[ { "title": "G Protein-coupled receptor kinases phosphorylate LRP6 in the Wnt pathway.", "journal": "J. Biol. Chem.", "date": "2009", "authors": "Chen M, Philipp M, Wang J, Premont RT, Garrison TR, Caron MG, Lefkowitz RJ, Chen W", "reference": { "type": "PubMed", "id": "19801552", "url": "https://pubmed.ncbi.nlm.nih.gov/19801552" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QTJ4-1", "protein_name": "Low-density lipoprotein receptor-related protein 5 isoform 1 precursor", "gene_name": "lrp5", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "O75581-1", "protein_name": "Low-density lipoprotein receptor-related protein 6", "gene_name": "LRP6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P34947-1", "protein_name": "G protein-coupled receptor kinase 5", "gene_name": "GRK5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P43250-1", "protein_name": "G protein-coupled receptor kinase 6", "gene_name": "GRK6", "tax_name": "Human" }, { "uniprot_canonical_ac": "A0AC58GKA8-1", "protein_name": "G protein-coupled receptor kinase", "gene_name": "grk5", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QTJ4", "url": "https://www.uniprot.org/uniprotkb/F1QTJ4" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "phosphorylation": [ { "start_pos": 1448, "end_pos": 1448, "kinase_uniprot_canonical_ac": "P34947-1", "kinase_gene_name": "GRK5", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O75581", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O75581" }, { "database": "PubMed", "id": "19801552", "url": "https://pubmed.ncbi.nlm.nih.gov/19801552" } ], "site_lbl": "Ser1448", "uniprot_canonical_ac": "O75581-1" }, { "start_pos": 1448, "end_pos": 1448, "kinase_uniprot_canonical_ac": "P43250-1", "kinase_gene_name": "GRK6", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O75581", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O75581" }, { "database": "PubMed", "id": "19801552", "url": "https://pubmed.ncbi.nlm.nih.gov/19801552" } ], "site_lbl": "Ser1448", "uniprot_canonical_ac": "O75581-1" }, { "start_pos": 1450, "end_pos": 1450, "kinase_uniprot_canonical_ac": "P34947-1", "kinase_gene_name": "GRK5", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O75581", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O75581" }, { "database": "PubMed", "id": "19801552", "url": "https://pubmed.ncbi.nlm.nih.gov/19801552" } ], "site_lbl": "Ser1450", "uniprot_canonical_ac": "O75581-1" }, { "start_pos": 1490, "end_pos": 1490, "kinase_uniprot_canonical_ac": "P34947-1", "kinase_gene_name": "GRK5", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O75581", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O75581" }, { "database": "PubMed", "id": "19801552", "url": "https://pubmed.ncbi.nlm.nih.gov/19801552" } ], "site_lbl": "Ser1490", "uniprot_canonical_ac": "O75581-1" }, { "start_pos": 1490, "end_pos": 1490, "kinase_uniprot_canonical_ac": "P43250-1", "kinase_gene_name": "GRK6", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O75581", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O75581" }, { "database": "PubMed", "id": "19801552", "url": "https://pubmed.ncbi.nlm.nih.gov/19801552" } ], "site_lbl": "Ser1490", "uniprot_canonical_ac": "O75581-1" }, { "start_pos": 1490, "end_pos": 1490, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Ser", "comment": "Phosphoserine; by CDK14, GRK5 and GRK6", "evidence": [ { "database": "UniProtKB", "id": "O75581", "url": "https://www.uniprot.org/uniprotkb/O75581" }, { "database": "IntAct", "id": "O75581", "url": "https://www.ebi.ac.uk/intact/interactors/id:O75581*" }, { "database": "iPTMnet", "id": "O75581", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O75581" }, { "database": "PubMed", "id": "19107203", "url": "https://pubmed.ncbi.nlm.nih.gov/19107203" }, { "database": "PubMed", "id": "18762581", "url": "https://pubmed.ncbi.nlm.nih.gov/18762581" }, { "database": "PubMed", "id": "18772438", "url": "https://pubmed.ncbi.nlm.nih.gov/18772438" }, { "database": "PubMed", "id": "22246988", "url": "https://pubmed.ncbi.nlm.nih.gov/22246988" }, { "database": "PubMed", "id": "22357953", "url": "https://pubmed.ncbi.nlm.nih.gov/22357953" }, { "database": "PubMed", "id": "22558232", "url": "https://pubmed.ncbi.nlm.nih.gov/22558232" }, { "database": "PubMed", "id": "23400998", "url": "https://pubmed.ncbi.nlm.nih.gov/23400998" }, { "database": "PubMed", "id": "23638027", "url": "https://pubmed.ncbi.nlm.nih.gov/23638027" }, { "database": "PubMed", "id": "24265322", "url": "https://pubmed.ncbi.nlm.nih.gov/24265322" }, { "database": "PubMed", "id": "25500543", "url": "https://pubmed.ncbi.nlm.nih.gov/25500543" }, { "database": "PubMed", "id": "27203244", "url": "https://pubmed.ncbi.nlm.nih.gov/27203244" }, { "database": "PubMed", "id": "27530555", "url": "https://pubmed.ncbi.nlm.nih.gov/27530555" }, { "database": "PubMed", "id": "27821587", "url": "https://pubmed.ncbi.nlm.nih.gov/27821587" }, { "database": "PubMed", "id": "28674183", "url": "https://pubmed.ncbi.nlm.nih.gov/28674183" }, { "database": "PubMed", "id": "29444668", "url": "https://pubmed.ncbi.nlm.nih.gov/29444668" }, { "database": "PubMed", "id": "30109182", "url": "https://pubmed.ncbi.nlm.nih.gov/30109182" }, { "database": "PubMed", "id": "30664649", "url": "https://pubmed.ncbi.nlm.nih.gov/30664649" }, { "database": "PubMed", "id": "32527265", "url": "https://pubmed.ncbi.nlm.nih.gov/32527265" }, { "database": "PubMed", "id": "32973331", "url": "https://pubmed.ncbi.nlm.nih.gov/32973331" }, { "database": "PubMed", "id": "33200460", "url": "https://pubmed.ncbi.nlm.nih.gov/33200460" }, { "database": "PubMed", "id": "33287247", "url": "https://pubmed.ncbi.nlm.nih.gov/33287247" }, { "database": "PubMed", "id": "35483665", "url": "https://pubmed.ncbi.nlm.nih.gov/35483665" }, { "database": "PubMed", "id": "35637196", "url": "https://pubmed.ncbi.nlm.nih.gov/35637196" }, { "database": "PubMed", "id": "17698587", "url": "https://pubmed.ncbi.nlm.nih.gov/17698587" }, { "database": "PubMed", "id": "19801552", "url": "https://pubmed.ncbi.nlm.nih.gov/19801552" }, { "database": "PubMed", "id": "20059949", "url": "https://pubmed.ncbi.nlm.nih.gov/20059949" }, { "database": "PubMed", "id": "23186163", "url": "https://pubmed.ncbi.nlm.nih.gov/23186163" }, { "database": "PubMed", "id": "25331957", "url": "https://pubmed.ncbi.nlm.nih.gov/25331957" }, { "database": "PubMed", "id": "16341017", "url": "https://pubmed.ncbi.nlm.nih.gov/16341017" } ], "site_lbl": "Ser1490", "uniprot_canonical_ac": "O75581-1" }, { "start_pos": 1508, "end_pos": 1508, "kinase_uniprot_canonical_ac": "P34947-1", "kinase_gene_name": "GRK5", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O75581", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O75581" }, { "database": "PubMed", "id": "19801552", "url": "https://pubmed.ncbi.nlm.nih.gov/19801552" } ], "site_lbl": "Ser1508", "uniprot_canonical_ac": "O75581-1" }, { "start_pos": 1508, "end_pos": 1508, "kinase_uniprot_canonical_ac": "P43250-1", "kinase_gene_name": "GRK6", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O75581", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O75581" }, { "database": "PubMed", "id": "19801552", "url": "https://pubmed.ncbi.nlm.nih.gov/19801552" } ], "site_lbl": "Ser1508", "uniprot_canonical_ac": "O75581-1" }, { "start_pos": 1572, "end_pos": 1572, "kinase_uniprot_canonical_ac": "P34947-1", "kinase_gene_name": "GRK5", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O75581", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O75581" }, { "database": "PubMed", "id": "19801552", "url": "https://pubmed.ncbi.nlm.nih.gov/19801552" } ], "site_lbl": "Thr1572", "uniprot_canonical_ac": "O75581-1" }, { "start_pos": 1572, "end_pos": 1572, "kinase_uniprot_canonical_ac": "P43250-1", "kinase_gene_name": "GRK6", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O75581", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O75581" }, { "database": "PubMed", "id": "19801552", "url": "https://pubmed.ncbi.nlm.nih.gov/19801552" } ], "site_lbl": "Thr1572", "uniprot_canonical_ac": "O75581-1" }, { "start_pos": 1590, "end_pos": 1590, "kinase_uniprot_canonical_ac": "P34947-1", "kinase_gene_name": "GRK5", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O75581", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O75581" }, { "database": "PubMed", "id": "19801552", "url": "https://pubmed.ncbi.nlm.nih.gov/19801552" } ], "site_lbl": "Ser1590", "uniprot_canonical_ac": "O75581-1" }, { "start_pos": 1590, "end_pos": 1590, "kinase_uniprot_canonical_ac": "P43250-1", "kinase_gene_name": "GRK6", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O75581", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O75581" }, { "database": "PubMed", "id": "19801552", "url": "https://pubmed.ncbi.nlm.nih.gov/19801552" } ], "site_lbl": "Ser1590", "uniprot_canonical_ac": "O75581-1" }, { "start_pos": 1607, "end_pos": 1607, "kinase_uniprot_canonical_ac": "P34947-1", "kinase_gene_name": "GRK5", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "O75581", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/O75581" }, { "database": "PubMed", "id": "19801552", "url": "https://pubmed.ncbi.nlm.nih.gov/19801552" } ], "site_lbl": "Ser1607", "uniprot_canonical_ac": "O75581-1" } ], "record_id": "pubmed.19801552", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 13 }, { "field": "total_sites", "count": 7 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Wnt/beta-catenin signaling defines organizing centers that orchestrate growth and differentiation of the regenerating zebrafish caudal fin.", "journal": "Cell Rep.", "date": "2014", "authors": "Wehner Daniel, Cizelsky Wiebke, Vasudevaro Mohankrishna Dalvoy, Ozhan G\u00fcnes, Haase Christa, Kagermeier-Schenk Birgit, R\u00f6der Alexander, Dorsky Richard I, Moro Enrico, Argenton Francesco, K\u00fchl Michael, Weidinger Gilbert", "reference": { "type": "PubMed", "id": "24485658", "url": "https://pubmed.ncbi.nlm.nih.gov/24485658" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QTJ4-1", "protein_name": "Low-density lipoprotein receptor-related protein 5 isoform 1 precursor", "gene_name": "lrp5", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QTJ4", "url": "https://www.uniprot.org/uniprotkb/F1QTJ4" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.24485658", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "TFG mutation induces haploinsufficiency and drives axonal Charcot-Marie-Tooth disease by causing neurite degeneration.", "journal": "CNS Neurosci. Ther.", "date": "2022", "authors": "Chen Xihui, Liu Fangfang, Chen Kun, Wang Yufeng, Yin Anan, Kang Xiaowei, Yang Shanming, Zhao Hanwen, Dong Songqi, Li Yunqing, Chen Jing, Wu Yuanming", "reference": { "type": "PubMed", "id": "35986567", "url": "https://pubmed.ncbi.nlm.nih.gov/35986567" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QTJ4-1", "protein_name": "Low-density lipoprotein receptor-related protein 5 isoform 1 precursor", "gene_name": "lrp5", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QTJ4", "url": "https://www.uniprot.org/uniprotkb/F1QTJ4" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.35986567", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "ALPK2 Promotes Cardiogenesis in Zebrafish and Human Pluripotent Stem Cells.", "journal": "iScience", "date": "2018-04-27", "authors": "Hofsteen Peter, Robitaille Aaron Mark, Strash Nicholas, Palpant Nathan, Moon Randall T, Pabon Lil, Murry Charles E", "reference": { "type": "PubMed", "id": "29888752", "url": "https://pubmed.ncbi.nlm.nih.gov/29888752" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QU13-1", "protein_name": "Alpha-protein kinase 2", "gene_name": "alpk2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q86TB3-1", "protein_name": "Alpha-protein kinase 2", "gene_name": "ALPK2", "tax_name": "Human" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QU13", "url": "https://www.uniprot.org/uniprotkb/F1QU13" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.29888752", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Thalidomide-induced antiangiogenic action is mediated by ceramide through depletion of VEGF receptors, and is antagonized by sphingosine-1-phosphate.", "journal": "Blood", "date": "2005", "authors": "Yabu Takeshi, Tomimoto Hidekazu, Taguchi Yoshimitsu, Yamaoka Shohei, Igarashi Yasuyuki, Okazaki Toshiro", "reference": { "type": "PubMed", "id": "15741222", "url": "https://pubmed.ncbi.nlm.nih.gov/15741222" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QUD7-1", "protein_name": "Sphingomyelin phosphodiesterase 2", "gene_name": "smpd2a", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QUD7", "url": "https://www.uniprot.org/uniprotkb/F1QUD7" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.15741222", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Leukocyte tyrosine kinase functions in pigment cell development.", "journal": "PLoS genetics", "date": "2008-03-07", "authors": "Lopes Susana S, Yang Xueyan, M\u00fcller Jeanette, Carney Thomas J, McAdow Anthony R, Rauch Gerd-J\u00f6rg, Jacoby Arie S, Hurst Laurence D, Delfino-Mach\u00edn Mariana, Haffter Pascal, Geisler Robert, Johnson Stephen L, Ward Andrew, Kelsh Robert N", "reference": { "type": "PubMed", "id": "18369445", "url": "https://pubmed.ncbi.nlm.nih.gov/18369445" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QVU0-1", "protein_name": "Tyrosine-protein kinase receptor", "gene_name": "ltk", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QVU0", "url": "https://www.uniprot.org/uniprotkb/F1QVU0" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "mutagenesis": [ { "start_pos": 759, "end_pos": 759, "sequence_org": "P", "sequence_mut": "S", "comment": "In shd(j9s1) mutant; reduced iridophores in the body and eyes.", "evidence": [ { "database": "UniProtKB", "id": "F1QVU0", "url": "https://www.uniprot.org/uniprotkb/F1QVU0" }, { "database": "PubMed", "id": "18369445", "url": "https://pubmed.ncbi.nlm.nih.gov/18369445" } ], "uniprot_canonical_ac": "F1QVU0-1" }, { "start_pos": 786, "end_pos": 1530, "sequence_org": "KRDEDTKLILCLCDSDEVLAPDNVTCAGTKHSLCQFINKHLQHNSSPLVCPPLVVPMGSLADGPPSLVFIMAVIVSTVVTGVVLTCASLTLIYYRKKNHLHAVRIRLQSPEYKLSKIRSSTIMTDYNPNYGYFGKAASLSELKEVPRKNITLLRALGHGAFGEVYEGQVLGMNGENTAMQVAIKTLPEICSEQDEMDFLMEALIMSKFSHQNIVRCIGVSLQILPRFILLELMTGGDMKSFLRLNRPRTNHSSSLSMLELLHMARDIALGCRYLEENHFIHRDIAARNCLLTCPGPDRVAKIGDFGMARDIYRASYYRKGGRAMLPVKWMPPEAFLEGIFTCKTDTWSFGVLLWEIFSLGYMPYPCKTNQEVLEFVTGGGRMDPPKSCPGPVYRIMTQCWQHCPEHRPNFTTILERINYCTQDPDVINTPLPVECGPPVEEEGGTVIRPDGSGSMTPLLVARSLSQDASPRASITSVTPQALKPRLQLQRPVHLTQEVGTYRETLEPCWAEPVPASGVCPGPWLQVPEHRPCSRSSSSSGSQKLKNKTKNLWNPTYGSWVLESFGRGKSALCHTQSMPLSCNPTSVSAPSSTSEHTDPVVEVNANVSASPPPSAAPSQTTLTPTAAPSRKSPTGAAGVSLATVMDLAKLQSFPCGNVNYAYDEQSYETESLPVVVSKSLEPSTSSAATSSLVALSQPGSFTHKPLVKRHASYGHEDVRRYTQPEKPTRDRDSGFSLSEDLSVTPV", "sequence_mut": "", "comment": "In shd(ty82) mutant; fishes have very few iridophores and die as larvae.", "evidence": [ { "database": "UniProtKB", "id": "F1QVU0", "url": "https://www.uniprot.org/uniprotkb/F1QVU0" }, { "database": "PubMed", "id": "18369445", "url": "https://pubmed.ncbi.nlm.nih.gov/18369445" } ], "uniprot_canonical_ac": "F1QVU0-1" } ], "record_id": "pubmed.18369445", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A simple, highly visual in vivo screen for anaplastic lymphoma kinase inhibitors.", "journal": "ACS Chem. Biol.", "date": "2012", "authors": "Rodrigues Frederico S L M, Yang Xueyan, Nikaido Masataka, Liu Qingsong, Kelsh Robert N", "reference": { "type": "PubMed", "id": "22985331", "url": "https://pubmed.ncbi.nlm.nih.gov/22985331" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QVU0-1", "protein_name": "Tyrosine-protein kinase receptor", "gene_name": "ltk", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F8W3R9-1", "protein_name": "ALK tyrosine kinase receptor", "gene_name": "alk", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QVU0", "url": "https://www.uniprot.org/uniprotkb/F1QVU0" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.22985331", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Iridophores and their interactions with other chromatophores are required for stripe formation in zebrafish.", "journal": "Development (Cambridge, England)", "date": "2013-07", "authors": "Frohnh\u00f6fer Hans Georg, Krauss Jana, Maischein Hans-Martin, N\u00fcsslein-Volhard Christiane", "reference": { "type": "PubMed", "id": "23821036", "url": "https://pubmed.ncbi.nlm.nih.gov/23821036" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QVU0-1", "protein_name": "Tyrosine-protein kinase receptor", "gene_name": "ltk", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QVU0", "url": "https://www.uniprot.org/uniprotkb/F1QVU0" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.23821036", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Zebrafish Leucocyte tyrosine kinase controls iridophore establishment, proliferation and survival.", "journal": "Pigment cell & melanoma research", "date": "2016-05", "authors": "Fadeev Andrey, Krauss Jana, Singh Ajeet Pratap, N\u00fcsslein-Volhard Christiane", "reference": { "type": "PubMed", "id": "26801003", "url": "https://pubmed.ncbi.nlm.nih.gov/26801003" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QVU0-1", "protein_name": "Tyrosine-protein kinase receptor", "gene_name": "ltk", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QVU0", "url": "https://www.uniprot.org/uniprotkb/F1QVU0" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "mutagenesis": [ { "start_pos": 993, "end_pos": 993, "sequence_org": "F", "sequence_mut": "I", "comment": "In mne mutant; dominant mutation; fishes display ectopic iridophore, probably caused by hyperactivity of the tyrosine kinase activity.", "evidence": [ { "database": "UniProtKB", "id": "F1QVU0", "url": "https://www.uniprot.org/uniprotkb/F1QVU0" }, { "database": "PubMed", "id": "26801003", "url": "https://pubmed.ncbi.nlm.nih.gov/26801003" } ], "uniprot_canonical_ac": "F1QVU0-1" } ], "record_id": "pubmed.26801003", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Systemic loss of Sarm1 protects Schwann cells from chemotoxicity by delaying axon degeneration.", "journal": "Communications biology", "date": "2020-01-30", "authors": "Tian Weili, Czopka Tim, L\u00f3pez-Schier Hern\u00e1n", "reference": { "type": "PubMed", "id": "32001778", "url": "https://pubmed.ncbi.nlm.nih.gov/32001778" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QWA8-1", "protein_name": "NAD(+) hydrolase SARM1", "gene_name": "sarm1", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QWA8", "url": "https://www.uniprot.org/uniprotkb/F1QWA8" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.32001778", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "E2F7 and E2F8 promote angiogenesis through transcriptional activation of VEGFA in cooperation with HIF1.", "journal": "The EMBO journal", "date": "2012", "authors": "Weijts BG, Bakker WJ, Cornelissen PW, Liang KH, Schaftenaar FH, Westendorp B, de Wolf CA, Paciejewska M, Scheele CL, Kent L, Leone G, Schulte-Merker S, de Bruin A", "reference": { "type": "PubMed", "id": "22903062", "url": "https://pubmed.ncbi.nlm.nih.gov/22903062" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1QZ88-1", "protein_name": "Transcription factor E2F8", "gene_name": "e2f8", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q6S7F2-1", "protein_name": "Transcription factor E2F7", "gene_name": "E2f7", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "A0AVK6-1", "protein_name": "Transcription factor E2F8", "gene_name": "E2F8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96AV8-1", "protein_name": "Transcription factor E2F7", "gene_name": "E2F7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5RIX9-1", "protein_name": "Transcription factor E2F7", "gene_name": "e2f7", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q58FA4-1", "protein_name": "Transcription factor E2F8", "gene_name": "E2f8", "tax_name": "Mouse" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1QZ88", "url": "https://www.uniprot.org/uniprotkb/F1QZ88" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.22903062", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The Warsaw breakage syndrome-related protein DDX11 is required for ribosomal RNA synthesis and embryonic development.", "journal": "Human molecular genetics", "date": "2015", "authors": "Sun X, Chen H, Deng Z, Hu B, Luo H, Zeng X, Han L, Cai G, Ma L", "reference": { "type": "PubMed", "id": "26089203", "url": "https://pubmed.ncbi.nlm.nih.gov/26089203" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1R345-1", "protein_name": "ATP-dependent DNA helicase DDX11", "gene_name": "ddx11", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q96FC9-1", "protein_name": "ATP-dependent DNA helicase DDX11", "gene_name": "DDX11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17480-1", "protein_name": "Nucleolar transcription factor 1", "gene_name": "UBTF", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95602-1", "protein_name": "DNA-directed RNA polymerase I subunit RPA1", "gene_name": "POLR1A", "tax_name": "Human" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1R345", "url": "https://www.uniprot.org/uniprotkb/F1R345" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.26089203", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "New gene functions in megakaryopoiesis and platelet formation.", "journal": "Nature", "date": "2011", "authors": "Gieger Christian, Radhakrishnan Aparna, Cvejic Ana, Tang Weihong, Porcu Eleonora, Pistis Giorgio, Serbanovic-Canic Jovana, Elling Ulrich, Goodall Alison H, Labrune Yann, Lopez Lorna M, M\u00e4gi Reedik, Meacham Stuart, Okada Yukinori, Pirastu Nicola, Sorice Rossella, Teumer Alexander, Voss Katrin, Zhang Weihua, Ramirez-Solis Ramiro, Bis Joshua C, Ellinghaus David, G\u00f6gele Martin, Hottenga Jouke-Jan, Langenberg Claudia, Kovacs Peter, O'Reilly Paul F, Shin So-Youn, Esko T\u00f5nu, Hartiala Jaana, Kanoni Stavroula, Murgia Federico, Parsa Afshin, Stephens Jonathan, van der Harst Pim, Ellen van der Schoot C, Allayee Hooman, Attwood Antony, Balkau Beverley, Bastardot Fran\u00e7ois, Basu Saonli, Baumeister Sebastian E, Biino Ginevra, Bomba Lorenzo, Bonnefond Am\u00e9lie, Cambien Fran\u00e7ois, Chambers John C, Cucca Francesco, D'Adamo Pio, Davies Gail, de Boer Rudolf A, de Geus Eco J C, D\u00f6ring Angela, Elliott Paul, Erdmann Jeanette, Evans David M, Falchi Mario, Feng Wei, Folsom Aaron R, Frazer Ian H, Gibson Quince D, Glazer Nicole L, Hammond Chris, Hartikainen Anna-Liisa, Heckbert Susan R, Hengstenberg Christian, Hersch Micha, Illig Thomas, Loos Ruth J F, Jolley Jennifer, Khaw Kay Tee, K\u00fchnel Brigitte, Kyrtsonis Marie-Christine, Lagou Vasiliki, Lloyd-Jones Heather, Lumley Thomas, Mangino Massimo, Maschio Andrea, Mateo Leach Irene, McKnight Barbara, Memari Yasin, Mitchell Braxton D, Montgomery Grant W, Nakamura Yusuke, Nauck Matthias, Navis Gerjan, N\u00f6thlings Ute, Nolte Ilja M, Porteous David J, Pouta Anneli, Pramstaller Peter P, Pullat Janne, Ring Susan M, Rotter Jerome I, Ruggiero Daniela, Ruokonen Aimo, Sala Cinzia, Samani Nilesh J, Sambrook Jennifer, Schlessinger David, Schreiber Stefan, Schunkert Heribert, Scott James, Smith Nicholas L, Snieder Harold, Starr John M, Stumvoll Michael, Takahashi Atsushi, Tang W H Wilson, Taylor Kent, Tenesa Albert, Lay Thein Swee, T\u00f6njes Anke, Uda Manuela, Ulivi Sheila, van Veldhuisen Dirk J, Visscher Peter M, V\u00f6lker Uwe, Wichmann H-Erich, Wiggins Kerri L, Willemsen Gonneke, Yang Tsun-Po, Hua Zhao Jing, Zitting Paavo, Bradley John R, Dedoussis George V, Gasparini Paolo, Hazen Stanley L, Metspalu Andres, Pirastu Mario, Shuldiner Alan R, Joost van Pelt L, Zwaginga Jaap-Jan, Boomsma Dorret I, Deary Ian J, Franke Andre, Froguel Philippe, Ganesh Santhi K, Jarvelin Marjo-Riitta, Martin Nicholas G, Meisinger Christa, Psaty Bruce M, Spector Timothy D, Wareham Nicholas J, Akkerman Jan-Willem N, Ciullo Marina, Deloukas Panos, Greinacher Andreas, Jupe Steve, Kamatani Naoyuki, Khadake Jyoti, Kooner Jaspal S, Penninger Josef, Prokopenko Inga, Stemple Derek, Toniolo Daniela, Wernisch Lorenz, Sanna Serena, Hicks Andrew A, Rendon Augusto, Ferreira Manuel A, Ouwehand Willem H, Soranzo Nicole", "reference": { "type": "PubMed", "id": "22139419", "url": "https://pubmed.ncbi.nlm.nih.gov/22139419" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1R4S7-1", "protein_name": "GTP:AMP phosphotransferase AK3, mitochondrial", "gene_name": "ak3", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5TYP7-1", "protein_name": "EH domain-containing protein 3", "gene_name": "ehd3", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M2B905-1", "protein_name": "Rho guanine nucleotide exchange factor 3", "gene_name": "arhgef3", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1R4S7", "url": "https://www.uniprot.org/uniprotkb/F1R4S7" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.22139419", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Characterization of the POU5F1 Homologue in Nile Tilapia: From Expression Pattern to Biological Activity.", "journal": "Stem Cells Dev.", "date": "2016", "authors": "Xiaohuan Huang, Yang Zhao, Linyan Liu, Zhenhua Fan, Linyan Zhou, Zhijian Wang, Ling Wei, Deshou Wang, Jing Wei", "reference": { "type": "PubMed", "id": "27473876", "url": "https://pubmed.ncbi.nlm.nih.gov/27473876" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1R4S7-1", "protein_name": "GTP:AMP phosphotransferase AK3, mitochondrial", "gene_name": "ak3", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1R4S7", "url": "https://www.uniprot.org/uniprotkb/F1R4S7" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.27473876", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Brd4 associates with mitotic chromosomes throughout early zebrafish embryogenesis.", "journal": "Dev. Dyn.", "date": "2008", "authors": "Toyama Reiko, Rebbert Martha L, Dey Anup, Ozato Keiko, Dawid Igor B", "reference": { "type": "PubMed", "id": "18498094", "url": "https://pubmed.ncbi.nlm.nih.gov/18498094" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1R5H6-1", "protein_name": "Bromodomain-containing protein 4", "gene_name": "brd4", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1R5H6", "url": "https://www.uniprot.org/uniprotkb/F1R5H6" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.18498094", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A human Tau expressing zebrafish model of progressive supranuclear palsy identifies Brd4 as a regulator of microglial synaptic elimination.", "journal": "Nature communications", "date": "2024-09-18", "authors": "Bai Qing, Shao Enhua, Ma Denglei, Jiao Binxuan, Scheetz Seth D, Hartnett-Scott Karen A, Ilin Vladimir A, Aizenman Elias, Kofler Julia, Burton Edward A", "reference": { "type": "PubMed", "id": "39294122", "url": "https://pubmed.ncbi.nlm.nih.gov/39294122" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1R5H6-1", "protein_name": "Bromodomain-containing protein 4", "gene_name": "brd4", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1R5H6", "url": "https://www.uniprot.org/uniprotkb/F1R5H6" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.39294122", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "nkx2.3 is responsible for posterior pharyngeal cartilage formation by inhibiting Fgf signaling.", "journal": "Heliyon", "date": "2023", "authors": "Liu Y., Wang F., Wang H., Yang S., Zhang T., Xu X., Guo J., Yin Z., Sun S., Bao Y.", "reference": { "type": "PubMed", "id": "38034615", "url": "https://pubmed.ncbi.nlm.nih.gov/38034615" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1R5S7-1", "protein_name": "Forkhead box protein D3", "gene_name": "foxd3", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A1D5NSV4-1", "protein_name": "Crestin", "gene_name": "crestin", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1R5S7", "url": "https://www.uniprot.org/uniprotkb/F1R5S7" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.38034615", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Mutations affecting development of the midline and general body shape during zebrafish embryogenesis.", "journal": "Development", "date": "1996", "authors": "Brand M, Heisenberg C P, Warga R M, Pelegri F, Karlstrom R O, Beuchle D, Picker A, Jiang Y J, Furutani-Seiki M, van Eeden F J, Granato M, Haffter P, Hammerschmidt M, Kane D A, Kelsh R N, Mullins M C, Odenthal J, N\u00fcsslein-Volhard C", "reference": { "type": "PubMed", "id": "9007235", "url": "https://pubmed.ncbi.nlm.nih.gov/9007235" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1R5S7-1", "protein_name": "Forkhead box protein D3", "gene_name": "foxd3", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1R5S7", "url": "https://www.uniprot.org/uniprotkb/F1R5S7" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.9007235", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "fork head domain genes in zebrafish.", "journal": "Dev. Genes Evol.", "date": "1998", "authors": "Odenthal J, N\u00fcsslein-Volhard C", "reference": { "type": "PubMed", "id": "9683740", "url": "https://pubmed.ncbi.nlm.nih.gov/9683740" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1R5S7-1", "protein_name": "Forkhead box protein D3", "gene_name": "foxd3", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "B0UXI2-1", "protein_name": "Forkhead box protein D2", "gene_name": "foxd2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QC30-1", "protein_name": "Forkhead box A sequence", "gene_name": "foxa", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1R5S7", "url": "https://www.uniprot.org/uniprotkb/F1R5S7" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.9683740", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Control of neural crest cell fate by the Wnt signalling pathway.", "journal": "Nature", "date": "1998", "authors": "Dorsky R I, Moon R T, Raible D W", "reference": { "type": "PubMed", "id": "9845073", "url": "https://pubmed.ncbi.nlm.nih.gov/9845073" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1R5S7-1", "protein_name": "Forkhead box protein D3", "gene_name": "foxd3", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1R5S7", "url": "https://www.uniprot.org/uniprotkb/F1R5S7" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.9845073", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Mutations in GDP-mannose pyrophosphorylase B cause congenital and limb-girdle muscular dystrophies associated with hypoglycosylation of alpha-dystroglycan.", "journal": "Am. J. Hum. Genet.", "date": "2013", "authors": "Carss KJ, Stevens E, Foley AR, Cirak S, Riemersma M, Torelli S, Hoischen A, Willer T, van Scherpenzeel M, Moore SA, Messina S, Bertini E, Bonnemann CG, Abdenur JE, Grosmann CM, Kesari A, Punetha J, Quinlivan R, Waddell LB, Young HK, Wraige E, Yau S, Brodd L, Feng L, Sewry C, MacArthur DG, North KN, Hoffman E, Stemple DL, Hurles ME, van Bokhoven H, Campbell KP, Lefeber DJ, Lin YY, Muntoni F", "reference": { "type": "PubMed", "id": "23768512", "url": "https://pubmed.ncbi.nlm.nih.gov/23768512" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q6DBU5-1", "protein_name": "Mannose-1-phosphate guanylyltransferase catalytic subunit beta", "gene_name": "gmppb", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q9Y5P6-1", "protein_name": "Mannose-1-phosphate guanylyltransferase catalytic subunit beta", "gene_name": "GMPPB", "tax_name": "Human" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q6DBU5", "url": "https://www.uniprot.org/uniprotkb/Q6DBU5" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "snv": [ { "evidence": [ { "id": "rs397509425", "database": "dbSNP", "url": "https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=rs397509425" }, { "id": "rs397509425", "database": "ExAC", "url": "https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=rs397509425" }, { "id": "rs397509425", "database": "TOPMed", "url": "https://www.ncbi.nlm.nih.gov/snp/rs397509425#frequency_tab" }, { "id": "rs397509425", "database": "gnomAD", "url": "http://gnomad.broadinstitute.org/awesome?query=rs397509425" }, { "id": "23768512", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23768512" } ], "glycoeffect": [], "start_pos": 185, "end_pos": 185, "sequence_org": "R", "sequence_mut": "C", "comment": "Germline mutation passed 1 filters: glycogene of type=glycogene, carbohydrate synthesis and metabolism/nucleotide synthesis.", "chr_id": "3", "chr_pos": "49722604", "ref_nt": "A", "alt_nt": "null", "minor_allelic_frequency": "", "site_lbl": "R185", "disease": [ { "disease_id": "DOID:0110294", "recommended_name": { "id": "DOID:0110294", "resource": "Disease Ontology", "url": "https://disease-ontology.org/term/DOID:0110294", "name": "autosomal recessive limb-girdle muscular dystrophy type 2T", "description": "An autosomal recessive limb-girdle muscular dystrophy that has_material_basis_in homozygous or compound heterozygous mutation in the GMPPB gene encoding the beta subunit of GDP-mannose pyrophosphorylase on chromosome 3p21." }, "synonyms": [ { "id": "DOID:0110294", "resource": "Disease Ontology", "url": "https://disease-ontology.org/term/DOID:0110294", "name": "LGMD2T", "description": "" }, { "id": "DOID:0110294", "resource": "Disease Ontology", "url": "https://disease-ontology.org/term/DOID:0110294", "name": "MDDGC14", "description": "" }, { "id": "DOID:0110294", "resource": "Disease Ontology", "url": "https://disease-ontology.org/term/DOID:0110294", "name": "muscular dystrophy limb-girdle type 2T", "description": "" }, { "id": "DOID:0110294", "resource": "Disease Ontology", "url": "https://disease-ontology.org/term/DOID:0110294", "name": "muscular dystrophy-dystroglycanopathy (limb-girdle) type C14", "description": "" }, { "id": "DOID:0110294", "resource": "Disease Ontology", "url": "https://disease-ontology.org/term/DOID:0110294", "name": "muscular dystrophy-dystroglycanopathy limb-girdle GMPPB-related", "description": "" }, { "id": "MONDO:0014142", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0014142", "name": "autosomal recessive limb-girdle muscular dystrophy type 2T", "description": "Autosomal recessive limb-girdle muscular dystrophy type 2T (LGMD2T) is a form of limb-girdle muscular dystrophy, that can present from birth to early childhood, characterized by hypotonia, microcephaly, mild proximal muscle weakness (leading to delayed walking and difficulty climbing stairs), mild intellectual disability and epilepsy. Additional manifestations reported in some patients include cataracts, nystagmus, cardiomyopathy, and respiratory insufficiency." }, { "id": "MONDO:0014142", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0014142", "name": "GMPPB autosomal recessive limb-girdle muscular dystrophy", "description": "" }, { "id": "MONDO:0014142", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0014142", "name": "LGMD-GMPPB related", "description": "" }, { "id": "MONDO:0014142", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0014142", "name": "LGMD2T", "description": "" }, { "id": "MONDO:0014142", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0014142", "name": "MDDGC14", "description": "" }, { "id": "MONDO:0014142", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0014142", "name": "autosomal recessive limb-girdle muscular dystrophy caused by mutation in GMPPB", "description": "" }, { "id": "MONDO:0014142", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0014142", "name": "limb-girdle muscular dystrophy type 2T", "description": "" }, { "id": "MONDO:0014142", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0014142", "name": "muscular dystrophy-dystroglycanopathy (limb-girdle), type C, 14", "description": "" }, { "id": "MIM:615352", "resource": "MIM", "url": "https://www.omim.org/entry/615352", "name": "Muscular dystrophy-dystroglycanopathy limb-girdle C14", "description": "Muscular dystrophy-dystroglycanopathy limb-girdle C14" } ], "unlinked_id_list": [], "evidence": [ { "id": "615352", "database": "MIM", "url": "https://www.omim.org/entry/615352" }, { "id": "GMPPB", "database": "Genomics England", "url": "https://panelapp.genomicsengland.co.uk/panels/25/gene/GMPPB/#!details" }, { "id": "0110294", "database": "AGR", "url": "https://www.alliancegenome.org/disease/DOID:0110294" } ] }, { "disease_id": "DOID:0111233", "recommended_name": { "id": "DOID:0111233", "resource": "Disease Ontology", "url": "https://disease-ontology.org/term/DOID:0111233", "name": "congenital muscular dystrophy-dystroglycanopathy type A14", "description": "A congenital muscular dystrophy-dystroglycanopathy type A that has_material_basis_in homozygous or compound heterozygous mutation in in GMPPB on 3p21.31." }, "synonyms": [ { "id": "DOID:0111233", "resource": "Disease Ontology", "url": "https://disease-ontology.org/term/DOID:0111233", "name": "Walker-Warburg syndrome or muscle-eye-brain disease GMPPB-related", "description": "" }, { "id": "DOID:0111233", "resource": "Disease Ontology", "url": "https://disease-ontology.org/term/DOID:0111233", "name": "MDDGA14", "description": "" }, { "id": "DOID:0111233", "resource": "Disease Ontology", "url": "https://disease-ontology.org/term/DOID:0111233", "name": "congenital muscular dystrophy-dystroglycanopathy with brain and eye anomalies type A14", "description": "" }, { "id": "MONDO:0014140", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0014140", "name": "muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A14", "description": "" }, { "id": "MONDO:0014140", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0014140", "name": "muscle-eye-brain-GMPPB related", "description": "" }, { "id": "MONDO:0014140", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0014140", "name": "MDDGA14", "description": "" }, { "id": "MONDO:0014140", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0014140", "name": "muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A, 14", "description": "" }, { "id": "MIM:615350", "resource": "MIM", "url": "https://www.omim.org/entry/615350", "name": "Muscular dystrophy-dystroglycanopathy congenital with brain and eye anomalies A14", "description": "Muscular dystrophy-dystroglycanopathy congenital with brain and eye anomalies A14" } ], "unlinked_id_list": [], "evidence": [ { "id": "0014140", "database": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0014140" }, { "id": "615350", "database": "MIM", "url": "https://www.omim.org/entry/615350" }, { "id": "GMPPB", "database": "Genomics England", "url": "https://panelapp.genomicsengland.co.uk/panels/25/gene/GMPPB/#!details" }, { "id": "0111233", "database": "AGR", "url": "https://www.alliancegenome.org/disease/DOID:0111233" } ] }, { "disease_id": "DOID:0112377", "recommended_name": { "id": "DOID:0112377", "resource": "Disease Ontology", "url": "https://disease-ontology.org/term/DOID:0112377", "name": "muscular dystrophy-dystroglycanopathy type B14", "description": "A muscular dystrophy-dystroglycanopathy type B that has_material_basis_in homozygous or compound heterozygous mutation in the GMPPB gene on chromosome 3p21.31." }, "synonyms": [ { "id": "DOID:0112377", "resource": "Disease Ontology", "url": "https://disease-ontology.org/term/DOID:0112377", "name": "MDDGB14", "description": "" }, { "id": "DOID:0112377", "resource": "Disease Ontology", "url": "https://disease-ontology.org/term/DOID:0112377", "name": "congenital muscular dystrophy GMPPB-related", "description": "" }, { "id": "MONDO:0014141", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0014141", "name": "muscular dystrophy-dystroglycanopathy (congenital with intellectual disability), type B14", "description": "" }, { "id": "MONDO:0014141", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0014141", "name": "congenital muscular dystrophy-GMPPB related", "description": "" }, { "id": "MONDO:0014141", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0014141", "name": "MDDGB14", "description": "" }, { "id": "MONDO:0014141", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0014141", "name": "muscular dystrophy-dystroglycanopathy (congenital with intellectual disability), type B, 14", "description": "" }, { "id": "MONDO:0014141", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0014141", "name": "muscular dystrophy-dystroglycanopathy (congenital with mental retardation), type B, 14", "description": "" }, { "id": "MIM:615351", "resource": "MIM", "url": "https://www.omim.org/entry/615351", "name": "Muscular dystrophy-dystroglycanopathy congenital with impaired intellectual development B14", "description": "Muscular dystrophy-dystroglycanopathy congenital with impaired intellectual development B14" } ], "unlinked_id_list": [], "evidence": [ { "id": "615351", "database": "MIM", "url": "https://www.omim.org/entry/615351" }, { "id": "GMPPB", "database": "Genomics England", "url": "https://panelapp.genomicsengland.co.uk/panels/25/gene/GMPPB/#!details" }, { "id": "0112377", "database": "AGR", "url": "https://www.alliancegenome.org/disease/DOID:0112377" } ] } ], "keywords": [ "ebi", "germline", "disease" ], "filter_code": "010000000000000000000.00000000000000.000000000001000000.00001.11.000.000", "uniprot_canonical_ac": "Q9Y5P6-1" }, { "evidence": [ { "id": "rs397509424", "database": "dbSNP", "url": "https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=rs397509424" }, { "id": "rs397509424", "database": "ENSEMBL", "url": "https://www.ensembl.org/id/rs397509424" }, { "id": "23768512", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23768512" } ], "glycoeffect": [], "start_pos": 22, "end_pos": 22, "sequence_org": "P", "sequence_mut": "S", "comment": "Germline mutation passed 1 filters: glycogene of type=glycogene, carbohydrate synthesis and metabolism/nucleotide synthesis.", "chr_id": "3", "chr_pos": "49723663", "ref_nt": "A", "alt_nt": "null", "minor_allelic_frequency": "", "site_lbl": "P22", "disease": [ { "disease_id": "DOID:0110294", "recommended_name": { "id": "DOID:0110294", "resource": "Disease Ontology", "url": "https://disease-ontology.org/term/DOID:0110294", "name": "autosomal recessive limb-girdle muscular dystrophy type 2T", "description": "An autosomal recessive limb-girdle muscular dystrophy that has_material_basis_in homozygous or compound heterozygous mutation in the GMPPB gene encoding the beta subunit of GDP-mannose pyrophosphorylase on chromosome 3p21." }, "synonyms": [ { "id": "DOID:0110294", "resource": "Disease Ontology", "url": "https://disease-ontology.org/term/DOID:0110294", "name": "LGMD2T", "description": "" }, { "id": "DOID:0110294", "resource": "Disease Ontology", "url": "https://disease-ontology.org/term/DOID:0110294", "name": "MDDGC14", "description": "" }, { "id": "DOID:0110294", "resource": "Disease Ontology", "url": "https://disease-ontology.org/term/DOID:0110294", "name": "muscular dystrophy limb-girdle type 2T", "description": "" }, { "id": "DOID:0110294", "resource": "Disease Ontology", "url": "https://disease-ontology.org/term/DOID:0110294", "name": "muscular dystrophy-dystroglycanopathy (limb-girdle) type C14", "description": "" }, { "id": "DOID:0110294", "resource": "Disease Ontology", "url": "https://disease-ontology.org/term/DOID:0110294", "name": "muscular dystrophy-dystroglycanopathy limb-girdle GMPPB-related", "description": "" }, { "id": "MONDO:0014142", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0014142", "name": "autosomal recessive limb-girdle muscular dystrophy type 2T", "description": "Autosomal recessive limb-girdle muscular dystrophy type 2T (LGMD2T) is a form of limb-girdle muscular dystrophy, that can present from birth to early childhood, characterized by hypotonia, microcephaly, mild proximal muscle weakness (leading to delayed walking and difficulty climbing stairs), mild intellectual disability and epilepsy. Additional manifestations reported in some patients include cataracts, nystagmus, cardiomyopathy, and respiratory insufficiency." }, { "id": "MONDO:0014142", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0014142", "name": "GMPPB autosomal recessive limb-girdle muscular dystrophy", "description": "" }, { "id": "MONDO:0014142", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0014142", "name": "LGMD-GMPPB related", "description": "" }, { "id": "MONDO:0014142", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0014142", "name": "LGMD2T", "description": "" }, { "id": "MONDO:0014142", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0014142", "name": "MDDGC14", "description": "" }, { "id": "MONDO:0014142", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0014142", "name": "autosomal recessive limb-girdle muscular dystrophy caused by mutation in GMPPB", "description": "" }, { "id": "MONDO:0014142", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0014142", "name": "limb-girdle muscular dystrophy type 2T", "description": "" }, { "id": "MONDO:0014142", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0014142", "name": "muscular dystrophy-dystroglycanopathy (limb-girdle), type C, 14", "description": "" }, { "id": "MIM:615352", "resource": "MIM", "url": "https://www.omim.org/entry/615352", "name": "Muscular dystrophy-dystroglycanopathy limb-girdle C14", "description": "Muscular dystrophy-dystroglycanopathy limb-girdle C14" } ], "unlinked_id_list": [], "evidence": [ { "id": "615352", "database": "MIM", "url": "https://www.omim.org/entry/615352" }, { "id": "GMPPB", "database": "Genomics England", "url": "https://panelapp.genomicsengland.co.uk/panels/25/gene/GMPPB/#!details" }, { "id": "0110294", "database": "AGR", "url": "https://www.alliancegenome.org/disease/DOID:0110294" } ] } ], "keywords": [ "ebi", "germline", "disease" ], "filter_code": "000000000000001000000.00000000000000.000000000001000000.00001.10.000.000", "uniprot_canonical_ac": "Q9Y5P6-1" }, { "evidence": [ { "id": "rs142336618", "database": "dbSNP", "url": "https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=rs142336618" }, { "id": "rs142336618", "database": "ExAC", "url": "https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=rs142336618" }, { "id": "rs142336618", "database": "TOPMed", "url": "https://www.ncbi.nlm.nih.gov/snp/rs142336618#frequency_tab" }, { "id": "rs142336618", "database": "gnomAD", "url": "http://gnomad.broadinstitute.org/awesome?query=rs142336618" }, { "id": "23768512", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23768512" }, { "id": "26133662", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/26133662" } ], "glycoeffect": [], "start_pos": 27, "end_pos": 27, "sequence_org": "D", "sequence_mut": "H", "comment": "Germline mutation passed 1 filters: glycogene of type=glycogene, carbohydrate synthesis and metabolism/nucleotide synthesis.", "chr_id": "3", "chr_pos": "49723648", "ref_nt": "G", "alt_nt": "null", "minor_allelic_frequency": "", "site_lbl": "D27", "disease": [ { "disease_id": "DOID:0110294", "recommended_name": { "id": "DOID:0110294", "resource": "Disease Ontology", "url": "https://disease-ontology.org/term/DOID:0110294", "name": "autosomal recessive limb-girdle muscular dystrophy type 2T", "description": "An autosomal recessive limb-girdle muscular dystrophy that has_material_basis_in homozygous or compound heterozygous mutation in the GMPPB gene encoding the beta subunit of GDP-mannose pyrophosphorylase on chromosome 3p21." }, "synonyms": [ { "id": "DOID:0110294", "resource": "Disease Ontology", "url": "https://disease-ontology.org/term/DOID:0110294", "name": "LGMD2T", "description": "" }, { "id": "DOID:0110294", "resource": "Disease Ontology", "url": "https://disease-ontology.org/term/DOID:0110294", "name": "MDDGC14", "description": "" }, { "id": "DOID:0110294", "resource": "Disease Ontology", "url": "https://disease-ontology.org/term/DOID:0110294", "name": "muscular dystrophy limb-girdle type 2T", "description": "" }, { "id": "DOID:0110294", "resource": "Disease Ontology", "url": "https://disease-ontology.org/term/DOID:0110294", "name": "muscular dystrophy-dystroglycanopathy (limb-girdle) type C14", "description": "" }, { "id": "DOID:0110294", "resource": "Disease Ontology", "url": "https://disease-ontology.org/term/DOID:0110294", "name": "muscular dystrophy-dystroglycanopathy limb-girdle GMPPB-related", "description": "" }, { "id": "MONDO:0014142", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0014142", "name": "autosomal recessive limb-girdle muscular dystrophy type 2T", "description": "Autosomal recessive limb-girdle muscular dystrophy type 2T (LGMD2T) is a form of limb-girdle muscular dystrophy, that can present from birth to early childhood, characterized by hypotonia, microcephaly, mild proximal muscle weakness (leading to delayed walking and difficulty climbing stairs), mild intellectual disability and epilepsy. Additional manifestations reported in some patients include cataracts, nystagmus, cardiomyopathy, and respiratory insufficiency." }, { "id": "MONDO:0014142", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0014142", "name": "GMPPB autosomal recessive limb-girdle muscular dystrophy", "description": "" }, { "id": "MONDO:0014142", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0014142", "name": "LGMD-GMPPB related", "description": "" }, { "id": "MONDO:0014142", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0014142", "name": "LGMD2T", "description": "" }, { "id": "MONDO:0014142", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0014142", "name": "MDDGC14", "description": "" }, { "id": "MONDO:0014142", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0014142", "name": "autosomal recessive limb-girdle muscular dystrophy caused by mutation in GMPPB", "description": "" }, { "id": "MONDO:0014142", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0014142", "name": "limb-girdle muscular dystrophy type 2T", "description": "" }, { "id": "MONDO:0014142", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0014142", "name": "muscular dystrophy-dystroglycanopathy (limb-girdle), type C, 14", "description": "" }, { "id": "MIM:615352", "resource": "MIM", "url": "https://www.omim.org/entry/615352", "name": "Muscular dystrophy-dystroglycanopathy limb-girdle C14", "description": "Muscular dystrophy-dystroglycanopathy limb-girdle C14" } ], "unlinked_id_list": [], "evidence": [ { "id": "615352", "database": "MIM", "url": "https://www.omim.org/entry/615352" }, { "id": "GMPPB", "database": "Genomics England", "url": "https://panelapp.genomicsengland.co.uk/panels/25/gene/GMPPB/#!details" }, { "id": "0110294", "database": "AGR", "url": "https://www.alliancegenome.org/disease/DOID:0110294" } ] }, { "disease_id": "DOID:0111233", "recommended_name": { "id": "DOID:0111233", "resource": "Disease Ontology", "url": "https://disease-ontology.org/term/DOID:0111233", "name": "congenital muscular dystrophy-dystroglycanopathy type A14", "description": "A congenital muscular dystrophy-dystroglycanopathy type A that has_material_basis_in homozygous or compound heterozygous mutation in in GMPPB on 3p21.31." }, "synonyms": [ { "id": "DOID:0111233", "resource": "Disease Ontology", "url": "https://disease-ontology.org/term/DOID:0111233", "name": "Walker-Warburg syndrome or muscle-eye-brain disease GMPPB-related", "description": "" }, { "id": "DOID:0111233", "resource": "Disease Ontology", "url": "https://disease-ontology.org/term/DOID:0111233", "name": "MDDGA14", "description": "" }, { "id": "DOID:0111233", "resource": "Disease Ontology", "url": "https://disease-ontology.org/term/DOID:0111233", "name": "congenital muscular dystrophy-dystroglycanopathy with brain and eye anomalies type A14", "description": "" }, { "id": "MONDO:0014140", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0014140", "name": "muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A14", "description": "" }, { "id": "MONDO:0014140", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0014140", "name": "muscle-eye-brain-GMPPB related", "description": "" }, { "id": "MONDO:0014140", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0014140", "name": "MDDGA14", "description": "" }, { "id": "MONDO:0014140", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0014140", "name": "muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A, 14", "description": "" }, { "id": "MIM:615350", "resource": "MIM", "url": "https://www.omim.org/entry/615350", "name": "Muscular dystrophy-dystroglycanopathy congenital with brain and eye anomalies A14", "description": "Muscular dystrophy-dystroglycanopathy congenital with brain and eye anomalies A14" } ], "unlinked_id_list": [], "evidence": [ { "id": "0014140", "database": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0014140" }, { "id": "615350", "database": "MIM", "url": "https://www.omim.org/entry/615350" }, { "id": "GMPPB", "database": "Genomics England", "url": "https://panelapp.genomicsengland.co.uk/panels/25/gene/GMPPB/#!details" }, { "id": "0111233", "database": "AGR", "url": "https://www.alliancegenome.org/disease/DOID:0111233" } ] }, { "disease_id": "DOID:0112377", "recommended_name": { "id": "DOID:0112377", "resource": "Disease Ontology", "url": "https://disease-ontology.org/term/DOID:0112377", "name": "muscular dystrophy-dystroglycanopathy type B14", "description": "A muscular dystrophy-dystroglycanopathy type B that has_material_basis_in homozygous or compound heterozygous mutation in the GMPPB gene on chromosome 3p21.31." }, "synonyms": [ { "id": "DOID:0112377", "resource": "Disease Ontology", "url": "https://disease-ontology.org/term/DOID:0112377", "name": "MDDGB14", "description": "" }, { "id": "DOID:0112377", "resource": "Disease Ontology", "url": "https://disease-ontology.org/term/DOID:0112377", "name": "congenital muscular dystrophy GMPPB-related", "description": "" }, { "id": "MONDO:0014141", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0014141", "name": "muscular dystrophy-dystroglycanopathy (congenital with intellectual disability), type B14", "description": "" }, { "id": "MONDO:0014141", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0014141", "name": "congenital muscular dystrophy-GMPPB related", "description": "" }, { "id": "MONDO:0014141", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0014141", "name": "MDDGB14", "description": "" }, { "id": "MONDO:0014141", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0014141", "name": "muscular dystrophy-dystroglycanopathy (congenital with intellectual disability), type B, 14", "description": "" }, { "id": "MONDO:0014141", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0014141", "name": "muscular dystrophy-dystroglycanopathy (congenital with mental retardation), type B, 14", "description": "" }, { "id": "MIM:615351", "resource": "MIM", "url": "https://www.omim.org/entry/615351", "name": "Muscular dystrophy-dystroglycanopathy congenital with impaired intellectual development B14", "description": "Muscular dystrophy-dystroglycanopathy congenital with impaired intellectual development B14" } ], "unlinked_id_list": [], "evidence": [ { "id": "615351", "database": "MIM", "url": "https://www.omim.org/entry/615351" }, { "id": "GMPPB", "database": "Genomics England", "url": "https://panelapp.genomicsengland.co.uk/panels/25/gene/GMPPB/#!details" }, { "id": "0112377", "database": "AGR", "url": "https://www.alliancegenome.org/disease/DOID:0112377" } ] } ], "keywords": [ "ebi", "germline", "disease" ], "filter_code": "000100000000000000000.00000000000000.000000000001000000.00001.11.000.000", "uniprot_canonical_ac": "Q9Y5P6-1" }, { "evidence": [ { "id": "rs202160208", "database": "dbSNP", "url": "https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=rs202160208" }, { "id": "rs202160208", "database": "ExAC", "url": "https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=rs202160208" }, { "id": "rs202160208", "database": "TOPMed", "url": "https://www.ncbi.nlm.nih.gov/snp/rs202160208#frequency_tab" }, { "id": "rs202160208", "database": "gnomAD", "url": "http://gnomad.broadinstitute.org/awesome?query=rs202160208" }, { "id": "23768512", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23768512" } ], "glycoeffect": [], "start_pos": 287, "end_pos": 287, "sequence_org": "R", "sequence_mut": "Q", "comment": "Germline mutation passed 1 filters: glycogene of type=glycogene, carbohydrate synthesis and metabolism/nucleotide synthesis.", "chr_id": "3", "chr_pos": "49722056", "ref_nt": "T", "alt_nt": "null", "minor_allelic_frequency": "", "site_lbl": "R287", "disease": [ { "disease_id": "DOID:0110294", "recommended_name": { "id": "DOID:0110294", "resource": "Disease Ontology", "url": "https://disease-ontology.org/term/DOID:0110294", "name": "autosomal recessive limb-girdle muscular dystrophy type 2T", "description": "An autosomal recessive limb-girdle muscular dystrophy that has_material_basis_in homozygous or compound heterozygous mutation in the GMPPB gene encoding the beta subunit of GDP-mannose pyrophosphorylase on chromosome 3p21." }, "synonyms": [ { "id": "DOID:0110294", "resource": "Disease Ontology", "url": "https://disease-ontology.org/term/DOID:0110294", "name": "LGMD2T", "description": "" }, { "id": "DOID:0110294", "resource": "Disease Ontology", "url": "https://disease-ontology.org/term/DOID:0110294", "name": "MDDGC14", "description": "" }, { "id": "DOID:0110294", "resource": "Disease Ontology", "url": "https://disease-ontology.org/term/DOID:0110294", "name": "muscular dystrophy limb-girdle type 2T", "description": "" }, { "id": "DOID:0110294", "resource": "Disease Ontology", "url": "https://disease-ontology.org/term/DOID:0110294", "name": "muscular dystrophy-dystroglycanopathy (limb-girdle) type C14", "description": "" }, { "id": "DOID:0110294", "resource": "Disease Ontology", "url": "https://disease-ontology.org/term/DOID:0110294", "name": "muscular dystrophy-dystroglycanopathy limb-girdle GMPPB-related", "description": "" }, { "id": "MONDO:0014142", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0014142", "name": "autosomal recessive limb-girdle muscular dystrophy type 2T", "description": "Autosomal recessive limb-girdle muscular dystrophy type 2T (LGMD2T) is a form of limb-girdle muscular dystrophy, that can present from birth to early childhood, characterized by hypotonia, microcephaly, mild proximal muscle weakness (leading to delayed walking and difficulty climbing stairs), mild intellectual disability and epilepsy. Additional manifestations reported in some patients include cataracts, nystagmus, cardiomyopathy, and respiratory insufficiency." }, { "id": "MONDO:0014142", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0014142", "name": "GMPPB autosomal recessive limb-girdle muscular dystrophy", "description": "" }, { "id": "MONDO:0014142", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0014142", "name": "LGMD-GMPPB related", "description": "" }, { "id": "MONDO:0014142", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0014142", "name": "LGMD2T", "description": "" }, { "id": "MONDO:0014142", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0014142", "name": "MDDGC14", "description": "" }, { "id": "MONDO:0014142", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0014142", "name": "autosomal recessive limb-girdle muscular dystrophy caused by mutation in GMPPB", "description": "" }, { "id": "MONDO:0014142", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0014142", "name": "limb-girdle muscular dystrophy type 2T", "description": "" }, { "id": "MONDO:0014142", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0014142", "name": "muscular dystrophy-dystroglycanopathy (limb-girdle), type C, 14", "description": "" }, { "id": "MIM:615352", "resource": "MIM", "url": "https://www.omim.org/entry/615352", "name": "Muscular dystrophy-dystroglycanopathy limb-girdle C14", "description": "Muscular dystrophy-dystroglycanopathy limb-girdle C14" } ], "unlinked_id_list": [], "evidence": [ { "id": "615352", "database": "MIM", "url": "https://www.omim.org/entry/615352" }, { "id": "GMPPB", "database": "Genomics England", "url": "https://panelapp.genomicsengland.co.uk/panels/25/gene/GMPPB/#!details" }, { "id": "0110294", "database": "AGR", "url": "https://www.alliancegenome.org/disease/DOID:0110294" } ] }, { "disease_id": "DOID:0111233", "recommended_name": { "id": "DOID:0111233", "resource": "Disease Ontology", "url": "https://disease-ontology.org/term/DOID:0111233", "name": "congenital muscular dystrophy-dystroglycanopathy type A14", "description": "A congenital muscular dystrophy-dystroglycanopathy type A that has_material_basis_in homozygous or compound heterozygous mutation in in GMPPB on 3p21.31." }, "synonyms": [ { "id": "DOID:0111233", "resource": "Disease Ontology", "url": "https://disease-ontology.org/term/DOID:0111233", "name": "Walker-Warburg syndrome or muscle-eye-brain disease GMPPB-related", "description": "" }, { "id": "DOID:0111233", "resource": "Disease Ontology", "url": "https://disease-ontology.org/term/DOID:0111233", "name": "MDDGA14", "description": "" }, { "id": "DOID:0111233", "resource": "Disease Ontology", "url": "https://disease-ontology.org/term/DOID:0111233", "name": "congenital muscular dystrophy-dystroglycanopathy with brain and eye anomalies type A14", "description": "" }, { "id": "MONDO:0014140", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0014140", "name": "muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A14", "description": "" }, { "id": "MONDO:0014140", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0014140", "name": "muscle-eye-brain-GMPPB related", "description": "" }, { "id": "MONDO:0014140", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0014140", "name": "MDDGA14", "description": "" }, { "id": "MONDO:0014140", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0014140", "name": "muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A, 14", "description": "" }, { "id": "MIM:615350", "resource": "MIM", "url": "https://www.omim.org/entry/615350", "name": "Muscular dystrophy-dystroglycanopathy congenital with brain and eye anomalies A14", "description": "Muscular dystrophy-dystroglycanopathy congenital with brain and eye anomalies A14" } ], "unlinked_id_list": [], "evidence": [ { "id": "0014140", "database": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0014140" }, { "id": "615350", "database": "MIM", "url": "https://www.omim.org/entry/615350" }, { "id": "GMPPB", "database": "Genomics England", "url": "https://panelapp.genomicsengland.co.uk/panels/25/gene/GMPPB/#!details" }, { "id": "0111233", "database": "AGR", "url": "https://www.alliancegenome.org/disease/DOID:0111233" } ] }, { "disease_id": "DOID:0112377", "recommended_name": { "id": "DOID:0112377", "resource": "Disease Ontology", "url": "https://disease-ontology.org/term/DOID:0112377", "name": "muscular dystrophy-dystroglycanopathy type B14", "description": "A muscular dystrophy-dystroglycanopathy type B that has_material_basis_in homozygous or compound heterozygous mutation in the GMPPB gene on chromosome 3p21.31." }, "synonyms": [ { "id": "DOID:0112377", "resource": "Disease Ontology", "url": "https://disease-ontology.org/term/DOID:0112377", "name": "MDDGB14", "description": "" }, { "id": "DOID:0112377", "resource": "Disease Ontology", "url": "https://disease-ontology.org/term/DOID:0112377", "name": "congenital muscular dystrophy GMPPB-related", "description": "" }, { "id": "MONDO:0014141", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0014141", "name": "muscular dystrophy-dystroglycanopathy (congenital with intellectual disability), type B14", "description": "" }, { "id": "MONDO:0014141", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0014141", "name": "congenital muscular dystrophy-GMPPB related", "description": "" }, { "id": "MONDO:0014141", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0014141", "name": "MDDGB14", "description": "" }, { "id": "MONDO:0014141", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0014141", "name": "muscular dystrophy-dystroglycanopathy (congenital with intellectual disability), type B, 14", "description": "" }, { "id": "MONDO:0014141", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0014141", "name": "muscular dystrophy-dystroglycanopathy (congenital with mental retardation), type B, 14", "description": "" }, { "id": "MIM:615351", "resource": "MIM", "url": "https://www.omim.org/entry/615351", "name": "Muscular dystrophy-dystroglycanopathy congenital with impaired intellectual development B14", "description": "Muscular dystrophy-dystroglycanopathy congenital with impaired intellectual development B14" } ], "unlinked_id_list": [], "evidence": [ { "id": "615351", "database": "MIM", "url": "https://www.omim.org/entry/615351" }, { "id": "GMPPB", "database": "Genomics England", "url": "https://panelapp.genomicsengland.co.uk/panels/25/gene/GMPPB/#!details" }, { "id": "0112377", "database": "AGR", "url": "https://www.alliancegenome.org/disease/DOID:0112377" } ] } ], "keywords": [ "ebi", "germline", "disease" ], "filter_code": "010000000000000000000.00000000000000.000000000001000000.00101.10.000.000", "uniprot_canonical_ac": "Q9Y5P6-1" }, { "evidence": [ { "id": "rs397509426", "database": "dbSNP", "url": "https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=rs397509426" }, { "id": "rs397509426", "database": "ExAC", "url": "https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=rs397509426" }, { "id": "rs397509426", "database": "TOPMed", "url": "https://www.ncbi.nlm.nih.gov/snp/rs397509426#frequency_tab" }, { "id": "rs397509426", "database": "gnomAD", "url": "http://gnomad.broadinstitute.org/awesome?query=rs397509426" }, { "id": "19901254", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/19901254" }, { "id": "23768512", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23768512" }, { "id": "rs397509426", "database": "COSMIC", "url": "https://www.ensembl.org/homo_sapiens/Variation/Explore?v=rs397509426" } ], "glycoeffect": [], "start_pos": 32, "end_pos": 32, "sequence_org": "P", "sequence_mut": "L", "comment": "Somatic mutation passed 1 filters: glycogene of type=glycogene, carbohydrate synthesis and metabolism/nucleotide synthesis.", "chr_id": "3", "chr_pos": "49723632", "ref_nt": "A", "alt_nt": "null", "minor_allelic_frequency": "", "site_lbl": "P32", "disease": [ { "disease_id": "DOID:0110294", "recommended_name": { "id": "DOID:0110294", "resource": "Disease Ontology", "url": "https://disease-ontology.org/term/DOID:0110294", "name": "autosomal recessive limb-girdle muscular dystrophy type 2T", "description": "An autosomal recessive limb-girdle muscular dystrophy that has_material_basis_in homozygous or compound heterozygous mutation in the GMPPB gene encoding the beta subunit of GDP-mannose pyrophosphorylase on chromosome 3p21." }, "synonyms": [ { "id": "DOID:0110294", "resource": "Disease Ontology", "url": "https://disease-ontology.org/term/DOID:0110294", "name": "LGMD2T", "description": "" }, { "id": "DOID:0110294", "resource": "Disease Ontology", "url": "https://disease-ontology.org/term/DOID:0110294", "name": "MDDGC14", "description": "" }, { "id": "DOID:0110294", "resource": "Disease Ontology", "url": "https://disease-ontology.org/term/DOID:0110294", "name": "muscular dystrophy limb-girdle type 2T", "description": "" }, { "id": "DOID:0110294", "resource": "Disease Ontology", "url": "https://disease-ontology.org/term/DOID:0110294", "name": "muscular dystrophy-dystroglycanopathy (limb-girdle) type C14", "description": "" }, { "id": "DOID:0110294", "resource": "Disease Ontology", "url": "https://disease-ontology.org/term/DOID:0110294", "name": "muscular dystrophy-dystroglycanopathy limb-girdle GMPPB-related", "description": "" }, { "id": "MONDO:0014142", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0014142", "name": "autosomal recessive limb-girdle muscular dystrophy type 2T", "description": "Autosomal recessive limb-girdle muscular dystrophy type 2T (LGMD2T) is a form of limb-girdle muscular dystrophy, that can present from birth to early childhood, characterized by hypotonia, microcephaly, mild proximal muscle weakness (leading to delayed walking and difficulty climbing stairs), mild intellectual disability and epilepsy. Additional manifestations reported in some patients include cataracts, nystagmus, cardiomyopathy, and respiratory insufficiency." }, { "id": "MONDO:0014142", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0014142", "name": "GMPPB autosomal recessive limb-girdle muscular dystrophy", "description": "" }, { "id": "MONDO:0014142", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0014142", "name": "LGMD-GMPPB related", "description": "" }, { "id": "MONDO:0014142", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0014142", "name": "LGMD2T", "description": "" }, { "id": "MONDO:0014142", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0014142", "name": "MDDGC14", "description": "" }, { "id": "MONDO:0014142", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0014142", "name": "autosomal recessive limb-girdle muscular dystrophy caused by mutation in GMPPB", "description": "" }, { "id": "MONDO:0014142", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0014142", "name": "limb-girdle muscular dystrophy type 2T", "description": "" }, { "id": "MONDO:0014142", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0014142", "name": "muscular dystrophy-dystroglycanopathy (limb-girdle), type C, 14", "description": "" }, { "id": "MIM:615352", "resource": "MIM", "url": "https://www.omim.org/entry/615352", "name": "Muscular dystrophy-dystroglycanopathy limb-girdle C14", "description": "Muscular dystrophy-dystroglycanopathy limb-girdle C14" } ], "unlinked_id_list": [], "evidence": [ { "id": "615352", "database": "MIM", "url": "https://www.omim.org/entry/615352" }, { "id": "GMPPB", "database": "Genomics England", "url": "https://panelapp.genomicsengland.co.uk/panels/25/gene/GMPPB/#!details" }, { "id": "0110294", "database": "AGR", "url": "https://www.alliancegenome.org/disease/DOID:0110294" } ] }, { "disease_id": "DOID:0111233", "recommended_name": { "id": "DOID:0111233", "resource": "Disease Ontology", "url": "https://disease-ontology.org/term/DOID:0111233", "name": "congenital muscular dystrophy-dystroglycanopathy type A14", "description": "A congenital muscular dystrophy-dystroglycanopathy type A that has_material_basis_in homozygous or compound heterozygous mutation in in GMPPB on 3p21.31." }, "synonyms": [ { "id": "DOID:0111233", "resource": "Disease Ontology", "url": "https://disease-ontology.org/term/DOID:0111233", "name": "Walker-Warburg syndrome or muscle-eye-brain disease GMPPB-related", "description": "" }, { "id": "DOID:0111233", "resource": "Disease Ontology", "url": "https://disease-ontology.org/term/DOID:0111233", "name": "MDDGA14", "description": "" }, { "id": "DOID:0111233", "resource": "Disease Ontology", "url": "https://disease-ontology.org/term/DOID:0111233", "name": "congenital muscular dystrophy-dystroglycanopathy with brain and eye anomalies type A14", "description": "" }, { "id": "MONDO:0014140", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0014140", "name": "muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A14", "description": "" }, { "id": "MONDO:0014140", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0014140", "name": "muscle-eye-brain-GMPPB related", "description": "" }, { "id": "MONDO:0014140", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0014140", "name": "MDDGA14", "description": "" }, { "id": "MONDO:0014140", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0014140", "name": "muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A, 14", "description": "" }, { "id": "MIM:615350", "resource": "MIM", "url": "https://www.omim.org/entry/615350", "name": "Muscular dystrophy-dystroglycanopathy congenital with brain and eye anomalies A14", "description": "Muscular dystrophy-dystroglycanopathy congenital with brain and eye anomalies A14" } ], "unlinked_id_list": [], "evidence": [ { "id": "0014140", "database": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0014140" }, { "id": "615350", "database": "MIM", "url": "https://www.omim.org/entry/615350" }, { "id": "GMPPB", "database": "Genomics England", "url": "https://panelapp.genomicsengland.co.uk/panels/25/gene/GMPPB/#!details" }, { "id": "0111233", "database": "AGR", "url": "https://www.alliancegenome.org/disease/DOID:0111233" } ] }, { "disease_id": "DOID:0112377", "recommended_name": { "id": "DOID:0112377", "resource": "Disease Ontology", "url": "https://disease-ontology.org/term/DOID:0112377", "name": "muscular dystrophy-dystroglycanopathy type B14", "description": "A muscular dystrophy-dystroglycanopathy type B that has_material_basis_in homozygous or compound heterozygous mutation in the GMPPB gene on chromosome 3p21.31." }, "synonyms": [ { "id": "DOID:0112377", "resource": "Disease Ontology", "url": "https://disease-ontology.org/term/DOID:0112377", "name": "MDDGB14", "description": "" }, { "id": "DOID:0112377", "resource": "Disease Ontology", "url": "https://disease-ontology.org/term/DOID:0112377", "name": "congenital muscular dystrophy GMPPB-related", "description": "" }, { "id": "MONDO:0014141", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0014141", "name": "muscular dystrophy-dystroglycanopathy (congenital with intellectual disability), type B14", "description": "" }, { "id": "MONDO:0014141", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0014141", "name": "congenital muscular dystrophy-GMPPB related", "description": "" }, { "id": "MONDO:0014141", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0014141", "name": "MDDGB14", "description": "" }, { "id": "MONDO:0014141", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0014141", "name": "muscular dystrophy-dystroglycanopathy (congenital with intellectual disability), type B, 14", "description": "" }, { "id": "MONDO:0014141", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0014141", "name": "muscular dystrophy-dystroglycanopathy (congenital with mental retardation), type B, 14", "description": "" }, { "id": "MIM:615351", "resource": "MIM", "url": "https://www.omim.org/entry/615351", "name": "Muscular dystrophy-dystroglycanopathy congenital with impaired intellectual development B14", "description": "Muscular dystrophy-dystroglycanopathy congenital with impaired intellectual development B14" } ], "unlinked_id_list": [], "evidence": [ { "id": "615351", "database": "MIM", "url": "https://www.omim.org/entry/615351" }, { "id": "GMPPB", "database": "Genomics England", "url": "https://panelapp.genomicsengland.co.uk/panels/25/gene/GMPPB/#!details" }, { "id": "0112377", "database": "AGR", "url": "https://www.alliancegenome.org/disease/DOID:0112377" } ] } ], "keywords": [ "ebi", "somatic", "disease" ], "filter_code": "000000000000001000000.00000000000000.000000000001000000.00001.11.000.100", "uniprot_canonical_ac": "Q9Y5P6-1" }, { "evidence": [ { "id": "rs199922550", "database": "dbSNP", "url": "https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=rs199922550" }, { "id": "rs199922550", "database": "ExAC", "url": "https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=rs199922550" }, { "id": "rs199922550", "database": "TOPMed", "url": "https://www.ncbi.nlm.nih.gov/snp/rs199922550#frequency_tab" }, { "id": "rs199922550", "database": "gnomAD", "url": "http://gnomad.broadinstitute.org/awesome?query=rs199922550" }, { "id": "23768512", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23768512" }, { "id": "rs199922550", "database": "COSMIC", "url": "https://www.ensembl.org/homo_sapiens/Variation/Explore?v=rs199922550" } ], "glycoeffect": [], "start_pos": 330, "end_pos": 330, "sequence_org": "V", "sequence_mut": "I", "comment": "Somatic mutation passed 1 filters: glycogene of type=glycogene, carbohydrate synthesis and metabolism/nucleotide synthesis.", "chr_id": "3", "chr_pos": "49721847", "ref_nt": "T", "alt_nt": "null", "minor_allelic_frequency": "", "site_lbl": "V330", "disease": [ { "disease_id": "DOID:0110294", "recommended_name": { "id": "DOID:0110294", "resource": "Disease Ontology", "url": "https://disease-ontology.org/term/DOID:0110294", "name": "autosomal recessive limb-girdle muscular dystrophy type 2T", "description": "An autosomal recessive limb-girdle muscular dystrophy that has_material_basis_in homozygous or compound heterozygous mutation in the GMPPB gene encoding the beta subunit of GDP-mannose pyrophosphorylase on chromosome 3p21." }, "synonyms": [ { "id": "DOID:0110294", "resource": "Disease Ontology", "url": "https://disease-ontology.org/term/DOID:0110294", "name": "LGMD2T", "description": "" }, { "id": "DOID:0110294", "resource": "Disease Ontology", "url": "https://disease-ontology.org/term/DOID:0110294", "name": "MDDGC14", "description": "" }, { "id": "DOID:0110294", "resource": "Disease Ontology", "url": "https://disease-ontology.org/term/DOID:0110294", "name": "muscular dystrophy limb-girdle type 2T", "description": "" }, { "id": "DOID:0110294", "resource": "Disease Ontology", "url": "https://disease-ontology.org/term/DOID:0110294", "name": "muscular dystrophy-dystroglycanopathy (limb-girdle) type C14", "description": "" }, { "id": "DOID:0110294", "resource": "Disease Ontology", "url": "https://disease-ontology.org/term/DOID:0110294", "name": "muscular dystrophy-dystroglycanopathy limb-girdle GMPPB-related", "description": "" }, { "id": "MONDO:0014142", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0014142", "name": "autosomal recessive limb-girdle muscular dystrophy type 2T", "description": "Autosomal recessive limb-girdle muscular dystrophy type 2T (LGMD2T) is a form of limb-girdle muscular dystrophy, that can present from birth to early childhood, characterized by hypotonia, microcephaly, mild proximal muscle weakness (leading to delayed walking and difficulty climbing stairs), mild intellectual disability and epilepsy. Additional manifestations reported in some patients include cataracts, nystagmus, cardiomyopathy, and respiratory insufficiency." }, { "id": "MONDO:0014142", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0014142", "name": "GMPPB autosomal recessive limb-girdle muscular dystrophy", "description": "" }, { "id": "MONDO:0014142", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0014142", "name": "LGMD-GMPPB related", "description": "" }, { "id": "MONDO:0014142", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0014142", "name": "LGMD2T", "description": "" }, { "id": "MONDO:0014142", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0014142", "name": "MDDGC14", "description": "" }, { "id": "MONDO:0014142", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0014142", "name": "autosomal recessive limb-girdle muscular dystrophy caused by mutation in GMPPB", "description": "" }, { "id": "MONDO:0014142", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0014142", "name": "limb-girdle muscular dystrophy type 2T", "description": "" }, { "id": "MONDO:0014142", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0014142", "name": "muscular dystrophy-dystroglycanopathy (limb-girdle), type C, 14", "description": "" }, { "id": "MIM:615352", "resource": "MIM", "url": "https://www.omim.org/entry/615352", "name": "Muscular dystrophy-dystroglycanopathy limb-girdle C14", "description": "Muscular dystrophy-dystroglycanopathy limb-girdle C14" } ], "unlinked_id_list": [], "evidence": [ { "id": "615352", "database": "MIM", "url": "https://www.omim.org/entry/615352" }, { "id": "GMPPB", "database": "Genomics England", "url": "https://panelapp.genomicsengland.co.uk/panels/25/gene/GMPPB/#!details" }, { "id": "0110294", "database": "AGR", "url": "https://www.alliancegenome.org/disease/DOID:0110294" } ] }, { "disease_id": "DOID:0111233", "recommended_name": { "id": "DOID:0111233", "resource": "Disease Ontology", "url": "https://disease-ontology.org/term/DOID:0111233", "name": "congenital muscular dystrophy-dystroglycanopathy type A14", "description": "A congenital muscular dystrophy-dystroglycanopathy type A that has_material_basis_in homozygous or compound heterozygous mutation in in GMPPB on 3p21.31." }, "synonyms": [ { "id": "DOID:0111233", "resource": "Disease Ontology", "url": "https://disease-ontology.org/term/DOID:0111233", "name": "Walker-Warburg syndrome or muscle-eye-brain disease GMPPB-related", "description": "" }, { "id": "DOID:0111233", "resource": "Disease Ontology", "url": "https://disease-ontology.org/term/DOID:0111233", "name": "MDDGA14", "description": "" }, { "id": "DOID:0111233", "resource": "Disease Ontology", "url": "https://disease-ontology.org/term/DOID:0111233", "name": "congenital muscular dystrophy-dystroglycanopathy with brain and eye anomalies type A14", "description": "" }, { "id": "MONDO:0014140", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0014140", "name": "muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A14", "description": "" }, { "id": "MONDO:0014140", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0014140", "name": "muscle-eye-brain-GMPPB related", "description": "" }, { "id": "MONDO:0014140", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0014140", "name": "MDDGA14", "description": "" }, { "id": "MONDO:0014140", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0014140", "name": "muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A, 14", "description": "" }, { "id": "MIM:615350", "resource": "MIM", "url": "https://www.omim.org/entry/615350", "name": "Muscular dystrophy-dystroglycanopathy congenital with brain and eye anomalies A14", "description": "Muscular dystrophy-dystroglycanopathy congenital with brain and eye anomalies A14" } ], "unlinked_id_list": [], "evidence": [ { "id": "0014140", "database": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0014140" }, { "id": "615350", "database": "MIM", "url": "https://www.omim.org/entry/615350" }, { "id": "GMPPB", "database": "Genomics England", "url": "https://panelapp.genomicsengland.co.uk/panels/25/gene/GMPPB/#!details" }, { "id": "0111233", "database": "AGR", "url": "https://www.alliancegenome.org/disease/DOID:0111233" } ] }, { "disease_id": "DOID:0112377", "recommended_name": { "id": "DOID:0112377", "resource": "Disease Ontology", "url": "https://disease-ontology.org/term/DOID:0112377", "name": "muscular dystrophy-dystroglycanopathy type B14", "description": "A muscular dystrophy-dystroglycanopathy type B that has_material_basis_in homozygous or compound heterozygous mutation in the GMPPB gene on chromosome 3p21.31." }, "synonyms": [ { "id": "DOID:0112377", "resource": "Disease Ontology", "url": "https://disease-ontology.org/term/DOID:0112377", "name": "MDDGB14", "description": "" }, { "id": "DOID:0112377", "resource": "Disease Ontology", "url": "https://disease-ontology.org/term/DOID:0112377", "name": "congenital muscular dystrophy GMPPB-related", "description": "" }, { "id": "MONDO:0014141", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0014141", "name": "muscular dystrophy-dystroglycanopathy (congenital with intellectual disability), type B14", "description": "" }, { "id": "MONDO:0014141", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0014141", "name": "congenital muscular dystrophy-GMPPB related", "description": "" }, { "id": "MONDO:0014141", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0014141", "name": "MDDGB14", "description": "" }, { "id": "MONDO:0014141", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0014141", "name": "muscular dystrophy-dystroglycanopathy (congenital with intellectual disability), type B, 14", "description": "" }, { "id": "MONDO:0014141", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0014141", "name": "muscular dystrophy-dystroglycanopathy (congenital with mental retardation), type B, 14", "description": "" }, { "id": "MIM:615351", "resource": "MIM", "url": "https://www.omim.org/entry/615351", "name": "Muscular dystrophy-dystroglycanopathy congenital with impaired intellectual development B14", "description": "Muscular dystrophy-dystroglycanopathy congenital with impaired intellectual development B14" } ], "unlinked_id_list": [], "evidence": [ { "id": "615351", "database": "MIM", "url": "https://www.omim.org/entry/615351" }, { "id": "GMPPB", "database": "Genomics England", "url": "https://panelapp.genomicsengland.co.uk/panels/25/gene/GMPPB/#!details" }, { "id": "0112377", "database": "AGR", "url": "https://www.alliancegenome.org/disease/DOID:0112377" } ] } ], "keywords": [ "ebi", "somatic", "disease" ], "filter_code": "000000000000000000010.00000000000000.000000000001000000.00001.11.000.000", "uniprot_canonical_ac": "Q9Y5P6-1" }, { "evidence": [ { "id": "rs397509422", "database": "dbSNP", "url": "https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=rs397509422" }, { "id": "rs397509422", "database": "ExAC", "url": "https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=rs397509422" }, { "id": "rs397509422", "database": "TOPMed", "url": "https://www.ncbi.nlm.nih.gov/snp/rs397509422#frequency_tab" }, { "id": "rs397509422", "database": "gnomAD", "url": "http://gnomad.broadinstitute.org/awesome?query=rs397509422" }, { "id": "23768512", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23768512" } ], "glycoeffect": [], "start_pos": 334, "end_pos": 334, "sequence_org": "D", "sequence_mut": "N", "comment": "Germline mutation passed 1 filters: glycogene of type=glycogene, carbohydrate synthesis and metabolism/nucleotide synthesis.", "chr_id": "3", "chr_pos": "49721835", "ref_nt": "T", "alt_nt": "null", "minor_allelic_frequency": "", "site_lbl": "D334", "disease": [ { "disease_id": "DOID:0110294", "recommended_name": { "id": "DOID:0110294", "resource": "Disease Ontology", "url": "https://disease-ontology.org/term/DOID:0110294", "name": "autosomal recessive limb-girdle muscular dystrophy type 2T", "description": "An autosomal recessive limb-girdle muscular dystrophy that has_material_basis_in homozygous or compound heterozygous mutation in the GMPPB gene encoding the beta subunit of GDP-mannose pyrophosphorylase on chromosome 3p21." }, "synonyms": [ { "id": "DOID:0110294", "resource": "Disease Ontology", "url": "https://disease-ontology.org/term/DOID:0110294", "name": "LGMD2T", "description": "" }, { "id": "DOID:0110294", "resource": "Disease Ontology", "url": "https://disease-ontology.org/term/DOID:0110294", "name": "MDDGC14", "description": "" }, { "id": "DOID:0110294", "resource": "Disease Ontology", "url": "https://disease-ontology.org/term/DOID:0110294", "name": "muscular dystrophy limb-girdle type 2T", "description": "" }, { "id": "DOID:0110294", "resource": "Disease Ontology", "url": "https://disease-ontology.org/term/DOID:0110294", "name": "muscular dystrophy-dystroglycanopathy (limb-girdle) type C14", "description": "" }, { "id": "DOID:0110294", "resource": "Disease Ontology", "url": "https://disease-ontology.org/term/DOID:0110294", "name": "muscular dystrophy-dystroglycanopathy limb-girdle GMPPB-related", "description": "" }, { "id": "MONDO:0014142", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0014142", "name": "autosomal recessive limb-girdle muscular dystrophy type 2T", "description": "Autosomal recessive limb-girdle muscular dystrophy type 2T (LGMD2T) is a form of limb-girdle muscular dystrophy, that can present from birth to early childhood, characterized by hypotonia, microcephaly, mild proximal muscle weakness (leading to delayed walking and difficulty climbing stairs), mild intellectual disability and epilepsy. Additional manifestations reported in some patients include cataracts, nystagmus, cardiomyopathy, and respiratory insufficiency." }, { "id": "MONDO:0014142", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0014142", "name": "GMPPB autosomal recessive limb-girdle muscular dystrophy", "description": "" }, { "id": "MONDO:0014142", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0014142", "name": "LGMD-GMPPB related", "description": "" }, { "id": "MONDO:0014142", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0014142", "name": "LGMD2T", "description": "" }, { "id": "MONDO:0014142", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0014142", "name": "MDDGC14", "description": "" }, { "id": "MONDO:0014142", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0014142", "name": "autosomal recessive limb-girdle muscular dystrophy caused by mutation in GMPPB", "description": "" }, { "id": "MONDO:0014142", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0014142", "name": "limb-girdle muscular dystrophy type 2T", "description": "" }, { "id": "MONDO:0014142", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0014142", "name": "muscular dystrophy-dystroglycanopathy (limb-girdle), type C, 14", "description": "" }, { "id": "MIM:615352", "resource": "MIM", "url": "https://www.omim.org/entry/615352", "name": "Muscular dystrophy-dystroglycanopathy limb-girdle C14", "description": "Muscular dystrophy-dystroglycanopathy limb-girdle C14" } ], "unlinked_id_list": [], "evidence": [ { "id": "615352", "database": "MIM", "url": "https://www.omim.org/entry/615352" }, { "id": "GMPPB", "database": "Genomics England", "url": "https://panelapp.genomicsengland.co.uk/panels/25/gene/GMPPB/#!details" }, { "id": "0110294", "database": "AGR", "url": "https://www.alliancegenome.org/disease/DOID:0110294" } ] }, { "disease_id": "DOID:0111233", "recommended_name": { "id": "DOID:0111233", "resource": "Disease Ontology", "url": "https://disease-ontology.org/term/DOID:0111233", "name": "congenital muscular dystrophy-dystroglycanopathy type A14", "description": "A congenital muscular dystrophy-dystroglycanopathy type A that has_material_basis_in homozygous or compound heterozygous mutation in in GMPPB on 3p21.31." }, "synonyms": [ { "id": "DOID:0111233", "resource": "Disease Ontology", "url": "https://disease-ontology.org/term/DOID:0111233", "name": "Walker-Warburg syndrome or muscle-eye-brain disease GMPPB-related", "description": "" }, { "id": "DOID:0111233", "resource": "Disease Ontology", "url": "https://disease-ontology.org/term/DOID:0111233", "name": "MDDGA14", "description": "" }, { "id": "DOID:0111233", "resource": "Disease Ontology", "url": "https://disease-ontology.org/term/DOID:0111233", "name": "congenital muscular dystrophy-dystroglycanopathy with brain and eye anomalies type A14", "description": "" }, { "id": "MONDO:0014140", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0014140", "name": "muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A14", "description": "" }, { "id": "MONDO:0014140", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0014140", "name": "muscle-eye-brain-GMPPB related", "description": "" }, { "id": "MONDO:0014140", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0014140", "name": "MDDGA14", "description": "" }, { "id": "MONDO:0014140", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0014140", "name": "muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A, 14", "description": "" }, { "id": "MIM:615350", "resource": "MIM", "url": "https://www.omim.org/entry/615350", "name": "Muscular dystrophy-dystroglycanopathy congenital with brain and eye anomalies A14", "description": "Muscular dystrophy-dystroglycanopathy congenital with brain and eye anomalies A14" } ], "unlinked_id_list": [], "evidence": [ { "id": "0014140", "database": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0014140" }, { "id": "615350", "database": "MIM", "url": "https://www.omim.org/entry/615350" }, { "id": "GMPPB", "database": "Genomics England", "url": "https://panelapp.genomicsengland.co.uk/panels/25/gene/GMPPB/#!details" }, { "id": "0111233", "database": "AGR", "url": "https://www.alliancegenome.org/disease/DOID:0111233" } ] }, { "disease_id": "DOID:0112377", "recommended_name": { "id": "DOID:0112377", "resource": "Disease Ontology", "url": "https://disease-ontology.org/term/DOID:0112377", "name": "muscular dystrophy-dystroglycanopathy type B14", "description": "A muscular dystrophy-dystroglycanopathy type B that has_material_basis_in homozygous or compound heterozygous mutation in the GMPPB gene on chromosome 3p21.31." }, "synonyms": [ { "id": "DOID:0112377", "resource": "Disease Ontology", "url": "https://disease-ontology.org/term/DOID:0112377", "name": "MDDGB14", "description": "" }, { "id": "DOID:0112377", "resource": "Disease Ontology", "url": "https://disease-ontology.org/term/DOID:0112377", "name": "congenital muscular dystrophy GMPPB-related", "description": "" }, { "id": "MONDO:0014141", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0014141", "name": "muscular dystrophy-dystroglycanopathy (congenital with intellectual disability), type B14", "description": "" }, { "id": "MONDO:0014141", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0014141", "name": "congenital muscular dystrophy-GMPPB related", "description": "" }, { "id": "MONDO:0014141", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0014141", "name": "MDDGB14", "description": "" }, { "id": "MONDO:0014141", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0014141", "name": "muscular dystrophy-dystroglycanopathy (congenital with intellectual disability), type B, 14", "description": "" }, { "id": "MONDO:0014141", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0014141", "name": "muscular dystrophy-dystroglycanopathy (congenital with mental retardation), type B, 14", "description": "" }, { "id": "MIM:615351", "resource": "MIM", "url": "https://www.omim.org/entry/615351", "name": "Muscular dystrophy-dystroglycanopathy congenital with impaired intellectual development B14", "description": "Muscular dystrophy-dystroglycanopathy congenital with impaired intellectual development B14" } ], "unlinked_id_list": [], "evidence": [ { "id": "615351", "database": "MIM", "url": "https://www.omim.org/entry/615351" }, { "id": "GMPPB", "database": "Genomics England", "url": "https://panelapp.genomicsengland.co.uk/panels/25/gene/GMPPB/#!details" }, { "id": "0112377", "database": "AGR", "url": "https://www.alliancegenome.org/disease/DOID:0112377" } ] } ], "keywords": [ "ebi", "germline", "disease" ], "filter_code": "000100000000000000000.00000000000000.000000000001000000.00001.11.000.000", "uniprot_canonical_ac": "Q9Y5P6-1" }, { "evidence": [ { "id": "rs397509423", "database": "dbSNP", "url": "https://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&rs=rs397509423" }, { "id": "rs397509423", "database": "ENSEMBL", "url": "https://www.ensembl.org/id/rs397509423" }, { "id": "23768512", "database": "PubMed", "url": "https://pubmed.ncbi.nlm.nih.gov/23768512" } ], "glycoeffect": [], "start_pos": 74, "end_pos": 74, "sequence_org": "R", "sequence_mut": "*", "comment": "Germline mutation passed 1 filters: glycogene of type=glycogene, carbohydrate synthesis and metabolism/nucleotide synthesis.", "chr_id": "3", "chr_pos": "49723293", "ref_nt": "A", "alt_nt": "null", "minor_allelic_frequency": "", "site_lbl": "R74", "disease": [ { "disease_id": "DOID:0111233", "recommended_name": { "id": "DOID:0111233", "resource": "Disease Ontology", "url": "https://disease-ontology.org/term/DOID:0111233", "name": "congenital muscular dystrophy-dystroglycanopathy type A14", "description": "A congenital muscular dystrophy-dystroglycanopathy type A that has_material_basis_in homozygous or compound heterozygous mutation in in GMPPB on 3p21.31." }, "synonyms": [ { "id": "DOID:0111233", "resource": "Disease Ontology", "url": "https://disease-ontology.org/term/DOID:0111233", "name": "Walker-Warburg syndrome or muscle-eye-brain disease GMPPB-related", "description": "" }, { "id": "DOID:0111233", "resource": "Disease Ontology", "url": "https://disease-ontology.org/term/DOID:0111233", "name": "MDDGA14", "description": "" }, { "id": "DOID:0111233", "resource": "Disease Ontology", "url": "https://disease-ontology.org/term/DOID:0111233", "name": "congenital muscular dystrophy-dystroglycanopathy with brain and eye anomalies type A14", "description": "" }, { "id": "MONDO:0014140", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0014140", "name": "muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A14", "description": "" }, { "id": "MONDO:0014140", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0014140", "name": "muscle-eye-brain-GMPPB related", "description": "" }, { "id": "MONDO:0014140", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0014140", "name": "MDDGA14", "description": "" }, { "id": "MONDO:0014140", "resource": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0014140", "name": "muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A, 14", "description": "" }, { "id": "MIM:615350", "resource": "MIM", "url": "https://www.omim.org/entry/615350", "name": "Muscular dystrophy-dystroglycanopathy congenital with brain and eye anomalies A14", "description": "Muscular dystrophy-dystroglycanopathy congenital with brain and eye anomalies A14" } ], "unlinked_id_list": [], "evidence": [ { "id": "0014140", "database": "MONDO", "url": "https://monarchinitiative.org/disease/MONDO:0014140" }, { "id": "615350", "database": "MIM", "url": "https://www.omim.org/entry/615350" }, { "id": "GMPPB", "database": "Genomics England", "url": "https://panelapp.genomicsengland.co.uk/panels/25/gene/GMPPB/#!details" }, { "id": "0111233", "database": "AGR", "url": "https://www.alliancegenome.org/disease/DOID:0111233" } ] } ], "keywords": [ "ebi", "germline", "disease" ], "filter_code": "010000000000000000000.00000000000000.000000000001000000.00001.11.000.000", "uniprot_canonical_ac": "Q9Y5P6-1" } ], "record_id": "pubmed.23768512", "abstract": "", "glycosylation": [], "mutagenesis": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "GMPPB-congenital disorders of glycosylation associate with decreased enzymatic activity of GMPPB.", "journal": "Mol. Biomed.", "date": "2021", "authors": "Liu Zhe, Wang Yan, Yang Fan, Yang Qin, Mo Xianming, Burstein Ezra, Jia Da, Cai Xiao-Tang, Tu Yingfeng", "reference": { "type": "PubMed", "id": "35006422", "url": "https://pubmed.ncbi.nlm.nih.gov/35006422" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q6DBU5-1", "protein_name": "Mannose-1-phosphate guanylyltransferase catalytic subunit beta", "gene_name": "gmppb", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q6DBU5", "url": "https://www.uniprot.org/uniprotkb/Q6DBU5" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.35006422", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "m6A modulates haematopoietic stem and progenitor cell specification.", "journal": "Nature", "date": "2017-09-14", "authors": "Zhang Chunxia, Chen Yusheng, Sun Baofa, Wang Lu, Yang Ying, Ma Dongyuan, Lv Junhua, Heng Jian, Ding Yanyan, Xue Yuanyuan, Lu Xinyan, Xiao Wen, Yang Yun-Gui, Liu Feng", "reference": { "type": "PubMed", "id": "28869969", "url": "https://pubmed.ncbi.nlm.nih.gov/28869969" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1R777-1", "protein_name": "N(6)-adenosine-methyltransferase subunit METTL3", "gene_name": "mettl3", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q8C3P7-1", "protein_name": "N(6)-adenosine-methyltransferase catalytic subunit METTL3", "gene_name": "Mettl3", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "E7F1H9-1", "protein_name": "YTH domain-containing family protein 2", "gene_name": "ythdf2", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1R777", "url": "https://www.uniprot.org/uniprotkb/F1R777" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "mutagenesis": [ { "start_pos": 445, "end_pos": 445, "sequence_org": "W", "sequence_mut": "A", "comment": "Abolished binding to N6-methyladenosine (m6A)-containing RNAs; when associated to A-499 and A-504.", "evidence": [ { "database": "UniProtKB", "id": "E7F1H9", "url": "https://www.uniprot.org/uniprotkb/E7F1H9" }, { "database": "PubMed", "id": "28869969", "url": "https://pubmed.ncbi.nlm.nih.gov/28869969" } ], "uniprot_canonical_ac": "E7F1H9-1" }, { "start_pos": 499, "end_pos": 499, "sequence_org": "W", "sequence_mut": "A", "comment": "Abolished binding to N6-methyladenosine (m6A)-containing RNAs; when associated to A-445 and A-504.", "evidence": [ { "database": "UniProtKB", "id": "E7F1H9", "url": "https://www.uniprot.org/uniprotkb/E7F1H9" }, { "database": "PubMed", "id": "28869969", "url": "https://pubmed.ncbi.nlm.nih.gov/28869969" } ], "uniprot_canonical_ac": "E7F1H9-1" }, { "start_pos": 504, "end_pos": 504, "sequence_org": "W", "sequence_mut": "A", "comment": "Abolished binding to N6-methyladenosine (m6A)-containing RNAs; when associated to A-445 and A-499.", "evidence": [ { "database": "UniProtKB", "id": "E7F1H9", "url": "https://www.uniprot.org/uniprotkb/E7F1H9" }, { "database": "PubMed", "id": "28869969", "url": "https://pubmed.ncbi.nlm.nih.gov/28869969" } ], "uniprot_canonical_ac": "E7F1H9-1" } ], "record_id": "pubmed.28869969", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Gene expression analysis of zebrafish retinal ganglion cells during optic nerve regeneration identifies KLF6a and KLF7a as important regulators of axon regeneration.", "journal": "Dev. Biol.", "date": "2007", "authors": "Veldman Matthew B, Bemben Michael A, Thompson Robert C, Goldman Daniel", "reference": { "type": "PubMed", "id": "17949705", "url": "https://pubmed.ncbi.nlm.nih.gov/17949705" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1R7F0-1", "protein_name": "Krueppel-like factor 6a", "gene_name": "klf6a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M2BEK7-1", "protein_name": "cAMP responsive element binding protein 3-like 3 like", "gene_name": "creb3l3l", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1R7F0", "url": "https://www.uniprot.org/uniprotkb/F1R7F0" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.17949705", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Klf6/copeb is required for hepatic outgrowth in zebrafish and for hepatocyte specification in mouse ES cells.", "journal": "Dev. Biol.", "date": "2010", "authors": "Zhao Xiao, Monson Christopher, Gao Chuan, Gouon-Evans Valerie, Matsumoto Nobuyuki, Sadler Kirsten C, Friedman Scott L", "reference": { "type": "PubMed", "id": "20430021", "url": "https://pubmed.ncbi.nlm.nih.gov/20430021" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1R7F0-1", "protein_name": "Krueppel-like factor 6a", "gene_name": "klf6a", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1R7F0", "url": "https://www.uniprot.org/uniprotkb/F1R7F0" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.20430021", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The Vascular Niche Regulates Hematopoietic Stem and Progenitor Cell Lodgment and Expansion via klf6a-ccl25b.", "journal": "Dev. Cell", "date": "2017", "authors": "Xue Yuanyuan, Lv Junhua, Zhang Chunxia, Wang Lu, Ma Dongyuan, Liu Feng", "reference": { "type": "PubMed", "id": "28803829", "url": "https://pubmed.ncbi.nlm.nih.gov/28803829" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1R7F0-1", "protein_name": "Krueppel-like factor 6a", "gene_name": "klf6a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58HMF3-1", "protein_name": "Cell division cycle 5-like protein", "gene_name": "cdc5l", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1P631-1", "protein_name": "C-C motif chemokine 19b precursor", "gene_name": "ccl19b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NUS6-1", "protein_name": "Condensin complex subunit 1", "gene_name": "ncapd2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A2R8Q8Y8-1", "protein_name": "Chemokine (C-X-C motif) ligand 18a, duplicate 1 precursor", "gene_name": "cxcl18a.1", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1R7F0", "url": "https://www.uniprot.org/uniprotkb/F1R7F0" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.28803829", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Stochastic cell-cycle entry and cell-state-dependent fate outputs of injury-reactivated tectal radial glia in zebrafish.", "journal": "Elife", "date": "2019", "authors": "Yu Shuguang, He Jie", "reference": { "type": "PubMed", "id": "31442201", "url": "https://pubmed.ncbi.nlm.nih.gov/31442201" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1R7F0-1", "protein_name": "Krueppel-like factor 6a", "gene_name": "klf6a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1N808-1", "protein_name": "High mobility group protein B2", "gene_name": "hmgb2a", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1R7F0", "url": "https://www.uniprot.org/uniprotkb/F1R7F0" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.31442201", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The blood flow-klf6a-tagln2 axis drives vessel pruning in zebrafish by regulating endothelial cell rearrangement and actin cytoskeleton dynamics.", "journal": "PLoS Genet.", "date": "2021", "authors": "Wen Lin, Zhang Tao, Wang Jinxuan, Jin Xuepu, Rouf Muhammad Abdul, Luo Desha, Zhu Yuan, Lei Daoxi, Gregersen Hans, Wang Yeqi, Wang Guixue", "reference": { "type": "PubMed", "id": "34319989", "url": "https://pubmed.ncbi.nlm.nih.gov/34319989" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1R7F0-1", "protein_name": "Krueppel-like factor 6a", "gene_name": "klf6a", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1R7F0", "url": "https://www.uniprot.org/uniprotkb/F1R7F0" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.34319989", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "DUSP2 deletion with CRISPR/Cas9 promotes Mauthner cell axonal regeneration at the early stage of zebrafish.", "journal": "Neural Regen Res", "date": "2023", "authors": "Shao Guo-Jian, Wang Xin-Liang, Wei Mei-Li, Ren Da-Long, Hu Bing", "reference": { "type": "PubMed", "id": "36018180", "url": "https://pubmed.ncbi.nlm.nih.gov/36018180" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1R7F0-1", "protein_name": "Krueppel-like factor 6a", "gene_name": "klf6a", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1R7F0", "url": "https://www.uniprot.org/uniprotkb/F1R7F0" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.36018180", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Some distinctive features of zebrafish myogenesis based on unexpected distributions of the muscle cytoskeletal proteins actin, myosin, desmin, alpha-actinin, troponin and titin.", "journal": "Mech. Dev.", "date": "2002", "authors": "Costa Manoel L, Escaleira Roberta C, Rodrigues Viviane B, Manasfi Muhamed, Mermelstein Claudia S", "reference": { "type": "PubMed", "id": "12128209", "url": "https://pubmed.ncbi.nlm.nih.gov/12128209" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1R8W3-1", "protein_name": "Desmin", "gene_name": "desma", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1R8W3", "url": "https://www.uniprot.org/uniprotkb/F1R8W3" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.12128209", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Treatment with Myf5-morpholino results in somite patterning and brain formation defects in zebrafish.", "journal": "Differentiation", "date": "2002", "authors": "Chen Yau-Hung, Tsai Huai-Jen", "reference": { "type": "PubMed", "id": "12366382", "url": "https://pubmed.ncbi.nlm.nih.gov/12366382" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1R8W3-1", "protein_name": "Desmin", "gene_name": "desma", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1R8W3", "url": "https://www.uniprot.org/uniprotkb/F1R8W3" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.12366382", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Up-regulation of muscle-specific transcription factors during embryonic somitogenesis of zebrafish (Danio rerio) by knock-down of myostatin-1.", "journal": "Dev. Dyn.", "date": "2004", "authors": "Amali Aseervatham Anusha, Lin Cliff Ji-Fan, Chen Yi-Hsuan, Wang Wei-Lun, Gong Hong-Yi, Lee Chiou-Yueh, Ko Yen-Lin, Lu Jenn-Khan, Her Guor Mour, Chen Thomas T, Wu Jen-Leih", "reference": { "type": "PubMed", "id": "15042708", "url": "https://pubmed.ncbi.nlm.nih.gov/15042708" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1R8W3-1", "protein_name": "Desmin", "gene_name": "desma", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "O42222-1", "protein_name": "Growth/differentiation factor 8", "gene_name": "mstnb", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A2BHA3-1", "protein_name": "creatine kinase", "gene_name": "ckma", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1R8W3", "url": "https://www.uniprot.org/uniprotkb/F1R8W3" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.15042708", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Scl is required for dorsal aorta as well as blood formation in zebrafish embryos.", "journal": "Blood", "date": "2005", "authors": "Patterson Lucy J, Gering Martin, Patient Roger", "reference": { "type": "PubMed", "id": "15644413", "url": "https://pubmed.ncbi.nlm.nih.gov/15644413" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1R8W3-1", "protein_name": "Desmin", "gene_name": "desma", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "O93507-1", "protein_name": "T-cell acute lymphocytic leukemia protein 1 homolog", "gene_name": "tal1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E9QFU4-1", "protein_name": "V-myb avian myeloblastosis viral oncogene homolog-like 2a", "gene_name": "mybl2a", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1R8W3", "url": "https://www.uniprot.org/uniprotkb/F1R8W3" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.15644413", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "High-throughput transcriptome sequencing reveals the key stages of cardiovascular development in zebrafish embryos.", "journal": "BMC Genomics", "date": "2022", "authors": "Zhou Chune, Zhao Wei, Zhang Shuqiang, Ma Junguo, Sultan Yousef, Li Xiaoyu", "reference": { "type": "PubMed", "id": "35964013", "url": "https://pubmed.ncbi.nlm.nih.gov/35964013" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1R8W3-1", "protein_name": "Desmin", "gene_name": "desma", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB32TUG0-1", "protein_name": "Voltage-dependent L-type calcium channel subunit beta-2", "gene_name": "cacnb2a", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1R8W3", "url": "https://www.uniprot.org/uniprotkb/F1R8W3" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.35964013", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Redox modification of nuclear actin by MICAL-2 regulates SRF signaling.", "journal": "Cell", "date": "2014", "authors": "Lundquist MR, Storaska AJ, Liu TC, Larsen SD, Evans T, Neubig RR, Jaffrey SR", "reference": { "type": "PubMed", "id": "24440334", "url": "https://pubmed.ncbi.nlm.nih.gov/24440334" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1RA39-5", "protein_name": "[F-actin]-monooxygenase mical2b", "gene_name": "mical2b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q969V6-1", "protein_name": "Myocardin-related transcription factor A", "gene_name": "MRTFA", "tax_name": "Human" }, { "uniprot_canonical_ac": "A0AC58JCE3-1", "protein_name": "Calponin", "gene_name": "cnn1a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q7RTP6-1", "protein_name": "[F-actin]-monooxygenase MICAL3", "gene_name": "MICAL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TDZ2-1", "protein_name": "[F-actin]-monooxygenase MICAL1", "gene_name": "MICAL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94851-7", "protein_name": "[F-actin]-monooxygenase MICAL2", "gene_name": "MICAL2", "tax_name": "Human" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1RA39", "url": "https://www.uniprot.org/uniprotkb/F1RA39" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "mutagenesis": [ { "start_pos": 680, "end_pos": 683, "sequence_org": "KRRK", "sequence_mut": "AAAA", "comment": "In MICAL-3NLSMut; abolishes nuclear localization.", "evidence": [ { "database": "UniProtKB", "id": "Q7RTP6", "url": "https://www.uniprot.org/uniprotkb/Q7RTP6" }, { "database": "PubMed", "id": "24440334", "url": "https://pubmed.ncbi.nlm.nih.gov/24440334" } ], "uniprot_canonical_ac": "Q7RTP6-1" }, { "start_pos": 677, "end_pos": 681, "sequence_org": "KRRRK", "sequence_mut": "AAAAA", "comment": "In MICAL-2NLSMut; abolishes nuclear localization.", "evidence": [ { "database": "UniProtKB", "id": "O94851", "url": "https://www.uniprot.org/uniprotkb/O94851" }, { "database": "PubMed", "id": "24440334", "url": "https://pubmed.ncbi.nlm.nih.gov/24440334" } ], "uniprot_canonical_ac": "O94851-7" }, { "start_pos": 95, "end_pos": 95, "sequence_org": "G", "sequence_mut": "V", "comment": "Blocks FAD binding and abolishes catalytic activity.", "evidence": [ { "database": "UniProtKB", "id": "O94851", "url": "https://www.uniprot.org/uniprotkb/O94851" }, { "database": "PubMed", "id": "24440334", "url": "https://pubmed.ncbi.nlm.nih.gov/24440334" } ], "uniprot_canonical_ac": "O94851-7" } ], "record_id": "pubmed.24440334", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "An inherited functional circadian clock in zebrafish embryos.", "journal": "Science", "date": "2000", "authors": "Delaunay F, Thisse C, Marchand O, Laudet V, Thisse B", "reference": { "type": "PubMed", "id": "10894777", "url": "https://pubmed.ncbi.nlm.nih.gov/10894777" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1RAU6-1", "protein_name": "Nuclear receptor subfamily 1 group D member 1", "gene_name": "nr1d1", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1RAU6", "url": "https://www.uniprot.org/uniprotkb/F1RAU6" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.10894777", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Otx5 regulates genes that show circadian expression in the zebrafish pineal complex.", "journal": "Nat. Genet.", "date": "2002", "authors": "Gamse Joshua T, Shen Yu-Chi, Thisse Christine, Thisse Bernard, Raymond Pamela A, Halpern Marnie E, Liang Jennifer O", "reference": { "type": "PubMed", "id": "11753388", "url": "https://pubmed.ncbi.nlm.nih.gov/11753388" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1RAU6-1", "protein_name": "Nuclear receptor subfamily 1 group D member 1", "gene_name": "nr1d1", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1RAU6", "url": "https://www.uniprot.org/uniprotkb/F1RAU6" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.11753388", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Chronodisruption and Loss of Melatonin Rhythm, Associated with Alterations in Daily Motor Activity and Mitochondrial Dynamics in Parkinsonian Zebrafish, Are Corrected by Melatonin Treatment.", "journal": "Antioxidants", "date": "2023", "authors": "Aranda-Mart\u00ednez Paula, Fern\u00e1ndez-Mart\u00ednez Jos\u00e9, Ram\u00edrez-Casas Yolanda, Rodr\u00edguez-Santana C\u00e9sar, Rusanova Iryna, Escames Germaine, Acu\u00f1a-Castroviejo Dar\u00edo", "reference": { "type": "PubMed", "id": "37107331", "url": "https://pubmed.ncbi.nlm.nih.gov/37107331" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1RAU6-1", "protein_name": "Nuclear receptor subfamily 1 group D member 1", "gene_name": "nr1d1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q1LXW3-1", "protein_name": "Circadian associated repressor of transcription a", "gene_name": "ciarta", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M2BJP0-1", "protein_name": "Mitofusin-2", "gene_name": "mfn2", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1RAU6", "url": "https://www.uniprot.org/uniprotkb/F1RAU6" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.37107331", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Oda16/Wdr69 is essential for axonemal dynein assembly and ciliary motility during zebrafish embryogenesis.", "journal": "Developmental dynamics : an official publication of the American Association of Anatomists", "date": "2010", "authors": "Gao C, Wang G, Amack JD, Mitchell DR", "reference": { "type": "PubMed", "id": "20568242", "url": "https://pubmed.ncbi.nlm.nih.gov/20568242" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q1LV15-1", "protein_name": "Dynein assembly factor with WD repeat domains 1", "gene_name": "daw1", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q1LV15", "url": "https://www.uniprot.org/uniprotkb/Q1LV15" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.20568242", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Dner inhibits neural progenitor proliferation and induces neuronal and glial differentiation in zebrafish.", "journal": "Dev. Biol.", "date": "2013", "authors": "Hsieh Fu-Yu, Ma Tsu-Lin, Shih Hung-Yu, Lin Sheng-Jia, Huang Ching-Wen, Wang Hsiao-Yun, Cheng Yi-Chuan", "reference": { "type": "PubMed", "id": "23328254", "url": "https://pubmed.ncbi.nlm.nih.gov/23328254" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q1LV15-1", "protein_name": "Dynein assembly factor with WD repeat domains 1", "gene_name": "daw1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q1LV16-1", "protein_name": "Solute carrier family 19 member 3b precursor", "gene_name": "slc19a3b", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB40E7W4-1", "protein_name": "PTB-containing, cubilin and LRP1-interacting protein", "gene_name": "pid1", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q1LV15", "url": "https://www.uniprot.org/uniprotkb/Q1LV15" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.23328254", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Daw1 regulates the timely onset of cilia motility during development.", "journal": "Development (Cambridge, England)", "date": "2022-06-15", "authors": "Bearce Elizabeth A, Irons Zoe H, Craig Samuel B, Kuhns Colin J, Sabazali Cynthia, Farnsworth Dylan R, Miller Adam C, Grimes Daniel T", "reference": { "type": "PubMed", "id": "35708608", "url": "https://pubmed.ncbi.nlm.nih.gov/35708608" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q1LV15-1", "protein_name": "Dynein assembly factor with WD repeat domains 1", "gene_name": "daw1", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q1LV15", "url": "https://www.uniprot.org/uniprotkb/Q1LV15" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "mutagenesis": [ { "start_pos": 140, "end_pos": 141, "sequence_org": "IA", "sequence_mut": "", "comment": "Mutant adults are viable and fertile, most show no obvious phenotypes. 20% exhibit spinal curves in dorsal-ventral and medio-lateral directions. Cilia show markedly reduced motility during early development, motility subsequently increase to attain close to wild-type levels. Delayed motility onset leads to differential effects on early and late cilia-dependent processes like abnormal body axis curves, self-corrected when motility later reaches wild-type levels. Larva mutants survey and correct body shape abnormalities.", "evidence": [ { "database": "UniProtKB", "id": "Q1LV15", "url": "https://www.uniprot.org/uniprotkb/Q1LV15" }, { "database": "PubMed", "id": "35708608", "url": "https://pubmed.ncbi.nlm.nih.gov/35708608" }, { "database": "PubMed", "id": "36074124", "url": "https://pubmed.ncbi.nlm.nih.gov/36074124" } ], "uniprot_canonical_ac": "Q1LV15-1" } ], "record_id": "pubmed.35708608", "abstract": "", "glycosylation": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A zebrafish model of X-linked adrenoleukodystrophy recapitulates key disease features and demonstrates a developmental requirement for abcd1 in oligodendrocyte patterning and myelination.", "journal": "Human molecular genetics", "date": "2017", "authors": "Strachan LR, Stevenson TJ, Freshner B, Keefe MD, Miranda Bowles D, Bonkowsky JL", "reference": { "type": "PubMed", "id": "28911205", "url": "https://pubmed.ncbi.nlm.nih.gov/28911205" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1RBC8-1", "protein_name": "ATP-binding cassette sub-family D member 1", "gene_name": "abcd1", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1RBC8", "url": "https://www.uniprot.org/uniprotkb/F1RBC8" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.28911205", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Postprandial regulation of growth- and metabolism-related factors in zebrafish.", "journal": "Zebrafish", "date": "2013", "authors": "Seiliez Iban, M\u00e9dale Fran\u00e7oise, Aguirre Peyo, Larquier M\u00e9lanie, Lanneretonne Laura, Alami-Durante H\u00e9l\u00e8ne, Panserat St\u00e9phane, Skiba-Cassy Sandrine", "reference": { "type": "PubMed", "id": "23659367", "url": "https://pubmed.ncbi.nlm.nih.gov/23659367" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1RC38-1", "protein_name": "Phosphotransferase", "gene_name": "gck", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1N1J9-1", "protein_name": "Glucose-6-phosphatase", "gene_name": "g6pc1a.1", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1RC38", "url": "https://www.uniprot.org/uniprotkb/F1RC38" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.23659367", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Programming effects of high-carbohydrate feeding of larvae on adult glucose metabolism in zebrafish, Danio rerio.", "journal": "Br. J. Nutr.", "date": "2014", "authors": "Fang Liu, Liang Xu-Fang, Zhou Yi, Guo Xiao-Ze, He Yan, Yi Ti-Lin, Liu Li-Wei, Yuan Xiao-Chen, Tao Ya-Xiong", "reference": { "type": "PubMed", "id": "24112146", "url": "https://pubmed.ncbi.nlm.nih.gov/24112146" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1RC38-1", "protein_name": "Phosphotransferase", "gene_name": "gck", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1RC38", "url": "https://www.uniprot.org/uniprotkb/F1RC38" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.24112146", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Glucose overload in yolk has little effect on the long-term modulation of carbohydrate metabolic genes in zebrafish (Danio rerio).", "journal": "J. Exp. Biol.", "date": "2014", "authors": "Rocha Filipa, Dias Jorge, Engrola Sofia, Gavaia Paulo, Geurden Inge, Dinis Maria Teresa, Panserat Stephane", "reference": { "type": "PubMed", "id": "24363414", "url": "https://pubmed.ncbi.nlm.nih.gov/24363414" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1RC38-1", "protein_name": "Phosphotransferase", "gene_name": "gck", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58H0W7-1", "protein_name": "Alpha-1,4 glucan phosphorylase", "gene_name": "pygl", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1RC38", "url": "https://www.uniprot.org/uniprotkb/F1RC38" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.24363414", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Study on Carbohydrate Metabolism in Adult Zebrafish (Danio rerio).", "journal": "Aquac Nutr", "date": "2023", "authors": "Gong Y., Jin J., Liu H., Liu Y., Zhang Z., Han D., Lu Q., Yang Y., Zhu X., Xie S., Xi L.", "reference": { "type": "PubMed", "id": "37901279", "url": "https://pubmed.ncbi.nlm.nih.gov/37901279" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1RC38-1", "protein_name": "Phosphotransferase", "gene_name": "gck", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1RC38", "url": "https://www.uniprot.org/uniprotkb/F1RC38" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.37901279", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Conserved glucokinase regulation in zebrafish confirms therapeutic utility for pharmacologic modulation in diabetes.", "journal": "Commun. Biol.", "date": "2024", "authors": "Meyer D., Stainier D.Y.R., Schmitner N., Kimmel R.A., Regele D., Bergerweiss I., Helker C., Mayer E., Thumer S.", "reference": { "type": "PubMed", "id": "39580550", "url": "https://pubmed.ncbi.nlm.nih.gov/39580550" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1RC38-1", "protein_name": "Phosphotransferase", "gene_name": "gck", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB32TTH1-1", "protein_name": "Endothelin receptor type B", "gene_name": "ednrba", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1RC38", "url": "https://www.uniprot.org/uniprotkb/F1RC38" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.39580550", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Zebrafish Mesp family genes, mesp-a and mesp-b are segmentally expressed in the presomitic mesoderm, and Mesp-b confers the anterior identity to the developing somites.", "journal": "Development", "date": "2000", "authors": "Sawada A, Fritz A, Jiang Y J, Yamamoto A, Yamasu K, Kuroiwa A, Saga Y, Takeda H", "reference": { "type": "PubMed", "id": "10725245", "url": "https://pubmed.ncbi.nlm.nih.gov/10725245" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1RCH4-1", "protein_name": "Neurogenic locus notch homolog protein 2 precursor", "gene_name": "notch2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1P773-1", "protein_name": "Protocadherin-8", "gene_name": "pcdh8.1", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1RCH4", "url": "https://www.uniprot.org/uniprotkb/F1RCH4" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.10725245", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Two zebrafish Notch-dependent hairy/Enhancer-of-split-related genes, her6 and her4, are required to maintain the coordination of cyclic gene expression in the presomitic mesoderm.", "journal": "Development", "date": "2004", "authors": "Pasini Andrea, Jiang Yun-Jin, Wilkinson David G", "reference": { "type": "PubMed", "id": "15023930", "url": "https://pubmed.ncbi.nlm.nih.gov/15023930" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1RCH4-1", "protein_name": "Neurogenic locus notch homolog protein 2 precursor", "gene_name": "notch2", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1RCH4", "url": "https://www.uniprot.org/uniprotkb/F1RCH4" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.15023930", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Claudin-5a is essential for the functional formation of both zebrafish blood-brain barrier and blood-cerebrospinal fluid barrier.", "journal": "Fluids Barriers CNS", "date": "2022", "authors": "Li Yanyu, Wang Chunchun, Zhang Liang, Chen Bing, Mo Yuqian, Zhang Jingjing", "reference": { "type": "PubMed", "id": "35658877", "url": "https://pubmed.ncbi.nlm.nih.gov/35658877" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1RCH4-1", "protein_name": "Neurogenic locus notch homolog protein 2 precursor", "gene_name": "notch2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1PBT2-1", "protein_name": "Clusterin", "gene_name": "clu", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1RCH4", "url": "https://www.uniprot.org/uniprotkb/F1RCH4" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.35658877", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Defective jagged-1 signaling affects GnRH development and contributes to congenital hypogonadotropic hypogonadism.", "journal": "JCI Insight", "date": "2023", "authors": "Cotellessa Ludovica, Marelli Federica, Duminuco Paolo, Adamo Michela, Papadakis Georgios E, Bartoloni Lucia, Sato Naoko, Lang-Muritano Mariarosaria, Troendle Amineh, Dhillo Waljit S, Morelli Annamaria, Guarnieri Giulia, Pitteloud Nelly, Persani Luca, Bonomi Marco, Giacobini Paolo, Vezzoli Valeria", "reference": { "type": "PubMed", "id": "36729644", "url": "https://pubmed.ncbi.nlm.nih.gov/36729644" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1RCH4-1", "protein_name": "Neurogenic locus notch homolog protein 2 precursor", "gene_name": "notch2", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1RCH4", "url": "https://www.uniprot.org/uniprotkb/F1RCH4" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.36729644", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Interplay between autophagy and apoptosis in the development of Danio rerio follicles and the effects of a probiotic.", "journal": "Reprod. Fertil. Dev.", "date": "2013", "authors": "Gioacchini Giorgia, Dalla Valle Luisa, Benato Francesca, Fimia Gian Maria, Nardacci Roberta, Ciccosanti Fabiola, Piacentini Mauro, Borini Andrea, Carnevali Oliana", "reference": { "type": "PubMed", "id": "23195281", "url": "https://pubmed.ncbi.nlm.nih.gov/23195281" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1RCP1-1", "protein_name": "Beclin-1", "gene_name": "becn1", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1RCP1", "url": "https://www.uniprot.org/uniprotkb/F1RCP1" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.23195281", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Frodo interacts with Dishevelled to transduce Wnt signals.", "journal": "Nat. Cell Biol.", "date": "2002", "authors": "Gloy Joachim, Hikasa Hiroki, Sokol Sergei Y", "reference": { "type": "PubMed", "id": "11941372", "url": "https://pubmed.ncbi.nlm.nih.gov/11941372" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q673G8-1", "protein_name": "Dapper homolog 2", "gene_name": "dact2", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q673G8", "url": "https://www.uniprot.org/uniprotkb/Q673G8" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.11941372", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Zebrafish Dpr2 inhibits mesoderm induction by promoting degradation of nodal receptors.", "journal": "Science (New York, N.Y.)", "date": "2004-10-01", "authors": "Zhang Lixia, Zhou Hu, Su Ying, Sun Zhihui, Zhang Haiwen, Zhang Long, Zhang Yu, Ning Yuanheng, Chen Ye-Guang, Meng Anming", "reference": { "type": "PubMed", "id": "15459392", "url": "https://pubmed.ncbi.nlm.nih.gov/15459392" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q673G8-1", "protein_name": "Dapper homolog 2", "gene_name": "dact2", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q673G8", "url": "https://www.uniprot.org/uniprotkb/Q673G8" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.15459392", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Treatment with a DNA methyltransferase inhibitor feminizes zebrafish and induces long-term expression changes in the gonads.", "journal": "Epigenetics Chromatin", "date": "2017", "authors": "Ribas Laia, Vanezis Konstantinos, Imu\u00e9s Marco Antonio, Piferrer Francesc", "reference": { "type": "PubMed", "id": "29216900", "url": "https://pubmed.ncbi.nlm.nih.gov/29216900" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q673G8-1", "protein_name": "Dapper homolog 2", "gene_name": "dact2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1N337-1", "protein_name": "Fucosyltransferase", "gene_name": "fut9b.1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F6NVZ1-1", "protein_name": "Interferon alpha inducible protein 27.2", "gene_name": "ifi27.2", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q673G8", "url": "https://www.uniprot.org/uniprotkb/Q673G8" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.29216900", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Dact2 is involved in the regulation of epithelial-mesenchymal transition.", "journal": "Biochem. Biophys. Res. Commun.", "date": "2020", "authors": "Kim Dong Hee, Kim Eun Ji, Kim Do Hee, Park Seung Woo", "reference": { "type": "PubMed", "id": "31983425", "url": "https://pubmed.ncbi.nlm.nih.gov/31983425" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q673G8-1", "protein_name": "Dapper homolog 2", "gene_name": "dact2", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q673G8", "url": "https://www.uniprot.org/uniprotkb/Q673G8" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.31983425", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Comparative exome sequencing reveals novel candidate genes for retinitis pigmentosa.", "journal": "EBioMedicine", "date": "2020", "authors": "Yi Z, Ouyang J, Sun W, Li S, Xiao X, Zhang Q", "reference": { "type": "PubMed", "id": "32454406", "url": "https://pubmed.ncbi.nlm.nih.gov/32454406" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q673G8-1", "protein_name": "Dapper homolog 2", "gene_name": "dact2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5SW24-1", "protein_name": "Dapper homolog 2", "gene_name": "DACT2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43768-1", "protein_name": "Alpha-endosulfine", "gene_name": "ENSA", "tax_name": "Human" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "Q673G8", "url": "https://www.uniprot.org/uniprotkb/Q673G8" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.32454406", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Smyd5 plays pivotal roles in both primitive and definitive hematopoiesis during zebrafish embryogenesis.", "journal": "Scientific reports", "date": "2016-07-05", "authors": "Fujii Tomoaki, Tsunesumi Shin-Ichiro, Sagara Hiroshi, Munakata Miyo, Hisaki Yoshihiro, Sekiya Takao, Furukawa Yoichi, Sakamoto Kazuhiro, Watanabe Sumiko", "reference": { "type": "PubMed", "id": "27377701", "url": "https://pubmed.ncbi.nlm.nih.gov/27377701" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F1RET2-1", "protein_name": "Protein-lysine N-trimethyltransferase SMYD5", "gene_name": "smyd5", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F1RET2", "url": "https://www.uniprot.org/uniprotkb/F1RET2" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.27377701", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Evolutionary plasticity of segmentation clock networks.", "journal": "Development", "date": "2011", "authors": "Krol Aur\u00e9lie J, Roellig Daniela, Dequ\u00e9ant Mary-Lee, Tassy Olivier, Glynn Earl, Hattem Gaye, Mushegian Arcady, Oates Andrew C, Pourqui\u00e9 Olivier", "reference": { "type": "PubMed", "id": "21652651", "url": "https://pubmed.ncbi.nlm.nih.gov/21652651" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F2Z4U3-1", "protein_name": "Protein wntless homolog", "gene_name": "wls", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M3ARK1-1", "protein_name": "Bifunctional glutamate/proline--tRNA ligase", "gene_name": "eprs1", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F2Z4U3", "url": "https://www.uniprot.org/uniprotkb/F2Z4U3" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.21652651", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Distinct requirements of wls, wnt9a, wnt5b and gpc4 in regulating chondrocyte maturation and timing of endochondral ossification.", "journal": "Dev. Biol.", "date": "2017", "authors": "Ling Irving Tc, Rochard Lucie, Liao Eric C", "reference": { "type": "PubMed", "id": "27908786", "url": "https://pubmed.ncbi.nlm.nih.gov/27908786" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F2Z4U3-1", "protein_name": "Protein wntless homolog", "gene_name": "wls", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F2Z4U3", "url": "https://www.uniprot.org/uniprotkb/F2Z4U3" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.27908786", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Transcriptomics reveal an integrative role for maternal thyroid hormones during zebrafish embryogenesis.", "journal": "Sci. Rep.", "date": "2017", "authors": "Silva Nadia, Louro Bruno, Trindade Marlene, Power Deborah M, Campinho Marco A", "reference": { "type": "PubMed", "id": "29192226", "url": "https://pubmed.ncbi.nlm.nih.gov/29192226" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F2Z4U3-1", "protein_name": "Protein wntless homolog", "gene_name": "wls", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q9W6C7-1", "protein_name": "Neurogenic differentiation factor 6-B", "gene_name": "neurod6b", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F2Z4U3", "url": "https://www.uniprot.org/uniprotkb/F2Z4U3" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.29192226", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Yap induces osteoblast differentiation by modulating Bmp signalling during zebrafish caudal fin regeneration.", "journal": "J. Cell Sci.", "date": "2019", "authors": "Brand\u00e3o Ana S, Bensimon-Brito Anabela, Louren\u00e7o Raquel, Borbinha Jorge, Soares Ana Rosa, Mateus Rita, Jacinto Ant\u00f3nio", "reference": { "type": "PubMed", "id": "31636113", "url": "https://pubmed.ncbi.nlm.nih.gov/31636113" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F2Z4U3-1", "protein_name": "Protein wntless homolog", "gene_name": "wls", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1P5M7-1", "protein_name": "Bone Gla protein", "gene_name": "bglapl", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F2Z4U3", "url": "https://www.uniprot.org/uniprotkb/F2Z4U3" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.31636113", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Loss of dlx5a/dlx6a Locus Alters Non-Canonical Wnt Signaling and Meckel's Cartilage Morphology.", "journal": "Biomolecules", "date": "2023", "authors": "Yu Emily P Y, Saxena Vishal, Perin Sofia, Ekker Marc", "reference": { "type": "PubMed", "id": "37759750", "url": "https://pubmed.ncbi.nlm.nih.gov/37759750" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F2Z4U3-1", "protein_name": "Protein wntless homolog", "gene_name": "wls", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB32T5W0-1", "protein_name": "Collagen alpha-2(XI) chain isoform X1", "gene_name": "col11a2", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q98877-1", "protein_name": "Homeobox protein Dlx6a", "gene_name": "dlx6a", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F2Z4U3", "url": "https://www.uniprot.org/uniprotkb/F2Z4U3" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.37759750", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Trans-2-phenylcyclopropylamine induces nerve cells apoptosis in zebrafish mediated by depression of LSD1 activity.", "journal": "Brain Res. Bull.", "date": "2009", "authors": "Jie Zhang, Li Tan, Jia-Yun Hou, Qiu Jiang, Ping-Yao Zen, Houyan Song", "reference": { "type": "PubMed", "id": "19410636", "url": "https://pubmed.ncbi.nlm.nih.gov/19410636" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F6NIA2-1", "protein_name": "Lysine-specific histone demethylase", "gene_name": "kdm1a", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F6NIA2", "url": "https://www.uniprot.org/uniprotkb/F6NIA2" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.19410636", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "DNA demethylase activity maintains intestinal cells in an undifferentiated state following loss of APC.", "journal": "Cell", "date": "2010", "authors": "Rai Kunal, Sarkar Sharmistha, Broadbent Talmage J, Voas Matthew, Grossmann Kenneth F, Nadauld Lincoln D, Dehghanizadeh Somaye, Hagos Fanuel T, Li Yumei, Toth Rachel K, Chidester Stephanie, Bahr Timothy M, Johnson W Evan, Sklow Brad, Burt Randall, Cairns Bradley R, Jones David A", "reference": { "type": "PubMed", "id": "20850014", "url": "https://pubmed.ncbi.nlm.nih.gov/20850014" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F6NIA2-1", "protein_name": "Lysine-specific histone demethylase", "gene_name": "kdm1a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58G8S3-1", "protein_name": "POU domain protein", "gene_name": "pou2f1a", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F6NIA2", "url": "https://www.uniprot.org/uniprotkb/F6NIA2" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.20850014", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Trans-2-phenylcyclopropylamine regulates zebrafish lateral line neuromast development mediated by depression of LSD1 activity.", "journal": "Int. J. Dev. Biol.", "date": "2013", "authors": "He Yingzi, Yu Huiqian, Sun Shan, Wang Yunfeng, Liu Iman, Chen Zhengyi, Li Huawei", "reference": { "type": "PubMed", "id": "23873368", "url": "https://pubmed.ncbi.nlm.nih.gov/23873368" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F6NIA2-1", "protein_name": "Lysine-specific histone demethylase", "gene_name": "kdm1a", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F6NIA2", "url": "https://www.uniprot.org/uniprotkb/F6NIA2" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.23873368", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Gfi1aa/Lsd1 Facilitates Hemangioblast Differentiation Into Primitive Erythrocytes by Targeting etv2 and sox7 in Zebrafish.", "journal": "Front. Cell Dev. Biol.", "date": "2021", "authors": "Wu Mei, Chen Qi, Li Jing, Xu Yue, Lian Junwei, Liu Yongxiang, Meng Ping, Zhang Yiyue", "reference": { "type": "PubMed", "id": "35096818", "url": "https://pubmed.ncbi.nlm.nih.gov/35096818" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F6NIA2-1", "protein_name": "Lysine-specific histone demethylase", "gene_name": "kdm1a", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F6NIA2", "url": "https://www.uniprot.org/uniprotkb/F6NIA2" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.35096818", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The scaffolding function of LSD1/KDM1A reinforces a negative feedback loop to repress stem cell gene expression during primitive hematopoiesis.", "journal": "IScience", "date": "2022", "authors": "Casey Mattie J, Call Alexandra M, Thorpe Annika V, Jette Cicely A, Engel Michael E, Stewart Rodney A", "reference": { "type": "PubMed", "id": "36594016", "url": "https://pubmed.ncbi.nlm.nih.gov/36594016" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F6NIA2-1", "protein_name": "Lysine-specific histone demethylase", "gene_name": "kdm1a", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F6NIA2", "url": "https://www.uniprot.org/uniprotkb/F6NIA2" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.36594016", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "LSD1 promotes the egress of hematopoietic stem and progenitor cells into the bloodstream during the endothelial-to-hematopoietic transition.", "journal": "Dev. Biol.", "date": "2023", "authors": "Tamaoki Junya, Maeda Hiroki, Kobayashi Isao, Takeuchi Miki, Ohashi Ken, Gore Aniket, Bonkhofer Florian, Patient Roger, Weinstein Brant M, Kobayashi Makoto", "reference": { "type": "PubMed", "id": "37353106", "url": "https://pubmed.ncbi.nlm.nih.gov/37353106" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F6NIA2-1", "protein_name": "Lysine-specific histone demethylase", "gene_name": "kdm1a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M1NGH6-1", "protein_name": "Endothelial cell adhesion molecule a isoform X1; Endothelial cell adhesion molecule a precursor", "gene_name": "esama", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QD30-1", "protein_name": "Endothelial transcription factor GATA-2b", "gene_name": "gata2b", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F6NIA2", "url": "https://www.uniprot.org/uniprotkb/F6NIA2" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.37353106", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Human split hand/foot variants are not as functional as wildtype human PRDM1 in the rescue of craniofacial defects.", "journal": "Birth Defects Res.", "date": "2024", "authors": "Truong Brittany T, Shull Lomeli C, Zepeda Bryan J, Lencer Ezra, Artinger Kristin B", "reference": { "type": "PubMed", "id": "38456586", "url": "https://pubmed.ncbi.nlm.nih.gov/38456586" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P50574-1", "protein_name": "Homeobox protein Dlx2a", "gene_name": "dlx2a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "O75626-1", "protein_name": "PR domain zinc finger protein 1", "gene_name": "PRDM1", "tax_name": "Human" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "P50574", "url": "https://www.uniprot.org/uniprotkb/P50574" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.38456586", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Combinatorial expression of three zebrafish genes related to distal-less: part of a homeobox gene code for the head.", "journal": "J. Neurosci.", "date": "1994", "authors": "Akimenko M A, Ekker M, Wegner J, Lin W, Westerfield M", "reference": { "type": "PubMed", "id": "7911517", "url": "https://pubmed.ncbi.nlm.nih.gov/7911517" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P50574-1", "protein_name": "Homeobox protein Dlx2a", "gene_name": "dlx2a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "P50576-1", "protein_name": "Homeobox protein Dlx5a", "gene_name": "dlx5a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q01702-1", "protein_name": "Homeobox protein Dlx3b", "gene_name": "dlx3b", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "P50574", "url": "https://www.uniprot.org/uniprotkb/P50574" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.7911517", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The chinless mutation and neural crest cell interactions in zebrafish jaw development.", "journal": "Development", "date": "1996", "authors": "Schilling T F, Walker C, Kimmel C B", "reference": { "type": "PubMed", "id": "8625830", "url": "https://pubmed.ncbi.nlm.nih.gov/8625830" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P50574-1", "protein_name": "Homeobox protein Dlx2a", "gene_name": "dlx2a", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "P50574", "url": "https://www.uniprot.org/uniprotkb/P50574" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.8625830", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Ectopic expression of Hoxa-1 in the zebrafish alters the fate of the mandibular arch neural crest and phenocopies a retinoic acid-induced phenotype.", "journal": "Development", "date": "1996", "authors": "Alexandre D, Clarke J D, Oxtoby E, Yan Y L, Jowett T, Holder N", "reference": { "type": "PubMed", "id": "8631251", "url": "https://pubmed.ncbi.nlm.nih.gov/8631251" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P50574-1", "protein_name": "Homeobox protein Dlx2a", "gene_name": "dlx2a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q90423-1", "protein_name": "Homeobox protein Hox-B1b", "gene_name": "hoxb1b", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "P50574", "url": "https://www.uniprot.org/uniprotkb/P50574" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.8631251", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Hypomorphic mutations in TRNT1 cause retinitis pigmentosa with erythrocytic microcytosis.", "journal": "Human molecular genetics", "date": "2016", "authors": "DeLuca AP, Whitmore SS, Barnes J, Sharma TP, Westfall TA, Scott CA, Weed MC, Wiley JS, Wiley LA, Johnston RM, Schnieders MJ, Lentz SR, Tucker BA, Mullins RF, Scheetz TE, Stone EM, Slusarski DC", "reference": { "type": "PubMed", "id": "26494905", "url": "https://pubmed.ncbi.nlm.nih.gov/26494905" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F6NXI9-1", "protein_name": "CCA tRNA nucleotidyltransferase 1, mitochondrial", "gene_name": "trnt1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q96Q11-1", "protein_name": "CCA tRNA nucleotidyltransferase 1, mitochondrial", "gene_name": "TRNT1", "tax_name": "Human" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F6NXI9", "url": "https://www.uniprot.org/uniprotkb/F6NXI9" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.26494905", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Aberrant tRNA processing causes an autoinflammatory syndrome responsive to TNF inhibitors.", "journal": "Ann. Rheum. Dis.", "date": "2018", "authors": "Giannelou Angeliki, Wang Hongying, Zhou Qing, Park Yong Hwan, Abu-Asab Mones S, Ylaya Kris, Stone Deborah L, Sediva Anna, Sleiman Rola, Sramkova Lucie, Bhatla Deepika, Serti Elisavet, Tsai Wanxia Li, Yang Dan, Bishop Kevin, Carrington Blake, Pei Wuhong, Deuitch Natalie, Brooks Stephen, Edwan Jehad H, Joshi Sarita, Prader Seraina, Kaiser Daniela, Owen William C, Sonbul Abdullah Al, Zhang Yu, Niemela Julie E, Burgess Shawn M, Boehm Manfred, Rehermann Barbara, Chae JaeJin, Quezado Martha M, Ombrello Amanda K, Buckley Rebecca H, Grom Alexi A, Remmers Elaine F, Pachlopnik Jana M, Su Helen C, Gutierrez-Cruz Gustavo, Hewitt Stephen M, Sood Raman, Risma Kimberly, Calvo Katherine R, Rosenzweig Sergio D, Gadina Massimo, Hafner Markus, Sun Hong-Wei, Kastner Daniel L, Aksentijevich Ivona", "reference": { "type": "PubMed", "id": "29358286", "url": "https://pubmed.ncbi.nlm.nih.gov/29358286" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F6NXI9-1", "protein_name": "CCA tRNA nucleotidyltransferase 1, mitochondrial", "gene_name": "trnt1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q96Q11-1", "protein_name": "CCA tRNA nucleotidyltransferase 1, mitochondrial", "gene_name": "TRNT1", "tax_name": "Human" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F6NXI9", "url": "https://www.uniprot.org/uniprotkb/F6NXI9" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.29358286", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The crypt neurons in the olfactory epithelium of the adult zebrafish express TrkA-like immunoreactivity.", "journal": "Neurosci. Lett.", "date": "2003", "authors": "Catania S, German\u00e0 A, Laur\u00e0 R, Gonzalez-Martinez T, Ciriaco E, Vega J A", "reference": { "type": "PubMed", "id": "12962904", "url": "https://pubmed.ncbi.nlm.nih.gov/12962904" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F6P1M3-1", "protein_name": "Tyrosine-protein kinase receptor", "gene_name": "ntrk1", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F6P1M3", "url": "https://www.uniprot.org/uniprotkb/F6P1M3" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.12962904", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Neurotrophin receptors in taste buds of adult zebrafish (Danio rerio).", "journal": "Neurosci. Lett.", "date": "2004", "authors": "Germana A, Gonz\u00e1lez-Mart\u00ednez T, Catania S, Laura R, Cobo J, Ciriaco E, Vega J A", "reference": { "type": "PubMed", "id": "14700728", "url": "https://pubmed.ncbi.nlm.nih.gov/14700728" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F6P1M3-1", "protein_name": "Tyrosine-protein kinase receptor", "gene_name": "ntrk1", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F6P1M3", "url": "https://www.uniprot.org/uniprotkb/F6P1M3" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.14700728", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Panax ginseng (Korea Red Ginseng) repairs diabetic sensorineural damage through promotion of the nerve growth factor pathway in diabetic zebrafish.", "journal": "J. Ginseng Res.", "date": "2019", "authors": "Nam Youn Hee, Moon Hyo Won, Lee Yeong Ro, Kim Eun Young, Rodriguez Isabel, Jeong Seo Yule, Casta\u00f1eda Rodrigo, Park Ji-Ho, Choung Se-Young, Hong Bin Na, Kang Tong Ho", "reference": { "type": "PubMed", "id": "30976165", "url": "https://pubmed.ncbi.nlm.nih.gov/30976165" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F6P1M3-1", "protein_name": "Tyrosine-protein kinase receptor", "gene_name": "ntrk1", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F6P1M3", "url": "https://www.uniprot.org/uniprotkb/F6P1M3" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.30976165", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Expression of the neurotrophic tyrosine kinase receptors, ntrk1 and ntrk2a, precedes expression of other ntrk genes in embryonic zebrafish.", "journal": "PeerJ", "date": "2020", "authors": "Hahn Katie, Manuel Paul, Bouldin Cortney", "reference": { "type": "PubMed", "id": "33391871", "url": "https://pubmed.ncbi.nlm.nih.gov/33391871" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F6P1M3-1", "protein_name": "Tyrosine-protein kinase receptor", "gene_name": "ntrk1", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F6P1M3", "url": "https://www.uniprot.org/uniprotkb/F6P1M3" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.33391871", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Intravitreal Administration of rhNGF Enhances Regenerative Processes in a Zebrafish Model of Retinal Degeneration.", "journal": "Front. Pharmacol.", "date": "2022", "authors": "Cocchiaro Pasquale, Di Donato Vincenzo, Rubbini Davide, Mastropasqua Rodolfo, Allegretti Marcello, Mantelli Flavio, Aramini Andrea, Brandolini Laura", "reference": { "type": "PubMed", "id": "35330834", "url": "https://pubmed.ncbi.nlm.nih.gov/35330834" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F6P1M3-1", "protein_name": "Tyrosine-protein kinase receptor", "gene_name": "ntrk1", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F6P1M3", "url": "https://www.uniprot.org/uniprotkb/F6P1M3" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.35330834", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Cartilage ultrastructure in proteoglycan-deficient zebrafish mutants brings to light new candidate genes for human skeletal disorders.", "journal": "J. Pathol.", "date": "2011", "authors": "Wiweger Malgorzata I, Avramut Cristina M, de Andrea Carlos E, Prins Frans A, Koster Abraham J, Ravelli Raimond B G, Hogendoorn Pancras C W", "reference": { "type": "PubMed", "id": "21294126", "url": "https://pubmed.ncbi.nlm.nih.gov/21294126" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F8W289-1", "protein_name": "Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase", "gene_name": "b3gat3", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F8W289", "url": "https://www.uniprot.org/uniprotkb/F8W289" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.21294126", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Growth plate regulation and osteochondroma formation: insights from tracing proteoglycans in zebrafish models and human cartilage.", "journal": "J. Pathol.", "date": "2011", "authors": "de Andrea Carlos E, Prins Frans A, Wiweger Malgorzata I, Hogendoorn Pancras C W", "reference": { "type": "PubMed", "id": "21506131", "url": "https://pubmed.ncbi.nlm.nih.gov/21506131" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F8W289-1", "protein_name": "Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase", "gene_name": "b3gat3", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F8W289", "url": "https://www.uniprot.org/uniprotkb/F8W289" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.21506131", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Hace1 controls ROS generation of vertebrate Rac1-dependent NADPH oxidase complexes.", "journal": "Nat. Commun.", "date": "2013", "authors": "Daugaard M, Nitsch R, Razaghi B, McDonald L, Jarrar A, Torrino S, Castillo-Lluva S, Rotblat B, Li L, Malliri A, Lemichez E, Mettouchi A, Berman JN, Penninger JM, Sorensen PH", "reference": { "type": "PubMed", "id": "23864022", "url": "https://pubmed.ncbi.nlm.nih.gov/23864022" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F8W2M1-1", "protein_name": "E3 ubiquitin-protein ligase HACE1", "gene_name": "hace1", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q3U0D9-1", "protein_name": "E3 ubiquitin-protein ligase HACE1", "gene_name": "Hace1", "tax_name": "Mouse" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F8W2M1", "url": "https://www.uniprot.org/uniprotkb/F8W2M1" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.23864022", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A rapid and effective method for screening, sequencing and reporter verification of engineered frameshift mutations in zebrafish.", "journal": "Dis. Model. Mech.", "date": "2017", "authors": "Prykhozhij Sergey V, Steele Shelby L, Razaghi Babak, Berman Jason N", "reference": { "type": "PubMed", "id": "28280001", "url": "https://pubmed.ncbi.nlm.nih.gov/28280001" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F8W2M1-1", "protein_name": "E3 ubiquitin-protein ligase HACE1", "gene_name": "hace1", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F8W2M1", "url": "https://www.uniprot.org/uniprotkb/F8W2M1" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.28280001", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "hace1 Influences zebrafish cardiac development via ROS-dependent mechanisms.", "journal": "Dev. Dyn.", "date": "2018", "authors": "Razaghi Babak, Steele Shelby L, Prykhozhij Sergey V, Stoyek Matthew R, Hill Jessica A, Cooper Matthew D, McDonald Lindsay, Lin William, Daugaard Mads, Crapoulet Nicolas, Chacko Simi, Lewis Stephen M, Scott Ian C, Sorensen Poul H B, Berman Jason N", "reference": { "type": "PubMed", "id": "29024245", "url": "https://pubmed.ncbi.nlm.nih.gov/29024245" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F8W2M1-1", "protein_name": "E3 ubiquitin-protein ligase HACE1", "gene_name": "hace1", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F8W2M1", "url": "https://www.uniprot.org/uniprotkb/F8W2M1" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.29024245", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Cloning and characterization of replication protein A p32 complementary DNA in zebrafish (Danio rerio).", "journal": "Mar. Biotechnol.", "date": "2002", "authors": "Lee Jae-Seong, Lee Yong-Sung", "reference": { "type": "PubMed", "id": "14961282", "url": "https://pubmed.ncbi.nlm.nih.gov/14961282" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F8W3R9-1", "protein_name": "ALK tyrosine kinase receptor", "gene_name": "alk", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F8W3R9", "url": "https://www.uniprot.org/uniprotkb/F8W3R9" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.14961282", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Anaplastic lymphoma kinase is required for neurogenesis in the developing central nervous system of zebrafish.", "journal": "PloS one", "date": "2013", "authors": "Yao Sheng, Cheng Mangeng, Zhang Qian, Wasik Mariusz, Kelsh Robert, Winkler Christoph", "reference": { "type": "PubMed", "id": "23667670", "url": "https://pubmed.ncbi.nlm.nih.gov/23667670" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F8W3R9-1", "protein_name": "ALK tyrosine kinase receptor", "gene_name": "alk", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F8W3R9", "url": "https://www.uniprot.org/uniprotkb/F8W3R9" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.23667670", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A Rapid Method for Directed Gene Knockout for Screening in G0 Zebrafish.", "journal": "Dev. Cell", "date": "2018", "authors": "Wu Roland S, Lam Ian I, Clay Hilary, Duong Daniel N, Deo Rahul C, Coughlin Shaun R", "reference": { "type": "PubMed", "id": "29974860", "url": "https://pubmed.ncbi.nlm.nih.gov/29974860" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F8W3R9-1", "protein_name": "ALK tyrosine kinase receptor", "gene_name": "alk", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F8W3R9", "url": "https://www.uniprot.org/uniprotkb/F8W3R9" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.29974860", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Role of melanocortin receptor accessory proteins in the function of zebrafish melanocortin receptor type 2.", "journal": "Mol. Cell. Endocrinol.", "date": "2010", "authors": "Agulleiro Maria Josep, Roy Simon, S\u00e1nchez Elisa, Puchol Sara, Gallo-Payet Nicole, Cerd\u00e1-Reverter Jos\u00e9 Miguel", "reference": { "type": "PubMed", "id": "20138960", "url": "https://pubmed.ncbi.nlm.nih.gov/20138960" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F8W4H9-1", "protein_name": "Melanocortin-2 receptor accessory protein 2A", "gene_name": "mrap2a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB13AAB4-1", "protein_name": "Melanocortin-2 receptor accessory protein", "gene_name": "mrap", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F8W4H9", "url": "https://www.uniprot.org/uniprotkb/F8W4H9" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.20138960", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Functional expression of frog and rainbow trout melanocortin 2 receptors using heterologous MRAP1s.", "journal": "Gen. Comp. Endocrinol.", "date": "2011", "authors": "Liang Liang, Sebag Julien A, Eagelston Lauren, Serasinghe Madhavika N, Veo Kristopher, Reinick Christina, Angleson Joseph, Hinkle Patricia M, Dores Robert M", "reference": { "type": "PubMed", "id": "21846469", "url": "https://pubmed.ncbi.nlm.nih.gov/21846469" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F8W4H9-1", "protein_name": "Melanocortin-2 receptor accessory protein 2A", "gene_name": "mrap2a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB13AAB4-1", "protein_name": "Melanocortin-2 receptor accessory protein", "gene_name": "mrap", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F8W4H9", "url": "https://www.uniprot.org/uniprotkb/F8W4H9" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.21846469", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Melanocortin 4 receptor becomes an ACTH receptor by coexpression of melanocortin receptor accessory protein 2.", "journal": "Mol. Endocrinol.", "date": "2013", "authors": "Josep Agulleiro Maria, Cort\u00e9s Ra\u00fal, Fern\u00e1ndez-Dur\u00e1n Bego\u00f1a, Navarro Sandra, Guillot Ra\u00fal, Meimaridou Eirini, Clark Adrian J L, Cerd\u00e1-Reverter Jos\u00e9 Miguel", "reference": { "type": "PubMed", "id": "24085819", "url": "https://pubmed.ncbi.nlm.nih.gov/24085819" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F8W4H9-1", "protein_name": "Melanocortin-2 receptor accessory protein 2A", "gene_name": "mrap2a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AB13AAB4-1", "protein_name": "Melanocortin-2 receptor accessory protein", "gene_name": "mrap", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F8W4H9", "url": "https://www.uniprot.org/uniprotkb/F8W4H9" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.24085819", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Melanocortin receptor accessory protein 2 (MRAP2) interplays with the zebrafish melanocortin 1 receptor (MC1R) but has no effect on its pharmacological profile.", "journal": "Gen. Comp. Endocrinol.", "date": "2014", "authors": "Cort\u00e9s Ra\u00fal, Agulleiro Maria Josep, Navarro Sandra, Guillot Ra\u00fal, S\u00e1nchez Elisa, Cerd\u00e1-Reverter Jos\u00e9 Miguel", "reference": { "type": "PubMed", "id": "24709359", "url": "https://pubmed.ncbi.nlm.nih.gov/24709359" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F8W4H9-1", "protein_name": "Melanocortin-2 receptor accessory protein 2A", "gene_name": "mrap2a", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F8W4H9", "url": "https://www.uniprot.org/uniprotkb/F8W4H9" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.24709359", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Cortisol disruption and transgenerational alteration in the expression of stress-related genes in zebrafish larvae following fluoxetine exposure.", "journal": "Toxicol. Appl. Pharmacol.", "date": "2019", "authors": "Vera-Chang Marilyn N, Moon Thomas W, Trudeau Vance L", "reference": { "type": "PubMed", "id": "31476325", "url": "https://pubmed.ncbi.nlm.nih.gov/31476325" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F8W4H9-1", "protein_name": "Melanocortin-2 receptor accessory protein 2A", "gene_name": "mrap2a", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F8W4H9", "url": "https://www.uniprot.org/uniprotkb/F8W4H9" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.31476325", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Elucidation of the dimeric interplay of dual MRAP2 proteins in the zebrafish.", "journal": "J. Cell. Physiol.", "date": "2021", "authors": "Wang Meng, Zhai Yue, Lu Liumei, Zhang Cong, Li Na, Xue Song, Cheng Daofu, Fu Shaliu, Liu Qi, Zhang Chao", "reference": { "type": "PubMed", "id": "33559170", "url": "https://pubmed.ncbi.nlm.nih.gov/33559170" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F8W4H9-1", "protein_name": "Melanocortin-2 receptor accessory protein 2A", "gene_name": "mrap2a", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F8W4H9", "url": "https://www.uniprot.org/uniprotkb/F8W4H9" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.33559170", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Reversion of MRAP2 Protein Sequence Generates a Functional Novel Pharmacological Modulator for MC4R Signaling.", "journal": "Biology", "date": "2022", "authors": "Xu Jing, Wang Meng, Fu Yanbin, Zhang Cong, Kuang Zhe, Bian Shan, Wan Rui, Qu Shen, Zhang Chao", "reference": { "type": "PubMed", "id": "35741395", "url": "https://pubmed.ncbi.nlm.nih.gov/35741395" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F8W4H9-1", "protein_name": "Melanocortin-2 receptor accessory protein 2A", "gene_name": "mrap2a", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F8W4H9", "url": "https://www.uniprot.org/uniprotkb/F8W4H9" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.35741395", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "MRAP2a Binds and Modulates Activity and Localisation of Prokineticin Receptor 1 in Zebrafish.", "journal": "International journal of molecular sciences", "date": "2024-07-17", "authors": "Fullone Maria Rosaria, Maftei Daniela, Vincenzi Martina, Lattanzi Roberta, Miele Rossella", "reference": { "type": "PubMed", "id": "39063058", "url": "https://pubmed.ncbi.nlm.nih.gov/39063058" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "F8W4H9-1", "protein_name": "Melanocortin-2 receptor accessory protein 2A", "gene_name": "mrap2a", "tax_name": "Zebrafish" }, { "uniprot_canonical_ac": "E9QIX7-1", "protein_name": "Pleckstrin homology domain-containing family O member 1b", "gene_name": "plekho1b", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "F8W4H9", "url": "https://www.uniprot.org/uniprotkb/F8W4H9" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.39063058", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Identification and functional characterization of zebrafish solute carrier Slc16a2 (Mct8) as a thyroid hormone membrane transporter.", "journal": "Endocrinology", "date": "2011-12", "authors": "Arjona Francisco J, de Vrieze Erik, Visser Theo J, Flik Gert, Klaren Peter H M", "reference": { "type": "PubMed", "id": "21952246", "url": "https://pubmed.ncbi.nlm.nih.gov/21952246" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "G8XYX6-1", "protein_name": "Monocarboxylate transporter 8", "gene_name": "slc16a2", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "G8XYX6", "url": "https://www.uniprot.org/uniprotkb/G8XYX6" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.21952246", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Zebrafish as a model for monocarboxyl transporter 8-deficiency.", "journal": "The Journal of biological chemistry", "date": "2013-01-04", "authors": "Vatine Gad David, Zada David, Lerer-Goldshtein Tali, Tovin Adi, Malkinson Guy, Yaniv Karina, Appelbaum Lior", "reference": { "type": "PubMed", "id": "23161551", "url": "https://pubmed.ncbi.nlm.nih.gov/23161551" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "G8XYX6-1", "protein_name": "Monocarboxylate transporter 8", "gene_name": "slc16a2", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "G8XYX6", "url": "https://www.uniprot.org/uniprotkb/G8XYX6" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.23161551", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Maternal thyroid hormones are essential for neural development in zebrafish.", "journal": "Molecular endocrinology (Baltimore, Md.)", "date": "2014-07", "authors": "Campinho Marco A, Saraiva Jo\u00e3o, Florindo Claudia, Power Deborah M", "reference": { "type": "PubMed", "id": "24877564", "url": "https://pubmed.ncbi.nlm.nih.gov/24877564" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "G8XYX6-1", "protein_name": "Monocarboxylate transporter 8", "gene_name": "slc16a2", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "G8XYX6", "url": "https://www.uniprot.org/uniprotkb/G8XYX6" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.24877564", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Bucky ball organizes germ plasm assembly in zebrafish.", "journal": "Current biology : CB", "date": "2009-03-10", "authors": "Bontems Franck, Stein Amandine, Marlow Florence, Lyautey Jacqueline, Gupta Tripti, Mullins Mary C, Dosch Roland", "reference": { "type": "PubMed", "id": "19249209", "url": "https://pubmed.ncbi.nlm.nih.gov/19249209" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "H0WFA5-1", "protein_name": "Bucky ball", "gene_name": "buc", "tax_name": "Zebrafish" } ], "species": [ { "name": "Danio rerio", "taxid": 7955, "evidence": [ { "database": "UniProtKB", "id": "H0WFA5", "url": "https://www.uniprot.org/uniprotkb/H0WFA5" } ], "common_name": "Zebrafish", "glygen_name": "Zebrafish", "reference_species": "Danio rerio [7955]" } ], "record_id": "pubmed.19249209", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] } ]