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"title": "Zap70 Regulates TCR-Mediated Zip6 Activation at the Immunological Synapse.", "journal": "Frontiers in immunology", "date": "2021", "authors": "Kim B, Kim HY, Lee WW", "reference": { "type": "PubMed", "id": "34394081", "url": "https://pubmed.ncbi.nlm.nih.gov/34394081" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13433-1", "protein_name": "Zinc transporter ZIP6", "gene_name": "SLC39A6", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13433", "url": "https://www.uniprot.org/uniprotkb/Q13433" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.34394081", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ 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and therapy failure.", "journal": "Journal of cellular physiology", "date": "2024-04", "authors": "Saravanan Roshni, Balasubramanian Vaishnavi, Sundaram Sandhya, Dev Bhawna, Vittalraj Pavithra, Pitani Ravi Shankar, Shanmugasundaram Gouthaman, Rayala Suresh Kumar, Venkatraman Ganesh", "reference": { "type": "PubMed", "id": "38345361", "url": "https://pubmed.ncbi.nlm.nih.gov/38345361" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q13433-1", "protein_name": "Zinc transporter ZIP6", "gene_name": "SLC39A6", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q13433", "url": "https://www.uniprot.org/uniprotkb/Q13433" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.38345361", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { 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"field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "ERM proteins and merlin: integrators at the cell cortex.", "journal": "Nature reviews. 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molecule RGMa alters utilization of bone morphogenetic protein (BMP) type II receptors by BMP2 and BMP4.", "journal": "The Journal of biological chemistry", "date": "2007", "authors": "Xia Y, Yu PB, Sidis Y, Beppu H, Bloch KD, Schneyer AL, Lin HY", "reference": { "type": "PubMed", "id": "17472960", "url": "https://pubmed.ncbi.nlm.nih.gov/17472960" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q96B86-1", "protein_name": "Repulsive guidance molecule A", "gene_name": "RGMA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6PCX7-1", "protein_name": "Repulsive guidance molecule A", "gene_name": "Rgma", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P21275-1", "protein_name": "Bone morphogenetic protein 4", "gene_name": "Bmp4", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P21274-1", "protein_name": "Bone morphogenetic protein 2", "gene_name": "Bmp2", "tax_name": "Mouse" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { 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Genet.", "date": "2000", "authors": "Horikawa Y, Oda N, Cox N J, Li X, Orho-Melander M, Hara M, Hinokio Y, Lindner T H, Mashima H, Schwarz P E, del Bosque-Plata L, Horikawa Y, Oda Y, Yoshiuchi I, Colilla S, Polonsky K S, Wei S, Concannon P, Iwasaki N, Schulze J, Baier L J, Bogardus C, Groop L, Boerwinkle E, Hanis C L, Bell G I", "reference": { "type": "PubMed", "id": "11017071", "url": "https://pubmed.ncbi.nlm.nih.gov/11017071" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9HAU8-1", "protein_name": "Aminopeptidase RNPEPL1", "gene_name": "RNPEPL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9ESK3-1", "protein_name": "Calpain-10", "gene_name": "Capn10", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9HC97-1", "protein_name": "G protein-coupled receptor 35", "gene_name": "GPR35", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HC96-1", "protein_name": "Calpain-10", "gene_name": "CAPN10", "tax_name": "Human" }, { "uniprot_canonical_ac": 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"date": "2003", "authors": "Franklin RB, Ma J, Zou J, Guan Z, Kukoyi BI, Feng P, Costello LC", "reference": { "type": "PubMed", "id": "12888280", "url": "https://pubmed.ncbi.nlm.nih.gov/12888280" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9NY26-1", "protein_name": "Zinc transporter ZIP1", "gene_name": "SLC39A1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9NY26", "url": "https://www.uniprot.org/uniprotkb/Q9NY26" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.12888280", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": 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Chem.", "date": "2000", "authors": "Koc EC, Burkhart W, Blackburn K, Moseley A, Koc H, Spremulli LL", "reference": { "type": "PubMed", "id": "10938081", "url": "https://pubmed.ncbi.nlm.nih.gov/10938081" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P82650-1", "protein_name": "Small ribosomal subunit protein mS22", "gene_name": "MRPS22", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96EL2-1", "protein_name": "Small ribosomal subunit protein uS3m", "gene_name": "MRPS24", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60783-1", "protein_name": "Small ribosomal subunit protein uS14m", "gene_name": "MRPS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2M2T7-1", "protein_name": "Small ribosomal subunit protein uS3m", "gene_name": "MRPS24", "tax_name": "Bovine" }, { "uniprot_canonical_ac": "P82669-1", "protein_name": "Small ribosomal subunit protein mS25", "gene_name": "MRPS25", "tax_name": "Bovine" }, { "uniprot_canonical_ac": "P82649-1", 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Genet.", "date": "2001", "authors": "Crisponi L, Deiana M, Loi A, Chiappe F, Uda M, Amati P, Bisceglia L, Zelante L, Nagaraja R, Porcu S, Ristaldi MS, Marzella R, Rocchi M, Nicolino M, Lienhardt-Roussie A, Nivelon A, Verloes A, Schlessinger D, Gasparini P, Bonneau D, Cao A, Pilia G", "reference": { "type": "PubMed", "id": "11175783", "url": "https://pubmed.ncbi.nlm.nih.gov/11175783" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P82650-1", "protein_name": "Small ribosomal subunit protein mS22", "gene_name": "MRPS22", "tax_name": "Human" }, { "uniprot_canonical_ac": "P58012-1", "protein_name": "Forkhead box protein L2", "gene_name": "FOXL2", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P82650", "url": "https://www.uniprot.org/uniprotkb/P82650" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": 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"uniprot_canonical_ac": "Q12788-1", "protein_name": "Transducin beta-like protein 3", "gene_name": "TBL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UI30-1", "protein_name": "Multifunctional methyltransferase subunit TRM112-like protein", "gene_name": "TRMT112", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NX24-1", "protein_name": "H/ACA ribonucleoprotein complex subunit 2", "gene_name": "NHP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00567-1", "protein_name": "Nucleolar protein 56", "gene_name": "NOP56", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55769-1", "protein_name": "NHP2-like protein 1", "gene_name": "SNU13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPE3-1", "protein_name": "H/ACA ribonucleoprotein complex subunit 3", "gene_name": "NOP10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46087-1", "protein_name": "28S rRNA (cytosine(4447)-C(5))-methyltransferase", "gene_name": "NOP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3A2-1", "protein_name": "Probable U3 small nucleolar RNA-associated protein 11", "gene_name": "UTP11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NQZ2-1", "protein_name": "Something about silencing protein 10", "gene_name": "UTP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q68CQ4-1", "protein_name": "U3 small nucleolar RNA-associated protein 25 homolog", "gene_name": "UTP25", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IY37-1", "protein_name": "Probable ATP-dependent RNA helicase DHX37", "gene_name": "DHX37", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y324-1", "protein_name": "rRNA-processing protein FCF1 homolog", "gene_name": "FCF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92979-1", "protein_name": "Ribosomal RNA small subunit methyltransferase NEP1", "gene_name": "EMG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5TAP6-1", "protein_name": "U3 small nucleolar RNA-associated protein 14 homolog C", "gene_name": "UTP14C", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43709-1", "protein_name": "18S rRNA (guanine-N(7))-methyltransferase", "gene_name": "BUD23", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15269-1", "protein_name": "Periodic tryptophan protein 2 homolog", "gene_name": "PWP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0A0-1", "protein_name": "RNA cytidine acetyltransferase", "gene_name": "NAT10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NRX1-1", "protein_name": "RNA-binding protein PNO1", "gene_name": "PNO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNQ2-1", "protein_name": "Dimethyladenosine transferase", "gene_name": "DIMT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60832-1", "protein_name": "H/ACA ribonucleoprotein complex subunit DKC1", "gene_name": "DKC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22087-1", "protein_name": "rRNA 2'-O-methyltransferase fibrillarin", "gene_name": "FBL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0S4-1", "protein_name": "Probable ATP-dependent RNA helicase DDX47", "gene_name": "DDX47", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62263-1", "protein_name": "Small ribosomal subunit protein uS11", "gene_name": "RPS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2R4-1", "protein_name": "Probable ATP-dependent RNA helicase DDX52", "gene_name": "DDX52", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96G21-1", "protein_name": "U3 small nucleolar ribonucleoprotein protein IMP4", "gene_name": "IMP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NY12-1", "protein_name": "H/ACA ribonucleoprotein complex subunit 1", "gene_name": "GAR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15880-1", "protein_name": "Small ribosomal subunit protein uS5", "gene_name": "RPS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BVJ6-1", "protein_name": "U3 small nucleolar RNA-associated protein 14 homolog A", "gene_name": "UTP14A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5J1-1", "protein_name": "U3 small nucleolar RNA-associated protein 18 homolog", "gene_name": "UTP18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NYH9-1", "protein_name": "U3 small nucleolar RNA-associated protein 6 homolog", "gene_name": "UTP6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWA0-1", "protein_name": "WD repeat-containing protein 75", "gene_name": "WDR75", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BVI4-1", "protein_name": "Nucleolar complex protein 4 homolog", "gene_name": "NOC4L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14692-1", "protein_name": "Ribosome biogenesis protein BMS1 homolog", "gene_name": "BMS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6V7-1", "protein_name": "Probable ATP-dependent RNA helicase DDX49", "gene_name": "DDX49", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00566-1", "protein_name": "U3 small nucleolar ribonucleoprotein protein MPP10", "gene_name": "MPHOSPH10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H583-1", "protein_name": "HEAT repeat-containing protein 1", "gene_name": "HEATR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62753-1", "protein_name": "Small ribosomal subunit protein eS6", "gene_name": "RPS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75691-1", "protein_name": "Small subunit processome component 20 homolog", "gene_name": "UTP20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2P8-1", "protein_name": "RNA 3'-terminal phosphate cyclase-like protein", "gene_name": "RCL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14690-1", "protein_name": "Protein RRP5 homolog", "gene_name": "PDCD11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969X6-1", "protein_name": "U3 small nucleolar RNA-associated protein 4 homolog", "gene_name": "UTP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2X3-1", "protein_name": "Nucleolar protein 58", "gene_name": "NOP58", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H8H0-1", "protein_name": "Nucleolar protein 11", "gene_name": "NOL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78316-1", "protein_name": "Nucleolar protein 14", "gene_name": "NOP14", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43818-1", "protein_name": "U3 small nucleolar RNA-interacting protein 2", "gene_name": "RRP9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15061-1", "protein_name": "WD repeat-containing protein 43", "gene_name": "WDR43", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NV31-1", "protein_name": "U3 small nucleolar ribonucleoprotein protein IMP3", "gene_name": "IMP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NV06-1", "protein_name": "DDB1- and CUL4-associated factor 13", "gene_name": "DCAF13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13601-1", "protein_name": "KRR1 small subunit processome component homolog", "gene_name": "KRR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62081-1", "protein_name": "Small ribosomal subunit protein eS7", "gene_name": "RPS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H6R4-1", "protein_name": "Nucleolar protein 6", "gene_name": "NOL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TED0-1", "protein_name": "U3 small nucleolar RNA-associated protein 15 homolog", "gene_name": "UTP15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UJK0-1", "protein_name": "18S rRNA aminocarboxypropyltransferase", "gene_name": "TSR3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15213-1", "protein_name": "WD repeat-containing protein 46", "gene_name": "WDR46", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NXG2-1", "protein_name": "THUMP domain-containing protein 1", "gene_name": "THUMPD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NI36-1", "protein_name": "WD repeat-containing protein 36", "gene_name": "WDR36", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNX4-1", "protein_name": "WD repeat-containing protein 3", "gene_name": "WDR3", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q96EU6", "url": "https://www.uniprot.org/uniprotkb/Q96EU6" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.10606270", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 60 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A common core RNP structure shared between the small nucleoar box C/D RNPs and the spliceosomal U4 snRNP.", "journal": "Cell", "date": "2000", "authors": "Watkins NJ, Segault V, Charpentier B, Nottrott S, Fabrizio P, Bachi A, Wilm M, Rosbash M, Branlant C, Luhrmann R", "reference": { "type": "PubMed", "id": "11081632", "url": "https://pubmed.ncbi.nlm.nih.gov/11081632" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q96EU6-1", "protein_name": "Ribosomal RNA processing protein 36 homolog", "gene_name": "RRP36", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3A4-1", "protein_name": "Ribosomal RNA-processing protein 7 homolog A", "gene_name": "RRP7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46781-1", "protein_name": "Small ribosomal subunit protein uS4", "gene_name": "RPS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12788-1", "protein_name": "Transducin beta-like protein 3", "gene_name": "TBL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UI30-1", "protein_name": "Multifunctional methyltransferase subunit TRM112-like protein", "gene_name": "TRMT112", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NX24-1", "protein_name": "H/ACA ribonucleoprotein complex subunit 2", "gene_name": "NHP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00567-1", "protein_name": "Nucleolar protein 56", "gene_name": "NOP56", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55769-1", "protein_name": "NHP2-like protein 1", "gene_name": "SNU13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPE3-1", "protein_name": "H/ACA ribonucleoprotein complex subunit 3", "gene_name": "NOP10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46087-1", "protein_name": "28S rRNA (cytosine(4447)-C(5))-methyltransferase", "gene_name": "NOP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3A2-1", "protein_name": "Probable U3 small nucleolar RNA-associated protein 11", "gene_name": "UTP11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NQZ2-1", "protein_name": "Something about silencing protein 10", "gene_name": "UTP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q68CQ4-1", "protein_name": "U3 small nucleolar RNA-associated protein 25 homolog", "gene_name": "UTP25", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IY37-1", "protein_name": "Probable ATP-dependent RNA helicase DHX37", "gene_name": "DHX37", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y324-1", "protein_name": "rRNA-processing protein FCF1 homolog", "gene_name": "FCF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92979-1", "protein_name": "Ribosomal RNA small subunit methyltransferase NEP1", "gene_name": "EMG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5TAP6-1", "protein_name": "U3 small nucleolar RNA-associated protein 14 homolog C", "gene_name": "UTP14C", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43709-1", "protein_name": "18S rRNA (guanine-N(7))-methyltransferase", "gene_name": "BUD23", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15269-1", "protein_name": "Periodic tryptophan protein 2 homolog", "gene_name": "PWP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0A0-1", "protein_name": "RNA cytidine acetyltransferase", "gene_name": "NAT10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NRX1-1", "protein_name": "RNA-binding protein PNO1", "gene_name": "PNO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNQ2-1", "protein_name": "Dimethyladenosine transferase", "gene_name": "DIMT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60832-1", "protein_name": "H/ACA ribonucleoprotein complex subunit DKC1", "gene_name": "DKC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22087-1", "protein_name": "rRNA 2'-O-methyltransferase fibrillarin", "gene_name": "FBL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0S4-1", "protein_name": "Probable ATP-dependent RNA helicase DDX47", "gene_name": "DDX47", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62263-1", "protein_name": "Small ribosomal subunit protein uS11", "gene_name": "RPS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2R4-1", "protein_name": "Probable ATP-dependent RNA helicase DDX52", "gene_name": "DDX52", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96G21-1", "protein_name": "U3 small nucleolar ribonucleoprotein protein IMP4", "gene_name": "IMP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NY12-1", "protein_name": "H/ACA ribonucleoprotein complex subunit 1", "gene_name": "GAR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15880-1", "protein_name": "Small ribosomal subunit protein uS5", "gene_name": "RPS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BVJ6-1", "protein_name": "U3 small nucleolar RNA-associated protein 14 homolog A", "gene_name": "UTP14A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5J1-1", "protein_name": "U3 small nucleolar RNA-associated protein 18 homolog", "gene_name": "UTP18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NYH9-1", "protein_name": "U3 small nucleolar RNA-associated protein 6 homolog", "gene_name": "UTP6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWA0-1", "protein_name": "WD repeat-containing protein 75", "gene_name": "WDR75", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BVI4-1", "protein_name": "Nucleolar complex protein 4 homolog", "gene_name": "NOC4L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14692-1", "protein_name": "Ribosome biogenesis protein BMS1 homolog", "gene_name": "BMS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6V7-1", "protein_name": "Probable ATP-dependent RNA helicase DDX49", "gene_name": "DDX49", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00566-1", "protein_name": "U3 small nucleolar ribonucleoprotein protein MPP10", "gene_name": "MPHOSPH10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H583-1", "protein_name": "HEAT repeat-containing protein 1", "gene_name": "HEATR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62753-1", "protein_name": "Small ribosomal subunit protein eS6", "gene_name": "RPS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75691-1", "protein_name": "Small subunit processome component 20 homolog", "gene_name": "UTP20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2P8-1", "protein_name": "RNA 3'-terminal phosphate cyclase-like protein", "gene_name": "RCL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14690-1", "protein_name": "Protein RRP5 homolog", "gene_name": "PDCD11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969X6-1", "protein_name": "U3 small nucleolar RNA-associated protein 4 homolog", "gene_name": "UTP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2X3-1", "protein_name": "Nucleolar protein 58", "gene_name": "NOP58", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H8H0-1", "protein_name": "Nucleolar protein 11", "gene_name": "NOL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78316-1", "protein_name": "Nucleolar protein 14", "gene_name": "NOP14", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43818-1", "protein_name": "U3 small nucleolar RNA-interacting protein 2", "gene_name": "RRP9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15061-1", "protein_name": "WD repeat-containing protein 43", "gene_name": "WDR43", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NV31-1", "protein_name": "U3 small nucleolar ribonucleoprotein protein IMP3", "gene_name": "IMP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NV06-1", "protein_name": "DDB1- and CUL4-associated factor 13", "gene_name": "DCAF13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13601-1", "protein_name": "KRR1 small subunit processome component homolog", "gene_name": "KRR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62081-1", "protein_name": "Small ribosomal subunit protein eS7", "gene_name": "RPS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H6R4-1", "protein_name": "Nucleolar protein 6", "gene_name": "NOL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P39990-1", "protein_name": "13 kDa ribonucleoprotein-associated protein", "gene_name": "SNU13", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q8TED0-1", "protein_name": "U3 small nucleolar RNA-associated protein 15 homolog", "gene_name": "UTP15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UJK0-1", "protein_name": "18S rRNA aminocarboxypropyltransferase", "gene_name": "TSR3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15213-1", "protein_name": "WD repeat-containing protein 46", "gene_name": "WDR46", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NXG2-1", "protein_name": "THUMP domain-containing protein 1", "gene_name": "THUMPD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NI36-1", "protein_name": "WD repeat-containing protein 36", "gene_name": "WDR36", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNX4-1", "protein_name": "WD repeat-containing protein 3", "gene_name": "WDR3", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q96EU6", "url": "https://www.uniprot.org/uniprotkb/Q96EU6" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.11081632", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 61 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Nep1p (Emg1p), a novel protein conserved in eukaryotes and archaea, is involved in ribosome biogenesis.", "journal": "Current genetics", "date": "2002", "authors": "Eschrich D, Buchhaupt M, Kotter P, Entian KD", "reference": { "type": "PubMed", "id": "11935223", "url": "https://pubmed.ncbi.nlm.nih.gov/11935223" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q96EU6-1", "protein_name": "Ribosomal RNA processing protein 36 homolog", "gene_name": "RRP36", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3A4-1", "protein_name": "Ribosomal RNA-processing protein 7 homolog A", "gene_name": "RRP7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46781-1", "protein_name": "Small ribosomal subunit protein uS4", "gene_name": "RPS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12788-1", "protein_name": "Transducin beta-like protein 3", "gene_name": "TBL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UI30-1", "protein_name": "Multifunctional methyltransferase subunit TRM112-like protein", "gene_name": "TRMT112", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NX24-1", "protein_name": "H/ACA ribonucleoprotein complex subunit 2", "gene_name": "NHP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00567-1", "protein_name": "Nucleolar protein 56", "gene_name": "NOP56", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55769-1", "protein_name": "NHP2-like protein 1", "gene_name": "SNU13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPE3-1", "protein_name": "H/ACA ribonucleoprotein complex subunit 3", "gene_name": "NOP10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46087-1", "protein_name": "28S rRNA (cytosine(4447)-C(5))-methyltransferase", "gene_name": "NOP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3A2-1", "protein_name": "Probable U3 small nucleolar RNA-associated protein 11", "gene_name": "UTP11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NQZ2-1", "protein_name": "Something about silencing protein 10", "gene_name": "UTP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q68CQ4-1", "protein_name": "U3 small nucleolar RNA-associated protein 25 homolog", "gene_name": "UTP25", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IY37-1", "protein_name": "Probable ATP-dependent RNA helicase DHX37", "gene_name": "DHX37", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y324-1", "protein_name": "rRNA-processing protein FCF1 homolog", "gene_name": "FCF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92979-1", "protein_name": "Ribosomal RNA small subunit methyltransferase NEP1", "gene_name": "EMG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5TAP6-1", "protein_name": "U3 small nucleolar RNA-associated protein 14 homolog C", "gene_name": "UTP14C", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43709-1", "protein_name": "18S rRNA (guanine-N(7))-methyltransferase", "gene_name": "BUD23", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15269-1", "protein_name": "Periodic tryptophan protein 2 homolog", "gene_name": "PWP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0A0-1", "protein_name": "RNA cytidine acetyltransferase", "gene_name": "NAT10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NRX1-1", "protein_name": "RNA-binding protein PNO1", "gene_name": "PNO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNQ2-1", "protein_name": "Dimethyladenosine transferase", "gene_name": "DIMT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60832-1", "protein_name": "H/ACA ribonucleoprotein complex subunit DKC1", "gene_name": "DKC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22087-1", "protein_name": "rRNA 2'-O-methyltransferase fibrillarin", "gene_name": "FBL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0S4-1", "protein_name": "Probable ATP-dependent RNA helicase DDX47", "gene_name": "DDX47", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62263-1", "protein_name": "Small ribosomal subunit protein uS11", "gene_name": "RPS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2R4-1", "protein_name": "Probable ATP-dependent RNA helicase DDX52", "gene_name": "DDX52", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96G21-1", "protein_name": "U3 small nucleolar ribonucleoprotein protein IMP4", "gene_name": "IMP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NY12-1", "protein_name": "H/ACA ribonucleoprotein complex subunit 1", "gene_name": "GAR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15880-1", "protein_name": "Small ribosomal subunit protein uS5", "gene_name": "RPS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BVJ6-1", "protein_name": "U3 small nucleolar RNA-associated protein 14 homolog A", "gene_name": "UTP14A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5J1-1", "protein_name": "U3 small nucleolar RNA-associated protein 18 homolog", "gene_name": "UTP18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NYH9-1", "protein_name": "U3 small nucleolar RNA-associated protein 6 homolog", "gene_name": "UTP6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWA0-1", "protein_name": "WD repeat-containing protein 75", "gene_name": "WDR75", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BVI4-1", "protein_name": "Nucleolar complex protein 4 homolog", "gene_name": "NOC4L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14692-1", "protein_name": "Ribosome biogenesis protein BMS1 homolog", "gene_name": "BMS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6V7-1", "protein_name": "Probable ATP-dependent RNA helicase DDX49", "gene_name": "DDX49", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00566-1", "protein_name": "U3 small nucleolar ribonucleoprotein protein MPP10", "gene_name": "MPHOSPH10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H583-1", "protein_name": "HEAT repeat-containing protein 1", "gene_name": "HEATR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62753-1", "protein_name": "Small ribosomal subunit protein eS6", "gene_name": "RPS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75691-1", "protein_name": "Small subunit processome component 20 homolog", "gene_name": "UTP20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2P8-1", "protein_name": "RNA 3'-terminal phosphate cyclase-like protein", "gene_name": "RCL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14690-1", "protein_name": "Protein RRP5 homolog", "gene_name": "PDCD11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969X6-1", "protein_name": "U3 small nucleolar RNA-associated protein 4 homolog", "gene_name": "UTP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2X3-1", "protein_name": "Nucleolar protein 58", "gene_name": "NOP58", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H8H0-1", "protein_name": "Nucleolar protein 11", "gene_name": "NOL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78316-1", "protein_name": "Nucleolar protein 14", "gene_name": "NOP14", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43818-1", "protein_name": "U3 small nucleolar RNA-interacting protein 2", "gene_name": "RRP9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15061-1", "protein_name": "WD repeat-containing protein 43", "gene_name": "WDR43", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NV31-1", "protein_name": "U3 small nucleolar ribonucleoprotein protein IMP3", "gene_name": "IMP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NV06-1", "protein_name": "DDB1- and CUL4-associated factor 13", "gene_name": "DCAF13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13601-1", "protein_name": "KRR1 small subunit processome component homolog", "gene_name": "KRR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62081-1", "protein_name": "Small ribosomal subunit protein eS7", "gene_name": "RPS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H6R4-1", "protein_name": "Nucleolar protein 6", "gene_name": "NOL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q06287-1", "protein_name": "Ribosomal RNA small subunit methyltransferase NEP1", "gene_name": "EMG1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q8TED0-1", "protein_name": "U3 small nucleolar RNA-associated protein 15 homolog", "gene_name": "UTP15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UJK0-1", "protein_name": "18S rRNA aminocarboxypropyltransferase", "gene_name": "TSR3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15213-1", "protein_name": "WD repeat-containing protein 46", "gene_name": "WDR46", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NXG2-1", "protein_name": "THUMP domain-containing protein 1", "gene_name": "THUMPD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NI36-1", "protein_name": "WD repeat-containing protein 36", "gene_name": "WDR36", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNX4-1", "protein_name": "WD repeat-containing protein 3", "gene_name": "WDR3", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q96EU6", "url": "https://www.uniprot.org/uniprotkb/Q96EU6" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.11935223", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 61 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Characterization of two novel genes, WBSCR20 and WBSCR22, deleted in Williams-Beuren syndrome.", "journal": "Cytogenetics and cell genetics", "date": "2001", "authors": "Doll A, Grzeschik KH", "reference": { "type": "PubMed", "id": "11978965", "url": "https://pubmed.ncbi.nlm.nih.gov/11978965" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q96EU6-1", "protein_name": "Ribosomal RNA processing protein 36 homolog", "gene_name": "RRP36", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3A4-1", "protein_name": "Ribosomal RNA-processing protein 7 homolog A", "gene_name": "RRP7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46781-1", "protein_name": "Small ribosomal subunit protein uS4", "gene_name": "RPS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12788-1", "protein_name": "Transducin beta-like protein 3", "gene_name": "TBL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UI30-1", "protein_name": "Multifunctional methyltransferase subunit TRM112-like protein", "gene_name": "TRMT112", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NX24-1", "protein_name": "H/ACA ribonucleoprotein complex subunit 2", "gene_name": "NHP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00567-1", "protein_name": "Nucleolar protein 56", "gene_name": "NOP56", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55769-1", "protein_name": "NHP2-like protein 1", "gene_name": "SNU13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPE3-1", "protein_name": "H/ACA ribonucleoprotein complex subunit 3", "gene_name": "NOP10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46087-1", "protein_name": "28S rRNA (cytosine(4447)-C(5))-methyltransferase", "gene_name": "NOP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3A2-1", "protein_name": "Probable U3 small nucleolar RNA-associated protein 11", "gene_name": "UTP11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NQZ2-1", "protein_name": "Something about silencing protein 10", "gene_name": "UTP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q68CQ4-1", "protein_name": "U3 small nucleolar RNA-associated protein 25 homolog", "gene_name": "UTP25", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IY37-1", "protein_name": "Probable ATP-dependent RNA helicase DHX37", "gene_name": "DHX37", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y324-1", "protein_name": "rRNA-processing protein FCF1 homolog", "gene_name": "FCF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92979-1", "protein_name": "Ribosomal RNA small subunit methyltransferase NEP1", "gene_name": "EMG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5TAP6-1", "protein_name": "U3 small nucleolar RNA-associated protein 14 homolog C", "gene_name": "UTP14C", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43709-1", "protein_name": "18S rRNA (guanine-N(7))-methyltransferase", "gene_name": "BUD23", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15269-1", "protein_name": "Periodic tryptophan protein 2 homolog", "gene_name": "PWP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0A0-1", "protein_name": "RNA cytidine acetyltransferase", "gene_name": "NAT10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NRX1-1", "protein_name": "RNA-binding protein PNO1", "gene_name": "PNO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNQ2-1", "protein_name": "Dimethyladenosine transferase", "gene_name": "DIMT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60832-1", "protein_name": "H/ACA ribonucleoprotein complex subunit DKC1", "gene_name": "DKC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22087-1", "protein_name": "rRNA 2'-O-methyltransferase fibrillarin", "gene_name": "FBL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0S4-1", "protein_name": "Probable ATP-dependent RNA helicase DDX47", "gene_name": "DDX47", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62263-1", "protein_name": "Small ribosomal subunit protein uS11", "gene_name": "RPS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2R4-1", "protein_name": "Probable ATP-dependent RNA helicase DDX52", "gene_name": "DDX52", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96G21-1", "protein_name": "U3 small nucleolar ribonucleoprotein protein IMP4", "gene_name": "IMP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q63ZY6-1", "protein_name": "Putative methyltransferase NSUN5C", "gene_name": "NSUN5P2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NY12-1", "protein_name": "H/ACA ribonucleoprotein complex subunit 1", "gene_name": "GAR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15880-1", "protein_name": "Small ribosomal subunit protein uS5", "gene_name": "RPS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BVJ6-1", "protein_name": "U3 small nucleolar RNA-associated protein 14 homolog A", "gene_name": "UTP14A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5J1-1", "protein_name": "U3 small nucleolar RNA-associated protein 18 homolog", "gene_name": "UTP18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NYH9-1", "protein_name": "U3 small nucleolar RNA-associated protein 6 homolog", "gene_name": "UTP6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWA0-1", "protein_name": "WD repeat-containing protein 75", "gene_name": "WDR75", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BVI4-1", "protein_name": "Nucleolar complex protein 4 homolog", "gene_name": "NOC4L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14692-1", "protein_name": "Ribosome biogenesis protein BMS1 homolog", "gene_name": "BMS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6V7-1", "protein_name": "Probable ATP-dependent RNA helicase DDX49", "gene_name": "DDX49", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00566-1", "protein_name": "U3 small nucleolar ribonucleoprotein protein MPP10", "gene_name": "MPHOSPH10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H583-1", "protein_name": "HEAT repeat-containing protein 1", "gene_name": "HEATR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62753-1", "protein_name": "Small ribosomal subunit protein eS6", "gene_name": "RPS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75691-1", "protein_name": "Small subunit processome component 20 homolog", "gene_name": "UTP20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2P8-1", "protein_name": "RNA 3'-terminal phosphate cyclase-like protein", "gene_name": "RCL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14690-1", "protein_name": "Protein RRP5 homolog", "gene_name": "PDCD11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969X6-1", "protein_name": "U3 small nucleolar RNA-associated protein 4 homolog", "gene_name": "UTP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96P11-1", "protein_name": "28S rRNA (cytosine-C(5))-methyltransferase", "gene_name": "NSUN5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2X3-1", "protein_name": "Nucleolar protein 58", "gene_name": "NOP58", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H8H0-1", "protein_name": "Nucleolar protein 11", "gene_name": "NOL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78316-1", "protein_name": "Nucleolar protein 14", "gene_name": "NOP14", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43818-1", "protein_name": "U3 small nucleolar RNA-interacting protein 2", "gene_name": "RRP9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15061-1", "protein_name": "WD repeat-containing protein 43", "gene_name": "WDR43", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NV31-1", "protein_name": "U3 small nucleolar ribonucleoprotein protein IMP3", "gene_name": "IMP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NV06-1", "protein_name": "DDB1- and CUL4-associated factor 13", "gene_name": "DCAF13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13601-1", "protein_name": "KRR1 small subunit processome component homolog", "gene_name": "KRR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62081-1", "protein_name": "Small ribosomal subunit protein eS7", "gene_name": "RPS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H6R4-1", "protein_name": "Nucleolar protein 6", "gene_name": "NOL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8K4F6-1", "protein_name": "28S rRNA (cytosine-C(5))-methyltransferase", "gene_name": "Nsun5", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8TED0-1", "protein_name": "U3 small nucleolar RNA-associated protein 15 homolog", "gene_name": "UTP15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UJK0-1", "protein_name": "18S rRNA aminocarboxypropyltransferase", "gene_name": "TSR3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15213-1", "protein_name": "WD repeat-containing protein 46", "gene_name": "WDR46", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NXG2-1", "protein_name": "THUMP domain-containing protein 1", "gene_name": "THUMPD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NI36-1", "protein_name": "WD repeat-containing protein 36", "gene_name": "WDR36", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNX4-1", "protein_name": "WD repeat-containing protein 3", "gene_name": "WDR3", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q96EU6", "url": "https://www.uniprot.org/uniprotkb/Q96EU6" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.11978965", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 63 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": 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"total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Conserved stem II of the box C/D motif is essential for nucleolar localization and is required, along with the 15.5K protein, for the hierarchical assembly of the box C/D snoRNP.", "journal": "Molecular and cellular biology", "date": "2002", "authors": "Watkins NJ, Dickmanns A, Luhrmann R", "reference": { "type": "PubMed", "id": "12417735", "url": "https://pubmed.ncbi.nlm.nih.gov/12417735" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q96EU6-1", "protein_name": "Ribosomal RNA processing protein 36 homolog", "gene_name": "RRP36", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3A4-1", "protein_name": "Ribosomal RNA-processing protein 7 homolog A", "gene_name": "RRP7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46781-1", "protein_name": "Small ribosomal subunit protein uS4", "gene_name": "RPS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12788-1", "protein_name": "Transducin beta-like protein 3", "gene_name": "TBL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UI30-1", "protein_name": "Multifunctional methyltransferase subunit TRM112-like protein", "gene_name": "TRMT112", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NX24-1", "protein_name": "H/ACA ribonucleoprotein complex subunit 2", "gene_name": "NHP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00567-1", "protein_name": "Nucleolar protein 56", "gene_name": "NOP56", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55769-1", "protein_name": "NHP2-like protein 1", "gene_name": "SNU13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPE3-1", "protein_name": "H/ACA ribonucleoprotein complex subunit 3", "gene_name": "NOP10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46087-1", "protein_name": "28S rRNA (cytosine(4447)-C(5))-methyltransferase", "gene_name": "NOP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3A2-1", "protein_name": "Probable U3 small nucleolar RNA-associated protein 11", "gene_name": "UTP11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NQZ2-1", "protein_name": "Something about silencing protein 10", "gene_name": "UTP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q68CQ4-1", "protein_name": "U3 small nucleolar RNA-associated protein 25 homolog", "gene_name": "UTP25", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IY37-1", "protein_name": "Probable ATP-dependent RNA helicase DHX37", "gene_name": "DHX37", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y324-1", "protein_name": "rRNA-processing protein FCF1 homolog", "gene_name": "FCF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92979-1", "protein_name": "Ribosomal RNA small subunit methyltransferase NEP1", "gene_name": "EMG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5TAP6-1", "protein_name": "U3 small nucleolar RNA-associated protein 14 homolog C", "gene_name": "UTP14C", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43709-1", "protein_name": "18S rRNA (guanine-N(7))-methyltransferase", "gene_name": "BUD23", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15269-1", "protein_name": "Periodic tryptophan protein 2 homolog", "gene_name": "PWP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0A0-1", "protein_name": "RNA cytidine acetyltransferase", "gene_name": "NAT10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NRX1-1", "protein_name": "RNA-binding protein PNO1", "gene_name": "PNO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNQ2-1", "protein_name": "Dimethyladenosine transferase", "gene_name": "DIMT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60832-1", "protein_name": "H/ACA ribonucleoprotein complex subunit DKC1", "gene_name": "DKC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22087-1", "protein_name": "rRNA 2'-O-methyltransferase fibrillarin", "gene_name": "FBL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0S4-1", "protein_name": "Probable ATP-dependent RNA helicase DDX47", "gene_name": "DDX47", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62263-1", "protein_name": "Small ribosomal subunit protein uS11", "gene_name": "RPS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2R4-1", "protein_name": "Probable ATP-dependent RNA helicase DDX52", "gene_name": "DDX52", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96G21-1", "protein_name": "U3 small nucleolar ribonucleoprotein protein IMP4", "gene_name": "IMP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NY12-1", "protein_name": "H/ACA ribonucleoprotein complex subunit 1", "gene_name": "GAR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15880-1", "protein_name": "Small ribosomal subunit protein uS5", "gene_name": "RPS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BVJ6-1", "protein_name": "U3 small nucleolar RNA-associated protein 14 homolog A", "gene_name": "UTP14A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5J1-1", "protein_name": "U3 small nucleolar RNA-associated protein 18 homolog", "gene_name": "UTP18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NYH9-1", "protein_name": "U3 small nucleolar RNA-associated protein 6 homolog", "gene_name": "UTP6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWA0-1", "protein_name": "WD repeat-containing protein 75", "gene_name": "WDR75", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BVI4-1", "protein_name": "Nucleolar complex protein 4 homolog", "gene_name": "NOC4L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14692-1", "protein_name": "Ribosome biogenesis protein BMS1 homolog", "gene_name": "BMS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6V7-1", "protein_name": "Probable ATP-dependent RNA helicase DDX49", "gene_name": "DDX49", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00566-1", "protein_name": "U3 small nucleolar ribonucleoprotein protein MPP10", "gene_name": "MPHOSPH10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H583-1", "protein_name": "HEAT repeat-containing protein 1", "gene_name": "HEATR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62753-1", "protein_name": "Small ribosomal subunit protein eS6", "gene_name": "RPS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75691-1", "protein_name": "Small subunit processome component 20 homolog", "gene_name": "UTP20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2P8-1", "protein_name": "RNA 3'-terminal phosphate cyclase-like protein", "gene_name": "RCL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14690-1", "protein_name": "Protein RRP5 homolog", "gene_name": "PDCD11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969X6-1", "protein_name": "U3 small nucleolar RNA-associated protein 4 homolog", "gene_name": "UTP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2X3-1", "protein_name": "Nucleolar protein 58", "gene_name": "NOP58", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H8H0-1", "protein_name": "Nucleolar protein 11", "gene_name": "NOL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78316-1", "protein_name": "Nucleolar protein 14", "gene_name": "NOP14", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43818-1", "protein_name": "U3 small nucleolar RNA-interacting protein 2", "gene_name": "RRP9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15061-1", "protein_name": "WD repeat-containing protein 43", "gene_name": "WDR43", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NV31-1", "protein_name": "U3 small nucleolar ribonucleoprotein protein IMP3", "gene_name": "IMP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NV06-1", "protein_name": "DDB1- and CUL4-associated factor 13", "gene_name": "DCAF13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13601-1", "protein_name": "KRR1 small subunit processome component homolog", "gene_name": "KRR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62081-1", "protein_name": "Small ribosomal subunit protein eS7", "gene_name": "RPS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H6R4-1", "protein_name": "Nucleolar protein 6", "gene_name": "NOL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TED0-1", "protein_name": "U3 small nucleolar RNA-associated protein 15 homolog", "gene_name": "UTP15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UJK0-1", "protein_name": "18S rRNA aminocarboxypropyltransferase", "gene_name": "TSR3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15213-1", "protein_name": "WD repeat-containing protein 46", "gene_name": "WDR46", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NXG2-1", "protein_name": "THUMP domain-containing protein 1", "gene_name": "THUMPD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NI36-1", "protein_name": "WD repeat-containing protein 36", "gene_name": "WDR36", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNX4-1", "protein_name": "WD repeat-containing protein 3", "gene_name": "WDR3", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q96EU6", "url": "https://www.uniprot.org/uniprotkb/Q96EU6" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.12417735", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 60 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Human box H/ACA pseudouridylation guide RNA machinery.", "journal": "Molecular and cellular biology", "date": "2004", "authors": "Kiss AM, Jady 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"gene_name": "UTP25", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IY37-1", "protein_name": "Probable ATP-dependent RNA helicase DHX37", "gene_name": "DHX37", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y324-1", "protein_name": "rRNA-processing protein FCF1 homolog", "gene_name": "FCF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92979-1", "protein_name": "Ribosomal RNA small subunit methyltransferase NEP1", "gene_name": "EMG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5TAP6-1", "protein_name": "U3 small nucleolar RNA-associated protein 14 homolog C", "gene_name": "UTP14C", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43709-1", "protein_name": "18S rRNA (guanine-N(7))-methyltransferase", "gene_name": "BUD23", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15269-1", "protein_name": "Periodic tryptophan protein 2 homolog", "gene_name": "PWP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0A0-1", "protein_name": "RNA cytidine acetyltransferase", "gene_name": "NAT10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NRX1-1", "protein_name": "RNA-binding protein PNO1", "gene_name": "PNO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNQ2-1", "protein_name": "Dimethyladenosine transferase", "gene_name": "DIMT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60832-1", "protein_name": "H/ACA ribonucleoprotein complex subunit DKC1", "gene_name": "DKC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22087-1", "protein_name": "rRNA 2'-O-methyltransferase fibrillarin", "gene_name": "FBL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0S4-1", "protein_name": "Probable ATP-dependent RNA helicase DDX47", "gene_name": "DDX47", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62263-1", "protein_name": "Small ribosomal subunit protein uS11", "gene_name": "RPS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2R4-1", "protein_name": "Probable ATP-dependent RNA helicase DDX52", "gene_name": "DDX52", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96G21-1", "protein_name": "U3 small nucleolar ribonucleoprotein protein IMP4", "gene_name": "IMP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NY12-1", "protein_name": "H/ACA ribonucleoprotein complex subunit 1", "gene_name": "GAR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15880-1", "protein_name": "Small ribosomal subunit protein uS5", "gene_name": "RPS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BVJ6-1", "protein_name": "U3 small nucleolar RNA-associated protein 14 homolog A", "gene_name": "UTP14A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5J1-1", "protein_name": "U3 small nucleolar RNA-associated protein 18 homolog", "gene_name": "UTP18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NYH9-1", "protein_name": "U3 small nucleolar RNA-associated protein 6 homolog", "gene_name": "UTP6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWA0-1", "protein_name": "WD repeat-containing protein 75", "gene_name": "WDR75", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BVI4-1", "protein_name": "Nucleolar complex protein 4 homolog", "gene_name": "NOC4L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14692-1", "protein_name": "Ribosome biogenesis protein BMS1 homolog", "gene_name": "BMS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6V7-1", "protein_name": "Probable ATP-dependent RNA helicase DDX49", "gene_name": "DDX49", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00566-1", "protein_name": "U3 small nucleolar ribonucleoprotein protein MPP10", "gene_name": "MPHOSPH10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H583-1", "protein_name": "HEAT repeat-containing protein 1", "gene_name": "HEATR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62753-1", "protein_name": "Small ribosomal subunit protein eS6", "gene_name": "RPS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75691-1", "protein_name": "Small subunit processome component 20 homolog", "gene_name": "UTP20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2P8-1", "protein_name": "RNA 3'-terminal phosphate cyclase-like protein", "gene_name": "RCL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14690-1", "protein_name": "Protein RRP5 homolog", "gene_name": "PDCD11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969X6-1", "protein_name": "U3 small nucleolar RNA-associated protein 4 homolog", "gene_name": "UTP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2X3-1", "protein_name": "Nucleolar protein 58", "gene_name": "NOP58", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H8H0-1", "protein_name": "Nucleolar protein 11", "gene_name": "NOL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78316-1", "protein_name": "Nucleolar protein 14", "gene_name": "NOP14", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43818-1", "protein_name": "U3 small nucleolar RNA-interacting protein 2", "gene_name": "RRP9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15061-1", "protein_name": "WD repeat-containing protein 43", "gene_name": "WDR43", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NV31-1", "protein_name": "U3 small nucleolar ribonucleoprotein protein IMP3", "gene_name": "IMP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NV06-1", "protein_name": "DDB1- and CUL4-associated factor 13", "gene_name": "DCAF13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13601-1", "protein_name": "KRR1 small subunit processome component homolog", "gene_name": "KRR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62081-1", "protein_name": "Small ribosomal subunit protein eS7", "gene_name": "RPS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H6R4-1", "protein_name": "Nucleolar protein 6", "gene_name": "NOL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TED0-1", "protein_name": "U3 small nucleolar RNA-associated protein 15 homolog", "gene_name": "UTP15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UJK0-1", "protein_name": "18S rRNA aminocarboxypropyltransferase", "gene_name": "TSR3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15213-1", "protein_name": "WD repeat-containing protein 46", "gene_name": "WDR46", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NXG2-1", "protein_name": "THUMP domain-containing protein 1", "gene_name": "THUMPD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NI36-1", "protein_name": "WD repeat-containing protein 36", "gene_name": "WDR36", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNX4-1", "protein_name": "WD repeat-containing protein 3", "gene_name": "WDR3", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q96EU6", "url": "https://www.uniprot.org/uniprotkb/Q96EU6" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.15199136", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 60 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": 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Natl. Acad. Sci. U.S.A.", "date": "2005", "authors": "Comtesse Nicole, Zippel Andrea, Walle Sascha, Monz Dominik, Backes Christina, Fischer Ulrike, Mayer Jens, Ludwig Nicole, Hildebrandt Andreas, Keller Andreas, Steudel Wolf-Ingo, Lenhof Hans-Peter, Meese Eckart", "reference": { "type": "PubMed", "id": "15983380", "url": "https://pubmed.ncbi.nlm.nih.gov/15983380" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q96EU6-1", "protein_name": "Ribosomal RNA processing protein 36 homolog", "gene_name": "RRP36", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q96EU6", "url": "https://www.uniprot.org/uniprotkb/Q96EU6" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.15983380", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs.", "journal": "Nucleic acids research", "date": "2006", "authors": "Lestrade L, Weber MJ", "reference": { "type": "PubMed", "id": "16381836", "url": "https://pubmed.ncbi.nlm.nih.gov/16381836" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q96EU6-1", "protein_name": "Ribosomal RNA processing protein 36 homolog", "gene_name": "RRP36", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3A4-1", "protein_name": "Ribosomal RNA-processing protein 7 homolog A", "gene_name": "RRP7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46781-1", "protein_name": "Small ribosomal subunit protein uS4", "gene_name": "RPS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12788-1", "protein_name": "Transducin beta-like protein 3", "gene_name": "TBL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UI30-1", "protein_name": "Multifunctional methyltransferase subunit TRM112-like protein", "gene_name": "TRMT112", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NX24-1", "protein_name": "H/ACA ribonucleoprotein complex subunit 2", "gene_name": "NHP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00567-1", "protein_name": "Nucleolar protein 56", "gene_name": "NOP56", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55769-1", "protein_name": "NHP2-like protein 1", "gene_name": "SNU13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPE3-1", "protein_name": "H/ACA ribonucleoprotein complex subunit 3", "gene_name": "NOP10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46087-1", "protein_name": "28S rRNA (cytosine(4447)-C(5))-methyltransferase", "gene_name": "NOP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3A2-1", "protein_name": "Probable U3 small nucleolar RNA-associated protein 11", "gene_name": "UTP11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NQZ2-1", "protein_name": "Something about silencing protein 10", "gene_name": "UTP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q68CQ4-1", "protein_name": "U3 small nucleolar RNA-associated protein 25 homolog", "gene_name": "UTP25", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IY37-1", "protein_name": "Probable ATP-dependent RNA helicase DHX37", "gene_name": "DHX37", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y324-1", "protein_name": "rRNA-processing protein FCF1 homolog", "gene_name": "FCF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92979-1", "protein_name": "Ribosomal RNA small subunit methyltransferase NEP1", "gene_name": "EMG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5TAP6-1", "protein_name": "U3 small nucleolar RNA-associated protein 14 homolog C", "gene_name": "UTP14C", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43709-1", "protein_name": "18S rRNA (guanine-N(7))-methyltransferase", "gene_name": "BUD23", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15269-1", "protein_name": "Periodic tryptophan protein 2 homolog", "gene_name": "PWP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0A0-1", "protein_name": "RNA cytidine acetyltransferase", "gene_name": "NAT10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NRX1-1", "protein_name": "RNA-binding protein PNO1", "gene_name": "PNO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNQ2-1", "protein_name": "Dimethyladenosine transferase", "gene_name": "DIMT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60832-1", "protein_name": "H/ACA ribonucleoprotein complex subunit DKC1", "gene_name": "DKC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22087-1", "protein_name": "rRNA 2'-O-methyltransferase fibrillarin", "gene_name": "FBL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0S4-1", "protein_name": "Probable ATP-dependent RNA helicase DDX47", "gene_name": "DDX47", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62263-1", "protein_name": "Small ribosomal subunit protein uS11", "gene_name": "RPS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2R4-1", "protein_name": "Probable ATP-dependent RNA helicase DDX52", "gene_name": "DDX52", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96G21-1", "protein_name": "U3 small nucleolar ribonucleoprotein protein IMP4", "gene_name": "IMP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NY12-1", "protein_name": "H/ACA ribonucleoprotein complex subunit 1", "gene_name": "GAR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15880-1", "protein_name": "Small ribosomal subunit protein uS5", "gene_name": "RPS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BVJ6-1", "protein_name": "U3 small nucleolar RNA-associated protein 14 homolog A", "gene_name": "UTP14A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5J1-1", "protein_name": "U3 small nucleolar RNA-associated protein 18 homolog", "gene_name": "UTP18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NYH9-1", "protein_name": "U3 small nucleolar RNA-associated protein 6 homolog", "gene_name": "UTP6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWA0-1", "protein_name": "WD repeat-containing protein 75", "gene_name": "WDR75", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BVI4-1", "protein_name": "Nucleolar complex protein 4 homolog", "gene_name": "NOC4L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14692-1", "protein_name": "Ribosome biogenesis protein BMS1 homolog", "gene_name": "BMS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6V7-1", "protein_name": "Probable ATP-dependent RNA helicase DDX49", "gene_name": "DDX49", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00566-1", "protein_name": "U3 small nucleolar ribonucleoprotein protein MPP10", "gene_name": "MPHOSPH10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H583-1", "protein_name": "HEAT repeat-containing protein 1", "gene_name": "HEATR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62753-1", "protein_name": "Small ribosomal subunit protein eS6", "gene_name": "RPS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75691-1", "protein_name": "Small subunit processome component 20 homolog", "gene_name": "UTP20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2P8-1", "protein_name": "RNA 3'-terminal phosphate cyclase-like protein", "gene_name": "RCL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14690-1", "protein_name": "Protein RRP5 homolog", "gene_name": "PDCD11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969X6-1", "protein_name": "U3 small nucleolar RNA-associated protein 4 homolog", "gene_name": "UTP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2X3-1", "protein_name": "Nucleolar protein 58", "gene_name": "NOP58", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H8H0-1", "protein_name": "Nucleolar protein 11", "gene_name": "NOL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78316-1", "protein_name": "Nucleolar protein 14", "gene_name": "NOP14", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43818-1", "protein_name": "U3 small nucleolar RNA-interacting protein 2", "gene_name": "RRP9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15061-1", "protein_name": "WD repeat-containing protein 43", "gene_name": "WDR43", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NV31-1", "protein_name": "U3 small nucleolar ribonucleoprotein protein IMP3", "gene_name": "IMP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NV06-1", "protein_name": "DDB1- and CUL4-associated factor 13", "gene_name": "DCAF13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13601-1", "protein_name": "KRR1 small subunit processome component homolog", "gene_name": "KRR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62081-1", "protein_name": "Small ribosomal subunit protein eS7", "gene_name": "RPS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H6R4-1", "protein_name": "Nucleolar protein 6", "gene_name": "NOL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TED0-1", "protein_name": "U3 small nucleolar RNA-associated protein 15 homolog", "gene_name": "UTP15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UJK0-1", "protein_name": "18S rRNA aminocarboxypropyltransferase", "gene_name": "TSR3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15213-1", "protein_name": "WD repeat-containing protein 46", "gene_name": "WDR46", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NXG2-1", "protein_name": "THUMP domain-containing protein 1", "gene_name": "THUMPD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NI36-1", "protein_name": "WD repeat-containing protein 36", "gene_name": "WDR36", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNX4-1", "protein_name": "WD repeat-containing protein 3", "gene_name": "WDR3", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q96EU6", "url": "https://www.uniprot.org/uniprotkb/Q96EU6" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.16381836", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 60 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Protein-protein and protein-RNA contacts both contribute to the 15.5K-mediated assembly of the U4/U6 snRNP and the box C/D snoRNPs.", "journal": "Molecular and cellular biology", "date": "2006", "authors": "Schultz A, Nottrott S, Watkins NJ, Luhrmann R", "reference": { "type": "PubMed", "id": "16782898", "url": "https://pubmed.ncbi.nlm.nih.gov/16782898" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q96EU6-1", "protein_name": "Ribosomal RNA processing protein 36 homolog", "gene_name": "RRP36", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3A4-1", "protein_name": "Ribosomal RNA-processing protein 7 homolog A", "gene_name": "RRP7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46781-1", "protein_name": "Small ribosomal subunit protein uS4", "gene_name": "RPS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12788-1", "protein_name": "Transducin beta-like protein 3", "gene_name": "TBL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UI30-1", "protein_name": "Multifunctional methyltransferase subunit TRM112-like protein", "gene_name": "TRMT112", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NX24-1", "protein_name": "H/ACA ribonucleoprotein complex subunit 2", "gene_name": "NHP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00567-1", "protein_name": "Nucleolar protein 56", "gene_name": "NOP56", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55769-1", "protein_name": "NHP2-like protein 1", "gene_name": "SNU13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPE3-1", "protein_name": "H/ACA ribonucleoprotein complex subunit 3", "gene_name": "NOP10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46087-1", "protein_name": "28S rRNA (cytosine(4447)-C(5))-methyltransferase", "gene_name": "NOP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3A2-1", "protein_name": "Probable U3 small nucleolar RNA-associated protein 11", "gene_name": "UTP11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NQZ2-1", "protein_name": "Something about silencing protein 10", "gene_name": "UTP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q68CQ4-1", "protein_name": "U3 small nucleolar RNA-associated protein 25 homolog", "gene_name": "UTP25", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IY37-1", "protein_name": "Probable ATP-dependent RNA helicase DHX37", "gene_name": "DHX37", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y324-1", "protein_name": "rRNA-processing protein FCF1 homolog", "gene_name": "FCF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92979-1", "protein_name": "Ribosomal RNA small subunit methyltransferase NEP1", "gene_name": "EMG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5TAP6-1", "protein_name": "U3 small nucleolar RNA-associated protein 14 homolog C", "gene_name": "UTP14C", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43709-1", "protein_name": "18S rRNA (guanine-N(7))-methyltransferase", "gene_name": "BUD23", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15269-1", "protein_name": "Periodic tryptophan protein 2 homolog", "gene_name": "PWP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0A0-1", "protein_name": "RNA cytidine acetyltransferase", "gene_name": "NAT10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NRX1-1", "protein_name": "RNA-binding protein PNO1", "gene_name": "PNO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNQ2-1", "protein_name": "Dimethyladenosine transferase", "gene_name": "DIMT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60832-1", "protein_name": "H/ACA ribonucleoprotein complex subunit DKC1", "gene_name": "DKC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22087-1", "protein_name": "rRNA 2'-O-methyltransferase fibrillarin", "gene_name": "FBL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0S4-1", "protein_name": "Probable ATP-dependent RNA helicase DDX47", "gene_name": "DDX47", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62263-1", "protein_name": "Small ribosomal subunit protein uS11", "gene_name": "RPS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2R4-1", "protein_name": "Probable ATP-dependent RNA helicase DDX52", "gene_name": "DDX52", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96G21-1", "protein_name": "U3 small nucleolar ribonucleoprotein protein IMP4", "gene_name": "IMP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NY12-1", "protein_name": "H/ACA ribonucleoprotein complex subunit 1", "gene_name": "GAR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15880-1", "protein_name": "Small ribosomal subunit protein uS5", "gene_name": "RPS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BVJ6-1", "protein_name": "U3 small nucleolar RNA-associated protein 14 homolog A", "gene_name": "UTP14A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5J1-1", "protein_name": "U3 small nucleolar RNA-associated protein 18 homolog", "gene_name": "UTP18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NYH9-1", "protein_name": "U3 small nucleolar RNA-associated protein 6 homolog", "gene_name": "UTP6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWA0-1", "protein_name": "WD repeat-containing protein 75", "gene_name": "WDR75", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BVI4-1", "protein_name": "Nucleolar complex protein 4 homolog", "gene_name": "NOC4L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14692-1", "protein_name": "Ribosome biogenesis protein BMS1 homolog", "gene_name": "BMS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6V7-1", "protein_name": "Probable ATP-dependent RNA helicase DDX49", "gene_name": "DDX49", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00566-1", "protein_name": "U3 small nucleolar ribonucleoprotein protein MPP10", "gene_name": "MPHOSPH10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H583-1", "protein_name": "HEAT repeat-containing protein 1", "gene_name": "HEATR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62753-1", "protein_name": "Small ribosomal subunit protein eS6", "gene_name": "RPS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75691-1", "protein_name": "Small subunit processome component 20 homolog", "gene_name": "UTP20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2P8-1", "protein_name": "RNA 3'-terminal phosphate cyclase-like protein", "gene_name": "RCL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14690-1", "protein_name": "Protein RRP5 homolog", "gene_name": "PDCD11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969X6-1", "protein_name": "U3 small nucleolar RNA-associated protein 4 homolog", "gene_name": "UTP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2X3-1", "protein_name": "Nucleolar protein 58", "gene_name": "NOP58", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H8H0-1", "protein_name": "Nucleolar protein 11", "gene_name": "NOL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78316-1", "protein_name": "Nucleolar protein 14", "gene_name": "NOP14", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43818-1", "protein_name": "U3 small nucleolar RNA-interacting protein 2", "gene_name": "RRP9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15061-1", "protein_name": "WD repeat-containing protein 43", "gene_name": "WDR43", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NV31-1", "protein_name": "U3 small nucleolar ribonucleoprotein protein IMP3", "gene_name": "IMP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NV06-1", "protein_name": "DDB1- and CUL4-associated factor 13", "gene_name": "DCAF13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13601-1", "protein_name": "KRR1 small subunit processome component homolog", "gene_name": "KRR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62081-1", "protein_name": "Small ribosomal subunit protein eS7", "gene_name": "RPS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H6R4-1", "protein_name": "Nucleolar protein 6", "gene_name": "NOL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TED0-1", "protein_name": "U3 small nucleolar RNA-associated protein 15 homolog", "gene_name": "UTP15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UJK0-1", "protein_name": "18S rRNA aminocarboxypropyltransferase", "gene_name": "TSR3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15213-1", "protein_name": "WD repeat-containing protein 46", "gene_name": "WDR46", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NXG2-1", "protein_name": "THUMP domain-containing protein 1", "gene_name": "THUMPD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NI36-1", "protein_name": "WD repeat-containing protein 36", "gene_name": "WDR36", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNX4-1", "protein_name": "WD repeat-containing protein 3", "gene_name": "WDR3", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q96EU6", "url": "https://www.uniprot.org/uniprotkb/Q96EU6" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.16782898", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 60 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A dynamic scaffold of pre-snoRNP factors facilitates human box C/D snoRNP assembly.", "journal": "Molecular and cellular biology", "date": "2007", "authors": "McKeegan KS, Debieux CM, Boulon S, Bertrand E, Watkins NJ", "reference": { "type": "PubMed", "id": "17636026", "url": "https://pubmed.ncbi.nlm.nih.gov/17636026" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q96EU6-1", "protein_name": "Ribosomal RNA processing protein 36 homolog", "gene_name": "RRP36", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3A4-1", "protein_name": "Ribosomal RNA-processing protein 7 homolog A", "gene_name": "RRP7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46781-1", "protein_name": "Small ribosomal subunit protein uS4", "gene_name": "RPS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12788-1", "protein_name": "Transducin beta-like protein 3", "gene_name": "TBL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UI30-1", "protein_name": "Multifunctional methyltransferase subunit TRM112-like protein", "gene_name": "TRMT112", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NX24-1", "protein_name": "H/ACA ribonucleoprotein complex subunit 2", "gene_name": "NHP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00567-1", "protein_name": "Nucleolar protein 56", "gene_name": "NOP56", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55769-1", "protein_name": "NHP2-like protein 1", "gene_name": "SNU13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPE3-1", "protein_name": "H/ACA ribonucleoprotein complex subunit 3", "gene_name": "NOP10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46087-1", "protein_name": "28S rRNA (cytosine(4447)-C(5))-methyltransferase", "gene_name": "NOP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3A2-1", "protein_name": "Probable U3 small nucleolar RNA-associated protein 11", "gene_name": "UTP11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NQZ2-1", "protein_name": "Something about silencing protein 10", "gene_name": "UTP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q68CQ4-1", "protein_name": "U3 small nucleolar RNA-associated protein 25 homolog", "gene_name": "UTP25", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IY37-1", "protein_name": "Probable ATP-dependent RNA helicase DHX37", "gene_name": "DHX37", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y324-1", "protein_name": "rRNA-processing protein FCF1 homolog", "gene_name": "FCF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92979-1", "protein_name": "Ribosomal RNA small subunit methyltransferase NEP1", "gene_name": "EMG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5TAP6-1", "protein_name": "U3 small nucleolar RNA-associated protein 14 homolog C", "gene_name": "UTP14C", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43709-1", "protein_name": "18S rRNA (guanine-N(7))-methyltransferase", "gene_name": "BUD23", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15269-1", "protein_name": "Periodic tryptophan protein 2 homolog", "gene_name": "PWP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0A0-1", "protein_name": "RNA cytidine acetyltransferase", "gene_name": "NAT10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NRX1-1", "protein_name": "RNA-binding protein PNO1", "gene_name": "PNO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNQ2-1", "protein_name": "Dimethyladenosine transferase", "gene_name": "DIMT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60832-1", "protein_name": "H/ACA ribonucleoprotein complex subunit DKC1", "gene_name": "DKC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22087-1", "protein_name": "rRNA 2'-O-methyltransferase fibrillarin", "gene_name": "FBL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0S4-1", "protein_name": "Probable ATP-dependent RNA helicase DDX47", "gene_name": "DDX47", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NWK9-1", "protein_name": "Box C/D snoRNA protein 1", "gene_name": "ZNHIT6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y265-1", "protein_name": "RuvB-like 1", "gene_name": "RUVBL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62263-1", "protein_name": "Small ribosomal subunit protein uS11", "gene_name": "RPS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2R4-1", "protein_name": "Probable ATP-dependent RNA helicase DDX52", "gene_name": "DDX52", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96G21-1", "protein_name": "U3 small nucleolar ribonucleoprotein protein IMP4", "gene_name": "IMP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NY12-1", "protein_name": "H/ACA ribonucleoprotein complex subunit 1", "gene_name": "GAR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15880-1", "protein_name": "Small ribosomal subunit protein uS5", "gene_name": "RPS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NWS0-1", "protein_name": "PIH1 domain-containing protein 1", "gene_name": "PIH1D1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BVJ6-1", "protein_name": "U3 small nucleolar RNA-associated protein 14 homolog A", "gene_name": "UTP14A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5J1-1", "protein_name": "U3 small nucleolar RNA-associated protein 18 homolog", "gene_name": "UTP18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NYH9-1", "protein_name": "U3 small nucleolar RNA-associated protein 6 homolog", "gene_name": "UTP6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWA0-1", "protein_name": "WD repeat-containing protein 75", "gene_name": "WDR75", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BVI4-1", "protein_name": "Nucleolar complex protein 4 homolog", "gene_name": "NOC4L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14692-1", "protein_name": "Ribosome biogenesis protein BMS1 homolog", "gene_name": "BMS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6V7-1", "protein_name": "Probable ATP-dependent RNA helicase DDX49", "gene_name": "DDX49", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00566-1", "protein_name": "U3 small nucleolar ribonucleoprotein protein MPP10", "gene_name": "MPHOSPH10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H583-1", "protein_name": "HEAT repeat-containing protein 1", "gene_name": "HEATR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62753-1", "protein_name": "Small ribosomal subunit protein eS6", "gene_name": "RPS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75691-1", "protein_name": "Small subunit processome component 20 homolog", "gene_name": "UTP20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2P8-1", "protein_name": "RNA 3'-terminal phosphate cyclase-like protein", "gene_name": "RCL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14690-1", "protein_name": "Protein RRP5 homolog", "gene_name": "PDCD11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969X6-1", "protein_name": "U3 small nucleolar RNA-associated protein 4 homolog", "gene_name": "UTP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2X3-1", "protein_name": "Nucleolar protein 58", "gene_name": "NOP58", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H8H0-1", "protein_name": "Nucleolar protein 11", "gene_name": "NOL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78316-1", "protein_name": "Nucleolar protein 14", "gene_name": "NOP14", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43818-1", "protein_name": "U3 small nucleolar RNA-interacting protein 2", "gene_name": "RRP9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15061-1", "protein_name": "WD repeat-containing protein 43", "gene_name": "WDR43", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NV31-1", "protein_name": "U3 small nucleolar ribonucleoprotein protein IMP3", "gene_name": "IMP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NV06-1", "protein_name": "DDB1- and CUL4-associated factor 13", "gene_name": "DCAF13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13601-1", "protein_name": "KRR1 small subunit processome component homolog", "gene_name": "KRR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62081-1", "protein_name": "Small ribosomal subunit protein eS7", "gene_name": "RPS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H6R4-1", "protein_name": "Nucleolar protein 6", "gene_name": "NOL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TED0-1", "protein_name": "U3 small nucleolar RNA-associated protein 15 homolog", "gene_name": "UTP15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UJK0-1", "protein_name": "18S rRNA aminocarboxypropyltransferase", "gene_name": "TSR3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15213-1", "protein_name": "WD repeat-containing protein 46", "gene_name": "WDR46", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NXG2-1", "protein_name": "THUMP domain-containing protein 1", "gene_name": "THUMPD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NI36-1", "protein_name": "WD repeat-containing protein 36", "gene_name": "WDR36", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNX4-1", "protein_name": "WD repeat-containing protein 3", "gene_name": "WDR3", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q96EU6", "url": "https://www.uniprot.org/uniprotkb/Q96EU6" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.17636026", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 63 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Functionality and substrate specificity of human box H/ACA guide RNAs.", "journal": "RNA (New York, N.Y.)", "date": "2009", "authors": "Xiao M, Yang C, Schattner P, Yu YT", "reference": { "type": "PubMed", "id": "19033376", "url": "https://pubmed.ncbi.nlm.nih.gov/19033376" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q96EU6-1", "protein_name": "Ribosomal RNA processing protein 36 homolog", "gene_name": "RRP36", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3A4-1", "protein_name": "Ribosomal RNA-processing protein 7 homolog A", "gene_name": "RRP7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46781-1", "protein_name": "Small ribosomal subunit protein uS4", "gene_name": "RPS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12788-1", "protein_name": "Transducin beta-like protein 3", "gene_name": "TBL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UI30-1", "protein_name": "Multifunctional methyltransferase subunit TRM112-like protein", "gene_name": "TRMT112", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NX24-1", "protein_name": "H/ACA 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"protein_name": "U3 small nucleolar RNA-associated protein 15 homolog", "gene_name": "UTP15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UJK0-1", "protein_name": "18S rRNA aminocarboxypropyltransferase", "gene_name": "TSR3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15213-1", "protein_name": "WD repeat-containing protein 46", "gene_name": "WDR46", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NXG2-1", "protein_name": "THUMP domain-containing protein 1", "gene_name": "THUMPD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NI36-1", "protein_name": "WD repeat-containing protein 36", "gene_name": "WDR36", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNX4-1", "protein_name": "WD repeat-containing protein 3", "gene_name": "WDR3", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q96EU6", "url": "https://www.uniprot.org/uniprotkb/Q96EU6" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.19463982", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 60 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The ribosome assembly factor Nep1 responsible for Bowen-Conradi syndrome is a pseudouridine-N1-specific methyltransferase.", "journal": "Nucleic acids research", "date": "2010", "authors": "Wurm JP, Meyer B, Bahr U, Held M, Frolow O, Kotter P, Engels JW, Heckel A, Karas M, Entian KD, Wohnert J", "reference": { "type": "PubMed", "id": "20047967", "url": "https://pubmed.ncbi.nlm.nih.gov/20047967" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q96EU6-1", "protein_name": "Ribosomal RNA processing protein 36 homolog", "gene_name": "RRP36", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3A4-1", "protein_name": "Ribosomal RNA-processing protein 7 homolog A", "gene_name": "RRP7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46781-1", "protein_name": "Small ribosomal subunit protein uS4", "gene_name": "RPS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12788-1", "protein_name": "Transducin beta-like protein 3", "gene_name": "TBL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UI30-1", "protein_name": "Multifunctional methyltransferase subunit TRM112-like protein", "gene_name": "TRMT112", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NX24-1", "protein_name": "H/ACA ribonucleoprotein complex subunit 2", "gene_name": "NHP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00567-1", "protein_name": "Nucleolar protein 56", "gene_name": "NOP56", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55769-1", "protein_name": "NHP2-like protein 1", "gene_name": "SNU13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPE3-1", "protein_name": "H/ACA ribonucleoprotein complex subunit 3", "gene_name": "NOP10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46087-1", "protein_name": "28S rRNA (cytosine(4447)-C(5))-methyltransferase", "gene_name": "NOP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3A2-1", "protein_name": "Probable U3 small nucleolar RNA-associated protein 11", "gene_name": "UTP11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NQZ2-1", "protein_name": "Something about silencing protein 10", "gene_name": "UTP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q68CQ4-1", "protein_name": "U3 small nucleolar RNA-associated protein 25 homolog", "gene_name": "UTP25", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IY37-1", "protein_name": "Probable ATP-dependent RNA helicase DHX37", "gene_name": "DHX37", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y324-1", "protein_name": "rRNA-processing protein FCF1 homolog", "gene_name": "FCF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92979-1", "protein_name": "Ribosomal RNA small subunit methyltransferase NEP1", "gene_name": "EMG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5TAP6-1", "protein_name": "U3 small nucleolar RNA-associated protein 14 homolog C", "gene_name": "UTP14C", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43709-1", "protein_name": "18S rRNA (guanine-N(7))-methyltransferase", "gene_name": "BUD23", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15269-1", "protein_name": "Periodic tryptophan protein 2 homolog", "gene_name": "PWP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0A0-1", "protein_name": "RNA cytidine acetyltransferase", "gene_name": "NAT10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NRX1-1", "protein_name": "RNA-binding protein PNO1", "gene_name": "PNO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNQ2-1", "protein_name": "Dimethyladenosine transferase", "gene_name": "DIMT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60832-1", "protein_name": "H/ACA ribonucleoprotein complex subunit DKC1", "gene_name": "DKC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22087-1", "protein_name": "rRNA 2'-O-methyltransferase fibrillarin", "gene_name": "FBL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0S4-1", "protein_name": "Probable ATP-dependent RNA helicase DDX47", "gene_name": "DDX47", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62263-1", "protein_name": "Small ribosomal subunit protein uS11", "gene_name": "RPS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2R4-1", "protein_name": "Probable ATP-dependent RNA helicase DDX52", "gene_name": "DDX52", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96G21-1", "protein_name": "U3 small nucleolar ribonucleoprotein protein IMP4", "gene_name": "IMP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NY12-1", "protein_name": "H/ACA ribonucleoprotein complex subunit 1", "gene_name": "GAR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15880-1", "protein_name": "Small ribosomal subunit protein uS5", "gene_name": "RPS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BVJ6-1", "protein_name": "U3 small nucleolar RNA-associated protein 14 homolog A", "gene_name": "UTP14A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5J1-1", "protein_name": "U3 small nucleolar RNA-associated protein 18 homolog", "gene_name": "UTP18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NYH9-1", "protein_name": "U3 small nucleolar RNA-associated protein 6 homolog", "gene_name": "UTP6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWA0-1", "protein_name": "WD repeat-containing protein 75", "gene_name": "WDR75", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BVI4-1", "protein_name": "Nucleolar complex protein 4 homolog", "gene_name": "NOC4L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14692-1", "protein_name": "Ribosome biogenesis protein BMS1 homolog", "gene_name": "BMS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6V7-1", "protein_name": "Probable ATP-dependent RNA helicase DDX49", "gene_name": "DDX49", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00566-1", "protein_name": "U3 small nucleolar ribonucleoprotein protein MPP10", "gene_name": "MPHOSPH10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H583-1", "protein_name": "HEAT repeat-containing protein 1", "gene_name": "HEATR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62753-1", "protein_name": "Small ribosomal subunit protein eS6", "gene_name": "RPS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75691-1", "protein_name": "Small subunit processome component 20 homolog", "gene_name": "UTP20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2P8-1", "protein_name": "RNA 3'-terminal phosphate cyclase-like protein", "gene_name": "RCL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14690-1", "protein_name": "Protein RRP5 homolog", "gene_name": "PDCD11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969X6-1", "protein_name": "U3 small nucleolar RNA-associated protein 4 homolog", "gene_name": "UTP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2X3-1", "protein_name": "Nucleolar protein 58", "gene_name": "NOP58", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H8H0-1", "protein_name": "Nucleolar protein 11", "gene_name": "NOL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78316-1", "protein_name": "Nucleolar protein 14", "gene_name": "NOP14", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43818-1", "protein_name": "U3 small nucleolar RNA-interacting protein 2", "gene_name": "RRP9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15061-1", "protein_name": "WD repeat-containing protein 43", "gene_name": "WDR43", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NV31-1", "protein_name": "U3 small nucleolar ribonucleoprotein protein IMP3", "gene_name": "IMP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NV06-1", "protein_name": "DDB1- and CUL4-associated factor 13", "gene_name": "DCAF13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13601-1", "protein_name": "KRR1 small subunit processome component homolog", "gene_name": "KRR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62081-1", "protein_name": "Small ribosomal subunit protein eS7", "gene_name": "RPS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H6R4-1", "protein_name": "Nucleolar protein 6", "gene_name": "NOL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TED0-1", "protein_name": "U3 small nucleolar RNA-associated protein 15 homolog", "gene_name": "UTP15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UJK0-1", "protein_name": "18S rRNA aminocarboxypropyltransferase", "gene_name": "TSR3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15213-1", "protein_name": "WD repeat-containing protein 46", "gene_name": "WDR46", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NXG2-1", "protein_name": "THUMP domain-containing protein 1", "gene_name": "THUMPD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NI36-1", "protein_name": "WD repeat-containing protein 36", "gene_name": "WDR36", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNX4-1", "protein_name": "WD repeat-containing protein 3", "gene_name": "WDR3", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q96EU6", "url": "https://www.uniprot.org/uniprotkb/Q96EU6" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.20047967", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 60 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "RNA pseudouridylation: new insights into an old modification.", "journal": "Trends in biochemical sciences", "date": "2013", "authors": "Ge J, Yu 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"tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IY37-1", "protein_name": "Probable ATP-dependent RNA helicase DHX37", "gene_name": "DHX37", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y324-1", "protein_name": "rRNA-processing protein FCF1 homolog", "gene_name": "FCF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92979-1", "protein_name": "Ribosomal RNA small subunit methyltransferase NEP1", "gene_name": "EMG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5TAP6-1", "protein_name": "U3 small nucleolar RNA-associated protein 14 homolog C", "gene_name": "UTP14C", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43709-1", "protein_name": "18S rRNA (guanine-N(7))-methyltransferase", "gene_name": "BUD23", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15269-1", "protein_name": "Periodic tryptophan protein 2 homolog", "gene_name": "PWP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0A0-1", "protein_name": "RNA cytidine acetyltransferase", "gene_name": 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}, { "uniprot_canonical_ac": "Q96G21-1", "protein_name": "U3 small nucleolar ribonucleoprotein protein IMP4", "gene_name": "IMP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NY12-1", "protein_name": "H/ACA ribonucleoprotein complex subunit 1", "gene_name": "GAR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15880-1", "protein_name": "Small ribosomal subunit protein uS5", "gene_name": "RPS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BVJ6-1", "protein_name": "U3 small nucleolar RNA-associated protein 14 homolog A", "gene_name": "UTP14A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5J1-1", "protein_name": "U3 small nucleolar RNA-associated protein 18 homolog", "gene_name": "UTP18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NYH9-1", "protein_name": "U3 small nucleolar RNA-associated protein 6 homolog", "gene_name": "UTP6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWA0-1", "protein_name": "WD repeat-containing protein 75", "gene_name": "WDR75", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BVI4-1", "protein_name": "Nucleolar complex protein 4 homolog", "gene_name": "NOC4L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14692-1", "protein_name": "Ribosome biogenesis protein BMS1 homolog", "gene_name": "BMS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6V7-1", "protein_name": "Probable ATP-dependent RNA helicase DDX49", "gene_name": "DDX49", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00566-1", "protein_name": "U3 small nucleolar ribonucleoprotein protein MPP10", "gene_name": "MPHOSPH10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H583-1", "protein_name": "HEAT repeat-containing protein 1", "gene_name": "HEATR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62753-1", "protein_name": "Small ribosomal subunit protein eS6", "gene_name": "RPS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75691-1", "protein_name": "Small subunit processome component 20 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"uniprot_canonical_ac": "Q15061-1", "protein_name": "WD repeat-containing protein 43", "gene_name": "WDR43", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NV31-1", "protein_name": "U3 small nucleolar ribonucleoprotein protein IMP3", "gene_name": "IMP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NV06-1", "protein_name": "DDB1- and CUL4-associated factor 13", "gene_name": "DCAF13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13601-1", "protein_name": "KRR1 small subunit processome component homolog", "gene_name": "KRR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62081-1", "protein_name": "Small ribosomal subunit protein eS7", "gene_name": "RPS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H6R4-1", "protein_name": "Nucleolar protein 6", "gene_name": "NOL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TED0-1", "protein_name": "U3 small nucleolar RNA-associated protein 15 homolog", "gene_name": "UTP15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UJK0-1", "protein_name": "18S rRNA aminocarboxypropyltransferase", "gene_name": "TSR3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15213-1", "protein_name": "WD repeat-containing protein 46", "gene_name": "WDR46", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NXG2-1", "protein_name": "THUMP domain-containing protein 1", "gene_name": "THUMPD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NI36-1", "protein_name": "WD repeat-containing protein 36", "gene_name": "WDR36", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNX4-1", "protein_name": "WD repeat-containing protein 3", "gene_name": "WDR3", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q96EU6", "url": "https://www.uniprot.org/uniprotkb/Q96EU6" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.23391857", "abstract": "", 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"n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The human WBSCR22 protein is involved in the biogenesis of the 40S ribosomal subunits in mammalian cells.", "journal": "PloS one", "date": "2013", "authors": "Ounap K, Kasper L, Kurg A, Kurg R", "reference": { "type": "PubMed", "id": "24086612", "url": "https://pubmed.ncbi.nlm.nih.gov/24086612" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q96EU6-1", "protein_name": "Ribosomal RNA processing protein 36 homolog", "gene_name": "RRP36", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3A4-1", "protein_name": "Ribosomal RNA-processing protein 7 homolog A", "gene_name": "RRP7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46781-1", "protein_name": "Small ribosomal subunit protein uS4", "gene_name": "RPS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12788-1", "protein_name": "Transducin beta-like protein 3", "gene_name": "TBL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UI30-1", "protein_name": "Multifunctional methyltransferase subunit TRM112-like protein", "gene_name": "TRMT112", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NX24-1", "protein_name": "H/ACA ribonucleoprotein complex subunit 2", "gene_name": "NHP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00567-1", "protein_name": "Nucleolar protein 56", "gene_name": "NOP56", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55769-1", "protein_name": "NHP2-like protein 1", "gene_name": "SNU13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPE3-1", "protein_name": "H/ACA ribonucleoprotein complex subunit 3", "gene_name": "NOP10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46087-1", "protein_name": "28S rRNA (cytosine(4447)-C(5))-methyltransferase", "gene_name": "NOP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3A2-1", "protein_name": "Probable U3 small nucleolar RNA-associated protein 11", "gene_name": "UTP11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NQZ2-1", "protein_name": "Something about silencing protein 10", "gene_name": "UTP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q68CQ4-1", "protein_name": "U3 small nucleolar RNA-associated protein 25 homolog", "gene_name": "UTP25", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IY37-1", "protein_name": "Probable ATP-dependent RNA helicase DHX37", "gene_name": "DHX37", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y324-1", "protein_name": "rRNA-processing protein FCF1 homolog", "gene_name": "FCF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92979-1", "protein_name": "Ribosomal RNA small subunit methyltransferase NEP1", "gene_name": "EMG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5TAP6-1", "protein_name": "U3 small nucleolar RNA-associated protein 14 homolog C", "gene_name": "UTP14C", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43709-1", "protein_name": "18S rRNA (guanine-N(7))-methyltransferase", "gene_name": "BUD23", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15269-1", "protein_name": "Periodic tryptophan protein 2 homolog", "gene_name": "PWP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0A0-1", "protein_name": "RNA cytidine acetyltransferase", "gene_name": "NAT10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NRX1-1", "protein_name": "RNA-binding protein PNO1", "gene_name": "PNO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNQ2-1", "protein_name": "Dimethyladenosine transferase", "gene_name": "DIMT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60832-1", "protein_name": "H/ACA ribonucleoprotein complex subunit DKC1", "gene_name": "DKC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22087-1", "protein_name": "rRNA 2'-O-methyltransferase fibrillarin", "gene_name": "FBL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0S4-1", "protein_name": "Probable ATP-dependent RNA helicase DDX47", "gene_name": "DDX47", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62263-1", "protein_name": "Small ribosomal subunit protein uS11", "gene_name": "RPS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2R4-1", "protein_name": "Probable ATP-dependent RNA helicase DDX52", "gene_name": "DDX52", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96G21-1", "protein_name": "U3 small nucleolar ribonucleoprotein protein IMP4", "gene_name": "IMP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NY12-1", "protein_name": "H/ACA ribonucleoprotein complex subunit 1", "gene_name": "GAR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15880-1", "protein_name": "Small ribosomal subunit protein uS5", "gene_name": "RPS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BVJ6-1", "protein_name": "U3 small nucleolar RNA-associated protein 14 homolog A", "gene_name": "UTP14A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5J1-1", "protein_name": "U3 small nucleolar RNA-associated protein 18 homolog", "gene_name": "UTP18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NYH9-1", "protein_name": "U3 small nucleolar RNA-associated protein 6 homolog", "gene_name": "UTP6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWA0-1", "protein_name": "WD repeat-containing protein 75", "gene_name": "WDR75", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BVI4-1", "protein_name": "Nucleolar complex protein 4 homolog", "gene_name": "NOC4L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14692-1", "protein_name": "Ribosome biogenesis protein BMS1 homolog", "gene_name": "BMS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6V7-1", "protein_name": "Probable ATP-dependent RNA helicase DDX49", "gene_name": "DDX49", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00566-1", "protein_name": "U3 small nucleolar ribonucleoprotein protein MPP10", "gene_name": "MPHOSPH10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H583-1", "protein_name": "HEAT repeat-containing protein 1", "gene_name": "HEATR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62753-1", "protein_name": "Small ribosomal subunit protein eS6", "gene_name": "RPS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75691-1", "protein_name": "Small subunit processome component 20 homolog", "gene_name": "UTP20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2P8-1", "protein_name": "RNA 3'-terminal phosphate cyclase-like protein", "gene_name": "RCL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14690-1", "protein_name": "Protein RRP5 homolog", "gene_name": "PDCD11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969X6-1", "protein_name": "U3 small nucleolar RNA-associated protein 4 homolog", "gene_name": "UTP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2X3-1", "protein_name": "Nucleolar protein 58", "gene_name": "NOP58", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H8H0-1", "protein_name": "Nucleolar protein 11", "gene_name": "NOL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78316-1", "protein_name": "Nucleolar protein 14", "gene_name": "NOP14", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43818-1", "protein_name": "U3 small nucleolar RNA-interacting protein 2", "gene_name": "RRP9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15061-1", "protein_name": "WD repeat-containing protein 43", "gene_name": "WDR43", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NV31-1", "protein_name": "U3 small nucleolar ribonucleoprotein protein IMP3", "gene_name": "IMP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NV06-1", "protein_name": "DDB1- and CUL4-associated factor 13", "gene_name": "DCAF13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13601-1", "protein_name": "KRR1 small subunit processome component homolog", "gene_name": "KRR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62081-1", "protein_name": "Small ribosomal subunit protein eS7", "gene_name": "RPS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H6R4-1", "protein_name": "Nucleolar protein 6", "gene_name": "NOL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TED0-1", "protein_name": "U3 small nucleolar RNA-associated protein 15 homolog", "gene_name": "UTP15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UJK0-1", "protein_name": "18S rRNA aminocarboxypropyltransferase", "gene_name": "TSR3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15213-1", "protein_name": "WD repeat-containing protein 46", "gene_name": "WDR46", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NXG2-1", "protein_name": "THUMP domain-containing protein 1", "gene_name": "THUMPD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NI36-1", "protein_name": "WD repeat-containing protein 36", "gene_name": "WDR36", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNX4-1", "protein_name": "WD repeat-containing protein 3", "gene_name": "WDR3", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q96EU6", "url": "https://www.uniprot.org/uniprotkb/Q96EU6" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.24086612", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], 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"n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Human NAT10 is an ATP-dependent RNA acetyltransferase responsible for N4-acetylcytidine formation in 18 S ribosomal RNA (rRNA).", "journal": "The Journal of biological chemistry", "date": "2014", "authors": "Ito S, Horikawa S, Suzuki T, Kawauchi H, Tanaka Y, Suzuki T, Suzuki T", "reference": { "type": "PubMed", "id": "25411247", 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"O00567-1", "protein_name": "Nucleolar protein 56", "gene_name": "NOP56", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55769-1", "protein_name": "NHP2-like protein 1", "gene_name": "SNU13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPE3-1", "protein_name": "H/ACA ribonucleoprotein complex subunit 3", "gene_name": "NOP10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46087-1", "protein_name": "28S rRNA (cytosine(4447)-C(5))-methyltransferase", "gene_name": "NOP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3A2-1", "protein_name": "Probable U3 small nucleolar RNA-associated protein 11", "gene_name": "UTP11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NQZ2-1", "protein_name": "Something about silencing protein 10", "gene_name": "UTP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q68CQ4-1", "protein_name": "U3 small nucleolar RNA-associated protein 25 homolog", "gene_name": "UTP25", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IY37-1", "protein_name": "Probable ATP-dependent RNA helicase DHX37", "gene_name": "DHX37", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y324-1", "protein_name": "rRNA-processing protein FCF1 homolog", "gene_name": "FCF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92979-1", "protein_name": "Ribosomal RNA small subunit methyltransferase NEP1", "gene_name": "EMG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5TAP6-1", "protein_name": "U3 small nucleolar RNA-associated protein 14 homolog C", "gene_name": "UTP14C", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43709-1", "protein_name": "18S rRNA (guanine-N(7))-methyltransferase", "gene_name": "BUD23", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15269-1", "protein_name": "Periodic tryptophan protein 2 homolog", "gene_name": "PWP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0A0-1", "protein_name": "RNA cytidine acetyltransferase", "gene_name": "NAT10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NRX1-1", "protein_name": "RNA-binding protein PNO1", "gene_name": "PNO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNQ2-1", "protein_name": "Dimethyladenosine transferase", "gene_name": "DIMT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60832-1", "protein_name": "H/ACA ribonucleoprotein complex subunit DKC1", "gene_name": "DKC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22087-1", "protein_name": "rRNA 2'-O-methyltransferase fibrillarin", "gene_name": "FBL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0S4-1", "protein_name": "Probable ATP-dependent RNA helicase DDX47", "gene_name": "DDX47", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62263-1", "protein_name": "Small ribosomal subunit protein uS11", "gene_name": "RPS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2R4-1", "protein_name": "Probable ATP-dependent RNA helicase DDX52", "gene_name": "DDX52", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96G21-1", "protein_name": "U3 small nucleolar ribonucleoprotein protein IMP4", "gene_name": "IMP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NY12-1", "protein_name": "H/ACA ribonucleoprotein complex subunit 1", "gene_name": "GAR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15880-1", "protein_name": "Small ribosomal subunit protein uS5", "gene_name": "RPS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BVJ6-1", "protein_name": "U3 small nucleolar RNA-associated protein 14 homolog A", "gene_name": "UTP14A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5J1-1", "protein_name": "U3 small nucleolar RNA-associated protein 18 homolog", "gene_name": "UTP18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NYH9-1", "protein_name": "U3 small nucleolar RNA-associated protein 6 homolog", "gene_name": "UTP6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWA0-1", "protein_name": "WD repeat-containing protein 75", "gene_name": "WDR75", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BVI4-1", "protein_name": "Nucleolar complex protein 4 homolog", "gene_name": "NOC4L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14692-1", "protein_name": "Ribosome biogenesis protein BMS1 homolog", "gene_name": "BMS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6V7-1", "protein_name": "Probable ATP-dependent RNA helicase DDX49", "gene_name": "DDX49", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00566-1", "protein_name": "U3 small nucleolar ribonucleoprotein protein MPP10", "gene_name": "MPHOSPH10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H583-1", "protein_name": "HEAT repeat-containing protein 1", "gene_name": "HEATR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62753-1", "protein_name": "Small ribosomal subunit protein eS6", "gene_name": "RPS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75691-1", "protein_name": "Small subunit processome component 20 homolog", "gene_name": "UTP20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2P8-1", "protein_name": "RNA 3'-terminal phosphate cyclase-like protein", "gene_name": "RCL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14690-1", "protein_name": "Protein RRP5 homolog", "gene_name": "PDCD11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969X6-1", "protein_name": "U3 small nucleolar RNA-associated protein 4 homolog", "gene_name": "UTP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2X3-1", "protein_name": "Nucleolar protein 58", "gene_name": "NOP58", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H8H0-1", "protein_name": "Nucleolar protein 11", "gene_name": "NOL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78316-1", "protein_name": "Nucleolar protein 14", "gene_name": "NOP14", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43818-1", "protein_name": "U3 small nucleolar RNA-interacting protein 2", "gene_name": "RRP9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15061-1", "protein_name": "WD repeat-containing protein 43", "gene_name": "WDR43", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NV31-1", "protein_name": "U3 small nucleolar ribonucleoprotein protein IMP3", "gene_name": "IMP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NV06-1", "protein_name": "DDB1- and CUL4-associated factor 13", "gene_name": "DCAF13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13601-1", "protein_name": "KRR1 small subunit processome component homolog", "gene_name": "KRR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62081-1", "protein_name": "Small ribosomal subunit protein eS7", "gene_name": "RPS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H6R4-1", "protein_name": "Nucleolar protein 6", "gene_name": "NOL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TED0-1", "protein_name": "U3 small nucleolar RNA-associated protein 15 homolog", "gene_name": "UTP15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UJK0-1", "protein_name": "18S rRNA aminocarboxypropyltransferase", "gene_name": "TSR3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15213-1", "protein_name": "WD repeat-containing protein 46", "gene_name": "WDR46", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NXG2-1", "protein_name": "THUMP domain-containing protein 1", "gene_name": "THUMPD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NI36-1", "protein_name": "WD repeat-containing protein 36", "gene_name": "WDR36", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNX4-1", "protein_name": "WD repeat-containing protein 3", "gene_name": "WDR3", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q96EU6", "url": "https://www.uniprot.org/uniprotkb/Q96EU6" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.25411247", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 60 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": 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"n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Yeast Kre33 and human NAT10 are conserved 18S rRNA cytosine acetyltransferases that modify tRNAs assisted by the adaptor Tan1/THUMPD1.", "journal": "Nucleic acids research", "date": "2015", "authors": "Sharma S, Langhendries JL, Watzinger P, Kotter P, Entian KD, Lafontaine DL", "reference": { "type": "PubMed", "id": "25653167", 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"O00567-1", "protein_name": "Nucleolar protein 56", "gene_name": "NOP56", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55769-1", "protein_name": "NHP2-like protein 1", "gene_name": "SNU13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPE3-1", "protein_name": "H/ACA ribonucleoprotein complex subunit 3", "gene_name": "NOP10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46087-1", "protein_name": "28S rRNA (cytosine(4447)-C(5))-methyltransferase", "gene_name": "NOP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3A2-1", "protein_name": "Probable U3 small nucleolar RNA-associated protein 11", "gene_name": "UTP11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NQZ2-1", "protein_name": "Something about silencing protein 10", "gene_name": "UTP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q68CQ4-1", "protein_name": "U3 small nucleolar RNA-associated protein 25 homolog", "gene_name": "UTP25", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IY37-1", "protein_name": "Probable ATP-dependent RNA helicase DHX37", "gene_name": "DHX37", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y324-1", "protein_name": "rRNA-processing protein FCF1 homolog", "gene_name": "FCF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92979-1", "protein_name": "Ribosomal RNA small subunit methyltransferase NEP1", "gene_name": "EMG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5TAP6-1", "protein_name": "U3 small nucleolar RNA-associated protein 14 homolog C", "gene_name": "UTP14C", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43709-1", "protein_name": "18S rRNA (guanine-N(7))-methyltransferase", "gene_name": "BUD23", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15269-1", "protein_name": "Periodic tryptophan protein 2 homolog", "gene_name": "PWP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0A0-1", "protein_name": "RNA cytidine acetyltransferase", "gene_name": "NAT10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NRX1-1", "protein_name": "RNA-binding protein PNO1", "gene_name": "PNO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNQ2-1", "protein_name": "Dimethyladenosine transferase", "gene_name": "DIMT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60832-1", "protein_name": "H/ACA ribonucleoprotein complex subunit DKC1", "gene_name": "DKC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22087-1", "protein_name": "rRNA 2'-O-methyltransferase fibrillarin", "gene_name": "FBL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0S4-1", "protein_name": "Probable ATP-dependent RNA helicase DDX47", "gene_name": "DDX47", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62263-1", "protein_name": "Small ribosomal subunit protein uS11", "gene_name": "RPS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2R4-1", "protein_name": "Probable ATP-dependent RNA helicase DDX52", "gene_name": "DDX52", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96G21-1", "protein_name": "U3 small nucleolar ribonucleoprotein protein IMP4", "gene_name": "IMP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NY12-1", "protein_name": "H/ACA ribonucleoprotein complex subunit 1", "gene_name": "GAR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15880-1", "protein_name": "Small ribosomal subunit protein uS5", "gene_name": "RPS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BVJ6-1", "protein_name": "U3 small nucleolar RNA-associated protein 14 homolog A", "gene_name": "UTP14A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5J1-1", "protein_name": "U3 small nucleolar RNA-associated protein 18 homolog", "gene_name": "UTP18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NYH9-1", "protein_name": "U3 small nucleolar RNA-associated protein 6 homolog", "gene_name": "UTP6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWA0-1", "protein_name": "WD repeat-containing protein 75", "gene_name": "WDR75", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BVI4-1", "protein_name": "Nucleolar complex protein 4 homolog", "gene_name": "NOC4L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14692-1", "protein_name": "Ribosome biogenesis protein BMS1 homolog", "gene_name": "BMS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6V7-1", "protein_name": "Probable ATP-dependent RNA helicase DDX49", "gene_name": "DDX49", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00566-1", "protein_name": "U3 small nucleolar ribonucleoprotein protein MPP10", "gene_name": "MPHOSPH10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H583-1", "protein_name": "HEAT repeat-containing protein 1", "gene_name": "HEATR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62753-1", "protein_name": "Small ribosomal subunit protein eS6", "gene_name": "RPS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75691-1", "protein_name": "Small subunit processome component 20 homolog", "gene_name": "UTP20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2P8-1", "protein_name": "RNA 3'-terminal phosphate cyclase-like protein", "gene_name": "RCL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14690-1", "protein_name": "Protein RRP5 homolog", "gene_name": "PDCD11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969X6-1", "protein_name": "U3 small nucleolar RNA-associated protein 4 homolog", "gene_name": "UTP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2X3-1", "protein_name": "Nucleolar protein 58", "gene_name": "NOP58", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H8H0-1", "protein_name": "Nucleolar protein 11", "gene_name": "NOL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78316-1", "protein_name": "Nucleolar protein 14", "gene_name": "NOP14", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43818-1", "protein_name": "U3 small nucleolar RNA-interacting protein 2", "gene_name": "RRP9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15061-1", "protein_name": "WD repeat-containing protein 43", "gene_name": "WDR43", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NV31-1", "protein_name": "U3 small nucleolar ribonucleoprotein protein IMP3", "gene_name": "IMP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NV06-1", "protein_name": "DDB1- and CUL4-associated factor 13", "gene_name": "DCAF13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13601-1", "protein_name": "KRR1 small subunit processome component homolog", "gene_name": "KRR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62081-1", "protein_name": "Small ribosomal subunit protein eS7", "gene_name": "RPS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H6R4-1", "protein_name": "Nucleolar protein 6", "gene_name": "NOL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53914-1", "protein_name": "RNA cytidine acetyltransferase", "gene_name": "KRE33", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q8TED0-1", "protein_name": "U3 small nucleolar RNA-associated protein 15 homolog", "gene_name": "UTP15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UJK0-1", "protein_name": "18S rRNA aminocarboxypropyltransferase", "gene_name": "TSR3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15213-1", "protein_name": "WD repeat-containing protein 46", "gene_name": "WDR46", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NXG2-1", "protein_name": "THUMP domain-containing protein 1", "gene_name": "THUMPD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NI36-1", "protein_name": "WD repeat-containing protein 36", "gene_name": "WDR36", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNX4-1", "protein_name": "WD repeat-containing protein 3", "gene_name": "WDR3", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q96EU6", "url": "https://www.uniprot.org/uniprotkb/Q96EU6" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "mutagenesis": [ { "start_pos": 289, "end_pos": 289, "sequence_org": "K", "sequence_mut": "A", "comment": "Reduces 18S rRNA acetylation by 80% and tRNA acetylation by 47%.", "evidence": [ { "database": "UniProtKB", "id": "P53914", "url": "https://www.uniprot.org/uniprotkb/P53914" }, { "database": "PubMed", "id": "25653167", "url": "https://pubmed.ncbi.nlm.nih.gov/25653167" } ], "uniprot_canonical_ac": "P53914-1" }, { "start_pos": 545, "end_pos": 545, "sequence_org": "H", "sequence_mut": "A", "comment": "Total loss of 18S rRNA acetylation and tRNA acetylation.", "evidence": [ { "database": "UniProtKB", "id": "P53914", "url": "https://www.uniprot.org/uniprotkb/P53914" }, { "database": "PubMed", "id": "25653167", "url": "https://pubmed.ncbi.nlm.nih.gov/25653167" } ], "uniprot_canonical_ac": "P53914-1" }, { "start_pos": 637, "end_pos": 637, "sequence_org": "R", "sequence_mut": "A", "comment": "Total loss of 18S rRNA acetylation and tRNA acetylation.", "evidence": [ { "database": "UniProtKB", "id": "P53914", "url": "https://www.uniprot.org/uniprotkb/P53914" }, { "database": "PubMed", "id": "25653167", "url": "https://pubmed.ncbi.nlm.nih.gov/25653167" } ], "uniprot_canonical_ac": "P53914-1" } ], "record_id": "pubmed.25653167", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 61 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The human 18S rRNA base methyltransferases DIMT1L and WBSCR22-TRMT112 but not rRNA modification are required for ribosome biogenesis.", "journal": "Molecular biology of the cell", "date": "2015", "authors": "Zorbas C, Nicolas E, Wacheul L, Huvelle E, Heurgue-Hamard V, Lafontaine DL", "reference": { "type": "PubMed", "id": "25851604", "url": "https://pubmed.ncbi.nlm.nih.gov/25851604" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q96EU6-1", "protein_name": "Ribosomal RNA processing protein 36 homolog", "gene_name": "RRP36", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3A4-1", "protein_name": "Ribosomal RNA-processing protein 7 homolog A", "gene_name": "RRP7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46781-1", "protein_name": "Small ribosomal subunit protein uS4", "gene_name": "RPS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12788-1", "protein_name": "Transducin beta-like protein 3", "gene_name": "TBL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UI30-1", "protein_name": "Multifunctional methyltransferase subunit TRM112-like protein", "gene_name": "TRMT112", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NX24-1", "protein_name": "H/ACA ribonucleoprotein complex subunit 2", "gene_name": "NHP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00567-1", "protein_name": "Nucleolar protein 56", "gene_name": "NOP56", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55769-1", "protein_name": "NHP2-like protein 1", "gene_name": "SNU13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPE3-1", "protein_name": "H/ACA ribonucleoprotein complex subunit 3", "gene_name": "NOP10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46087-1", "protein_name": "28S rRNA (cytosine(4447)-C(5))-methyltransferase", "gene_name": "NOP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3A2-1", "protein_name": "Probable U3 small nucleolar RNA-associated protein 11", "gene_name": "UTP11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NQZ2-1", "protein_name": "Something about silencing protein 10", "gene_name": "UTP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q68CQ4-1", "protein_name": "U3 small nucleolar RNA-associated protein 25 homolog", "gene_name": "UTP25", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IY37-1", "protein_name": "Probable ATP-dependent RNA helicase DHX37", "gene_name": "DHX37", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y324-1", "protein_name": "rRNA-processing protein FCF1 homolog", "gene_name": "FCF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92979-1", "protein_name": "Ribosomal RNA small subunit methyltransferase NEP1", "gene_name": "EMG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5TAP6-1", "protein_name": "U3 small nucleolar RNA-associated protein 14 homolog C", "gene_name": "UTP14C", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43709-1", "protein_name": "18S rRNA (guanine-N(7))-methyltransferase", "gene_name": "BUD23", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15269-1", "protein_name": "Periodic tryptophan protein 2 homolog", "gene_name": "PWP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0A0-1", "protein_name": "RNA cytidine acetyltransferase", "gene_name": "NAT10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NRX1-1", "protein_name": "RNA-binding protein PNO1", "gene_name": "PNO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNQ2-1", "protein_name": "Dimethyladenosine transferase", "gene_name": "DIMT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60832-1", "protein_name": "H/ACA ribonucleoprotein complex subunit DKC1", "gene_name": "DKC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22087-1", "protein_name": "rRNA 2'-O-methyltransferase fibrillarin", "gene_name": "FBL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0S4-1", "protein_name": "Probable ATP-dependent RNA helicase DDX47", "gene_name": "DDX47", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62263-1", "protein_name": "Small ribosomal subunit protein uS11", "gene_name": "RPS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2R4-1", "protein_name": "Probable ATP-dependent RNA helicase DDX52", "gene_name": "DDX52", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96G21-1", "protein_name": "U3 small nucleolar ribonucleoprotein protein IMP4", "gene_name": "IMP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NY12-1", "protein_name": "H/ACA ribonucleoprotein complex subunit 1", "gene_name": "GAR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15880-1", "protein_name": "Small ribosomal subunit protein uS5", "gene_name": "RPS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BVJ6-1", "protein_name": "U3 small nucleolar RNA-associated protein 14 homolog A", "gene_name": "UTP14A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5J1-1", "protein_name": "U3 small nucleolar RNA-associated protein 18 homolog", "gene_name": "UTP18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NYH9-1", "protein_name": "U3 small nucleolar RNA-associated protein 6 homolog", "gene_name": "UTP6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWA0-1", "protein_name": "WD repeat-containing protein 75", "gene_name": "WDR75", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BVI4-1", "protein_name": "Nucleolar complex protein 4 homolog", "gene_name": "NOC4L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14692-1", "protein_name": "Ribosome biogenesis protein BMS1 homolog", "gene_name": "BMS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6V7-1", "protein_name": "Probable ATP-dependent RNA helicase DDX49", "gene_name": "DDX49", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00566-1", "protein_name": "U3 small nucleolar ribonucleoprotein protein MPP10", "gene_name": "MPHOSPH10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H583-1", "protein_name": "HEAT repeat-containing protein 1", "gene_name": "HEATR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62753-1", "protein_name": "Small ribosomal subunit protein eS6", "gene_name": "RPS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75691-1", "protein_name": "Small subunit processome component 20 homolog", "gene_name": "UTP20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2P8-1", "protein_name": "RNA 3'-terminal phosphate cyclase-like protein", "gene_name": "RCL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14690-1", "protein_name": "Protein RRP5 homolog", "gene_name": "PDCD11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969X6-1", "protein_name": "U3 small nucleolar RNA-associated protein 4 homolog", "gene_name": "UTP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2X3-1", "protein_name": "Nucleolar protein 58", "gene_name": "NOP58", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H8H0-1", "protein_name": "Nucleolar protein 11", "gene_name": "NOL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78316-1", "protein_name": "Nucleolar protein 14", "gene_name": "NOP14", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43818-1", "protein_name": "U3 small nucleolar RNA-interacting protein 2", "gene_name": "RRP9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15061-1", "protein_name": "WD repeat-containing protein 43", "gene_name": "WDR43", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NV31-1", "protein_name": "U3 small nucleolar ribonucleoprotein protein IMP3", "gene_name": "IMP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NV06-1", "protein_name": "DDB1- and CUL4-associated factor 13", "gene_name": "DCAF13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5N5-1", "protein_name": "Methyltransferase HEMK2", "gene_name": "HEMK2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13601-1", "protein_name": "KRR1 small subunit processome component homolog", "gene_name": "KRR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62081-1", "protein_name": "Small ribosomal subunit protein eS7", "gene_name": "RPS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H6R4-1", "protein_name": "Nucleolar protein 6", "gene_name": "NOL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TED0-1", "protein_name": "U3 small nucleolar RNA-associated protein 15 homolog", "gene_name": "UTP15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UJK0-1", "protein_name": "18S rRNA aminocarboxypropyltransferase", "gene_name": "TSR3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15213-1", "protein_name": "WD repeat-containing protein 46", "gene_name": "WDR46", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NXG2-1", "protein_name": "THUMP domain-containing protein 1", "gene_name": "THUMPD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NI36-1", "protein_name": "WD repeat-containing protein 36", "gene_name": "WDR36", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNX4-1", "protein_name": "WD repeat-containing protein 3", "gene_name": "WDR3", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q96EU6", "url": "https://www.uniprot.org/uniprotkb/Q96EU6" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.25851604", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 61 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Modified Method of rRNA Structure Analysis Reveals Novel Characteristics of Box C/D RNA Analogues.", "journal": "Acta naturae", "date": "2015", "authors": "Filippova JA, Stepanov GA, Semenov DV, Koval OA, Kuligina EV, Rabinov IV, Richter VA", "reference": { "type": "PubMed", "id": "26085946", "url": "https://pubmed.ncbi.nlm.nih.gov/26085946" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q96EU6-1", "protein_name": "Ribosomal RNA processing protein 36 homolog", "gene_name": "RRP36", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3A4-1", "protein_name": "Ribosomal RNA-processing protein 7 homolog A", "gene_name": "RRP7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46781-1", "protein_name": "Small ribosomal subunit protein uS4", "gene_name": "RPS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12788-1", "protein_name": "Transducin beta-like protein 3", "gene_name": "TBL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UI30-1", "protein_name": "Multifunctional methyltransferase subunit TRM112-like protein", "gene_name": "TRMT112", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NX24-1", "protein_name": "H/ACA ribonucleoprotein complex subunit 2", "gene_name": "NHP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00567-1", "protein_name": "Nucleolar protein 56", "gene_name": "NOP56", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55769-1", "protein_name": "NHP2-like protein 1", "gene_name": "SNU13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPE3-1", "protein_name": "H/ACA ribonucleoprotein complex subunit 3", "gene_name": "NOP10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46087-1", "protein_name": "28S rRNA (cytosine(4447)-C(5))-methyltransferase", "gene_name": "NOP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3A2-1", "protein_name": "Probable U3 small nucleolar RNA-associated protein 11", "gene_name": "UTP11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NQZ2-1", "protein_name": "Something about silencing protein 10", "gene_name": "UTP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q68CQ4-1", "protein_name": "U3 small nucleolar RNA-associated protein 25 homolog", "gene_name": "UTP25", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IY37-1", "protein_name": "Probable ATP-dependent RNA helicase DHX37", "gene_name": "DHX37", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y324-1", "protein_name": "rRNA-processing protein FCF1 homolog", "gene_name": "FCF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92979-1", "protein_name": "Ribosomal RNA small subunit methyltransferase NEP1", "gene_name": "EMG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5TAP6-1", "protein_name": "U3 small nucleolar RNA-associated protein 14 homolog C", "gene_name": "UTP14C", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43709-1", "protein_name": "18S rRNA (guanine-N(7))-methyltransferase", "gene_name": "BUD23", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15269-1", "protein_name": "Periodic tryptophan protein 2 homolog", "gene_name": "PWP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0A0-1", "protein_name": "RNA cytidine acetyltransferase", "gene_name": "NAT10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NRX1-1", "protein_name": "RNA-binding protein PNO1", "gene_name": "PNO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNQ2-1", "protein_name": "Dimethyladenosine transferase", "gene_name": "DIMT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60832-1", "protein_name": "H/ACA ribonucleoprotein complex subunit DKC1", "gene_name": "DKC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22087-1", "protein_name": "rRNA 2'-O-methyltransferase fibrillarin", "gene_name": "FBL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0S4-1", "protein_name": "Probable ATP-dependent RNA helicase DDX47", "gene_name": "DDX47", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62263-1", "protein_name": "Small ribosomal subunit protein uS11", "gene_name": "RPS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2R4-1", "protein_name": "Probable ATP-dependent RNA helicase DDX52", "gene_name": "DDX52", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96G21-1", "protein_name": "U3 small nucleolar ribonucleoprotein protein IMP4", "gene_name": "IMP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NY12-1", "protein_name": "H/ACA ribonucleoprotein complex subunit 1", "gene_name": "GAR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15880-1", "protein_name": "Small ribosomal subunit protein uS5", "gene_name": "RPS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BVJ6-1", "protein_name": "U3 small nucleolar RNA-associated protein 14 homolog A", "gene_name": "UTP14A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5J1-1", "protein_name": "U3 small nucleolar RNA-associated protein 18 homolog", "gene_name": "UTP18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NYH9-1", "protein_name": "U3 small nucleolar RNA-associated protein 6 homolog", "gene_name": "UTP6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWA0-1", "protein_name": "WD repeat-containing protein 75", "gene_name": "WDR75", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BVI4-1", "protein_name": "Nucleolar complex protein 4 homolog", "gene_name": "NOC4L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14692-1", "protein_name": "Ribosome biogenesis protein BMS1 homolog", "gene_name": "BMS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6V7-1", "protein_name": "Probable ATP-dependent RNA helicase DDX49", "gene_name": "DDX49", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00566-1", "protein_name": "U3 small nucleolar ribonucleoprotein protein MPP10", "gene_name": "MPHOSPH10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H583-1", "protein_name": "HEAT repeat-containing protein 1", "gene_name": "HEATR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62753-1", "protein_name": "Small ribosomal subunit protein eS6", "gene_name": "RPS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75691-1", "protein_name": "Small subunit processome component 20 homolog", "gene_name": "UTP20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2P8-1", "protein_name": "RNA 3'-terminal phosphate cyclase-like protein", "gene_name": "RCL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14690-1", "protein_name": "Protein RRP5 homolog", "gene_name": "PDCD11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969X6-1", "protein_name": "U3 small nucleolar RNA-associated protein 4 homolog", "gene_name": "UTP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2X3-1", "protein_name": "Nucleolar protein 58", "gene_name": "NOP58", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H8H0-1", "protein_name": "Nucleolar protein 11", "gene_name": "NOL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78316-1", "protein_name": "Nucleolar protein 14", "gene_name": "NOP14", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43818-1", "protein_name": "U3 small nucleolar RNA-interacting protein 2", "gene_name": "RRP9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15061-1", "protein_name": "WD repeat-containing protein 43", "gene_name": "WDR43", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NV31-1", "protein_name": "U3 small nucleolar ribonucleoprotein protein IMP3", "gene_name": "IMP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NV06-1", "protein_name": "DDB1- and CUL4-associated factor 13", "gene_name": "DCAF13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13601-1", "protein_name": "KRR1 small subunit processome component homolog", "gene_name": "KRR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62081-1", "protein_name": "Small ribosomal subunit protein eS7", "gene_name": "RPS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H6R4-1", "protein_name": "Nucleolar protein 6", "gene_name": "NOL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TED0-1", "protein_name": "U3 small nucleolar RNA-associated protein 15 homolog", "gene_name": "UTP15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UJK0-1", "protein_name": "18S rRNA aminocarboxypropyltransferase", "gene_name": "TSR3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15213-1", "protein_name": "WD repeat-containing protein 46", "gene_name": "WDR46", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NXG2-1", "protein_name": "THUMP domain-containing protein 1", "gene_name": "THUMPD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NI36-1", "protein_name": "WD repeat-containing protein 36", "gene_name": "WDR36", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNX4-1", "protein_name": "WD repeat-containing protein 3", "gene_name": "WDR3", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q96EU6", "url": "https://www.uniprot.org/uniprotkb/Q96EU6" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.26085946", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 60 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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"count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Eukaryotic rRNA Modification by Yeast 5-Methylcytosine-Methyltransferases and Human Proliferation-Associated Antigen p120.", "journal": "PloS one", "date": "2015", "authors": "Bourgeois G, Ney M, Gaspar I, Aigueperse C, Schaefer M, Kellner S, Helm M, Motorin Y", "reference": { "type": "PubMed", "id": "26196125", "url": "https://pubmed.ncbi.nlm.nih.gov/26196125" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q96EU6-1", "protein_name": "Ribosomal RNA processing protein 36 homolog", "gene_name": "RRP36", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3A4-1", "protein_name": "Ribosomal RNA-processing protein 7 homolog A", "gene_name": "RRP7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46781-1", "protein_name": "Small ribosomal subunit protein uS4", "gene_name": "RPS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12788-1", "protein_name": "Transducin beta-like protein 3", "gene_name": "TBL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UI30-1", "protein_name": "Multifunctional methyltransferase subunit TRM112-like protein", "gene_name": "TRMT112", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NX24-1", "protein_name": "H/ACA ribonucleoprotein complex subunit 2", "gene_name": "NHP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00567-1", "protein_name": "Nucleolar protein 56", "gene_name": "NOP56", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55769-1", "protein_name": "NHP2-like protein 1", "gene_name": "SNU13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPE3-1", "protein_name": "H/ACA ribonucleoprotein complex subunit 3", "gene_name": "NOP10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46087-1", "protein_name": "28S rRNA (cytosine(4447)-C(5))-methyltransferase", "gene_name": "NOP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3A2-1", "protein_name": "Probable U3 small nucleolar RNA-associated protein 11", "gene_name": "UTP11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NQZ2-1", "protein_name": "Something about silencing protein 10", "gene_name": "UTP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q68CQ4-1", "protein_name": "U3 small nucleolar RNA-associated protein 25 homolog", "gene_name": "UTP25", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IY37-1", "protein_name": "Probable ATP-dependent RNA helicase DHX37", "gene_name": "DHX37", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y324-1", "protein_name": "rRNA-processing protein FCF1 homolog", "gene_name": "FCF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92979-1", "protein_name": "Ribosomal RNA small subunit methyltransferase NEP1", "gene_name": "EMG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5TAP6-1", "protein_name": "U3 small nucleolar RNA-associated protein 14 homolog C", "gene_name": "UTP14C", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43709-1", "protein_name": "18S rRNA (guanine-N(7))-methyltransferase", "gene_name": "BUD23", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15269-1", "protein_name": "Periodic tryptophan protein 2 homolog", "gene_name": "PWP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0A0-1", "protein_name": "RNA cytidine acetyltransferase", "gene_name": "NAT10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NRX1-1", "protein_name": "RNA-binding protein PNO1", "gene_name": "PNO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNQ2-1", "protein_name": "Dimethyladenosine transferase", "gene_name": "DIMT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60832-1", "protein_name": "H/ACA ribonucleoprotein complex subunit DKC1", "gene_name": "DKC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22087-1", "protein_name": "rRNA 2'-O-methyltransferase fibrillarin", "gene_name": "FBL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0S4-1", "protein_name": "Probable ATP-dependent RNA helicase DDX47", "gene_name": "DDX47", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62263-1", "protein_name": "Small ribosomal subunit protein uS11", "gene_name": "RPS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2R4-1", "protein_name": "Probable ATP-dependent RNA helicase DDX52", "gene_name": "DDX52", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96G21-1", "protein_name": "U3 small nucleolar ribonucleoprotein protein IMP4", "gene_name": "IMP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NY12-1", "protein_name": "H/ACA ribonucleoprotein complex subunit 1", "gene_name": "GAR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15880-1", "protein_name": "Small ribosomal subunit protein uS5", "gene_name": "RPS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BVJ6-1", "protein_name": "U3 small nucleolar RNA-associated protein 14 homolog A", "gene_name": "UTP14A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5J1-1", "protein_name": "U3 small nucleolar RNA-associated protein 18 homolog", "gene_name": "UTP18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NYH9-1", "protein_name": "U3 small nucleolar RNA-associated protein 6 homolog", "gene_name": "UTP6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWA0-1", "protein_name": "WD repeat-containing protein 75", "gene_name": "WDR75", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BVI4-1", "protein_name": "Nucleolar complex protein 4 homolog", "gene_name": "NOC4L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14692-1", "protein_name": "Ribosome biogenesis protein BMS1 homolog", "gene_name": "BMS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6V7-1", "protein_name": "Probable ATP-dependent RNA helicase DDX49", "gene_name": "DDX49", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00566-1", "protein_name": "U3 small nucleolar ribonucleoprotein protein MPP10", "gene_name": "MPHOSPH10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H583-1", "protein_name": "HEAT repeat-containing protein 1", "gene_name": "HEATR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62753-1", "protein_name": "Small ribosomal subunit protein eS6", "gene_name": "RPS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75691-1", "protein_name": "Small subunit processome component 20 homolog", "gene_name": "UTP20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2P8-1", "protein_name": "RNA 3'-terminal phosphate cyclase-like protein", "gene_name": "RCL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14690-1", "protein_name": "Protein RRP5 homolog", "gene_name": "PDCD11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969X6-1", "protein_name": "U3 small nucleolar RNA-associated protein 4 homolog", "gene_name": "UTP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2X3-1", "protein_name": "Nucleolar protein 58", "gene_name": "NOP58", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H8H0-1", "protein_name": "Nucleolar protein 11", "gene_name": "NOL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78316-1", "protein_name": "Nucleolar protein 14", "gene_name": "NOP14", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43818-1", "protein_name": "U3 small nucleolar RNA-interacting protein 2", "gene_name": "RRP9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15061-1", "protein_name": "WD repeat-containing protein 43", "gene_name": "WDR43", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NV31-1", "protein_name": "U3 small nucleolar ribonucleoprotein protein IMP3", "gene_name": "IMP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NV06-1", "protein_name": "DDB1- and CUL4-associated factor 13", "gene_name": "DCAF13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13601-1", "protein_name": "KRR1 small subunit processome component homolog", "gene_name": "KRR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62081-1", "protein_name": "Small ribosomal subunit protein eS7", "gene_name": "RPS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H6R4-1", "protein_name": "Nucleolar protein 6", "gene_name": "NOL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TED0-1", "protein_name": "U3 small nucleolar RNA-associated protein 15 homolog", "gene_name": "UTP15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UJK0-1", "protein_name": "18S rRNA aminocarboxypropyltransferase", "gene_name": "TSR3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15213-1", "protein_name": "WD repeat-containing protein 46", "gene_name": "WDR46", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NXG2-1", "protein_name": "THUMP domain-containing protein 1", "gene_name": "THUMPD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NI36-1", "protein_name": "WD repeat-containing protein 36", "gene_name": "WDR36", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNX4-1", "protein_name": "WD repeat-containing protein 3", "gene_name": "WDR3", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q96EU6", "url": "https://www.uniprot.org/uniprotkb/Q96EU6" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.26196125", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 60 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Ribosome biogenesis factor Tsr3 is the aminocarboxypropyl transferase responsible for 18S rRNA hypermodification in yeast and humans.", "journal": "Nucleic acids research", "date": "2016", "authors": "Meyer B, Wurm JP, Sharma S, Immer C, Pogoryelov D, Kotter P, Lafontaine DL, Wohnert J, Entian KD", "reference": { "type": "PubMed", "id": "27084949", "url": "https://pubmed.ncbi.nlm.nih.gov/27084949" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q96EU6-1", "protein_name": "Ribosomal RNA processing protein 36 homolog", "gene_name": "RRP36", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3A4-1", "protein_name": "Ribosomal RNA-processing protein 7 homolog A", "gene_name": "RRP7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46781-1", "protein_name": "Small ribosomal subunit protein uS4", "gene_name": "RPS9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12788-1", "protein_name": "Transducin beta-like protein 3", "gene_name": "TBL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UI30-1", "protein_name": "Multifunctional methyltransferase subunit TRM112-like protein", "gene_name": "TRMT112", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NX24-1", "protein_name": "H/ACA ribonucleoprotein complex subunit 2", "gene_name": "NHP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00567-1", "protein_name": "Nucleolar protein 56", "gene_name": "NOP56", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55769-1", "protein_name": "NHP2-like protein 1", "gene_name": "SNU13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPE3-1", "protein_name": "H/ACA ribonucleoprotein complex subunit 3", "gene_name": "NOP10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46087-1", "protein_name": "28S rRNA (cytosine(4447)-C(5))-methyltransferase", "gene_name": "NOP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3A2-1", "protein_name": "Probable U3 small nucleolar RNA-associated protein 11", "gene_name": "UTP11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NQZ2-1", "protein_name": "Something about silencing protein 10", "gene_name": "UTP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q68CQ4-1", "protein_name": "U3 small nucleolar RNA-associated protein 25 homolog", "gene_name": "UTP25", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IY37-1", "protein_name": "Probable ATP-dependent RNA helicase DHX37", "gene_name": "DHX37", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y324-1", "protein_name": "rRNA-processing protein FCF1 homolog", "gene_name": "FCF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92979-1", "protein_name": "Ribosomal RNA small subunit methyltransferase NEP1", "gene_name": "EMG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5TAP6-1", "protein_name": "U3 small nucleolar RNA-associated protein 14 homolog C", "gene_name": "UTP14C", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43709-1", "protein_name": "18S rRNA (guanine-N(7))-methyltransferase", "gene_name": "BUD23", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15269-1", "protein_name": "Periodic tryptophan protein 2 homolog", "gene_name": "PWP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q12094-1", "protein_name": "18S rRNA aminocarboxypropyltransferase", "gene_name": "TSR3", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q9H0A0-1", "protein_name": "RNA cytidine acetyltransferase", "gene_name": "NAT10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NRX1-1", "protein_name": "RNA-binding protein PNO1", "gene_name": "PNO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNQ2-1", "protein_name": "Dimethyladenosine transferase", "gene_name": "DIMT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60832-1", "protein_name": "H/ACA ribonucleoprotein complex subunit DKC1", "gene_name": "DKC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22087-1", "protein_name": "rRNA 2'-O-methyltransferase fibrillarin", "gene_name": "FBL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0S4-1", "protein_name": "Probable ATP-dependent RNA helicase DDX47", "gene_name": "DDX47", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62263-1", "protein_name": "Small ribosomal subunit protein uS11", "gene_name": "RPS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2R4-1", "protein_name": "Probable ATP-dependent RNA helicase DDX52", "gene_name": "DDX52", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96G21-1", "protein_name": "U3 small nucleolar ribonucleoprotein protein IMP4", "gene_name": "IMP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NY12-1", "protein_name": "H/ACA ribonucleoprotein complex subunit 1", "gene_name": "GAR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15880-1", "protein_name": "Small ribosomal subunit protein uS5", "gene_name": "RPS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BVJ6-1", "protein_name": "U3 small nucleolar RNA-associated protein 14 homolog A", "gene_name": "UTP14A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5J1-1", "protein_name": "U3 small nucleolar RNA-associated protein 18 homolog", "gene_name": "UTP18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NYH9-1", "protein_name": "U3 small nucleolar RNA-associated protein 6 homolog", "gene_name": "UTP6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWA0-1", "protein_name": "WD repeat-containing protein 75", "gene_name": "WDR75", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BVI4-1", "protein_name": "Nucleolar complex protein 4 homolog", "gene_name": "NOC4L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14692-1", "protein_name": "Ribosome biogenesis protein BMS1 homolog", "gene_name": "BMS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6V7-1", "protein_name": "Probable ATP-dependent RNA helicase 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"O00567-1", "protein_name": "Nucleolar protein 56", "gene_name": "NOP56", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55769-1", "protein_name": "NHP2-like protein 1", "gene_name": "SNU13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPE3-1", "protein_name": "H/ACA ribonucleoprotein complex subunit 3", "gene_name": "NOP10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46087-1", "protein_name": "28S rRNA (cytosine(4447)-C(5))-methyltransferase", "gene_name": "NOP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3A2-1", "protein_name": "Probable U3 small nucleolar RNA-associated protein 11", "gene_name": "UTP11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NQZ2-1", "protein_name": "Something about silencing protein 10", "gene_name": "UTP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q68CQ4-1", "protein_name": "U3 small nucleolar RNA-associated protein 25 homolog", "gene_name": "UTP25", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IY37-1", "protein_name": "Probable ATP-dependent RNA helicase DHX37", "gene_name": "DHX37", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y324-1", "protein_name": "rRNA-processing protein FCF1 homolog", "gene_name": "FCF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92979-1", "protein_name": "Ribosomal RNA small subunit methyltransferase NEP1", "gene_name": "EMG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5TAP6-1", "protein_name": "U3 small nucleolar RNA-associated protein 14 homolog C", "gene_name": "UTP14C", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43709-1", "protein_name": "18S rRNA (guanine-N(7))-methyltransferase", "gene_name": "BUD23", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15269-1", "protein_name": "Periodic tryptophan protein 2 homolog", "gene_name": "PWP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0A0-1", "protein_name": "RNA cytidine acetyltransferase", "gene_name": "NAT10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NRX1-1", "protein_name": "RNA-binding protein PNO1", "gene_name": "PNO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNQ2-1", "protein_name": "Dimethyladenosine transferase", "gene_name": "DIMT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60832-1", "protein_name": "H/ACA ribonucleoprotein complex subunit DKC1", "gene_name": "DKC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22087-1", "protein_name": "rRNA 2'-O-methyltransferase fibrillarin", "gene_name": "FBL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0S4-1", "protein_name": "Probable ATP-dependent RNA helicase DDX47", "gene_name": "DDX47", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62263-1", "protein_name": "Small ribosomal subunit protein uS11", "gene_name": "RPS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2R4-1", "protein_name": "Probable ATP-dependent RNA helicase DDX52", "gene_name": "DDX52", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96G21-1", "protein_name": "U3 small nucleolar ribonucleoprotein protein IMP4", "gene_name": "IMP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NY12-1", "protein_name": "H/ACA ribonucleoprotein complex subunit 1", "gene_name": "GAR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15880-1", "protein_name": "Small ribosomal subunit protein uS5", "gene_name": "RPS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BVJ6-1", "protein_name": "U3 small nucleolar RNA-associated protein 14 homolog A", "gene_name": "UTP14A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5J1-1", "protein_name": "U3 small nucleolar RNA-associated protein 18 homolog", "gene_name": "UTP18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NYH9-1", "protein_name": "U3 small nucleolar RNA-associated protein 6 homolog", "gene_name": "UTP6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IWA0-1", "protein_name": "WD repeat-containing protein 75", "gene_name": "WDR75", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BVI4-1", "protein_name": "Nucleolar complex protein 4 homolog", "gene_name": "NOC4L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14692-1", "protein_name": "Ribosome biogenesis protein BMS1 homolog", "gene_name": "BMS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6V7-1", "protein_name": "Probable ATP-dependent RNA helicase DDX49", "gene_name": "DDX49", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00566-1", "protein_name": "U3 small nucleolar ribonucleoprotein protein MPP10", "gene_name": "MPHOSPH10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H583-1", "protein_name": "HEAT repeat-containing protein 1", "gene_name": "HEATR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62753-1", "protein_name": "Small ribosomal subunit protein eS6", "gene_name": "RPS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75691-1", "protein_name": "Small subunit processome component 20 homolog", "gene_name": "UTP20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2P8-1", "protein_name": "RNA 3'-terminal phosphate cyclase-like protein", "gene_name": "RCL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14690-1", "protein_name": "Protein RRP5 homolog", "gene_name": "PDCD11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969X6-1", "protein_name": "U3 small nucleolar RNA-associated protein 4 homolog", "gene_name": "UTP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2X3-1", "protein_name": "Nucleolar protein 58", "gene_name": "NOP58", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H8H0-1", "protein_name": "Nucleolar protein 11", "gene_name": "NOL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78316-1", "protein_name": "Nucleolar protein 14", "gene_name": "NOP14", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43818-1", "protein_name": "U3 small nucleolar RNA-interacting protein 2", "gene_name": "RRP9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15061-1", "protein_name": "WD repeat-containing protein 43", "gene_name": "WDR43", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NV31-1", "protein_name": "U3 small nucleolar ribonucleoprotein protein IMP3", "gene_name": "IMP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NV06-1", "protein_name": "DDB1- and CUL4-associated factor 13", "gene_name": "DCAF13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13601-1", "protein_name": "KRR1 small subunit processome component homolog", "gene_name": "KRR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62081-1", "protein_name": "Small ribosomal subunit protein eS7", "gene_name": "RPS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H6R4-1", "protein_name": "Nucleolar protein 6", "gene_name": "NOL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TED0-1", "protein_name": "U3 small nucleolar RNA-associated protein 15 homolog", "gene_name": "UTP15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UJK0-1", "protein_name": "18S rRNA aminocarboxypropyltransferase", "gene_name": "TSR3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15213-1", "protein_name": "WD repeat-containing protein 46", "gene_name": "WDR46", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NXG2-1", "protein_name": "THUMP domain-containing protein 1", "gene_name": "THUMPD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NI36-1", "protein_name": "WD repeat-containing protein 36", "gene_name": "WDR36", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNX4-1", "protein_name": "WD repeat-containing protein 3", "gene_name": "WDR3", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q96EU6", "url": "https://www.uniprot.org/uniprotkb/Q96EU6" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.9211966", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], 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"gene_name": "NOP56", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55769-1", "protein_name": "NHP2-like protein 1", "gene_name": "SNU13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NPE3-1", "protein_name": "H/ACA ribonucleoprotein complex subunit 3", "gene_name": "NOP10", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46087-1", "protein_name": "28S rRNA (cytosine(4447)-C(5))-methyltransferase", "gene_name": "NOP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y3A2-1", "protein_name": "Probable U3 small nucleolar RNA-associated protein 11", "gene_name": "UTP11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NQZ2-1", "protein_name": "Something about silencing protein 10", "gene_name": "UTP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q68CQ4-1", "protein_name": "U3 small nucleolar RNA-associated protein 25 homolog", "gene_name": "UTP25", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IY37-1", "protein_name": "Probable ATP-dependent RNA helicase 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"gene_name": "PNO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNQ2-1", "protein_name": "Dimethyladenosine transferase", "gene_name": "DIMT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60832-1", "protein_name": "H/ACA ribonucleoprotein complex subunit DKC1", "gene_name": "DKC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P22087-1", "protein_name": "rRNA 2'-O-methyltransferase fibrillarin", "gene_name": "FBL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H0S4-1", "protein_name": "Probable ATP-dependent RNA helicase DDX47", "gene_name": "DDX47", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62263-1", "protein_name": "Small ribosomal subunit protein uS11", "gene_name": "RPS14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2R4-1", "protein_name": "Probable ATP-dependent RNA helicase DDX52", "gene_name": "DDX52", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96G21-1", "protein_name": "U3 small nucleolar ribonucleoprotein protein IMP4", 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protein 4 homolog", "gene_name": "NOC4L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14692-1", "protein_name": "Ribosome biogenesis protein BMS1 homolog", "gene_name": "BMS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6V7-1", "protein_name": "Probable ATP-dependent RNA helicase DDX49", "gene_name": "DDX49", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00566-1", "protein_name": "U3 small nucleolar ribonucleoprotein protein MPP10", "gene_name": "MPHOSPH10", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H583-1", "protein_name": "HEAT repeat-containing protein 1", "gene_name": "HEATR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62753-1", "protein_name": "Small ribosomal subunit protein eS6", "gene_name": "RPS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75691-1", "protein_name": "Small subunit processome component 20 homolog", "gene_name": "UTP20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2P8-1", "protein_name": "RNA 3'-terminal phosphate cyclase-like protein", "gene_name": "RCL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14690-1", "protein_name": "Protein RRP5 homolog", "gene_name": "PDCD11", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q969X6-1", "protein_name": "U3 small nucleolar RNA-associated protein 4 homolog", "gene_name": "UTP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2X3-1", "protein_name": "Nucleolar protein 58", "gene_name": "NOP58", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H8H0-1", "protein_name": "Nucleolar protein 11", "gene_name": "NOL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P78316-1", "protein_name": "Nucleolar protein 14", "gene_name": "NOP14", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43818-1", "protein_name": "U3 small nucleolar RNA-interacting protein 2", "gene_name": "RRP9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15061-1", "protein_name": "WD repeat-containing protein 43", "gene_name": "WDR43", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NV31-1", "protein_name": "U3 small nucleolar ribonucleoprotein protein IMP3", "gene_name": "IMP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NV06-1", "protein_name": "DDB1- and CUL4-associated factor 13", "gene_name": "DCAF13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13601-1", "protein_name": "KRR1 small subunit processome component homolog", "gene_name": "KRR1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62081-1", "protein_name": "Small ribosomal subunit protein eS7", "gene_name": "RPS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H6R4-1", "protein_name": "Nucleolar protein 6", "gene_name": "NOL6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TED0-1", "protein_name": "U3 small nucleolar RNA-associated protein 15 homolog", "gene_name": "UTP15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UJK0-1", "protein_name": "18S rRNA aminocarboxypropyltransferase", "gene_name": "TSR3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15213-1", "protein_name": "WD repeat-containing protein 46", "gene_name": "WDR46", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NXG2-1", "protein_name": "THUMP domain-containing protein 1", "gene_name": "THUMPD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NI36-1", "protein_name": "WD repeat-containing protein 36", "gene_name": "WDR36", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNX4-1", "protein_name": "WD repeat-containing protein 3", "gene_name": "WDR3", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q96EU6", "url": "https://www.uniprot.org/uniprotkb/Q96EU6" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.9512526", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", 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Biol. Chem.", "date": "2000", "authors": "Lyman SD, Escobar S, Rousseau AM, Armstrong A, Fanslow WC", "reference": { "type": "PubMed", "id": "10652336", "url": "https://pubmed.ncbi.nlm.nih.gov/10652336" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8WVN6-1", "protein_name": "Secreted and transmembrane protein 1", "gene_name": "SECTM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50283-1", "protein_name": "T-cell antigen CD7", "gene_name": "Cd7", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9JL59-1", "protein_name": "Secreted and transmembrane protein 1b", "gene_name": "Sectm1b", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P09564-1", "protein_name": "T-cell antigen CD7", "gene_name": "CD7", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q8WVN6", "url": "https://www.uniprot.org/uniprotkb/Q8WVN6" } ], "common_name": "Human", "glygen_name": "Human", 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"field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Expression of the CD7 ligand K-12 in human thymic epithelial cells: regulation by IFN-gamma.", "journal": "Journal of clinical immunology", "date": "2005-01", "authors": "Lam Gordon K, Liao Hua-Xin, Xue Yan, Alam S Munir, Scearce Richard M, Kaufman Russel E, Sempowski Gregory D, Haynes Barton F", "reference": { "type": "PubMed", "id": "15742156", "url": "https://pubmed.ncbi.nlm.nih.gov/15742156" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8WVN6-1", "protein_name": "Secreted and transmembrane protein 1", "gene_name": "SECTM1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q8WVN6", "url": "https://www.uniprot.org/uniprotkb/Q8WVN6" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.15742156", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", 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], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "SECTM1 produced by tumor cells attracts human monocytes via CD7-mediated activation of the PI3K pathway.", "journal": "The Journal of investigative dermatology", "date": "2014", "authors": "Wang T, Ge Y, Xiao M, Lopez-Coral A, Li L, Roesch A, Huang C, Alexander P, Vogt T, Xu X, Hwang WT, Lieu M, Belser E, Liu R, Somasundaram R, Herlyn M, Kaufman RE", "reference": { "type": "PubMed", "id": "24157461", "url": "https://pubmed.ncbi.nlm.nih.gov/24157461" }, "referenced_glycans": [], "referenced_proteins": [ { 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"common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.24211252", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", 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pathway.", "journal": "International journal of biological sciences", "date": "2024", "authors": "Yao Zhipeng, Zhang Fan, Qi Chenxue, Wang Cheng, Mao Min, Zhao Chenhui, Qi Min, Wang Zhichun, Zhou Guoren, Jiang Xiaochun, Xia Hongping", "reference": { "type": "PubMed", "id": "38164182", "url": "https://pubmed.ncbi.nlm.nih.gov/38164182" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8WVN6-1", "protein_name": "Secreted and transmembrane protein 1", "gene_name": "SECTM1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q8WVN6", "url": "https://www.uniprot.org/uniprotkb/Q8WVN6" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.38164182", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { 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"count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Identification and characterization of K12 (SECTM1), a novel human gene that encodes a Golgi-associated protein with transmembrane and secreted isoforms.", "journal": "Genomics", "date": "1998", "authors": "Slentz-Kesler K A, Hale L P, Kaufman R E", "reference": { "type": "PubMed", "id": "9480746", "url": "https://pubmed.ncbi.nlm.nih.gov/9480746" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8WVN6-1", "protein_name": "Secreted and transmembrane protein 1", "gene_name": "SECTM1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q8WVN6", "url": "https://www.uniprot.org/uniprotkb/Q8WVN6" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.9480746", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", 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0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Differential association of HLA-B*2705 and B*2709 to ankylosing spondylitis correlates with limited peptide subsets but not with altered cell surface stability.", "journal": "The Journal of biological chemistry", "date": "2002-08-09", "authors": "Ramos Manuel, Paradela Alberto, Vazquez Miriam, Marina Anabel, Vazquez Jesus, Lopez de Castro Jose A", "reference": { "type": "PubMed", "id": "12042320", "url": "https://pubmed.ncbi.nlm.nih.gov/12042320" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P08708-1", "protein_name": "Small ribosomal subunit protein eS17", "gene_name": "RPS17", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5A9-1", "protein_name": "YTH domain-containing family protein 2", "gene_name": "YTHDF2", "tax_name": "Human" }, { "uniprot_canonical_ac": 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"Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "Kxd1; Uba52", "tax_name": "Rat" }, { "uniprot_canonical_ac": "P62703-1", "protein_name": "Small ribosomal subunit protein eS4", "gene_name": "Rps4x", "tax_name": "Rat" }, { "uniprot_canonical_ac": "Q07352-1", "protein_name": "mRNA decay activator protein ZFP36L1", "gene_name": "ZFP36L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P2J5-1", "protein_name": "Leucine--tRNA ligase, cytoplasmic", "gene_name": "LARS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBE0-1", "protein_name": "SUMO-activating enzyme subunit 1", "gene_name": "SAE1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15910-1", "protein_name": "Histone-lysine N-methyltransferase EZH2", "gene_name": "EZH2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99615-1", "protein_name": "DnaJ homolog subfamily C member 7", "gene_name": "DNAJC7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NY97-1", "protein_name": "N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 2", "gene_name": "B3GNT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63221-1", "protein_name": "Small ribosomal subunit protein eS21", "gene_name": "LOC100518848; RPS21", "tax_name": "Pig" }, { "uniprot_canonical_ac": "P62197-1", "protein_name": "26S proteasome regulatory subunit 8", "gene_name": "PSMC5", "tax_name": "Pig" }, { "uniprot_canonical_ac": "P62316-1", "protein_name": "Small nuclear ribonucleoprotein Sm D2", "gene_name": "SNRPD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17844-1", "protein_name": "Probable ATP-dependent RNA helicase DDX5", "gene_name": "DDX5", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43293-1", "protein_name": "Death-associated protein kinase 3", "gene_name": "DAPK3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07195-1", "protein_name": "L-lactate dehydrogenase B chain", "gene_name": "LDHB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2TAY7-1", "protein_name": "WD40 repeat-containing protein SMU1", "gene_name": "SMU1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63053-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Pig" }, { "uniprot_canonical_ac": "P18124-1", "protein_name": "Large ribosomal subunit protein uL30", "gene_name": "RPL7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49721-1", "protein_name": "Proteasome subunit beta type-2", "gene_name": "PSMB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20618-1", "protein_name": "Proteasome subunit beta type-1", "gene_name": "PSMB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15435-1", "protein_name": "Protein phosphatase 1 regulatory subunit 7", "gene_name": "PPP1R7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NRC6-1", "protein_name": "Spectrin beta chain, non-erythrocytic 5", "gene_name": "SPTBN5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BRL6-1", "protein_name": "Serine/arginine-rich splicing factor 8", "gene_name": "SRSF8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P37268-1", "protein_name": "Squalene synthase", "gene_name": "FDFT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75131-1", "protein_name": "Copine-3", "gene_name": "CPNE3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62919-1", "protein_name": "Large ribosomal subunit protein uL2", "gene_name": "Commd5; Rpl8-ps7; Rpl8", "tax_name": "Rat" }, { "uniprot_canonical_ac": "P62425-1", "protein_name": "Large ribosomal subunit protein eL8", "gene_name": "AABR07003273.1; LOC134483817; LOC134486107; Rpl7a", "tax_name": "Rat" }, { "uniprot_canonical_ac": "P62853-1", "protein_name": "Small ribosomal subunit protein eS25", "gene_name": "Rps25l2; Rps25l3; Rps25", "tax_name": "Rat" }, { "uniprot_canonical_ac": "P84100-1", "protein_name": "Large ribosomal subunit protein eL19", "gene_name": "Rpl19", "tax_name": "Rat" }, { "uniprot_canonical_ac": "P11142-1", "protein_name": "Heat shock cognate 71 kDa protein", "gene_name": "HSPA8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P69905-1", "protein_name": "Hemoglobin subunit alpha", "gene_name": "HBA1; HBA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7L5N1-1", "protein_name": "COP9 signalosome complex subunit 6", "gene_name": "COPS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52272-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein M", "gene_name": "HNRNPM", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49458-1", "protein_name": "Signal recognition particle 9 kDa protein", "gene_name": "SRP9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NTJ3-1", "protein_name": "Structural maintenance of chromosomes protein 4", "gene_name": "SMC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60313-1", "protein_name": "Dynamin-like GTPase OPA1, mitochondrial", "gene_name": "OPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55884-1", "protein_name": "Eukaryotic translation initiation factor 3 subunit B", "gene_name": "EIF3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15239-1", "protein_name": "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1", "gene_name": "NDUFA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63271-1", "protein_name": "Transcription elongation factor SPT4-A", "gene_name": "Supt4a; Supt4h1a", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9Y5Y5-1", "protein_name": "Peroxisomal membrane protein PEX16", "gene_name": "PEX16", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P0J0-1", "protein_name": "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13", "gene_name": "NDUFA13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BZL6-1", "protein_name": "Serine/threonine-protein kinase D2", "gene_name": "PRKD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36578-1", "protein_name": "Large ribosomal subunit protein uL4", "gene_name": "RPL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P21281-1", "protein_name": "V-type proton ATPase subunit B, brain isoform", "gene_name": "ATP6V1B2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15155-1", "protein_name": "BOS complex subunit NOMO1", "gene_name": "NOMO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13564-1", "protein_name": "NEDD8-activating enzyme E1 regulatory subunit", "gene_name": "NAE1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46779-1", "protein_name": "Large ribosomal subunit protein eL28", "gene_name": "RPL28", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00165-1", "protein_name": "HCLS1-associated protein X-1", "gene_name": "HAX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14289-1", "protein_name": "Protein-tyrosine kinase 2-beta", "gene_name": "PTK2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30101-1", "protein_name": "Protein disulfide-isomerase A3", "gene_name": "PDIA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30532-1", "protein_name": "Neuronal acetylcholine receptor subunit alpha-5", "gene_name": "CHRNA5", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P08708", "url": "https://www.uniprot.org/uniprotkb/P08708" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.12042320", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 59 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": 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Mutat.", "date": "2007", "authors": "Cmejla Radek, Cmejlova Jana, Handrkova Helena, Petrak Jiri, Pospisilova Dagmar", "reference": { "type": "PubMed", "id": "17647292", "url": "https://pubmed.ncbi.nlm.nih.gov/17647292" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P08708-1", "protein_name": "Small ribosomal subunit protein eS17", "gene_name": "RPS17", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P08708", "url": "https://www.uniprot.org/uniprotkb/P08708" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.17647292", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Ribosomal protein L5 and L11 mutations are associated with cleft palate and abnormal thumbs in Diamond-Blackfan anemia patients.", "journal": "Am. J. Hum. Genet.", "date": "2008", "authors": "Gazda HT, Sheen MR, Vlachos A, Choesmel V, O'Donohue MF, Schneider H, Darras N, Hasman C, Sieff CA, Newburger PE, Ball SE, Niewiadomska E, Matysiak M, Zaucha JM, Glader B, Niemeyer C, Meerpohl JJ, Atsidaftos E, Lipton JM, Gleizes PE, Beggs AH", "reference": { "type": "PubMed", "id": "19061985", "url": "https://pubmed.ncbi.nlm.nih.gov/19061985" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P08708-1", "protein_name": "Small ribosomal subunit protein eS17", "gene_name": "RPS17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46777-1", "protein_name": "Large ribosomal subunit protein uL18", "gene_name": "RPL5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62913-1", "protein_name": "Large ribosomal subunit protein uL5", "gene_name": "RPL11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62081-1", "protein_name": "Small ribosomal subunit protein eS7", "gene_name": "RPS7", "tax_name": "Human" } ], 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"Homologous ribosomal proteins in bacteria, yeast, and humans.", "journal": "Proc. Natl. Acad. Sci. U.S.A.", "date": "1986", "authors": "Chen IT, Dixit A, Rhoads DD, Roufa DJ", "reference": { "type": "PubMed", "id": "3529092", "url": "https://pubmed.ncbi.nlm.nih.gov/3529092" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P08708-1", "protein_name": "Small ribosomal subunit protein eS17", "gene_name": "RPS17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63274-1", "protein_name": "Small ribosomal subunit protein eS17", "gene_name": "RPS17", "tax_name": "Chinese hamster" }, { "uniprot_canonical_ac": "P62263-1", "protein_name": "Small ribosomal subunit protein uS11", "gene_name": "RPS14", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P08708", "url": "https://www.uniprot.org/uniprotkb/P08708" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.3529092", "abstract": "", "glycosylation": [], 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Mol. Genet.", "date": "2008", "authors": "Capon F, Bijlmakers MJ, Wolf N, Quaranta M, Huffmeier U, Allen M, Timms K, Abkevich V, Gutin A, Smith R, Warren RB, Young HS, Worthington J, Burden AD, Griffiths CE, Hayday A, Nestle FO, Reis A, Lanchbury J, Barker JN, Trembath RC", "reference": { "type": "PubMed", "id": "18364390", "url": "https://pubmed.ncbi.nlm.nih.gov/18364390" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9Y508-1", "protein_name": "E3 ubiquitin-protein ligase RNF114", "gene_name": "RNF114", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9Y508", "url": "https://www.uniprot.org/uniprotkb/Q9Y508" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.18364390", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": 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[] } ] }, { "title": "Regulation of RANKL-induced osteoclastogenesis by RING finger protein RNF114.", "journal": "Journal of orthopaedic research : official publication of the Orthopaedic Research Society", "date": "2018-01", "authors": "Lin Boren, Ke Qi, Leaman Douglas W, Goel Vijay, Agarwal Anand", "reference": { "type": "PubMed", "id": "28708287", "url": "https://pubmed.ncbi.nlm.nih.gov/28708287" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9Y508-1", "protein_name": "E3 ubiquitin-protein ligase RNF114", "gene_name": "RNF114", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q9Y508", "url": "https://www.uniprot.org/uniprotkb/Q9Y508" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.28708287", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], 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