidase subunit 6A2, mitochondrial", "gene_name": "COX6A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUV8-1", "protein_name": "GEL complex subunit OPTI", "gene_name": "RAB5IF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00403-1", "protein_name": "Cytochrome c oxidase subunit 2", "gene_name": "MT-CO2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10176-1", "protein_name": "Cytochrome c oxidase subunit 8A, mitochondrial", "gene_name": "COX8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12074-1", "protein_name": "Cytochrome c oxidase subunit 6A1, mitochondrial", "gene_name": "COX6A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14854-1", "protein_name": "Cytochrome c oxidase subunit 6B1", "gene_name": "COX6B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z7K0-1", "protein_name": "COX assembly mitochondrial protein homolog", "gene_name": "CMC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96MF6-1", "protein_name": "Coenzyme Q-binding protein COQ10 homolog A, mitochondrial", "gene_name": "COQ10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14061-1", "protein_name": "Cytochrome c oxidase copper chaperone", "gene_name": "COX17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10606-1", "protein_name": "Cytochrome c oxidase subunit 5B, mitochondrial", "gene_name": "COX5B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y241-1", "protein_name": "HIG1 domain family member 1A, mitochondrial", "gene_name": "HIGD1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6UWS5-1", "protein_name": "Protein PET117 homolog, mitochondrial", "gene_name": "PET117", "tax_name": "Human" }, { "uniprot_canonical_ac": "A0PJW6-1", "protein_name": "Transmembrane protein 223", "gene_name": "TMEM223", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q8N5G0", "url": "https://www.uniprot.org/uniprotkb/Q8N5G0" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.25959673", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 49 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "MITRAC7 Acts as a COX1-Specific Chaperone and Reveals a Checkpoint during Cytochrome c Oxidase Assembly.", "journal": "Cell reports", "date": "2015", "authors": "Dennerlein S, Oeljeklaus S, Jans D, Hellwig C, Bareth B, Jakobs S, Deckers M, Warscheid B, Rehling P", "reference": { "type": "PubMed", "id": "26321642", "url": "https://pubmed.ncbi.nlm.nih.gov/26321642" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8N5G0-1", "protein_name": "Small integral membrane protein 20", "gene_name": "SMIM20", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43819-1", "protein_name": "Cytochrome c oxidase assembly 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"Cytochrome c oxidase subunit 7B, mitochondrial", "gene_name": "COX7B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6YFQ2-1", "protein_name": "Cytochrome c oxidase subunit 6B2", "gene_name": "COX6B2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7KZN9-1", "protein_name": "Heme A synthase COX15", "gene_name": "COX15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N8Q8-1", "protein_name": "Cytochrome c oxidase assembly protein COX18, mitochondrial", "gene_name": "COX18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q53S58-1", "protein_name": "Transmembrane protein 177", "gene_name": "TMEM177", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00395-1", "protein_name": "Cytochrome c oxidase subunit 1", "gene_name": "MT-CO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15526-1", "protein_name": "Surfeit locus protein 1", "gene_name": "SURF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00414-1", "protein_name": "Cytochrome c oxidase subunit 3", "gene_name": "MT-CO3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96I36-1", "protein_name": "Cytochrome c oxidase assembly protein COX14", "gene_name": "COX14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96KJ9-1", "protein_name": "Cytochrome c oxidase subunit 4 isoform 2, mitochondrial", "gene_name": "COX4I2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2R0-1", "protein_name": "Cytochrome c oxidase assembly factor 3 homolog, mitochondrial", "gene_name": "COA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75880-1", "protein_name": "Cytochrome c oxidase assembly factor SCO1", "gene_name": "SCO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14548-1", "protein_name": "Cytochrome c oxidase subunit 7A2-like, mitochondrial", "gene_name": "COX7A2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02221-1", "protein_name": "Cytochrome c oxidase subunit 6A2, mitochondrial", "gene_name": "COX6A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUV8-1", "protein_name": "GEL complex subunit OPTI", "gene_name": "RAB5IF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00403-1", "protein_name": "Cytochrome c oxidase subunit 2", "gene_name": "MT-CO2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10176-1", "protein_name": "Cytochrome c oxidase subunit 8A, mitochondrial", "gene_name": "COX8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12074-1", "protein_name": "Cytochrome c oxidase subunit 6A1, mitochondrial", "gene_name": "COX6A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14854-1", "protein_name": "Cytochrome c oxidase subunit 6B1", "gene_name": "COX6B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z7K0-1", "protein_name": "COX assembly mitochondrial protein homolog", "gene_name": "CMC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96MF6-1", "protein_name": "Coenzyme Q-binding protein COQ10 homolog A, mitochondrial", "gene_name": "COQ10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14061-1", "protein_name": "Cytochrome c oxidase copper chaperone", "gene_name": "COX17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10606-1", "protein_name": "Cytochrome c oxidase subunit 5B, mitochondrial", "gene_name": "COX5B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y241-1", "protein_name": "HIG1 domain family member 1A, mitochondrial", "gene_name": "HIGD1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6UWS5-1", "protein_name": "Protein PET117 homolog, mitochondrial", "gene_name": "PET117", "tax_name": "Human" }, { "uniprot_canonical_ac": "A0PJW6-1", "protein_name": "Transmembrane protein 223", "gene_name": "TMEM223", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q8N5G0", "url": "https://www.uniprot.org/uniprotkb/Q8N5G0" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.26321642", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 47 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Mitochondrial Protein Synthesis Adapts to Influx of Nuclear-Encoded Protein.", "journal": "Cell", "date": "2016", "authors": "Richter-Dennerlein R, Oeljeklaus S, Lorenzi I, Ronsor C, Bareth B, Schendzielorz AB, Wang C, Warscheid B, Rehling P, Dennerlein S", "reference": { "type": "PubMed", "id": "27693358", "url": "https://pubmed.ncbi.nlm.nih.gov/27693358" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8N5G0-1", "protein_name": "Small integral membrane protein 20", "gene_name": "SMIM20", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43819-1", "protein_name": "Cytochrome c oxidase assembly factor SCO2", "gene_name": "SCO2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20674-1", "protein_name": "Cytochrome c oxidase subunit 5A, mitochondrial", "gene_name": "COX5A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13073-1", "protein_name": "Cytochrome c oxidase subunit 4 isoform 1, mitochondrial", "gene_name": "COX4I1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P0S2-1", "protein_name": "Cytochrome c oxidase assembly protein COX16 homolog, mitochondrial", "gene_name": "COX16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15954-1", "protein_name": "Cytochrome c oxidase subunit 7C, mitochondrial", "gene_name": "COX7C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H8M1-1", "protein_name": "Coenzyme Q-binding protein COQ10 homolog B, mitochondrial", "gene_name": "COQ10B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BVV7-1", "protein_name": "Mitochondrial import inner membrane translocase subunit Tim21", "gene_name": "TIMM21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86WW8-1", "protein_name": "Cytochrome c oxidase assembly factor 5", "gene_name": "COA5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5RI15-1", "protein_name": "Cytochrome c oxidase assembly protein COX20, mitochondrial", "gene_name": "COX20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z4L0-1", "protein_name": "Cytochrome c oxidase subunit 8C, mitochondrial", "gene_name": "COX8C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6N1-1", "protein_name": "Cytochrome c oxidase assembly protein COX11, mitochondrial", "gene_name": "COX11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q49B96-1", "protein_name": "Cytochrome c oxidase assembly protein COX19", "gene_name": "COX19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09669-1", "protein_name": "Cytochrome c oxidase subunit 6C", "gene_name": "COX6C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BW72-1", "protein_name": "HIG1 domain family member 2A, mitochondrial", "gene_name": "HIGD2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00483-1", "protein_name": "Cytochrome c oxidase subunit FA4", "gene_name": "COXFA4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BSH4-1", "protein_name": "Translational activator of cytochrome c oxidase 1", "gene_name": "TACO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0DJ07-1", "protein_name": "Protein PET100 homolog, mitochondrial", "gene_name": "PET100", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9GZY4-1", "protein_name": "Cytochrome c oxidase assembly factor 1 homolog", "gene_name": "COA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14406-1", "protein_name": "Cytochrome c oxidase subunit 7A2, mitochondrial", "gene_name": "COX7A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24310-1", "protein_name": "Cytochrome c oxidase subunit 7A1, mitochondrial", "gene_name": "COX7A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24311-1", "protein_name": "Cytochrome c oxidase subunit 7B, mitochondrial", "gene_name": "COX7B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6YFQ2-1", "protein_name": "Cytochrome c oxidase subunit 6B2", "gene_name": "COX6B2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7KZN9-1", "protein_name": "Heme A synthase COX15", "gene_name": "COX15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N8Q8-1", "protein_name": "Cytochrome c oxidase assembly protein COX18, mitochondrial", "gene_name": "COX18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q53S58-1", "protein_name": "Transmembrane protein 177", "gene_name": "TMEM177", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00395-1", "protein_name": "Cytochrome c oxidase subunit 1", "gene_name": "MT-CO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15526-1", "protein_name": "Surfeit locus protein 1", "gene_name": "SURF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00414-1", "protein_name": "Cytochrome c oxidase subunit 3", "gene_name": "MT-CO3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96I36-1", "protein_name": "Cytochrome c oxidase assembly protein COX14", "gene_name": "COX14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96KJ9-1", "protein_name": "Cytochrome c oxidase subunit 4 isoform 2, mitochondrial", "gene_name": "COX4I2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2R0-1", "protein_name": "Cytochrome c oxidase assembly factor 3 homolog, mitochondrial", "gene_name": "COA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75880-1", "protein_name": "Cytochrome c oxidase assembly factor SCO1", "gene_name": "SCO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14548-1", "protein_name": "Cytochrome c oxidase subunit 7A2-like, mitochondrial", "gene_name": "COX7A2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02221-1", "protein_name": "Cytochrome c oxidase subunit 6A2, mitochondrial", "gene_name": "COX6A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUV8-1", "protein_name": "GEL complex subunit OPTI", "gene_name": "RAB5IF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00403-1", "protein_name": "Cytochrome c oxidase subunit 2", "gene_name": "MT-CO2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10176-1", "protein_name": "Cytochrome c oxidase subunit 8A, mitochondrial", "gene_name": "COX8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12074-1", "protein_name": "Cytochrome c oxidase subunit 6A1, mitochondrial", "gene_name": "COX6A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14854-1", "protein_name": "Cytochrome c oxidase subunit 6B1", "gene_name": "COX6B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z7K0-1", "protein_name": "COX assembly mitochondrial protein homolog", "gene_name": "CMC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96MF6-1", "protein_name": "Coenzyme Q-binding protein COQ10 homolog A, mitochondrial", "gene_name": "COQ10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14061-1", "protein_name": "Cytochrome c oxidase copper chaperone", "gene_name": "COX17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10606-1", "protein_name": "Cytochrome c oxidase subunit 5B, mitochondrial", "gene_name": "COX5B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y241-1", "protein_name": "HIG1 domain family member 1A, mitochondrial", "gene_name": "HIGD1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6UWS5-1", "protein_name": "Protein PET117 homolog, mitochondrial", "gene_name": "PET117", "tax_name": "Human" }, { "uniprot_canonical_ac": "A0PJW6-1", "protein_name": "Transmembrane protein 223", "gene_name": "TMEM223", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q8N5G0", "url": "https://www.uniprot.org/uniprotkb/Q8N5G0" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.27693358", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 47 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A CMC1-knockout reveals translation-independent control of human mitochondrial complex IV biogenesis.", "journal": "EMBO reports", "date": "2017", "authors": "Bourens M, Barrientos A", "reference": { "type": "PubMed", "id": "28082314", "url": "https://pubmed.ncbi.nlm.nih.gov/28082314" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8N5G0-1", "protein_name": "Small integral membrane protein 20", "gene_name": "SMIM20", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43819-1", "protein_name": "Cytochrome c oxidase assembly factor SCO2", "gene_name": "SCO2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20674-1", "protein_name": "Cytochrome c oxidase subunit 5A, mitochondrial", "gene_name": "COX5A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13073-1", "protein_name": "Cytochrome c oxidase subunit 4 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"tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z4L0-1", "protein_name": "Cytochrome c oxidase subunit 8C, mitochondrial", "gene_name": "COX8C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6N1-1", "protein_name": "Cytochrome c oxidase assembly protein COX11, mitochondrial", "gene_name": "COX11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q49B96-1", "protein_name": "Cytochrome c oxidase assembly protein COX19", "gene_name": "COX19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09669-1", "protein_name": "Cytochrome c oxidase subunit 6C", "gene_name": "COX6C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BW72-1", "protein_name": "HIG1 domain family member 2A, mitochondrial", "gene_name": "HIGD2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00483-1", "protein_name": "Cytochrome c oxidase subunit FA4", "gene_name": "COXFA4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BSH4-1", "protein_name": "Translational activator of cytochrome c oxidase 1", "gene_name": "TACO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0DJ07-1", "protein_name": "Protein PET100 homolog, mitochondrial", "gene_name": "PET100", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9GZY4-1", "protein_name": "Cytochrome c oxidase assembly factor 1 homolog", "gene_name": "COA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14406-1", "protein_name": "Cytochrome c oxidase subunit 7A2, mitochondrial", "gene_name": "COX7A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24310-1", "protein_name": "Cytochrome c oxidase subunit 7A1, mitochondrial", "gene_name": "COX7A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24311-1", "protein_name": "Cytochrome c oxidase subunit 7B, mitochondrial", "gene_name": "COX7B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6YFQ2-1", "protein_name": "Cytochrome c oxidase subunit 6B2", "gene_name": "COX6B2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7KZN9-1", "protein_name": "Heme A synthase 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"gene_name": "COX4I2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2R0-1", "protein_name": "Cytochrome c oxidase assembly factor 3 homolog, mitochondrial", "gene_name": "COA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75880-1", "protein_name": "Cytochrome c oxidase assembly factor SCO1", "gene_name": "SCO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14548-1", "protein_name": "Cytochrome c oxidase subunit 7A2-like, mitochondrial", "gene_name": "COX7A2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02221-1", "protein_name": "Cytochrome c oxidase subunit 6A2, mitochondrial", "gene_name": "COX6A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUV8-1", "protein_name": "GEL complex subunit OPTI", "gene_name": "RAB5IF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00403-1", "protein_name": "Cytochrome c oxidase subunit 2", "gene_name": "MT-CO2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10176-1", "protein_name": "Cytochrome c oxidase subunit 8A, mitochondrial", "gene_name": "COX8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12074-1", "protein_name": "Cytochrome c oxidase subunit 6A1, mitochondrial", "gene_name": "COX6A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14854-1", "protein_name": "Cytochrome c oxidase subunit 6B1", "gene_name": "COX6B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z7K0-1", "protein_name": "COX assembly mitochondrial protein homolog", "gene_name": "CMC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96MF6-1", "protein_name": "Coenzyme Q-binding protein COQ10 homolog A, mitochondrial", "gene_name": "COQ10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14061-1", "protein_name": "Cytochrome c oxidase copper chaperone", "gene_name": "COX17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10606-1", "protein_name": "Cytochrome c oxidase subunit 5B, mitochondrial", "gene_name": "COX5B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y241-1", "protein_name": "HIG1 domain family member 1A, mitochondrial", "gene_name": "HIGD1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6UWS5-1", "protein_name": "Protein PET117 homolog, mitochondrial", "gene_name": "PET117", "tax_name": "Human" }, { "uniprot_canonical_ac": "A0PJW6-1", "protein_name": "Transmembrane protein 223", "gene_name": "TMEM223", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q8N5G0", "url": "https://www.uniprot.org/uniprotkb/Q8N5G0" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.28082314", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 47 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "MR-1S Interacts with PET100 and PET117 in Module-Based Assembly of Human Cytochrome c Oxidase.", "journal": "Cell reports", "date": "2017", "authors": "Vidoni S, Harbour ME, Guerrero-Castillo S, Signes A, Ding S, Fearnley IM, Taylor RW, Tiranti V, Arnold S, Fernandez-Vizarra E, Zeviani M", "reference": { "type": "PubMed", "id": "28199844", "url": "https://pubmed.ncbi.nlm.nih.gov/28199844" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8N5G0-1", "protein_name": "Small integral membrane protein 20", "gene_name": "SMIM20", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43819-1", "protein_name": "Cytochrome c oxidase assembly factor SCO2", "gene_name": "SCO2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20674-1", "protein_name": "Cytochrome c oxidase subunit 5A, mitochondrial", "gene_name": "COX5A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13073-1", "protein_name": "Cytochrome c oxidase subunit 4 isoform 1, mitochondrial", "gene_name": "COX4I1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P0S2-1", "protein_name": "Cytochrome c oxidase assembly protein COX16 homolog, mitochondrial", "gene_name": "COX16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15954-1", "protein_name": "Cytochrome c oxidase subunit 7C, mitochondrial", "gene_name": "COX7C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H8M1-1", "protein_name": "Coenzyme Q-binding protein COQ10 homolog B, mitochondrial", "gene_name": "COQ10B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BVV7-1", "protein_name": "Mitochondrial import inner membrane translocase subunit Tim21", "gene_name": "TIMM21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86WW8-1", "protein_name": "Cytochrome c oxidase assembly factor 5", "gene_name": "COA5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5RI15-1", "protein_name": "Cytochrome c oxidase assembly protein COX20, mitochondrial", "gene_name": "COX20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z4L0-1", "protein_name": "Cytochrome c oxidase subunit 8C, mitochondrial", "gene_name": "COX8C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6N1-1", "protein_name": "Cytochrome c oxidase assembly protein COX11, mitochondrial", "gene_name": "COX11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q49B96-1", "protein_name": "Cytochrome c oxidase assembly protein COX19", "gene_name": "COX19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09669-1", "protein_name": "Cytochrome c oxidase subunit 6C", "gene_name": "COX6C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BW72-1", "protein_name": "HIG1 domain family member 2A, mitochondrial", "gene_name": "HIGD2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00483-1", "protein_name": "Cytochrome c oxidase subunit FA4", "gene_name": "COXFA4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BSH4-1", "protein_name": "Translational activator of cytochrome c oxidase 1", "gene_name": "TACO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0DJ07-1", "protein_name": "Protein PET100 homolog, mitochondrial", "gene_name": "PET100", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9GZY4-1", "protein_name": "Cytochrome c oxidase assembly factor 1 homolog", "gene_name": "COA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14406-1", "protein_name": "Cytochrome c oxidase subunit 7A2, mitochondrial", "gene_name": "COX7A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24310-1", "protein_name": "Cytochrome c oxidase subunit 7A1, mitochondrial", "gene_name": "COX7A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24311-1", "protein_name": "Cytochrome c oxidase subunit 7B, mitochondrial", "gene_name": "COX7B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6YFQ2-1", "protein_name": "Cytochrome c oxidase subunit 6B2", "gene_name": "COX6B2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7KZN9-1", "protein_name": "Heme A synthase COX15", "gene_name": "COX15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N8Q8-1", "protein_name": "Cytochrome c oxidase assembly protein COX18, mitochondrial", "gene_name": "COX18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q53S58-1", "protein_name": "Transmembrane protein 177", "gene_name": "TMEM177", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00395-1", "protein_name": "Cytochrome c oxidase subunit 1", "gene_name": "MT-CO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15526-1", "protein_name": "Surfeit locus protein 1", "gene_name": "SURF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00414-1", "protein_name": "Cytochrome c oxidase subunit 3", "gene_name": "MT-CO3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96I36-1", "protein_name": "Cytochrome c oxidase assembly protein COX14", "gene_name": "COX14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96KJ9-1", "protein_name": "Cytochrome c oxidase subunit 4 isoform 2, mitochondrial", "gene_name": "COX4I2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2R0-1", "protein_name": "Cytochrome c oxidase assembly factor 3 homolog, mitochondrial", "gene_name": "COA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75880-1", "protein_name": "Cytochrome c oxidase assembly factor SCO1", "gene_name": "SCO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14548-1", "protein_name": "Cytochrome c oxidase subunit 7A2-like, mitochondrial", "gene_name": "COX7A2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02221-1", "protein_name": "Cytochrome c oxidase subunit 6A2, mitochondrial", "gene_name": "COX6A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUV8-1", "protein_name": "GEL complex subunit OPTI", "gene_name": "RAB5IF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00403-1", "protein_name": "Cytochrome c oxidase subunit 2", "gene_name": "MT-CO2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10176-1", "protein_name": "Cytochrome c oxidase subunit 8A, mitochondrial", "gene_name": "COX8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12074-1", "protein_name": "Cytochrome c oxidase subunit 6A1, mitochondrial", "gene_name": "COX6A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14854-1", "protein_name": "Cytochrome c oxidase subunit 6B1", "gene_name": "COX6B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z7K0-1", "protein_name": "COX assembly mitochondrial protein homolog", "gene_name": "CMC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96MF6-1", "protein_name": "Coenzyme Q-binding protein COQ10 homolog A, mitochondrial", "gene_name": "COQ10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14061-1", "protein_name": "Cytochrome c oxidase copper chaperone", "gene_name": "COX17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10606-1", "protein_name": "Cytochrome c oxidase subunit 5B, mitochondrial", "gene_name": "COX5B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y241-1", "protein_name": "HIG1 domain family member 1A, mitochondrial", "gene_name": "HIGD1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6UWS5-1", "protein_name": "Protein PET117 homolog, mitochondrial", "gene_name": "PET117", "tax_name": "Human" }, { "uniprot_canonical_ac": "A0PJW6-1", "protein_name": "Transmembrane protein 223", "gene_name": "TMEM223", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q8N5G0", "url": "https://www.uniprot.org/uniprotkb/Q8N5G0" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.28199844", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 47 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Human mitochondrial cytochrome c oxidase assembly factor COX18 acts transiently as a membrane insertase within the subunit 2 maturation module.", "journal": "The Journal of biological chemistry", "date": "2017", "authors": "Bourens M, Barrientos A", "reference": { "type": "PubMed", "id": "28330871", "url": "https://pubmed.ncbi.nlm.nih.gov/28330871" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8N5G0-1", "protein_name": "Small integral membrane protein 20", "gene_name": "SMIM20", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43819-1", "protein_name": "Cytochrome c oxidase assembly factor SCO2", "gene_name": "SCO2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20674-1", "protein_name": "Cytochrome c oxidase subunit 5A, mitochondrial", "gene_name": "COX5A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13073-1", "protein_name": "Cytochrome c oxidase subunit 4 isoform 1, mitochondrial", "gene_name": "COX4I1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P0S2-1", "protein_name": "Cytochrome c oxidase assembly protein COX16 homolog, mitochondrial", "gene_name": "COX16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15954-1", "protein_name": "Cytochrome c oxidase subunit 7C, mitochondrial", "gene_name": "COX7C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5JTJ3-1", "protein_name": "Cytochrome c oxidase assembly factor 6 homolog", "gene_name": "COA6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H8M1-1", "protein_name": "Coenzyme Q-binding protein COQ10 homolog B, mitochondrial", "gene_name": "COQ10B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BVV7-1", "protein_name": "Mitochondrial import inner membrane translocase subunit Tim21", "gene_name": "TIMM21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86WW8-1", "protein_name": "Cytochrome c oxidase assembly factor 5", "gene_name": "COA5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5RI15-1", "protein_name": "Cytochrome c oxidase assembly protein COX20, mitochondrial", "gene_name": "COX20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z4L0-1", "protein_name": "Cytochrome c oxidase subunit 8C, mitochondrial", "gene_name": "COX8C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6N1-1", "protein_name": "Cytochrome c oxidase assembly protein COX11, mitochondrial", "gene_name": "COX11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q49B96-1", "protein_name": "Cytochrome c oxidase assembly protein COX19", "gene_name": "COX19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09669-1", "protein_name": "Cytochrome c oxidase subunit 6C", "gene_name": "COX6C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BW72-1", "protein_name": "HIG1 domain family member 2A, mitochondrial", "gene_name": "HIGD2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00483-1", "protein_name": "Cytochrome c oxidase subunit FA4", "gene_name": "COXFA4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BSH4-1", "protein_name": "Translational activator of cytochrome c oxidase 1", "gene_name": "TACO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0DJ07-1", "protein_name": "Protein PET100 homolog, mitochondrial", "gene_name": "PET100", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9GZY4-1", "protein_name": "Cytochrome c oxidase assembly factor 1 homolog", "gene_name": "COA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14406-1", "protein_name": "Cytochrome c oxidase subunit 7A2, mitochondrial", "gene_name": "COX7A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24310-1", "protein_name": "Cytochrome c oxidase subunit 7A1, mitochondrial", "gene_name": "COX7A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24311-1", "protein_name": "Cytochrome c oxidase subunit 7B, mitochondrial", "gene_name": "COX7B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6YFQ2-1", "protein_name": "Cytochrome c oxidase subunit 6B2", "gene_name": "COX6B2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7KZN9-1", "protein_name": "Heme A synthase COX15", "gene_name": "COX15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N8Q8-1", "protein_name": "Cytochrome c oxidase assembly protein COX18, mitochondrial", "gene_name": "COX18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q53S58-1", "protein_name": "Transmembrane protein 177", "gene_name": "TMEM177", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00395-1", "protein_name": "Cytochrome c oxidase subunit 1", "gene_name": "MT-CO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15526-1", "protein_name": "Surfeit locus protein 1", "gene_name": "SURF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00414-1", "protein_name": "Cytochrome c oxidase subunit 3", "gene_name": "MT-CO3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96I36-1", "protein_name": "Cytochrome c oxidase assembly protein COX14", "gene_name": "COX14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96KJ9-1", "protein_name": "Cytochrome c oxidase subunit 4 isoform 2, mitochondrial", "gene_name": "COX4I2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2R0-1", "protein_name": "Cytochrome c oxidase assembly factor 3 homolog, mitochondrial", "gene_name": "COA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75880-1", "protein_name": "Cytochrome c oxidase assembly factor SCO1", "gene_name": "SCO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14548-1", "protein_name": "Cytochrome c oxidase subunit 7A2-like, mitochondrial", "gene_name": "COX7A2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02221-1", "protein_name": "Cytochrome c oxidase subunit 6A2, mitochondrial", "gene_name": "COX6A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUV8-1", "protein_name": "GEL complex subunit OPTI", "gene_name": "RAB5IF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00403-1", "protein_name": "Cytochrome c oxidase subunit 2", "gene_name": "MT-CO2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10176-1", "protein_name": "Cytochrome c oxidase subunit 8A, mitochondrial", "gene_name": "COX8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12074-1", "protein_name": "Cytochrome c oxidase subunit 6A1, mitochondrial", "gene_name": "COX6A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14854-1", "protein_name": "Cytochrome c oxidase subunit 6B1", "gene_name": "COX6B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z7K0-1", "protein_name": "COX assembly mitochondrial protein homolog", "gene_name": "CMC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96MF6-1", "protein_name": "Coenzyme Q-binding protein COQ10 homolog A, mitochondrial", "gene_name": "COQ10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14061-1", "protein_name": "Cytochrome c oxidase copper chaperone", "gene_name": "COX17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10606-1", "protein_name": "Cytochrome c oxidase subunit 5B, mitochondrial", "gene_name": "COX5B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y241-1", "protein_name": "HIG1 domain family member 1A, mitochondrial", "gene_name": "HIGD1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6UWS5-1", "protein_name": "Protein PET117 homolog, mitochondrial", "gene_name": "PET117", "tax_name": "Human" }, { "uniprot_canonical_ac": "A0PJW6-1", "protein_name": "Transmembrane protein 223", "gene_name": "TMEM223", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q8N5G0", "url": "https://www.uniprot.org/uniprotkb/Q8N5G0" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.28330871", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 48 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The mitochondrial TMEM177 associates with COX20 during COX2 biogenesis.", "journal": "Biochimica et biophysica acta. Molecular cell research", "date": "2018", "authors": "Lorenzi I, Oeljeklaus S, Aich A, Ronsor C, Callegari S, Dudek J, Warscheid B, Dennerlein S, Rehling P", "reference": { "type": "PubMed", "id": "29154948", "url": "https://pubmed.ncbi.nlm.nih.gov/29154948" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8N5G0-1", "protein_name": "Small integral membrane protein 20", "gene_name": "SMIM20", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43819-1", "protein_name": "Cytochrome c oxidase assembly factor SCO2", "gene_name": "SCO2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20674-1", "protein_name": "Cytochrome c oxidase subunit 5A, mitochondrial", "gene_name": "COX5A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13073-1", "protein_name": "Cytochrome c oxidase subunit 4 isoform 1, mitochondrial", "gene_name": "COX4I1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P0S2-1", "protein_name": "Cytochrome c oxidase assembly protein COX16 homolog, mitochondrial", "gene_name": "COX16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15954-1", "protein_name": "Cytochrome c oxidase subunit 7C, mitochondrial", "gene_name": "COX7C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5JTJ3-1", "protein_name": "Cytochrome c oxidase assembly factor 6 homolog", "gene_name": "COA6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H8M1-1", "protein_name": "Coenzyme Q-binding protein COQ10 homolog B, mitochondrial", "gene_name": "COQ10B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BVV7-1", "protein_name": "Mitochondrial import inner membrane translocase subunit Tim21", "gene_name": "TIMM21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86WW8-1", "protein_name": "Cytochrome c oxidase assembly factor 5", "gene_name": "COA5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5RI15-1", "protein_name": "Cytochrome c oxidase assembly protein COX20, mitochondrial", "gene_name": "COX20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z4L0-1", "protein_name": "Cytochrome c oxidase subunit 8C, mitochondrial", "gene_name": "COX8C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6N1-1", "protein_name": "Cytochrome c oxidase assembly protein COX11, mitochondrial", "gene_name": "COX11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q49B96-1", "protein_name": "Cytochrome c oxidase assembly protein COX19", "gene_name": "COX19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09669-1", "protein_name": "Cytochrome c oxidase subunit 6C", "gene_name": "COX6C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BW72-1", "protein_name": "HIG1 domain family member 2A, mitochondrial", "gene_name": "HIGD2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00483-1", "protein_name": "Cytochrome c oxidase subunit FA4", "gene_name": "COXFA4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BSH4-1", "protein_name": "Translational activator of cytochrome c oxidase 1", "gene_name": "TACO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0DJ07-1", "protein_name": "Protein PET100 homolog, mitochondrial", "gene_name": "PET100", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9GZY4-1", "protein_name": "Cytochrome c oxidase assembly factor 1 homolog", "gene_name": "COA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14406-1", "protein_name": "Cytochrome c oxidase subunit 7A2, mitochondrial", "gene_name": "COX7A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24310-1", "protein_name": "Cytochrome c oxidase subunit 7A1, mitochondrial", "gene_name": "COX7A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24311-1", "protein_name": "Cytochrome c oxidase subunit 7B, mitochondrial", "gene_name": "COX7B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6YFQ2-1", "protein_name": "Cytochrome c oxidase subunit 6B2", "gene_name": "COX6B2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7KZN9-1", "protein_name": "Heme A synthase COX15", "gene_name": "COX15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N8Q8-1", "protein_name": "Cytochrome c oxidase assembly protein COX18, mitochondrial", "gene_name": "COX18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q53S58-1", "protein_name": "Transmembrane protein 177", "gene_name": "TMEM177", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00395-1", "protein_name": "Cytochrome c oxidase subunit 1", "gene_name": "MT-CO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15526-1", "protein_name": "Surfeit locus protein 1", "gene_name": "SURF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00414-1", "protein_name": "Cytochrome c oxidase subunit 3", "gene_name": "MT-CO3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96I36-1", "protein_name": "Cytochrome c oxidase assembly protein COX14", "gene_name": "COX14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96KJ9-1", "protein_name": "Cytochrome c oxidase subunit 4 isoform 2, mitochondrial", "gene_name": "COX4I2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2R0-1", "protein_name": "Cytochrome c oxidase assembly factor 3 homolog, mitochondrial", "gene_name": "COA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75880-1", "protein_name": "Cytochrome c oxidase assembly factor SCO1", "gene_name": "SCO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14548-1", "protein_name": "Cytochrome c oxidase subunit 7A2-like, mitochondrial", "gene_name": "COX7A2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02221-1", "protein_name": "Cytochrome c oxidase subunit 6A2, mitochondrial", "gene_name": "COX6A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUV8-1", "protein_name": "GEL complex subunit OPTI", "gene_name": "RAB5IF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00403-1", "protein_name": "Cytochrome c oxidase subunit 2", "gene_name": "MT-CO2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10176-1", "protein_name": "Cytochrome c oxidase subunit 8A, mitochondrial", "gene_name": "COX8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12074-1", "protein_name": "Cytochrome c oxidase subunit 6A1, mitochondrial", "gene_name": "COX6A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14854-1", "protein_name": "Cytochrome c oxidase subunit 6B1", "gene_name": "COX6B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z7K0-1", "protein_name": "COX assembly mitochondrial protein homolog", "gene_name": "CMC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96MF6-1", "protein_name": "Coenzyme Q-binding protein COQ10 homolog A, mitochondrial", "gene_name": "COQ10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14061-1", "protein_name": "Cytochrome c oxidase copper chaperone", "gene_name": "COX17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10606-1", "protein_name": "Cytochrome c oxidase subunit 5B, mitochondrial", "gene_name": "COX5B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y241-1", "protein_name": "HIG1 domain family member 1A, mitochondrial", "gene_name": "HIGD1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6UWS5-1", "protein_name": "Protein PET117 homolog, mitochondrial", "gene_name": "PET117", "tax_name": "Human" }, { "uniprot_canonical_ac": "A0PJW6-1", "protein_name": "Transmembrane protein 223", "gene_name": "TMEM223", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q8N5G0", "url": "https://www.uniprot.org/uniprotkb/Q8N5G0" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.29154948", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 48 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", 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}, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Effect of the neuropeptide phoenixin and its receptor GPR173 during folliculogenesis.", "journal": "Reproduction (Cambridge, England)", "date": "2019-07", "authors": "Nguyen Xuan Phuoc, Nakamura Tomoko, Osuka Satoko, Bayasula Bayasula, Nakanishi Natsuki, Kasahara Yukiyo, Muraoka Ayako, Hayashi Shotaro, Nagai Takashi, Murase Tomohiko, Goto Maki, Iwase Akira, Kikkawa Fumitaka", "reference": { "type": "PubMed", "id": "30933929", "url": "https://pubmed.ncbi.nlm.nih.gov/30933929" }, "referenced_glycans": [], "referenced_proteins": [ { 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "HIGD2A is Required for Assembly of the COX3 Module of Human Mitochondrial Complex IV.", "journal": "Molecular & cellular proteomics : MCP", "date": "2020", "authors": "Hock DH, Reljic B, Ang CS, Muellner-Wong L, Mountford HS, Compton AG, Ryan MT, Thorburn DR, Stroud DA", "reference": { "type": "PubMed", "id": "32317297", "url": "https://pubmed.ncbi.nlm.nih.gov/32317297" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8N5G0-1", "protein_name": "Small integral membrane protein 20", "gene_name": "SMIM20", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43819-1", "protein_name": "Cytochrome c oxidase assembly factor SCO2", "gene_name": "SCO2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20674-1", "protein_name": "Cytochrome c oxidase subunit 5A, mitochondrial", "gene_name": "COX5A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13073-1", "protein_name": "Cytochrome c oxidase subunit 4 isoform 1, mitochondrial", "gene_name": "COX4I1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P0S2-1", "protein_name": "Cytochrome c oxidase assembly protein COX16 homolog, mitochondrial", "gene_name": "COX16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15954-1", "protein_name": "Cytochrome c oxidase subunit 7C, mitochondrial", "gene_name": "COX7C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H8M1-1", "protein_name": "Coenzyme Q-binding protein COQ10 homolog B, mitochondrial", "gene_name": "COQ10B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BVV7-1", "protein_name": "Mitochondrial import inner membrane 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"Q9BW72-1", "protein_name": "HIG1 domain family member 2A, mitochondrial", "gene_name": "HIGD2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00483-1", "protein_name": "Cytochrome c oxidase subunit FA4", "gene_name": "COXFA4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BSH4-1", "protein_name": "Translational activator of cytochrome c oxidase 1", "gene_name": "TACO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0DJ07-1", "protein_name": "Protein PET100 homolog, mitochondrial", "gene_name": "PET100", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9GZY4-1", "protein_name": "Cytochrome c oxidase assembly factor 1 homolog", "gene_name": "COA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14406-1", "protein_name": "Cytochrome c oxidase subunit 7A2, mitochondrial", "gene_name": "COX7A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24310-1", "protein_name": "Cytochrome c oxidase subunit 7A1, mitochondrial", "gene_name": "COX7A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24311-1", "protein_name": "Cytochrome c oxidase subunit 7B, mitochondrial", "gene_name": "COX7B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6YFQ2-1", "protein_name": "Cytochrome c oxidase subunit 6B2", "gene_name": "COX6B2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7KZN9-1", "protein_name": "Heme A synthase COX15", "gene_name": "COX15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N8Q8-1", "protein_name": "Cytochrome c oxidase assembly protein COX18, mitochondrial", "gene_name": "COX18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q53S58-1", "protein_name": "Transmembrane protein 177", "gene_name": "TMEM177", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00395-1", "protein_name": "Cytochrome c oxidase subunit 1", "gene_name": "MT-CO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15526-1", "protein_name": "Surfeit locus protein 1", "gene_name": "SURF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00414-1", "protein_name": "Cytochrome c oxidase subunit 3", "gene_name": "MT-CO3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96I36-1", "protein_name": "Cytochrome c oxidase assembly protein COX14", "gene_name": "COX14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96KJ9-1", "protein_name": "Cytochrome c oxidase subunit 4 isoform 2, mitochondrial", "gene_name": "COX4I2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2R0-1", "protein_name": "Cytochrome c oxidase assembly factor 3 homolog, mitochondrial", "gene_name": "COA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75880-1", "protein_name": "Cytochrome c oxidase assembly factor SCO1", "gene_name": "SCO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14548-1", "protein_name": "Cytochrome c oxidase subunit 7A2-like, mitochondrial", "gene_name": "COX7A2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02221-1", "protein_name": "Cytochrome c oxidase subunit 6A2, mitochondrial", "gene_name": "COX6A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUV8-1", "protein_name": "GEL complex subunit OPTI", "gene_name": "RAB5IF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00403-1", "protein_name": "Cytochrome c oxidase subunit 2", "gene_name": "MT-CO2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10176-1", "protein_name": "Cytochrome c oxidase subunit 8A, mitochondrial", "gene_name": "COX8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12074-1", "protein_name": "Cytochrome c oxidase subunit 6A1, mitochondrial", "gene_name": "COX6A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14854-1", "protein_name": "Cytochrome c oxidase subunit 6B1", "gene_name": "COX6B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z7K0-1", "protein_name": "COX assembly mitochondrial protein homolog", "gene_name": "CMC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96MF6-1", "protein_name": "Coenzyme Q-binding protein COQ10 homolog A, mitochondrial", "gene_name": 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], "record_id": "pubmed.32317297", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 47 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], 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"total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Distinct Roles of Mitochondrial HIGD1A and HIGD2A in Respiratory Complex and Supercomplex Biogenesis.", "journal": "Cell reports", "date": "2020", "authors": "Timon-Gomez A, Garlich J, Stuart RA, Ugalde C, Barrientos A", "reference": { "type": "PubMed", "id": "32375044", "url": "https://pubmed.ncbi.nlm.nih.gov/32375044" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8N5G0-1", "protein_name": "Small integral membrane protein 20", "gene_name": "SMIM20", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43819-1", "protein_name": "Cytochrome c oxidase assembly factor SCO2", "gene_name": "SCO2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20674-1", "protein_name": "Cytochrome c oxidase subunit 5A, mitochondrial", "gene_name": "COX5A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13073-1", "protein_name": "Cytochrome c oxidase subunit 4 isoform 1, mitochondrial", "gene_name": "COX4I1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P0S2-1", "protein_name": "Cytochrome c oxidase assembly protein COX16 homolog, mitochondrial", "gene_name": "COX16", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15954-1", "protein_name": "Cytochrome c oxidase subunit 7C, mitochondrial", "gene_name": "COX7C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H8M1-1", "protein_name": "Coenzyme Q-binding protein COQ10 homolog B, mitochondrial", "gene_name": "COQ10B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BVV7-1", "protein_name": "Mitochondrial import inner membrane translocase subunit Tim21", "gene_name": "TIMM21", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86WW8-1", "protein_name": "Cytochrome c oxidase assembly factor 5", "gene_name": "COA5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5RI15-1", "protein_name": "Cytochrome c oxidase assembly protein COX20, mitochondrial", "gene_name": "COX20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z4L0-1", "protein_name": "Cytochrome c oxidase subunit 8C, mitochondrial", "gene_name": "COX8C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6N1-1", "protein_name": "Cytochrome c oxidase assembly protein COX11, mitochondrial", "gene_name": "COX11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q49B96-1", "protein_name": "Cytochrome c oxidase assembly protein COX19", "gene_name": "COX19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09669-1", "protein_name": "Cytochrome c oxidase subunit 6C", "gene_name": "COX6C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BW72-1", "protein_name": "HIG1 domain family member 2A, mitochondrial", "gene_name": "HIGD2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00483-1", "protein_name": "Cytochrome c oxidase subunit FA4", "gene_name": "COXFA4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BSH4-1", "protein_name": "Translational activator of cytochrome c oxidase 1", "gene_name": "TACO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0DJ07-1", "protein_name": "Protein PET100 homolog, mitochondrial", "gene_name": "PET100", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9GZY4-1", "protein_name": "Cytochrome c oxidase assembly factor 1 homolog", "gene_name": "COA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14406-1", "protein_name": "Cytochrome c oxidase subunit 7A2, mitochondrial", "gene_name": "COX7A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24310-1", "protein_name": "Cytochrome c oxidase subunit 7A1, mitochondrial", "gene_name": "COX7A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24311-1", "protein_name": "Cytochrome c oxidase subunit 7B, mitochondrial", "gene_name": "COX7B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6YFQ2-1", "protein_name": "Cytochrome c oxidase subunit 6B2", "gene_name": "COX6B2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7KZN9-1", "protein_name": "Heme A synthase COX15", "gene_name": "COX15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N8Q8-1", "protein_name": "Cytochrome c oxidase assembly protein COX18, mitochondrial", "gene_name": "COX18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q53S58-1", "protein_name": "Transmembrane protein 177", "gene_name": "TMEM177", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00395-1", "protein_name": "Cytochrome c oxidase subunit 1", "gene_name": "MT-CO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15526-1", "protein_name": "Surfeit locus protein 1", "gene_name": "SURF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00414-1", "protein_name": "Cytochrome c oxidase subunit 3", "gene_name": "MT-CO3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96I36-1", "protein_name": "Cytochrome c oxidase assembly protein COX14", "gene_name": "COX14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96KJ9-1", "protein_name": "Cytochrome c oxidase subunit 4 isoform 2, mitochondrial", "gene_name": "COX4I2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2R0-1", "protein_name": "Cytochrome c oxidase assembly factor 3 homolog, mitochondrial", "gene_name": "COA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75880-1", "protein_name": "Cytochrome c oxidase assembly factor SCO1", "gene_name": "SCO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14548-1", "protein_name": "Cytochrome c oxidase subunit 7A2-like, mitochondrial", "gene_name": "COX7A2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02221-1", "protein_name": "Cytochrome c oxidase subunit 6A2, mitochondrial", "gene_name": "COX6A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUV8-1", "protein_name": "GEL complex subunit OPTI", "gene_name": "RAB5IF", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00403-1", "protein_name": "Cytochrome c oxidase subunit 2", "gene_name": "MT-CO2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10176-1", "protein_name": "Cytochrome c oxidase subunit 8A, mitochondrial", "gene_name": "COX8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12074-1", "protein_name": "Cytochrome c oxidase subunit 6A1, mitochondrial", "gene_name": "COX6A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14854-1", "protein_name": "Cytochrome c oxidase subunit 6B1", "gene_name": "COX6B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z7K0-1", "protein_name": "COX assembly mitochondrial protein homolog", "gene_name": "CMC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96MF6-1", "protein_name": "Coenzyme Q-binding protein COQ10 homolog A, mitochondrial", "gene_name": "COQ10A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14061-1", "protein_name": "Cytochrome c oxidase copper chaperone", "gene_name": "COX17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10606-1", "protein_name": "Cytochrome c oxidase subunit 5B, mitochondrial", "gene_name": "COX5B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y241-1", "protein_name": "HIG1 domain family member 1A, mitochondrial", "gene_name": "HIGD1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6UWS5-1", "protein_name": "Protein PET117 homolog, mitochondrial", "gene_name": "PET117", "tax_name": "Human" }, { "uniprot_canonical_ac": "A0PJW6-1", "protein_name": 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"count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Coordination of metal center biogenesis in human cytochrome c oxidase.", "journal": "Nature communications", "date": "2022-06-24", "authors": "N\u00fdvltov\u00e1 Eva, Dietz Jonathan V, Seravalli Javier, Khalimonchuk Oleh, Barrientos Antoni", "reference": { "type": "PubMed", "id": "35750769", "url": "https://pubmed.ncbi.nlm.nih.gov/35750769" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8N5G0-1", "protein_name": "Small integral membrane protein 20", "gene_name": "SMIM20", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43819-1", "protein_name": "Cytochrome c oxidase assembly factor SCO2", "gene_name": "SCO2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20674-1", "protein_name": "Cytochrome c oxidase subunit 5A, mitochondrial", "gene_name": "COX5A", "tax_name": "Human" }, { "uniprot_canonical_ac": 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{ "uniprot_canonical_ac": "P00395-1", "protein_name": "Cytochrome c oxidase subunit 1", "gene_name": "MT-CO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15526-1", "protein_name": "Surfeit locus protein 1", "gene_name": "SURF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P00414-1", "protein_name": "Cytochrome c oxidase subunit 3", "gene_name": "MT-CO3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96I36-1", "protein_name": "Cytochrome c oxidase assembly protein COX14", "gene_name": "COX14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96KJ9-1", "protein_name": "Cytochrome c oxidase subunit 4 isoform 2, mitochondrial", "gene_name": "COX4I2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2R0-1", "protein_name": "Cytochrome c oxidase assembly factor 3 homolog, mitochondrial", "gene_name": "COA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75880-1", "protein_name": "Cytochrome c oxidase assembly factor SCO1", "gene_name": "SCO1", "tax_name": 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"count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The human RPS4 paralogue on Yq11.223 encodes a structurally conserved ribosomal protein and is preferentially expressed during spermatogenesis.", "journal": "BMC molecular biology", "date": "2010", "authors": "Lopes AM, Miguel RN, Sargent CA, Ellis PJ, Amorim A, Affara NA", "reference": { "type": "PubMed", "id": "20459660", "url": "https://pubmed.ncbi.nlm.nih.gov/20459660" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8TD47-1", "protein_name": "Small ribosomal subunit protein eS4, Y isoform 2", "gene_name": "RPS4Y2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q8TD47", "url": "https://www.uniprot.org/uniprotkb/Q8TD47" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], 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Invest.", "date": "1996", "authors": "Arden SD, Roep BO, Neophytou PI, Usac EF, Duinkerken G, de Vries RR, Hutton JC", "reference": { "type": "PubMed", "id": "8567980", "url": "https://pubmed.ncbi.nlm.nih.gov/8567980" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q92665-1", "protein_name": "Small ribosomal subunit protein mS31", "gene_name": "MRPS31", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q61733-1", "protein_name": "Small ribosomal subunit protein mS31", "gene_name": "Mrps31", "tax_name": "Mouse" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q92665", "url": "https://www.uniprot.org/uniprotkb/Q92665" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.8567980", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": 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Immunopeptidome.", "journal": "Cancer immunology research", "date": "2019-12", "authors": "Oh Claire Y, Klatt Martin G, Bourne Christopher, Dao Tao, Dacek Megan M, Brea Elliott J, Mun Sung Soo, Chang Aaron Y, Korontsvit Tatyana, Scheinberg David A", "reference": { "type": "PubMed", "id": "31540894", "url": "https://pubmed.ncbi.nlm.nih.gov/31540894" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q96HG1-1", "protein_name": "Small integral membrane protein 10", "gene_name": "SMIM10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12834-1", "protein_name": "Cell division cycle protein 20 homolog", "gene_name": "CDC20", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30533-1", "protein_name": "Alpha-2-macroglobulin receptor-associated protein", "gene_name": "LRPAP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99590-1", "protein_name": "Protein SCAF11", "gene_name": "SCAF11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93009-1", "protein_name": "Ubiquitin C-terminal hydrolase 7", "gene_name": "USP7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12864-1", "protein_name": "Cadherin-17", "gene_name": "CDH17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08238-1", "protein_name": "Heat shock protein HSP 90-beta", "gene_name": "HSP90AB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36941-1", "protein_name": "Tumor necrosis factor receptor superfamily member 3", "gene_name": "LTBR", "tax_name": "Human" }, { "uniprot_canonical_ac": "P13284-1", "protein_name": "Gamma-interferon-inducible lysosomal thiol reductase", "gene_name": "IFI30", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UGJ0-1", "protein_name": "5'-AMP-activated protein kinase subunit gamma-2", "gene_name": "PRKAG2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q96HG1", "url": "https://www.uniprot.org/uniprotkb/Q96HG1" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.31540894", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 10 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Cloning and characterization of a novel small monomeric GTPase, RasL10B, with tumor suppressor potential.", "journal": "Biotechnology letters", "date": "2006", "authors": "Zou H, Hu L, Li J, Zhan S, Cao K", "reference": { "type": "PubMed", "id": "17028781", "url": "https://pubmed.ncbi.nlm.nih.gov/17028781" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q96S79-1", "protein_name": "Ras-like protein family member 10B", "gene_name": "RASL10B", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q96S79", "url": "https://www.uniprot.org/uniprotkb/Q96S79" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.17028781", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", 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}, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": 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Cell Biol.", "date": "2007", "authors": "Rybkin II, Kim MS, Bezprozvannaya S, Qi X, Richardson JA, Plato CF, Hill JA, Bassel-Duby R, Olson EN", "reference": { "type": "PubMed", "id": "17984325", "url": "https://pubmed.ncbi.nlm.nih.gov/17984325" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q96S79-1", "protein_name": "Ras-like protein family member 10B", "gene_name": "RASL10B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8BG17-1", "protein_name": "Nucleolar protein 12", "gene_name": "Nol12", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q5SSG5-1", "protein_name": "Ras-like protein family member 10B", "gene_name": "Rasl10b", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q80TJ1-1", "protein_name": "Calcium-dependent secretion activator 1", "gene_name": "Cadps", "tax_name": "Mouse" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q96S79", "url": "https://www.uniprot.org/uniprotkb/Q96S79" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.17984325", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Cloning and characterization of a human orthologue of testis-specific succinyl CoA:3-oxo acid CoA transferase (Scot-t) cDNA.", "journal": "Mol. 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Reprod.", "date": "2002", "authors": "Tanaka H, Kohroki J, Iguchi N, Onishi M, Nishimune Y", "reference": { "type": "PubMed", "id": "11756565", "url": "https://pubmed.ncbi.nlm.nih.gov/11756565" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9BYC2-1", "protein_name": "Succinyl-CoA:3-ketoacid coenzyme A transferase 2, mitochondrial", "gene_name": "OXCT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24752-1", "protein_name": "Acetyl-CoA acetyltransferase, mitochondrial", "gene_name": "ACAT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55809-1", "protein_name": "Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial", "gene_name": "OXCT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02338-1", "protein_name": "D-beta-hydroxybutyrate dehydrogenase, mitochondrial", "gene_name": "BDH1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9BYC2", "url": 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Genet.", "date": "2002", "authors": "Suzuki Hiromu, Gabrielson Edward, Chen Wei, Anbazhagan Ramaswamy, van Engeland Manon, Weijenberg Matty P, Herman James G, Baylin Stephen B", "reference": { "type": "PubMed", "id": "11992124", "url": "https://pubmed.ncbi.nlm.nih.gov/11992124" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9BYH1-1", "protein_name": "Seizure 6-like protein", "gene_name": "SEZ6L", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9BYH1", "url": "https://www.uniprot.org/uniprotkb/Q9BYH1" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.11992124", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ 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newly diagnosed glioblastoma.", "journal": "Nature", "date": "2019-01", "authors": "Hilf Norbert, Kuttruff-Coqui Sabrina, Frenzel Katrin, Bukur Valesca, Stevanovi\u0107 Stefan, Gouttefangeas C\u00e9cile, Platten Michael, Tabatabai Ghazaleh, Dutoit Valerie, van der Burg Sjoerd H, Thor Straten Per, Mart\u00ednez-Ricarte Francisco, Ponsati Berta, Okada Hideho, Lassen Ulrik, Admon Arie, Ottensmeier Christian H, Ulges Alexander, Kreiter Sebastian, von Deimling Andreas, Skardelly Marco, Migliorini Denis, Kroep Judith R, Idorn Manja, Rodon Jordi, Pir\u00f3 Jordi, Poulsen Hans S, Shraibman Bracha, McCann Katy, Mendrzyk Regina, L\u00f6wer Martin, Stieglbauer Monika, Britten Cedrik M, Capper David, Welters Marij J P, Sahuquillo Juan, Kiesel Katharina, Derhovanessian Evelyna, Rusch Elisa, Bunse Lukas, Song Colette, Heesch Sandra, Wagner Claudia, Kemmer-Br\u00fcck Alexandra, Ludwig J\u00f6rg, Castle John C, Schoor Oliver, Tadmor Arbel D, Green Edward, Fritsche Jens, Meyer Miriam, Pawlowski Nina, Dorner Sonja, Hoffgaard Franziska, R\u00f6ssler Bernhard, Maurer Dominik, Weinschenk Toni, Reinhardt Carsten, Huber Christoph, Rammensee Hans-Georg, Singh-Jasuja Harpreet, Sahin Ugur, Dietrich Pierre-Yves, Wick Wolfgang", "reference": { "type": "PubMed", "id": "30568303", "url": "https://pubmed.ncbi.nlm.nih.gov/30568303" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9BYH1-1", "protein_name": "Seizure 6-like protein", "gene_name": "SEZ6L", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15466-1", "protein_name": "Alpha-2,8-sialyltransferase 8E", "gene_name": "ST8SIA5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17036-1", "protein_name": "Zinc finger protein 3", "gene_name": "ZNF3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6A5-1", "protein_name": "Transforming acidic coiled-coil-containing protein 3", "gene_name": "TACC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NFZ3-1", "protein_name": "Neuroligin-4, Y-linked", "gene_name": "NLGN4Y", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N0W4-1", "protein_name": "Neuroligin-4, X-linked", "gene_name": "NLGN4X", "tax_name": "Human" }, { "uniprot_canonical_ac": "P48058-1", "protein_name": "Glutamate receptor 4", "gene_name": "GRIA4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P0S3-1", "protein_name": "ORM1-like protein 1", "gene_name": "ORMDL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5F6-1", "protein_name": "Protocadherin gamma-C5", "gene_name": "PCDHGC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13516-1", "protein_name": "Oligodendrocyte transcription factor 2", "gene_name": "OLIG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15392-1", "protein_name": "Baculoviral IAP repeat-containing protein 5", "gene_name": "BIRC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P43003-1", "protein_name": "Excitatory amino acid transporter 1", "gene_name": "SLC1A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IZT6-1", "protein_name": "Abnormal spindle-like microcephaly-associated protein", "gene_name": "ASPM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23471-1", "protein_name": "Receptor-type tyrosine-protein phosphatase zeta", "gene_name": "PTPRZ1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27544-1", "protein_name": "Ceramide synthase 1", "gene_name": "CERS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78508-1", "protein_name": "ATP-sensitive inward rectifier potassium channel 10", "gene_name": "KCNJ10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y620-1", "protein_name": "DNA repair and recombination protein RAD54B", "gene_name": "RAD54B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H6L2-1", "protein_name": "Transmembrane protein 231", "gene_name": "TMEM231", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95864-1", "protein_name": "Acyl-CoA 6-desaturase", "gene_name": "FADS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13683-1", "protein_name": "Integrin alpha-7", "gene_name": "ITGA7", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15540-1", "protein_name": "Fatty acid-binding protein, brain", "gene_name": "FABP7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06730-1", "protein_name": "Eukaryotic translation initiation factor 4E", "gene_name": "EIF4E", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6AI12-1", "protein_name": "Ankyrin repeat domain-containing protein 40", "gene_name": "ANKRD40", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NTJ3-1", "protein_name": "Structural maintenance of chromosomes protein 4", "gene_name": "SMC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NX05-1", "protein_name": "Constitutive coactivator of PPAR-gamma-like protein 2", "gene_name": "FAM120C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16527-1", "protein_name": "Cysteine and glycine-rich protein 2", "gene_name": "CSRP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51784-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 11", "gene_name": "USP11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13491-1", "protein_name": "Neuronal membrane glycoprotein M6-b", "gene_name": "GPM6B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H583-1", "protein_name": "HEAT repeat-containing protein 1", "gene_name": "HEATR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H4M7-1", "protein_name": "Pleckstrin homology domain-containing family A member 4", "gene_name": "PLEKHA4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96GW7-1", "protein_name": "Brevican core protein", "gene_name": "BCAN", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43164-1", "protein_name": "E3 ubiquitin-protein ligase Praja-2", "gene_name": "PJA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13003-1", "protein_name": "Glutamate receptor ionotropic, kainate 3", "gene_name": "GRIK3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z7G8-1", "protein_name": 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"count": 37 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { 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"referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9H1N7-1", "protein_name": "Adenosine 3'-phospho 5'-phosphosulfate transporter 2", "gene_name": "SLC35B3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TB61-1", "protein_name": "Adenosine 3'-phospho 5'-phosphosulfate transporter 1", "gene_name": "SLC35B2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9H1N7", "url": "https://www.uniprot.org/uniprotkb/Q9H1N7" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.20978009", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", 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"glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "[Specifically up-regulated non-coding RNA gene HULC in tumor cell lines and its effects on the expression of neighboring gene SLC35B3].", "journal": "Zhonghua yi xue za zhi", "date": "2010", "authors": "Li D, Song YM, Zhan QM", "reference": { "type": "PubMed", "id": "21211351", "url": "https://pubmed.ncbi.nlm.nih.gov/21211351" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9H1N7-1", "protein_name": "Adenosine 3'-phospho 5'-phosphosulfate transporter 2", "gene_name": "SLC35B3", "tax_name": "Human" } ], 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cytochrome P-450 gene devoid of introns.", "journal": "Genomics", "date": "1999", "authors": "Gafvels M, Olin M, Chowdhary BP, Raudsepp T, Andersson U, Persson B, Jansson M, Bjorkhem I, Eggertsen G", "reference": { "type": "PubMed", "id": "10051404", "url": "https://pubmed.ncbi.nlm.nih.gov/10051404" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9Y2P5-1", "protein_name": "Long-chain fatty acid transport protein 5", "gene_name": "SLC27A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15596-1", "protein_name": "Nuclear receptor coactivator 2", "gene_name": "NCOA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17516-1", "protein_name": "Aldo-keto reductase family 1 member C4", "gene_name": "AKR1C4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q04828-1", "protein_name": "Aldo-keto reductase family 1 member C1", "gene_name": "AKR1C1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42330-1", "protein_name": "Aldo-keto reductase family 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"HSD17B4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96RI1-3", "protein_name": "Bile acid receptor", "gene_name": "NR1H4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14975-1", "protein_name": "Long-chain fatty acid transport protein 2", "gene_name": "SLC27A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14032-1", "protein_name": "Bile acid-CoA:amino acid N-acyltransferase", "gene_name": "BAAT", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15788-1", "protein_name": "Nuclear receptor coactivator 1", "gene_name": "NCOA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14734-1", "protein_name": "Acyl-coenzyme A thioesterase 8", "gene_name": "ACOT8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95342-1", "protein_name": "Bile salt export pump", "gene_name": "ABCB11", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9Y2P5", "url": "https://www.uniprot.org/uniprotkb/Q9Y2P5" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.10051404", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 25 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", 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chemistry", "date": "1999", "authors": "Jones JM, Nau K, Geraghty MT, Erdmann R, Gould SJ", "reference": { "type": "PubMed", "id": "10092594", "url": "https://pubmed.ncbi.nlm.nih.gov/10092594" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9Y2P5-1", "protein_name": "Long-chain fatty acid transport protein 5", "gene_name": "SLC27A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15596-1", "protein_name": "Nuclear receptor coactivator 2", "gene_name": "NCOA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17516-1", "protein_name": "Aldo-keto reductase family 1 member C4", "gene_name": "AKR1C4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q04828-1", "protein_name": "Aldo-keto reductase family 1 member C1", "gene_name": "AKR1C1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42330-1", "protein_name": "Aldo-keto reductase family 1 member C3", "gene_name": "AKR1C3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52895-1", "protein_name": "Aldo-keto reductase family 1 member C2", "gene_name": "AKR1C2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41903-1", "protein_name": "Peroxisomal acyl-coenzyme A thioester hydrolase 1", "gene_name": "TES1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P19793-1", "protein_name": "Retinoic acid receptor RXR-alpha", "gene_name": "RXRA", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75881-1", "protein_name": "Cytochrome P450 7B1", "gene_name": "CYP7B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22680-1", "protein_name": "Cytochrome P450 7A1", "gene_name": "CYP7A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNU6-1", "protein_name": "7-alpha-hydroxycholest-4-en-3-one 12-alpha-hydroxylase", "gene_name": "CYP8B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02318-1", "protein_name": "Sterol 26-hydroxylase, mitochondrial", "gene_name": "CYP27A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8VHK0-1", "protein_name": "Acyl-coenzyme A thioesterase 8", "gene_name": "Acot8", "tax_name": "Rat" }, { "uniprot_canonical_ac": "Q9H2F3-1", "protein_name": "3 beta-hydroxysteroid dehydrogenase type 7", "gene_name": "HSD3B7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99424-1", "protein_name": "Peroxisomal acyl-coenzyme A oxidase 2", "gene_name": "ACOX2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51857-1", "protein_name": "Aldo-keto reductase family 1 member D1", "gene_name": "AKR1D1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHK6-1", "protein_name": "Alpha-methylacyl-CoA racemase", "gene_name": "AMACR", "tax_name": "Human" }, { "uniprot_canonical_ac": "P43155-1", "protein_name": "Carnitine O-acetyltransferase", "gene_name": "CRAT", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51659-1", "protein_name": "Peroxisomal multifunctional enzyme type 2", "gene_name": "HSD17B4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96RI1-3", "protein_name": "Bile acid receptor", "gene_name": "NR1H4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKG9-1", "protein_name": "Peroxisomal carnitine O-octanoyltransferase", "gene_name": "CROT", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14975-1", "protein_name": "Long-chain fatty acid transport protein 2", "gene_name": "SLC27A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14032-1", "protein_name": "Bile acid-CoA:amino acid N-acyltransferase", "gene_name": "BAAT", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15788-1", "protein_name": "Nuclear receptor coactivator 1", "gene_name": "NCOA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14734-1", "protein_name": "Acyl-coenzyme A thioesterase 8", "gene_name": "ACOT8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95342-1", "protein_name": "Bile salt export pump", "gene_name": "ABCB11", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15254-1", "protein_name": "Peroxisomal acyl-coenzyme A oxidase 3", "gene_name": "ACOX3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NUZ1-1", "protein_name": "Acyl-coenzyme A oxidase-like protein", "gene_name": "ACOXL", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9Y2P5", "url": "https://www.uniprot.org/uniprotkb/Q9Y2P5" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.10092594", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 28 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": 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"tax_name": "Human" }, { "uniprot_canonical_ac": "Q86UW2-1", "protein_name": "Organic solute transporter subunit beta", "gene_name": "SLC51B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19793-1", "protein_name": "Retinoic acid receptor RXR-alpha", "gene_name": "RXRA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86UW1-1", "protein_name": "Organic solute transporter subunit alpha", "gene_name": "SLC51A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPD5-1", "protein_name": "Solute carrier organic anion transporter family member 1B3", "gene_name": "SLCO1B3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6L6-1", "protein_name": "Solute carrier organic anion transporter family member 1B1", "gene_name": "SLCO1B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46721-1", "protein_name": "Solute carrier organic anion transporter family member 1A2", "gene_name": "SLCO1A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51161-1", "protein_name": 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"uniprot_canonical_ac": "O95342-1", "protein_name": "Bile salt export pump", "gene_name": "ABCB11", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9Y2P5", "url": "https://www.uniprot.org/uniprotkb/Q9Y2P5" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.10334993", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 18 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { 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{ "uniprot_canonical_ac": "Q9H2F3-1", "protein_name": "3 beta-hydroxysteroid dehydrogenase type 7", "gene_name": "HSD3B7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51857-1", "protein_name": "Aldo-keto reductase family 1 member D1", "gene_name": "AKR1D1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHK6-1", "protein_name": "Alpha-methylacyl-CoA racemase", "gene_name": "AMACR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9WVK8-1", "protein_name": "Cholesterol 24-hydroxylase", "gene_name": "Cyp46a1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "O14975-1", "protein_name": "Long-chain fatty acid transport protein 2", "gene_name": "SLC27A2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9Y2P5", "url": "https://www.uniprot.org/uniprotkb/Q9Y2P5" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.10377398", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 14 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": 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McGuinness MC, Watkins PA", "reference": { "type": "PubMed", "id": "10479480", "url": "https://pubmed.ncbi.nlm.nih.gov/10479480" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9Y2P5-1", "protein_name": "Long-chain fatty acid transport protein 5", "gene_name": "SLC27A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15596-1", "protein_name": "Nuclear receptor coactivator 2", "gene_name": "NCOA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17516-1", "protein_name": "Aldo-keto reductase family 1 member C4", "gene_name": "AKR1C4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q04828-1", "protein_name": "Aldo-keto reductase family 1 member C1", "gene_name": "AKR1C1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P42330-1", "protein_name": "Aldo-keto reductase family 1 member C3", "gene_name": "AKR1C3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52895-1", "protein_name": "Aldo-keto reductase family 1 member C2", "gene_name": "AKR1C2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19793-1", "protein_name": "Retinoic acid receptor RXR-alpha", "gene_name": "RXRA", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75881-1", "protein_name": "Cytochrome P450 7B1", "gene_name": "CYP7B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22680-1", "protein_name": "Cytochrome P450 7A1", "gene_name": "CYP7A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NYL5-1", "protein_name": "24-hydroxycholesterol 7-alpha-hydroxylase", "gene_name": "CYP39A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNU6-1", "protein_name": "7-alpha-hydroxycholest-4-en-3-one 12-alpha-hydroxylase", "gene_name": "CYP8B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02318-1", "protein_name": "Sterol 26-hydroxylase, mitochondrial", "gene_name": "CYP27A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6A2-1", "protein_name": "Cholesterol 24-hydroxylase", "gene_name": "CYP46A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H2F3-1", "protein_name": "3 beta-hydroxysteroid dehydrogenase type 7", "gene_name": "HSD3B7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99424-1", "protein_name": "Peroxisomal acyl-coenzyme A oxidase 2", "gene_name": "ACOX2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51857-1", "protein_name": "Aldo-keto reductase family 1 member D1", "gene_name": "AKR1D1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UHK6-1", "protein_name": "Alpha-methylacyl-CoA racemase", "gene_name": "AMACR", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51659-1", "protein_name": "Peroxisomal multifunctional enzyme type 2", "gene_name": "HSD17B4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96RI1-3", "protein_name": "Bile acid receptor", "gene_name": "NR1H4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14975-1", "protein_name": "Long-chain fatty acid transport protein 2", "gene_name": "SLC27A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14032-1", "protein_name": "Bile acid-CoA:amino acid N-acyltransferase", "gene_name": "BAAT", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15788-1", "protein_name": "Nuclear receptor coactivator 1", "gene_name": "NCOA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14734-1", "protein_name": "Acyl-coenzyme A thioesterase 8", "gene_name": "ACOT8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95342-1", "protein_name": "Bile salt export pump", "gene_name": "ABCB11", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9Y2P5", "url": "https://www.uniprot.org/uniprotkb/Q9Y2P5" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.10479480", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 24 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A novel human hepatic organic anion transporting polypeptide (OATP2). Identification of a liver-specific human organic anion transporting polypeptide and identification of rat and human hydroxymethylglutaryl-CoA reductase inhibitor transporters.", "journal": "The Journal of biological chemistry", "date": "1999", "authors": "Hsiang B, Zhu Y, Wang Z, Wu Y, Sasseville V, Yang WP, Kirchgessner TG", "reference": { "type": "PubMed", "id": "10601278", "url": "https://pubmed.ncbi.nlm.nih.gov/10601278" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9Y2P5-1", "protein_name": "Long-chain fatty acid transport protein 5", "gene_name": "SLC27A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15596-1", "protein_name": "Nuclear receptor coactivator 2", "gene_name": "NCOA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14973-1", "protein_name": "Hepatic sodium/bile acid cotransporter", "gene_name": "SLC10A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86UW2-1", "protein_name": "Organic solute transporter subunit beta", "gene_name": "SLC51B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08684-1", "protein_name": "Cytochrome P450 3A4", "gene_name": "CYP3A4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19793-1", "protein_name": "Retinoic acid receptor RXR-alpha", "gene_name": "RXRA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01185-1", "protein_name": "Vasopressin-neurophysin 2-copeptin", "gene_name": "AVP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36021-1", "protein_name": "Monocarboxylate transporter 8", "gene_name": "SLC16A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86UW1-1", "protein_name": "Organic solute transporter subunit alpha", "gene_name": "SLC51A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15166-1", "protein_name": "Serum paraoxonase/lactonase 3", "gene_name": "PON3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPD5-1", "protein_name": "Solute carrier organic anion transporter family member 1B3", "gene_name": "SLCO1B3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92959-1", "protein_name": "Solute carrier organic anion transporter family member 2A1", "gene_name": "SLCO2A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NYB5-1", "protein_name": "Solute carrier organic anion transporter family member 1C1", "gene_name": "SLCO1C1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZQN7-1", "protein_name": "Solute carrier organic anion transporter family member 4C1", "gene_name": "SLCO4C1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BD0-1", "protein_name": "Solute carrier organic anion transporter family member 4A1", "gene_name": "SLCO4A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6L6-1", "protein_name": "Solute carrier organic anion transporter family member 1B1", "gene_name": "SLCO1B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P08183-1", "protein_name": "ATP-dependent translocase ABCB1", "gene_name": "ABCB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27169-1", "protein_name": "Serum paraoxonase/arylesterase 1", "gene_name": "PON1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46721-1", "protein_name": "Solute carrier organic anion transporter family member 1A2", "gene_name": "SLCO1A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94956-1", "protein_name": "Solute carrier organic anion transporter family member 2B1", "gene_name": "SLCO2B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51161-1", "protein_name": "Gastrotropin", "gene_name": "FABP6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02768-1", "protein_name": "Albumin", "gene_name": "ALB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96RI1-3", "protein_name": "Bile acid receptor", "gene_name": "NR1H4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NSY2-1", "protein_name": "StAR-related lipid transfer protein 5", "gene_name": "STARD5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12908-1", "protein_name": "Ileal sodium/bile acid cotransporter", "gene_name": "SLC10A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35503-1", "protein_name": "UDP-glucuronosyltransferase 1A3", "gene_name": "UGT1A3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14032-1", "protein_name": "Bile acid-CoA:amino acid N-acyltransferase", "gene_name": "BAAT", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15788-1", "protein_name": "Nuclear receptor coactivator 1", "gene_name": "NCOA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92887-1", "protein_name": "ATP-binding cassette sub-family C member 2", "gene_name": "ABCC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15438-1", "protein_name": "ATP-binding cassette sub-family C member 3", "gene_name": "ABCC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95342-1", "protein_name": "Bile salt export pump", "gene_name": "ABCB11", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9Y2P5", "url": "https://www.uniprot.org/uniprotkb/Q9Y2P5" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.10601278", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 31 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": 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alpha-methylacyl-CoA racemase cause adult-onset sensory motor neuropathy.", "journal": "Nature genetics", "date": "2000", "authors": "Ferdinandusse S, Denis S, Clayton PT, Graham A, Rees JE, Allen JT, McLean BN, Brown AY, Vreken P, Waterham HR, Wanders RJ", "reference": { "type": "PubMed", "id": "10655068", "url": "https://pubmed.ncbi.nlm.nih.gov/10655068" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9Y2P5-1", "protein_name": "Long-chain fatty acid transport protein 5", "gene_name": "SLC27A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15596-1", "protein_name": "Nuclear receptor coactivator 2", "gene_name": "NCOA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17516-1", "protein_name": "Aldo-keto reductase family 1 member C4", "gene_name": "AKR1C4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q04828-1", "protein_name": "Aldo-keto reductase family 1 member C1", "gene_name": "AKR1C1", "tax_name": "Human" }, { 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}, { "uniprot_canonical_ac": "P19793-1", "protein_name": "Retinoic acid receptor RXR-alpha", "gene_name": "RXRA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P01185-1", "protein_name": "Vasopressin-neurophysin 2-copeptin", "gene_name": "AVP", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36021-1", "protein_name": "Monocarboxylate transporter 8", "gene_name": "SLC16A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86UW1-1", "protein_name": "Organic solute transporter subunit alpha", "gene_name": "SLC51A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPD5-1", "protein_name": "Solute carrier organic anion transporter family member 1B3", "gene_name": "SLCO1B3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92959-1", "protein_name": "Solute carrier organic anion transporter family member 2A1", "gene_name": "SLCO2A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NYB5-1", "protein_name": "Solute carrier organic anion transporter family member 1C1", "gene_name": "SLCO1C1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZQN7-1", "protein_name": "Solute carrier organic anion transporter family member 4C1", "gene_name": "SLCO4C1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96BD0-1", "protein_name": "Solute carrier organic anion transporter family member 4A1", "gene_name": "SLCO4A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6L6-1", "protein_name": "Solute carrier organic anion transporter family member 1B1", "gene_name": "SLCO1B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46721-1", "protein_name": "Solute carrier organic anion transporter family member 1A2", "gene_name": "SLCO1A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94956-1", "protein_name": "Solute carrier organic anion transporter family member 2B1", "gene_name": "SLCO2B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51161-1", "protein_name": "Gastrotropin", "gene_name": "FABP6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02768-1", "protein_name": "Albumin", "gene_name": "ALB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96RI1-3", "protein_name": "Bile acid receptor", "gene_name": "NR1H4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NSY2-1", "protein_name": "StAR-related lipid transfer protein 5", "gene_name": "STARD5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12908-1", "protein_name": "Ileal sodium/bile acid cotransporter", "gene_name": "SLC10A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14032-1", "protein_name": "Bile acid-CoA:amino acid N-acyltransferase", "gene_name": "BAAT", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15788-1", "protein_name": "Nuclear receptor coactivator 1", "gene_name": "NCOA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15438-1", "protein_name": "ATP-binding cassette sub-family C member 3", "gene_name": "ABCC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95342-1", "protein_name": "Bile salt export pump", "gene_name": "ABCB11", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9Y2P5", "url": "https://www.uniprot.org/uniprotkb/Q9Y2P5" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.11159893", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 25 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Human bile salt export pump promoter is transactivated by the farnesoid X receptor/bile acid receptor.", "journal": "The Journal of biological chemistry", "date": "2001", "authors": "Ananthanarayanan M, Balasubramanian N, Makishima M, Mangelsdorf DJ, Suchy FJ", "reference": { "type": "PubMed", "id": "11387316", "url": "https://pubmed.ncbi.nlm.nih.gov/11387316" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9Y2P5-1", "protein_name": "Long-chain fatty acid transport protein 5", "gene_name": "SLC27A5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15596-1", "protein_name": "Nuclear receptor coactivator 2", "gene_name": "NCOA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14973-1", "protein_name": "Hepatic sodium/bile acid cotransporter", "gene_name": "SLC10A1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86UW2-1", "protein_name": "Organic solute transporter subunit beta", "gene_name": "SLC51B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19793-1", "protein_name": "Retinoic acid receptor RXR-alpha", "gene_name": "RXRA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86UW1-1", "protein_name": "Organic solute transporter subunit alpha", "gene_name": "SLC51A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPD5-1", "protein_name": "Solute carrier organic anion transporter family member 1B3", "gene_name": "SLCO1B3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6L6-1", "protein_name": "Solute carrier organic anion transporter family member 1B1", "gene_name": "SLCO1B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46721-1", "protein_name": "Solute carrier organic anion transporter family member 1A2", "gene_name": "SLCO1A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51161-1", "protein_name": "Gastrotropin", "gene_name": "FABP6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P02768-1", "protein_name": "Albumin", "gene_name": "ALB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96RI1-3", "protein_name": "Bile acid receptor", "gene_name": "NR1H4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NSY2-1", "protein_name": "StAR-related lipid transfer protein 5", "gene_name": "STARD5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12908-1", "protein_name": "Ileal sodium/bile acid cotransporter", "gene_name": "SLC10A2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14032-1", "protein_name": "Bile acid-CoA:amino acid N-acyltransferase", "gene_name": "BAAT", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15788-1", "protein_name": "Nuclear receptor coactivator 1", "gene_name": "NCOA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15438-1", "protein_name": "ATP-binding cassette sub-family C member 3", "gene_name": "ABCC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95342-1", "protein_name": "Bile salt export pump", "gene_name": "ABCB11", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9Y2P5", "url": "https://www.uniprot.org/uniprotkb/Q9Y2P5" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.11387316", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 18 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] } ]