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Death. Discov.", "date": "2024", "authors": "Bastida-Martinez E., Elias-Arnanz M., Monera-Girona A.J., Garcia-Moreno D., Mulero V., Tyrkalska S.D., Arroyo A.B., Canton-Sandoval J., Bernal-Carrion M.", "reference": { "type": "PubMed", "id": "39209813", "url": "https://pubmed.ncbi.nlm.nih.gov/39209813" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A8M2B5J8-1", "protein_name": "Uncharacterized protein isoform X1", "gene_name": "peds1a", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A0A8M2B5J8", "url": "https://www.uniprot.org/uniprotkb/A0A8M2B5J8" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.39209813", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Zebrafish HERC7c Acts as an Inhibitor of Fish IFN Response.", "journal": "Int. 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Biol.", "date": "2011", "authors": "Zhou Yingsong, Yan Xiaojun, Xu Shanliang, Zhu Peng, He Xianxing, Liu Jianxin", "reference": { "type": "PubMed", "id": "21834959", "url": "https://pubmed.ncbi.nlm.nih.gov/21834959" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q90428-1", "protein_name": "Odorant receptor 115-15", "gene_name": "or70b1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q9I8Z6-1", "protein_name": "Olfactory receptor", "gene_name": "or30bw1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q2PRM2-1", "protein_name": "Olfactory receptor", "gene_name": "or41a2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q2PRA6-1", "protein_name": "Olfactory receptor", "gene_name": "or62a3", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q2PRA7-1", "protein_name": "Odorant receptor 123-1", "gene_name": "or61a1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q2PRB2-1", "protein_name": "Odorant receptor 131-1", 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Biol.", "date": "2003", "authors": "Field Holly A, Ober Elke A, Roeser Tobias, Stainier Didier Y R", "reference": { "type": "PubMed", "id": "12645931", "url": "https://pubmed.ncbi.nlm.nih.gov/12645931" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q98SV0-1", "protein_name": "Selenoprotein Pb", "gene_name": "selenop2; sepp1b", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q98SV0", "url": "https://www.uniprot.org/uniprotkb/Q98SV0" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.12645931", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Characterization of Selenoprotein P cDNA of the Antarctic toothfish Dissostichus mawsoni and its role under cold pressure.", "journal": "Gene", "date": "2018", "authors": "Li Yan, Luo Juntao, Xu Qiongqiong, Hou Yanwen, Jiang Penglei, Sun Yutian, Lu Hanxu, Han Bingshe, Zhang Junfang", "reference": { "type": "PubMed", "id": "29329926", "url": "https://pubmed.ncbi.nlm.nih.gov/29329926" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q98SV0-1", "protein_name": "Selenoprotein Pb", "gene_name": "selenop2; 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Evol.", "date": "2000", "authors": "Chiu C H, Nonaka D, Xue L, Amemiya C T, Wagner G P", "reference": { "type": "PubMed", "id": "11083943", "url": "https://pubmed.ncbi.nlm.nih.gov/11083943" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9DDU0-1", "protein_name": "Homeobox protein Hox-A11a", "gene_name": "hoxa11a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q9DDU1-1", "protein_name": "Homeobox protein Hox-A11b", "gene_name": "hoxa11b", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q9DDU0", "url": "https://www.uniprot.org/uniprotkb/Q9DDU0" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.11083943", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Evolutionary conservation, developmental expression, and genomic mapping of mammalian Twisted gastrulation.", "journal": "Mamm. 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endothelial cells.", "journal": "The FEBS journal", "date": "2018-04", "authors": "Esser Jennifer Susanne, Steiner Rahel Elisabeth, Deckler Meike, Schmitt Hannah, Engert Bianca, Link Sandra, Charlet Anne, Patterson Cam, Bode Christoph, Zhou Qian, Moser Martin", "reference": { "type": "PubMed", "id": "29473997", "url": "https://pubmed.ncbi.nlm.nih.gov/29473997" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9DGH0-1", "protein_name": "Twisted gastrulation protein homolog 1-A", "gene_name": "twsg1a", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q9DGH0", "url": "https://www.uniprot.org/uniprotkb/Q9DGH0" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.29473997", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { 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"evidence": [ { "database": "UniProtKB", "id": "Q9PU58", "url": "https://www.uniprot.org/uniprotkb/Q9PU58" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.31251109", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", 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"Organization and base composition of tilapia Hox genes: implications for the evolution of Hox clusters in fish.", "journal": "Gene", "date": "2005", "authors": "Santini Simona, Bernardi Giorgio", "reference": { "type": "PubMed", "id": "15716008", "url": "https://pubmed.ncbi.nlm.nih.gov/15716008" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9PWL7-1", "protein_name": "Homeobox protein Hox-B10a", "gene_name": "hoxb10a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "P28174-1", "protein_name": "Homeobox protein Hox-C3a", "gene_name": "hoxc3a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q9PWM5-1", "protein_name": "Homeobox protein Hox-C6b", "gene_name": "hoxc6b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q9YGS6-1", "protein_name": "Homeobox protein Hox-C9a", "gene_name": "hoxc9a", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q9PWL7", "url": 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medaka genome and comparison with those of pufferfish and zebrafish genomes.", "journal": "Gene", "date": "2006", "authors": "Kurosawa Gene, Takamatsu Naofumi, Takahashi Masayoshi, Sumitomo Mariko, Sanaka Emi, Yamada Kouji, Nishii Kazuhiro, Matsuda Masaru, Asakawa Shuichi, Ishiguro Hiroshi, Miura Keiji, Kurosawa Yoshikazu, Shimizu Nobuyoshi, Kohara Yuji, Hori Hiroshi", "reference": { "type": "PubMed", "id": "16472944", "url": "https://pubmed.ncbi.nlm.nih.gov/16472944" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9PWL7-1", "protein_name": "Homeobox protein Hox-B10a", "gene_name": "hoxb10a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "P28174-1", "protein_name": "Homeobox protein Hox-C3a", "gene_name": "hoxc3a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q9PWM5-1", "protein_name": "Homeobox protein Hox-C6b", "gene_name": "hoxc6b", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { 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"The duplication of the Hox gene clusters in teleost fishes.", "journal": "Theory Biosci.", "date": "2004", "authors": "Prohaska Sonja J, Stadler Peter F", "reference": { "type": "PubMed", "id": "18202881", "url": "https://pubmed.ncbi.nlm.nih.gov/18202881" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9PWL7-1", "protein_name": "Homeobox protein Hox-B10a", "gene_name": "hoxb10a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "P28174-1", "protein_name": "Homeobox protein Hox-C3a", "gene_name": "hoxc3a", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q9PWL7", "url": "https://www.uniprot.org/uniprotkb/Q9PWL7" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.18202881", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], 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Chem. Biol.", "date": "2016", "authors": "Payumo Alexander Y, McQuade Lindsey E, Walker Whitney J, Yamazoe Sayumi, Chen James K", "reference": { "type": "PubMed", "id": "27376691", "url": "https://pubmed.ncbi.nlm.nih.gov/27376691" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9PWL7-1", "protein_name": "Homeobox protein Hox-B10a", "gene_name": "hoxb10a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M2B7M4-1", "protein_name": "Transcription factor HIVEP2a isoform X1", "gene_name": "hivep2a", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q9PWL7", "url": "https://www.uniprot.org/uniprotkb/Q9PWL7" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.27376691", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The Most Developmentally Truncated Fishes Show Extensive Hox Gene Loss and Miniaturized Genomes.", "journal": "Genome Biol. Evol.", "date": "2018", "authors": "Malmstr\u00f8m Martin, Britz Ralf, Matschiner Michael, T\u00f8rresen Ole K, Hadiaty Renny Kurnia, Yaakob Norsham, Tan Heok Hui, Jakobsen Kjetill Sigurd, Salzburger Walter, R\u00fcber Lukas", "reference": { "type": "PubMed", "id": "29684203", "url": "https://pubmed.ncbi.nlm.nih.gov/29684203" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9PWL7-1", "protein_name": "Homeobox protein Hox-B10a", "gene_name": "hoxb10a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q9YGS6-1", "protein_name": "Homeobox protein Hox-C9a", "gene_name": "hoxc9a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F6NI81-1", "protein_name": "Homeobox protein Hox-C10a isoform X1", "gene_name": "hoxc10a", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q9PWL7", "url": "https://www.uniprot.org/uniprotkb/Q9PWL7" } ], "common_name": "Zebrafish", 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "An atlas of seven zebrafish hox cluster mutants provides insights into sub/neofunctionalization of vertebrate Hox clusters.", "journal": 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Biol.", "date": "2009", "authors": "Kl\u00fcver Nils, Herpin Amaury, Braasch Ingo, Driessle Julia, Schartl Manfred", "reference": { "type": "PubMed", "id": "18992736", "url": "https://pubmed.ncbi.nlm.nih.gov/18992736" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "R4GDP5-1", "protein_name": "Apoptosis inhibitor 5", "gene_name": "api5", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58HU68-1", "protein_name": "WT1 transcription factor b isoform X1", "gene_name": "wt1b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QIB2-1", "protein_name": "Cleavage stimulation factor subunit 3", "gene_name": "cstf3", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "R4GDP5", "url": "https://www.uniprot.org/uniprotkb/R4GDP5" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.18992736", 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Pharmacol.", "date": "2022", "authors": "Winter Matthew J, Ono Yosuke, Ball Jonathan S, Walentinsson Anna, Michaelsson Erik, Tochwin Anna, Scholpp Steffen, Tyler Charles R, Rees Steve, Hetheridge Malcolm J, Bohlooly-Y Mohammad", "reference": { "type": "PubMed", "id": "35548346", "url": "https://pubmed.ncbi.nlm.nih.gov/35548346" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "R4GDP5-1", "protein_name": "Apoptosis inhibitor 5", "gene_name": "api5", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "R4GDP5", "url": "https://www.uniprot.org/uniprotkb/R4GDP5" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.35548346", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A mutation in ZNF513, a putative regulator of photoreceptor development, causes autosomal-recessive retinitis pigmentosa.", "journal": "Am. J. Hum. Genet.", "date": "2010", "authors": "Li L, Nakaya N, Chavali VR, Ma Z, Jiao X, Sieving PA, Riazuddin S, Tomarev SI, Ayyagari R, Riazuddin SA, Hejtmancik JF", "reference": { "type": "PubMed", "id": "20797688", "url": "https://pubmed.ncbi.nlm.nih.gov/20797688" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "R4GDS0-1", "protein_name": "Zinc finger protein 513", "gene_name": "znf513a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q8N8E2-1", "protein_name": "Zinc finger protein 513", "gene_name": "ZNF513", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6PD29-1", "protein_name": "Zinc finger protein 513", "gene_name": "Zfp513; Znf513", "tax_name": "Mouse" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "R4GDS0", "url": "https://www.uniprot.org/uniprotkb/R4GDS0" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": 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}, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Prdm1a and miR-499 act sequentially to restrict Sox6 activity to the fast-twitch muscle lineage in the zebrafish embryo.", "journal": "Development", "date": "2011", "authors": "Wang XinGang, Ono Yosuke, Tan Swee Chuan, Chai Ruth JinFen, Parkin Caroline, Ingham Philip W", "reference": { "type": "PubMed", "id": "21880783", "url": "https://pubmed.ncbi.nlm.nih.gov/21880783" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "R4GDZ5-1", "protein_name": "Myosin, heavy chain 7B, cardiac muscle, beta a", "gene_name": "myh7ba", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB32TT03-1", "protein_name": "Transcription factor SOX-6 isoform X1", "gene_name": "sox6", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "R4GDZ5", "url": "https://www.uniprot.org/uniprotkb/R4GDZ5" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.21880783", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", 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Biol.", "date": "2013", "authors": "Bhuiyan Sharmin Siddique, Kinoshita Shigeharu, Wongwarangkana Chaninya, Asaduzzaman Md, Asakawa Shuichi, Watabe Shugo", "reference": { "type": "PubMed", "id": "24059862", "url": "https://pubmed.ncbi.nlm.nih.gov/24059862" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "R4GDZ5-1", "protein_name": "Myosin, heavy chain 7B, cardiac muscle, beta a", "gene_name": "myh7ba", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "R4GDZ5", "url": "https://www.uniprot.org/uniprotkb/R4GDZ5" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.24059862", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Regulation of the Expression of the Myosin Heavy Chain (MYH) Gene myh14 in Zebrafish Development.", "journal": "Mar. Biotechnol.", "date": "2021", "authors": "Asakawa S., Kinoshita S., Hasan S., Watabe S.", "reference": { "type": "PubMed", "id": "34490548", "url": "https://pubmed.ncbi.nlm.nih.gov/34490548" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "R4GDZ5-1", "protein_name": "Myosin, heavy chain 7B, cardiac muscle, beta a", "gene_name": "myh7ba", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "R4GDZ5", "url": "https://www.uniprot.org/uniprotkb/R4GDZ5" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.34490548", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Unraveling the Molecular Players at the Cholinergic Efferent Synapse of the Zebrafish Lateral Line.", "journal": "J. Neurosci.", "date": "2021", "authors": "Carpaneto Freixas Agust\u00edn E, Moglie Marcelo J, Castagnola Tais, Salatino Lucia, Domene Sabina, Marcovich Irina, Gallino Sofia, Wedemeyer Carolina, Goutman Juan D, Plazas Paola V, Elgoyhen Ana Bel\u00e9n", "reference": { "type": "PubMed", "id": "33203744", "url": "https://pubmed.ncbi.nlm.nih.gov/33203744" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "R4GF05-1", "protein_name": "Neuronal acetylcholine receptor subunit alpha-10a isoform X1", "gene_name": "chrna10a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M2BE84-1", "protein_name": "Small conductance calcium-activated potassium channel protein 1b isoform X1", "gene_name": "kcnn1b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M2BIK5-1", "protein_name": "Small conductance calcium-activated potassium channel protein 1a isoform X1", "gene_name": "kcnn1a", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "R4GF05", "url": "https://www.uniprot.org/uniprotkb/R4GF05" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.33203744", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Peptidomics of the zebrafish Danio rerio: In search for neuropeptides.", "journal": "J. Proteomics", "date": "2017", "authors": "Van Camp Kristien A, Baggerman Geert, Blust Ronny, Husson Steven J", "reference": { "type": "PubMed", "id": "27705817", "url": "https://pubmed.ncbi.nlm.nih.gov/27705817" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "U3JAH8-1", "protein_name": "Galanin peptides-like precursor", "gene_name": "gall", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7FFY9-1", "protein_name": "Somatostatin-2", "gene_name": "sst1.2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QCH5-1", "protein_name": "Proprotein convertase subtilisin/kexin type 1 inhibitor, like precursor", "gene_name": "pcsk1nl", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M2B675-1", "protein_name": "Neuromedin Ba isoform X1", "gene_name": "nmba", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB13AA96-1", "protein_name": "Secretogranin-2a precursor", "gene_name": "scg2a", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "U3JAH8", "url": "https://www.uniprot.org/uniprotkb/U3JAH8" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.27705817", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The repertoire of trace amine G-protein-coupled receptors: large expansion in zebrafish.", "journal": "Mol. Phylogenet. Evol.", "date": "2005", "authors": "Gloriam David E I, Bjarnad\u00f3ttir Th\u00f3ra K, Yan Yi-Lin, Postlethwait John H, Schi\u00f6th Helgi B, Fredriksson Robert", "reference": { "type": "PubMed", "id": "15804416", "url": "https://pubmed.ncbi.nlm.nih.gov/15804416" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "U3JB35-1", "protein_name": "Trace amine associated receptor 14d", "gene_name": "taar14d", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F2Z4S2-1", "protein_name": "Trace amine associated receptor 14i", "gene_name": "taar14i", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "U3JB35", "url": "https://www.uniprot.org/uniprotkb/U3JB35" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.15804416", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Molecular, functional, and gene expression analysis of zebrafish hypoxia-inducible factor-3alpha.", "journal": "Am. J. Physiol. Regul. Integr. Comp. Physiol.", "date": "2012", "authors": "Zhang Peng, Lu Ling, Yao Qing, Li Yun, Zhou Jianfeng, Liu Yunzhang, Duan Cunming", "reference": { "type": "PubMed", "id": "23034716", "url": "https://pubmed.ncbi.nlm.nih.gov/23034716" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "X1WBB9-1", "protein_name": "RNA-binding protein Nova-2", "gene_name": "nova2", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "X1WBB9", "url": "https://www.uniprot.org/uniprotkb/X1WBB9" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.23034716", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The alternative splicing factor Nova2 regulates vascular development and lumen formation.", "journal": "Nat. 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Cell", "date": "2001", "authors": "Lekven A C, Thorpe C J, Waxman J S, Moon R T", "reference": { "type": "PubMed", "id": "11703928", "url": "https://pubmed.ncbi.nlm.nih.gov/11703928" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q90YL8-1", "protein_name": "Protein Wnt", "gene_name": "wnt8-2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "P51028-1", "protein_name": "Protein Wnt-8a", "gene_name": "wnt8a", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q90YL8", "url": "https://www.uniprot.org/uniprotkb/Q90YL8" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.11703928", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "WNT8 and BMP2B co-regulate non-axial mesoderm patterning during zebrafish gastrulation.", "journal": "Dev. Biol.", "date": "2005", "authors": "Ramel Marie-Christine, Buckles Gerri R, Baker Kevin D, Lekven Arne C", "reference": { "type": "PubMed", "id": "16216234", "url": "https://pubmed.ncbi.nlm.nih.gov/16216234" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q90YL8-1", "protein_name": "Protein Wnt", "gene_name": "wnt8-2", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q90YL8", "url": "https://www.uniprot.org/uniprotkb/Q90YL8" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.16216234", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": 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], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Role of hepsin in factor VII activation in zebrafish.", "journal": "Blood Cells Mol. Dis.", "date": "2014", "authors": "Khandekar Gauri, Jagadeeswaran Pudur", "reference": { "type": "PubMed", "id": "23954211", "url": "https://pubmed.ncbi.nlm.nih.gov/23954211" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A8DZG9-1", "protein_name": "3.4.21.106; Serine protease hepsin", "gene_name": "hpn", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QW52-1", "protein_name": "trypsin", "gene_name": "habp2", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "A8DZG9", "url": "https://www.uniprot.org/uniprotkb/A8DZG9" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.23954211", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Evolution of the neuropeptide Y family: new genes by chromosome duplications in early vertebrates and in teleost fishes.", "journal": "Gen. Comp. Endocrinol.", "date": "2008", "authors": "Sundstr\u00f6m G\u00f6rel, Larsson Tomas A, Brenner Sydney, Venkatesh Byrappa, Larhammar Dan", "reference": { "type": "PubMed", "id": "17950734", "url": "https://pubmed.ncbi.nlm.nih.gov/17950734" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q1LW94-1", "protein_name": "MAGUK p55 subfamily member 6b", "gene_name": "pals2b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7F0L6-1", "protein_name": "Peptide YYb precursor", "gene_name": "pyyb", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M2BJS4-1", "protein_name": "Oxysterol-binding protein", "gene_name": "osbpl6", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q1LW94", "url": "https://www.uniprot.org/uniprotkb/Q1LW94" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.17950734", 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Biol. Chem.", "date": "2020", "authors": "Li Jiang-Yuan, Wang Yue-Yi, Shao Tong, Fan Dong-Dong, Lin Ai-Fu, Xiang Li-Xin, Shao Jian-Zhong", "reference": { "type": "PubMed", "id": "31852739", "url": "https://pubmed.ncbi.nlm.nih.gov/31852739" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q1LW94-1", "protein_name": "MAGUK p55 subfamily member 6b", "gene_name": "pals2b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB13AA50-1", "protein_name": "2.7.11.1; Serine/threonine-protein kinase 31", "gene_name": "stk31", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58HFX7-1", "protein_name": "MAGUK p55 subfamily member 6a isoform X2", "gene_name": "pals2a", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q1LW94", "url": "https://www.uniprot.org/uniprotkb/Q1LW94" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } 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Issac, Huh Tea-Lin, Rhee Myungchull", "reference": { "type": "PubMed", "id": "30834156", "url": "https://pubmed.ncbi.nlm.nih.gov/30834156" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q05AL8-1", "protein_name": "Zinc finger protein 76", "gene_name": "znf76", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q05AL8", "url": "https://www.uniprot.org/uniprotkb/Q05AL8" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.30834156", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", 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Biol. Chem.", "date": "2016", "authors": "Zeituni Erin M, Wilson Meredith H, Zheng Xiaobin, Iglesias Pablo A, Sepanski Michael A, Siddiqi Mahmud A, Anderson Jennifer L, Zheng Yixian, Farber Steven A", "reference": { "type": "PubMed", "id": "27655916", "url": "https://pubmed.ncbi.nlm.nih.gov/27655916" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q5RH35-1", "protein_name": "Acyl-CoA thioesterase 18", "gene_name": "acot16; acot18", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1N5N8-1", "protein_name": "Apolipoprotein A-IV", "gene_name": "apoa4a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58HH61-1", "protein_name": "Apolipoprotein A-IV b, tandem duplicate 2 isoform X1", "gene_name": "apoa4b.2; apoa4b.3", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q5RH35", "url": "https://www.uniprot.org/uniprotkb/Q5RH35" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.27655916", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Overexpression of Jak1 Activating Mutants in Hepatocytes Is Insufficient to Generate Hepatocellular Carcinoma in Zebrafish.", "journal": "J. Genet. Genomics", "date": "2016", "authors": "Yuan Yue, Zhang Jian, Zhou Qin", "reference": { "type": "PubMed", "id": "26924692", "url": "https://pubmed.ncbi.nlm.nih.gov/26924692" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "X1WC58-1", "protein_name": "Interleukin 21 receptor, tandem duplicate 1 precursor", "gene_name": "il21r.1", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "X1WC58", "url": "https://www.uniprot.org/uniprotkb/X1WC58" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.26924692", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Coordination of cytochrome c oxidase gene expression in the remodelling of skeletal muscle.", "journal": "J. Exp. Biol.", "date": "2011", "authors": "Duggan Ana T, Kocha Katrinka M, Monk Christopher T, Bremer Katharina, Moyes Christopher D", "reference": { "type": "PubMed", "id": "21562175", "url": "https://pubmed.ncbi.nlm.nih.gov/21562175" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "X1WER9-1", "protein_name": "Cytochrome c oxidase subunit 8B", "gene_name": "cox8b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q6ZM23-1", "protein_name": "Cytochrome c oxidase subunit 6C", "gene_name": "cox6c", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "X1WER9", "url": "https://www.uniprot.org/uniprotkb/X1WER9" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.21562175", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Mitochondrial dysfunction-based cardiotoxicity and neurotoxicity induced by pyraclostrobin in zebrafish larvae.", "journal": "Environ. Pollut.", "date": "2019", "authors": "Li Hui, Zhao Feng, Cao Fangjie, Teng Miaomiao, Yang Yang, Qiu Lihong", "reference": { "type": "PubMed", "id": "31078959", "url": "https://pubmed.ncbi.nlm.nih.gov/31078959" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "X1WER9-1", "protein_name": "Cytochrome c oxidase subunit 8B", "gene_name": "cox8b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QJE0-1", "protein_name": "Ubiquinol-cytochrome c reductase core protein 2a", "gene_name": "uqcrc2a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1R6I1-1", "protein_name": "Cytochrome c oxidase subunit 4", "gene_name": "cox4i1l", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "X1WER9", "url": "https://www.uniprot.org/uniprotkb/X1WER9" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.31078959", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "DHX33 Transcriptionally Controls Genes Involved in the Cell Cycle.", "journal": "Mol. 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Sci. 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Physiol.", "date": "2021", "authors": "Shanaka K A S N, Jung Sumi, Janson N D, Jayasingha J R P, Madushani K P, Kim Myoung-Jin, Lee Jehee", "reference": { "type": "PubMed", "id": "34290620", "url": "https://pubmed.ncbi.nlm.nih.gov/34290620" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F6NS11-1", "protein_name": "Solute carrier family 23 member 1", "gene_name": "slc23a1", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F6NS11", "url": "https://www.uniprot.org/uniprotkb/F6NS11" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.34290620", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Spatiotemporal Characterization of Anterior Segment Mesenchyme Heterogeneity During Zebrafish Ocular Anterior Segment Development.", "journal": "Front. Cell Dev. Biol.", "date": "2020", "authors": "Van Der Meulen Kristyn L, V\u00f6cking Oliver, Weaver Megan L, Meshram Nishita N, Famulski Jakub K", "reference": { "type": "PubMed", "id": "32528955", "url": "https://pubmed.ncbi.nlm.nih.gov/32528955" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F6NXP1-1", "protein_name": "Plac8 onzin related protein 3", "gene_name": "ponzr3", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4IDC4-1", "protein_name": "Uncharacterized protein LOC100334344 precursor", "gene_name": "si:ch211-195b11.3", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F6NXP1", "url": "https://www.uniprot.org/uniprotkb/F6NXP1" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.32528955", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], 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Juliane, Petzold Andreas, Ninov Nikolay, Kesavan Gokul, Lange Christian, Brand Michael, Lefort Anne, Libert Fr\u00e9d\u00e9rick, Detours Vincent, Costagliola Sabine, Sumeet Pal Singh", "reference": { "type": "PubMed", "id": "33140917", "url": "https://pubmed.ncbi.nlm.nih.gov/33140917" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F6NXP1-1", "protein_name": "Plac8 onzin related protein 3", "gene_name": "ponzr3", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F6NXP1", "url": "https://www.uniprot.org/uniprotkb/F6NXP1" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.33140917", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], 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Commun.", "date": "2016", "authors": "Holland P, Knaevelsrud H, Soreng K, Mathai BJ, Lystad AH, Pankiv S, Bjorndal GT, Schultz SW, Lobert VH, Chan RB, Zhou B, Liestol K, Carlsson SR, Melia TJ, Di Paolo G, Simonsen A", "reference": { "type": "PubMed", "id": "28004827", "url": "https://pubmed.ncbi.nlm.nih.gov/28004827" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F6PCK0-1", "protein_name": "HCLS1-binding protein 3", "gene_name": "hs1bp3", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q53T59-1", "protein_name": "HCLS1-binding protein 3", "gene_name": "HS1BP3", "tax_name": "Human" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F6PCK0", "url": "https://www.uniprot.org/uniprotkb/F6PCK0" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.28004827", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], 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Sci. Technol.", "date": "2018", "authors": "Hou Jing, Liu Haiqiang, Wang Luyao, Duan Linshuai, Li Shiguo, Wang Xiangke", "reference": { "type": "PubMed", "id": "29944347", "url": "https://pubmed.ncbi.nlm.nih.gov/29944347" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q1L8B4-1", "protein_name": "Uncharacterized protein LOC555399", "gene_name": "si:dkeyp-114g9.1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1N8E1-1", "protein_name": "BLOC-3 complex member HPS1", "gene_name": "hps1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NDU3-1", "protein_name": "Wilms tumor protein homolog", "gene_name": "42sp43", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB13A9S3-1", "protein_name": "Uncharacterized protein LOC100137113 precursor", "gene_name": "zgc:171474", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1N0R9-1", "protein_name": "NIPA-like protein 3", "gene_name": "nipal3", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B0UYT8-1", "protein_name": "Nucleoplasmin-2a", "gene_name": "npm2a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1P1N5-1", "protein_name": "Avidin precursor", "gene_name": "avd", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QE49-1", "protein_name": "F-box only protein 43", "gene_name": "fbxo43", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB32TWT5-1", "protein_name": "Globoside alpha-1,3-N-acetylgalactosaminyltransferase 1, like 2 isoform X1", "gene_name": "gbgt1l2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB32T2R7-1", "protein_name": "Serine protease", "gene_name": "prss23", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q1L8B4", "url": "https://www.uniprot.org/uniprotkb/Q1L8B4" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.29944347", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 10 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Ionizing radiation induces transgenerational effects of DNA methylation in zebrafish.", "journal": "Sci. Rep.", "date": "2018", "authors": "Kamstra Jorke H, Hurem Selma, Martin Leonardo Martin, Lindeman Leif C, Legler Juliette, Oughton Deborah, Salbu Brit, Brede Dag Anders, Lyche Jan Ludvig, Alestr\u00f6m Peter", "reference": { "type": "PubMed", "id": "30337673", "url": "https://pubmed.ncbi.nlm.nih.gov/30337673" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q1L8N6-1", "protein_name": "F-box only protein 46", "gene_name": "fbxo46", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58HBA4-1", "protein_name": "Unconventional myosin-Ic", "gene_name": "myo1cb", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q1L8N6", "url": "https://www.uniprot.org/uniprotkb/Q1L8N6" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.30337673", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], 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Cell Res.", "date": "2021", "authors": "Ahrens Nicole, Elbers Dana, Greb Helena, Janssen-Bienhold Ulrike, Koch Karl-Wilhelm", "reference": { "type": "PubMed", "id": "33385424", "url": "https://pubmed.ncbi.nlm.nih.gov/33385424" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q1LUD3-1", "protein_name": "Recoverin 3", "gene_name": "rcvrn3", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q1LUD3", "url": "https://www.uniprot.org/uniprotkb/Q1LUD3" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.33385424", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The zebrafish genes encoding the Polycomb repressive complex (PRC) 1.", "journal": "Gene", "date": "2011", "authors": "Le Faou Perrine, V\u00f6lkel Pamela, Angrand Pierre-Olivier", "reference": { "type": "PubMed", "id": "21195142", "url": "https://pubmed.ncbi.nlm.nih.gov/21195142" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q1LUW2-1", "protein_name": "Neutrophil cytosol factor 4", "gene_name": "ncf4", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1N4X6-1", "protein_name": "Nebulette", "gene_name": "nebl", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1N5K1-1", "protein_name": "Chromobox homolog 7a", "gene_name": "cbx7a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "X1WBY5-1", "protein_name": "Chromobox protein homolog 6", "gene_name": "cbx6b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F6P2R0-1", "protein_name": "Polyhomeotic-like protein 2b", "gene_name": "phc2b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1R0I2-1", "protein_name": "Apolipoprotein D", "gene_name": "apoda.1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F6NXI2-1", "protein_name": "Ectonucleotide pyrophosphatase/phosphodiesterase family member 7.1 precursor", "gene_name": "enpp7.1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q8QHL5-1", "protein_name": "Polyhomeotic-like protein 2", "gene_name": "phc2a; 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Struct. 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U.S.A.", "date": "2023", "authors": "Li Cheng-Yu, Lawrence Karli, Merlo-Coyne John, Juntti Scott A", "reference": { "type": "PubMed", "id": "36584295", "url": "https://pubmed.ncbi.nlm.nih.gov/36584295" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q2PRE4-1", "protein_name": "Odorant receptor 113-2", "gene_name": "or55a2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q2PRE5-1", "protein_name": "Odorant receptor 113-1", "gene_name": "or55a1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q2PRE3-1", "protein_name": "Odorant receptor 114-1", "gene_name": "or55d1", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q2PRE4", "url": "https://www.uniprot.org/uniprotkb/Q2PRE4" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.36584295", "abstract": "", "glycosylation": [], "mutagenesis": 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Invest.", "date": "2007", "authors": "Nakamura Yukio, Weidinger Gilbert, Liang Jennifer O, Aquilina-Beck Allisan, Tamai Keiko, Moon Randall T, Warman Matthew L", "reference": { "type": "PubMed", "id": "17823661", "url": "https://pubmed.ncbi.nlm.nih.gov/17823661" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q5SNS3-1", "protein_name": "Tubulin epsilon chain", "gene_name": "tube1", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q5SNS3", "url": "https://www.uniprot.org/uniprotkb/Q5SNS3" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.17823661", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Role of oxidative stress in clofazimine-induced cardiac dysfunction in a zebrafish model.", "journal": "Biomed. Pharmacother.", "date": "2020", "authors": "Ng Phoebe C I, Chan Judy Y W, Leung Ross K K, Li J, Ren Z, Chan Anthony W H, Xu Y, Lee S S, Wang R, Ji Xia, Zheng Jun, Chan Denise P C, Yew W W, Lee Simon M Y", "reference": { "type": "PubMed", "id": "33017766", "url": "https://pubmed.ncbi.nlm.nih.gov/33017766" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q5VJN3-1", "protein_name": "Neuropeptides B/W receptor type 2b", "gene_name": "npbwr2b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58JE95-1", "protein_name": "Odontogenic ameloblast-associated protein", "gene_name": "odam", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M2B3R9-1", "protein_name": "Apoptosis inducing factor mitochondria associated 4", "gene_name": "aifm4", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q5VJN3", "url": "https://www.uniprot.org/uniprotkb/Q5VJN3" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.33017766", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Zebrafish (Danio rerio) matrilins: shared and divergent characteristics with their mammalian counterparts.", "journal": "Biochem. J.", "date": "2005", "authors": "Ko Ya-Ping, Kobbe Birgit, Paulsson Mats, Wagener Raimund", "reference": { "type": "PubMed", "id": "15588228", "url": "https://pubmed.ncbi.nlm.nih.gov/15588228" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q68EK6-1", "protein_name": "Matrilin-3a isoform 1 precursor; Matrilin-3a isoform X1", "gene_name": "matn3a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A5WWJ4-1", "protein_name": "Matrilin-1", "gene_name": "matn1", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q68EK6", "url": "https://www.uniprot.org/uniprotkb/Q68EK6" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.15588228", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Reciprocal gene loss between Tetraodon and zebrafish after whole genome duplication in their ancestor.", "journal": "Trends Genet.", "date": "2007", "authors": "S\u00e9mon Marie, Wolfe Kenneth H", "reference": { "type": "PubMed", "id": "17275132", "url": "https://pubmed.ncbi.nlm.nih.gov/17275132" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q68EK6-1", "protein_name": "Matrilin-3a isoform 1 precursor; 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