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Biol.", "date": "2004", "authors": "Fang Li, Yan Yibing, Komuves Laszlo G, Yonkovich Shirlee, Sullivan Carol M, Stringer Bradley, Galbraith Sarah, Lokker Nathalie A, Hwang S Stuart, Nurden Paquita, Phillips David R, Giese Neill A", "reference": { "type": "PubMed", "id": "15061151", "url": "https://pubmed.ncbi.nlm.nih.gov/15061151" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8CI19-1", "protein_name": "Platelet-derived growth factor C", "gene_name": "Pdgfc", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9NRA1-1", "protein_name": "Platelet-derived growth factor C", "gene_name": "PDGFC", "tax_name": "Human" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q8CI19", "url": "https://www.uniprot.org/uniprotkb/Q8CI19" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.15061151", "abstract": "", "glycosylation": [], 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[] } ] }, { "title": "Linkage between elevated PDGF-C expression and myocardial fibrogenesis in coxsackievirus B3-induced chronic myocarditis.", "journal": "European heart journal", "date": "2005-04", "authors": "Yang Decheng, Qiu Dexin", "reference": { "type": "PubMed", "id": "15757957", "url": "https://pubmed.ncbi.nlm.nih.gov/15757957" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8CI19-1", "protein_name": "Platelet-derived growth factor C", "gene_name": "Pdgfc", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q8CI19", "url": "https://www.uniprot.org/uniprotkb/Q8CI19" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.15757957", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", 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"count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Structural requirements for activation of latent platelet-derived growth factor CC by tissue plasminogen activator.", "journal": "J. Biol. Chem.", "date": "2005", "authors": "Fredriksson L, Ehnman M, Fieber C, Eriksson U", "reference": { "type": "PubMed", "id": "15911618", "url": "https://pubmed.ncbi.nlm.nih.gov/15911618" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8CI19-1", "protein_name": "Platelet-derived growth factor C", "gene_name": "Pdgfc", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9NRA1-1", "protein_name": "Platelet-derived growth factor C", "gene_name": "PDGFC", "tax_name": "Human" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q8CI19", "url": "https://www.uniprot.org/uniprotkb/Q8CI19" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "mutagenesis": [ { "start_pos": 231, "end_pos": 231, "sequence_org": "R", "sequence_mut": "A", "comment": "Essential for cleavage by PLAT.", "evidence": [ { "database": "UniProtKB", "id": "Q9NRA1", "url": 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Immunol.", "date": "2006", "authors": "Ingram Jennifer L, Antao-Menezes Aurita, Mangum James B, Lyght Otis, Lee Patty J, Elias Jack A, Bonner James C", "reference": { "type": "PubMed", "id": "16951379", "url": "https://pubmed.ncbi.nlm.nih.gov/16951379" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8CI19-1", "protein_name": "Platelet-derived growth factor C", "gene_name": "Pdgfc", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q8CI19", "url": "https://www.uniprot.org/uniprotkb/Q8CI19" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.16951379", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "PDGF-C controls proliferation and is down-regulated by retinoic acid in mouse embryonic palatal mesenchymal cells.", "journal": "Birth Defects Res. 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Toxicol.", "date": "2006", "authors": "Han Jing, Xiao Ying, Lin Jiuxiang, Li Yong", "reference": { "type": "PubMed", "id": "17066417", "url": "https://pubmed.ncbi.nlm.nih.gov/17066417" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8CI19-1", "protein_name": "Platelet-derived growth factor C", "gene_name": "Pdgfc", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q8CI19", "url": "https://www.uniprot.org/uniprotkb/Q8CI19" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.17066417", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": 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[] } ] }, { "title": "Twinkle overexpression prevents cardiac rupture after myocardial infarction by alleviating impaired mitochondrial biogenesis.", "journal": "American journal of physiology. 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Mol. Biol.", "date": "2003", "authors": "Kibardin A V, Mirkina I I, Baranova E V, Zakeyeva I R, Georgiev G P, Kiselev S L", "reference": { "type": "PubMed", "id": "12559914", "url": "https://pubmed.ncbi.nlm.nih.gov/12559914" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8VCS0-1", "protein_name": "N-acetylmuramoyl-L-alanine amidase", "gene_name": "Pglyrp2", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q8VCS0", "url": "https://www.uniprot.org/uniprotkb/Q8VCS0" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.12559914", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A mammalian peptidoglycan recognition protein with N-acetylmuramoyl-L-alanine amidase activity.", "journal": "Biochem. Biophys. Res. Commun.", "date": "2003", "authors": "Gelius Eva, Persson Carina, Karlsson Jenny, Steiner H\u00e5kan", "reference": { "type": "PubMed", "id": "12821140", "url": "https://pubmed.ncbi.nlm.nih.gov/12821140" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8VCS0-1", "protein_name": "N-acetylmuramoyl-L-alanine amidase", "gene_name": "Pglyrp2", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q8VCS0", "url": "https://www.uniprot.org/uniprotkb/Q8VCS0" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.12821140", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { 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Peptidoglycan Recognition Proteins (Pglyrps) at the Ocular Surface: Bacterial Keratitis in Gene-Targeted Mice Deficient in Pglyrp-2, -3 and -4.", "journal": "PloS one", "date": "2015", "authors": "Gowda RN, Redfern R, Frikeche J, Pinglay S, Foster JW, Lema C, Cope L, Chakravarti S", "reference": { "type": "PubMed", "id": "26332373", "url": "https://pubmed.ncbi.nlm.nih.gov/26332373" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8VCS0-1", "protein_name": "N-acetylmuramoyl-L-alanine amidase", "gene_name": "Pglyrp2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q0VB07-1", "protein_name": "Peptidoglycan recognition protein 4", "gene_name": "Pglyrp4", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "A1A547-1", "protein_name": "Peptidoglycan recognition protein 3", "gene_name": "Pglyrp3", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q8VCS0", "url": 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differentiation and pathogenesis of rheumatoid arthritis.", "journal": "Immunology", "date": "2021", "authors": "Lin Y, Huang M, Wang S, You X, Zhang L, Chen Y", "reference": { "type": "PubMed", "id": "33421113", "url": "https://pubmed.ncbi.nlm.nih.gov/33421113" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9CQY7-1", "protein_name": "Monocyte to macrophage differentiation factor", "gene_name": "Mmd", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q15546-1", "protein_name": "Monocyte to macrophage differentiation factor", "gene_name": "MMD", "tax_name": "Human" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q9CQY7", "url": "https://www.uniprot.org/uniprotkb/Q9CQY7" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.33421113", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], 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Clin. Pathol.", "date": "2004", "authors": "Oniscu A, Sphyris N, Morris R G, Bader S, Harrison D J", "reference": { "type": "PubMed", "id": "15113856", "url": "https://pubmed.ncbi.nlm.nih.gov/15113856" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9JJP2-1", "protein_name": "Tumor protein p73", "gene_name": "Tp73; Trp73", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q9JJP2", "url": "https://www.uniprot.org/uniprotkb/Q9JJP2" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.15113856", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": 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Eye Res.", "date": "1993", "authors": "Groshan K R, Norton J C, Craft C M, Travis G H", "reference": { "type": "PubMed", "id": "8405193", "url": "https://pubmed.ncbi.nlm.nih.gov/8405193" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9QW08-1", "protein_name": "Phosducin", "gene_name": "Pdc", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "Q9QW08", "url": "https://www.uniprot.org/uniprotkb/Q9QW08" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.8405193", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": 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Mol. Genet.", "date": "1997", "authors": "Strom T M, Francis F, Lorenz B, B\u00f6ddrich A, Econs M J, Lehrach H, Meitinger T", "reference": { "type": "PubMed", "id": "9063736", "url": "https://pubmed.ncbi.nlm.nih.gov/9063736" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P70669-1", "protein_name": "Phosphate-regulating neutral endopeptidase PHEX", "gene_name": "Phex", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P97355-1", "protein_name": "Spermine synthase", "gene_name": "Sms", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "P70669", "url": "https://www.uniprot.org/uniprotkb/P70669" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.9063736", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Pex/PEX tissue distribution and evidence for a deletion in the 3' region of the Pex gene in X-linked hypophosphatemic mice.", "journal": "J. 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Invest.", "date": "1997", "authors": "Beck L, Soumounou Y, Martel J, Krishnamurthy G, Gauthier C, Goodyer C G, Tenenhouse H S", "reference": { "type": "PubMed", "id": "9077527", "url": "https://pubmed.ncbi.nlm.nih.gov/9077527" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P70669-1", "protein_name": "Phosphate-regulating neutral endopeptidase PHEX", "gene_name": "Phex", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P78562-1", "protein_name": "Phosphate-regulating neutral endopeptidase PHEX", "gene_name": "PHEX", "tax_name": "Human" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "P70669", "url": "https://www.uniprot.org/uniprotkb/P70669" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.9077527", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": 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"field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "PLD3 and PLD4 synthesize S,S-BMP, a key phospholipid enabling lipid degradation in lysosomes.", "journal": "Cell", "date": "2024-11-27", "authors": "Singh Shubham, Dransfeld Ulrich E, Ambaw Yohannes A, Lopez-Scarim Joshua, Farese Robert V, Walther Tobias C", "reference": { "type": "PubMed", "id": "39423811", "url": "https://pubmed.ncbi.nlm.nih.gov/39423811" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O35405-1", "protein_name": "5'-3' exonuclease PLD3", "gene_name": "Pld3", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8BG07-1", "protein_name": "5'-3' exonuclease PLD4", "gene_name": "Pld4", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q96BZ4-1", "protein_name": "5'-3' exonuclease PLD4", "gene_name": "PLD4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IV08-1", "protein_name": "5'-3' exonuclease PLD3", "gene_name": "PLD3", "tax_name": "Human" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "O35405", "url": "https://www.uniprot.org/uniprotkb/O35405" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "mutagenesis": [ { "start_pos": 214, "end_pos": 214, "sequence_org": "H", "sequence_mut": "A", "comment": "Loss of exonuclease and phosphatase activities toward ssDNA; when associated with A-414. Loss of (S,S)-BMP synthase activity. No effect on protein expression or localization to lysosomes.", "evidence": [ { "database": "UniProtKB", "id": "Q96BZ4", "url": "https://www.uniprot.org/uniprotkb/Q96BZ4" }, { "database": "PubMed", "id": "39423811", "url": "https://pubmed.ncbi.nlm.nih.gov/39423811" }, { "database": "PubMed", "id": "38537643", "url": "https://pubmed.ncbi.nlm.nih.gov/38537643" } ], "uniprot_canonical_ac": "Q96BZ4-1" }, { "start_pos": 216, "end_pos": 216, "sequence_org": "K", "sequence_mut": "A", "comment": "Loss of (S,S)-BMP synthase activity. No effect on protein expression or localization to lysosomes.", "evidence": [ { "database": "UniProtKB", "id": "Q96BZ4", "url": "https://www.uniprot.org/uniprotkb/Q96BZ4" }, { "database": "PubMed", "id": "39423811", "url": "https://pubmed.ncbi.nlm.nih.gov/39423811" } ], "uniprot_canonical_ac": "Q96BZ4-1" }, { "start_pos": 221, "end_pos": 221, "sequence_org": "D", "sequence_mut": "A", "comment": "Loss of (S,S)-BMP synthase activity. No effect on protein expression or localization to lysosomes. Loss of protein stability; when associated with A-435.", "evidence": [ { "database": "UniProtKB", "id": "Q96BZ4", "url": "https://www.uniprot.org/uniprotkb/Q96BZ4" }, { "database": "PubMed", "id": "39423811", "url": "https://pubmed.ncbi.nlm.nih.gov/39423811" }, { "database": "PubMed", "id": "38537643", "url": "https://pubmed.ncbi.nlm.nih.gov/38537643" } ], "uniprot_canonical_ac": "Q96BZ4-1" }, { "start_pos": 426, "end_pos": 426, "sequence_org": "V", "sequence_mut": "A", "comment": "Loss of (S,S)-BMP synthase activity. No effect on protein expression or localization to lysosomes.", "evidence": [ { "database": "UniProtKB", "id": "Q96BZ4", "url": "https://www.uniprot.org/uniprotkb/Q96BZ4" }, { "database": "PubMed", "id": "39423811", "url": "https://pubmed.ncbi.nlm.nih.gov/39423811" } ], "uniprot_canonical_ac": "Q96BZ4-1" }, { "start_pos": 428, "end_pos": 428, "sequence_org": "H", "sequence_mut": "A", "comment": "Loss of exonuclease and phosphatase activities; when associated with A-414. Loss of (S,S)-BMP synthase activity. No effect on protein expression or localization to lysosomes.", "evidence": [ { "database": "UniProtKB", "id": "Q96BZ4", "url": "https://www.uniprot.org/uniprotkb/Q96BZ4" }, { "database": "PubMed", "id": "39423811", "url": "https://pubmed.ncbi.nlm.nih.gov/39423811" }, { "database": "PubMed", "id": "38537643", "url": "https://pubmed.ncbi.nlm.nih.gov/38537643" } ], "uniprot_canonical_ac": "Q96BZ4-1" }, { "start_pos": 435, "end_pos": 435, "sequence_org": "E", "sequence_mut": "A", "comment": "Loss of (S,S)-BMP synthase activity. No effect on protein expression or localization to lysosomes. Loss of protein stability; when associated with A-221.", "evidence": [ { "database": "UniProtKB", "id": "Q96BZ4", "url": "https://www.uniprot.org/uniprotkb/Q96BZ4" }, { "database": "PubMed", "id": "39423811", "url": "https://pubmed.ncbi.nlm.nih.gov/39423811" }, { "database": "PubMed", "id": "38537643", "url": "https://pubmed.ncbi.nlm.nih.gov/38537643" } ], "uniprot_canonical_ac": "Q96BZ4-1" }, { "start_pos": 435, "end_pos": 435, "sequence_org": "E", "sequence_mut": "D", "comment": "No effect on (S,S)-BMP synthase activity, protein expression or localization to lysosomes.", "evidence": [ { "database": "UniProtKB", "id": "Q96BZ4", "url": "https://www.uniprot.org/uniprotkb/Q96BZ4" }, { "database": "PubMed", "id": "39423811", "url": "https://pubmed.ncbi.nlm.nih.gov/39423811" } ], "uniprot_canonical_ac": "Q96BZ4-1" }, { "start_pos": 201, "end_pos": 201, "sequence_org": "H", "sequence_mut": "A", "comment": "Loss of (S,S)-BMP synthase activity. No effect on protein expression or localization to lysosomes.", "evidence": [ { "database": "UniProtKB", "id": "Q8IV08", "url": "https://www.uniprot.org/uniprotkb/Q8IV08" }, { "database": "PubMed", "id": "39423811", "url": "https://pubmed.ncbi.nlm.nih.gov/39423811" } ], "uniprot_canonical_ac": "Q8IV08-1" }, { "start_pos": 203, "end_pos": 203, "sequence_org": "K", "sequence_mut": "A", "comment": "Loss of (S,S)-BMP synthase activity. No effect on protein expression or localization to lysosomes.", "evidence": [ { "database": "UniProtKB", "id": "Q8IV08", "url": "https://www.uniprot.org/uniprotkb/Q8IV08" }, { "database": "PubMed", "id": "39423811", "url": "https://pubmed.ncbi.nlm.nih.gov/39423811" } ], "uniprot_canonical_ac": "Q8IV08-1" }, { "start_pos": 208, "end_pos": 208, "sequence_org": "D", "sequence_mut": "A", "comment": "Loss of (S,S)-BMP synthase activity. No effect on protein expression or localization to lysosomes.", "evidence": [ { "database": "UniProtKB", "id": "Q8IV08", "url": "https://www.uniprot.org/uniprotkb/Q8IV08" }, { "database": "PubMed", "id": "39423811", "url": "https://pubmed.ncbi.nlm.nih.gov/39423811" } ], "uniprot_canonical_ac": "Q8IV08-1" }, { "start_pos": 416, "end_pos": 416, "sequence_org": "H", "sequence_mut": "A", "comment": "Loss of (S,S)-BMP synthase activity. No effect on protein expression or localization to lysosomes.", "evidence": [ { "database": "UniProtKB", "id": "Q8IV08", "url": "https://www.uniprot.org/uniprotkb/Q8IV08" }, { "database": "PubMed", "id": "39423811", "url": "https://pubmed.ncbi.nlm.nih.gov/39423811" } ], "uniprot_canonical_ac": "Q8IV08-1" }, { "start_pos": 418, "end_pos": 418, "sequence_org": "K", "sequence_mut": "A", "comment": "Loss of (S,S)-BMP synthase activity. Loss of exonuclease activity toward ssDNA. No effect on protein expression or localization to lysosomes.", "evidence": [ { "database": "UniProtKB", "id": "Q8IV08", "url": "https://www.uniprot.org/uniprotkb/Q8IV08" }, { "database": "PubMed", "id": "39423811", "url": "https://pubmed.ncbi.nlm.nih.gov/39423811" } ], "uniprot_canonical_ac": "Q8IV08-1" }, { "start_pos": 423, "end_pos": 423, "sequence_org": "E", "sequence_mut": "A", "comment": "Loss of (S,S)-BMP synthase activity. No effect on protein expression or localization to lysosomes. Loss of exonuclease activity toward ssDNA.", "evidence": [ { "database": "UniProtKB", "id": "Q8IV08", "url": "https://www.uniprot.org/uniprotkb/Q8IV08" }, { "database": "PubMed", "id": "37994783", "url": "https://pubmed.ncbi.nlm.nih.gov/37994783" }, { "database": "PubMed", "id": "39423811", "url": "https://pubmed.ncbi.nlm.nih.gov/39423811" } ], "uniprot_canonical_ac": "Q8IV08-1" }, { "start_pos": 423, "end_pos": 423, "sequence_org": "E", "sequence_mut": "D", "comment": "No effect on (S,S)-BMP synthase activity, protein expression or localization to lysosomes.", "evidence": [ { "database": "UniProtKB", "id": "Q8IV08", "url": "https://www.uniprot.org/uniprotkb/Q8IV08" }, { "database": "PubMed", "id": "39423811", "url": "https://pubmed.ncbi.nlm.nih.gov/39423811" } ], "uniprot_canonical_ac": "Q8IV08-1" } ], "record_id": "pubmed.39423811", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Expression of a novel murine phospholipase D homolog coincides with late neuronal development in the forebrain.", "journal": "J. Biol. Chem.", "date": "1998", "authors": "Pedersen K M, Finsen B, Celis J E, Jensen N A", "reference": { "type": "PubMed", "id": "9813063", "url": "https://pubmed.ncbi.nlm.nih.gov/9813063" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O35405-1", "protein_name": "5'-3' exonuclease PLD3", "gene_name": "Pld3", "tax_name": "Mouse" } ], "species": [ { "name": "Mus musculus", "taxid": 10090, "evidence": [ { "database": "UniProtKB", "id": "O35405", "url": "https://www.uniprot.org/uniprotkb/O35405" } ], "common_name": "Mouse", "glygen_name": "Mouse", "reference_species": "Mus musculus [10090]" } ], "record_id": "pubmed.9813063", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] } ]