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transcription-coupled repair.", "journal": "PLoS genetics", "date": "2009-02", "authors": "Gaillard H\u00e9l\u00e8ne, Tous Cristina, Botet Javier, Gonz\u00e1lez-Aguilera Cristina, Quintero Maria Jos\u00e9, Viladevall Laia, Garc\u00eda-Rubio Mar\u00eda L, Rodr\u00edguez-Gil Alfonso, Mar\u00edn Antonio, Ari\u00f1o Joaqu\u00edn, Revuelta Jos\u00e9 Luis, Ch\u00e1vez Sebasti\u00e1n, Aguilera Andr\u00e9s", "reference": { "type": "PubMed", "id": "19197357", "url": "https://pubmed.ncbi.nlm.nih.gov/19197357" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q12132-1", "protein_name": "Nutrient and stress factor 1", "gene_name": "USV1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "Q12132", "url": "https://www.uniprot.org/uniprotkb/Q12132" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C 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W", "reference": { "type": "PubMed", "id": "9171100", "url": "https://pubmed.ncbi.nlm.nih.gov/9171100" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q12132-1", "protein_name": "Nutrient and stress factor 1", "gene_name": "USV1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12139-1", "protein_name": "Zinc finger protein YPR022C", "gene_name": "", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12145-1", "protein_name": "Zinc finger protein CRM3", "gene_name": "CMR3", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12531-1", "protein_name": "Zinc finger protein YPR015C", "gene_name": "LPZ14c", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q00947-1", "protein_name": "Transcription factor STP1", "gene_name": "STP1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q03833-1", "protein_name": "Transcriptional activator/repressor GIS1", "gene_name": "GIS1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q08004-1", "protein_name": "Bud site selection protein 20", "gene_name": "BUD20", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38344-1", "protein_name": "Cytoplasmic 60S subunit biogenesis factor REI1", "gene_name": "REI1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38704-1", "protein_name": "Transcription factor STP2", "gene_name": "STP2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P39956-1", "protein_name": "DNA damage-responsive transcriptional repressor RPH1", "gene_name": "RPH1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P46974-1", "protein_name": "Respiration factor 2", "gene_name": "RSF2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q06709-1", "protein_name": "Cytoplasmic 60S subunit biogenesis factor REH1", "gene_name": "REH1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q04311-1", "protein_name": "tRNA endonuclease VMS1", "gene_name": "VMS1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38890-1", "protein_name": "Histone-lysine N-methyltransferase SET5", "gene_name": "SET5", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "Q12132", "url": "https://www.uniprot.org/uniprotkb/Q12132" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.9171100", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 14 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { 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"total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": 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"total", "count": 12 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", 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Cell Biol.", "date": "2010", "authors": "Chadrin Anne, Hess Barbara, San Roman Mabel, Gatti Xavier, Lombard B\u00e9rang\u00e8re, Loew Damarys, Barral Yves, Palancade Benoit, Doye Val\u00e9rie", "reference": { "type": "PubMed", "id": "20498018", "url": "https://pubmed.ncbi.nlm.nih.gov/20498018" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q12144-1", "protein_name": "Pore and endoplasmic reticulum protein of 33 kDa", "gene_name": "PER33", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q04947-1", "protein_name": "Reticulon-like protein 1", "gene_name": "RTN1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12164-1", "protein_name": "Pore membrane protein of 33 kDa", "gene_name": "POM33", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "Q12144", "url": "https://www.uniprot.org/uniprotkb/Q12144" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.20498018", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", 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"date": "2021-04-15", "authors": "Laborenz Janina, Bykov Yury S, Kn\u00f6ringer Katharina, R\u00e4schle Markus, Filker Sabine, Prescianotto-Baschong Cristina, Spang Anne, Tatsuta Takashi, Langer Thomas, Storchov\u00e1 Zuzana, Schuldiner Maya, Herrmann Johannes M", "reference": { "type": "PubMed", "id": "33596095", "url": "https://pubmed.ncbi.nlm.nih.gov/33596095" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q12155-1", "protein_name": "Efficient mitochondria targeting-associated protein 19", "gene_name": "EMA19", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "Q12155", "url": "https://www.uniprot.org/uniprotkb/Q12155" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.33596095", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], 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Repressive Effects.", "journal": "Membranes", "date": "2021-06-30", "authors": "Galez Henri A, Roelants Fran\u00e7oise M, Palm Sarah M, Reynaud Kendra K, Ingolia Nicholas T, Thorner Jeremy", "reference": { "type": "PubMed", "id": "34209236", "url": "https://pubmed.ncbi.nlm.nih.gov/34209236" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q12221-1", "protein_name": "mRNA-binding protein PUF2", "gene_name": "PUF2", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "Q12221", "url": "https://www.uniprot.org/uniprotkb/Q12221" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "phosphorylation": [ { "start_pos": 143, "end_pos": 143, "kinase_uniprot_canonical_ac": "", "kinase_gene_name": "", "residue": "Thr", "comment": "", "evidence": [ { "database": "SGD", "id": "S000006246", 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fungi.", "journal": "Microbiology (Reading, England)", "date": "2005-02", "authors": "Tokai Takeshi, Fujimura Makoto, Inoue Hirokazu, Aoki Takayuki, Ohta Kunihiro, Shibata Takehiko, Yamaguchi Isamu, Kimura Makoto", "reference": { "type": "PubMed", "id": "15699200", "url": "https://pubmed.ncbi.nlm.nih.gov/15699200" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q12226-1", "protein_name": "Trichothecene 3-O-acetyltransferase", "gene_name": "AYT1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "Q12226", "url": "https://www.uniprot.org/uniprotkb/Q12226" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.15699200", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": 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Biol. Chem.", "date": "1999", "authors": "Spinelli S L, Kierzek R, Turner D H, Phizicky E M", "reference": { "type": "PubMed", "id": "9915792", "url": "https://pubmed.ncbi.nlm.nih.gov/9915792" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q12272-1", "protein_name": "tRNA 2'-phosphotransferase", "gene_name": "TPT1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "Q12272", "url": "https://www.uniprot.org/uniprotkb/Q12272" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.9915792", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", 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Bacteriol.", "date": "1999", "authors": "Hamada K, Terashima H, Arisawa M, Yabuki N, Kitada K", "reference": { "type": "PubMed", "id": "10383953", "url": "https://pubmed.ncbi.nlm.nih.gov/10383953" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q12282-1", "protein_name": "Sorulation-regulated protein 2", "gene_name": "SPR2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P53872-1", "protein_name": "Hydrophilin YNL190W", "gene_name": "N1415", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q04433-1", "protein_name": "Facilitator of iron transport 1", "gene_name": "FIT1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12355-1", "protein_name": "Cell wall mannoprotein PST1", "gene_name": "PST1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38248-1", "protein_name": "Cell wall protein ECM33", "gene_name": "ECM33", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P39105-1", "protein_name": 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"A-factor barrier protein 1", "gene_name": "AFB1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q07990-1", "protein_name": "Cell wall protein YLR042C", "gene_name": "", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q08271-1", "protein_name": "1,3-beta-glucanosyltransferase GAS4", "gene_name": "GAS4", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q08906-1", "protein_name": "Facilitator of iron transport 2", "gene_name": "FIT2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q08907-1", "protein_name": "Facilitator of iron transport 3", "gene_name": "FIT3", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12218-1", "protein_name": "Cell wall protein TIR4", "gene_name": "TIR4", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P08640-1", "protein_name": "Flocculation protein FLO11", "gene_name": "FLO11", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "Q12282", "url": "https://www.uniprot.org/uniprotkb/Q12282" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.10383953", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 19 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": 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[] } ] }, { "title": "Transcriptional regulation of sporulation genes in yeast.", "journal": "Mol. Gen. Genet.", "date": "1987", "authors": "Holaway B L, Kao G, Finn M C, Clancy M J", "reference": { "type": "PubMed", "id": "3323843", "url": "https://pubmed.ncbi.nlm.nih.gov/3323843" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q12282-1", "protein_name": "Sorulation-regulated protein 2", "gene_name": "SPR2", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "Q12282", "url": "https://www.uniprot.org/uniprotkb/Q12282" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.3323843", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", 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], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "SUT1 is a putative Zn[II]2Cys6-transcription factor whose upregulation enhances both sterol uptake and synthesis in aerobically growing Saccharomyces cerevisiae cells.", "journal": "European journal of biochemistry", "date": "2001-03", "authors": "Ness F, Bourot S, R\u00e9gnacq M, Spagnoli R, Berg\u00e8s T, Karst F", "reference": { "type": "PubMed", "id": "11248676", "url": "https://pubmed.ncbi.nlm.nih.gov/11248676" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q12286-1", "protein_name": "Sterol uptake protein 2", "gene_name": "SUT2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P53032-1", "protein_name": "Sterol uptake protein 1", "gene_name": "SUT1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "Q12286", "url": "https://www.uniprot.org/uniprotkb/Q12286" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.11248676", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": 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"Regulation of mating in the budding yeast Saccharomyces cerevisiae by the zinc cluster proteins Sut1 and Sut2.", "journal": "Biochemical and biophysical research communications", "date": "2013-08-16", "authors": "Blanda Claudia, H\u00f6fken Thomas", "reference": { "type": "PubMed", "id": "23872066", "url": "https://pubmed.ncbi.nlm.nih.gov/23872066" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q12286-1", "protein_name": "Sterol uptake protein 2", "gene_name": "SUT2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P53032-1", "protein_name": "Sterol uptake protein 1", "gene_name": "SUT1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "Q12286", "url": "https://www.uniprot.org/uniprotkb/Q12286" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": 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D\u00fcttmann Simon, Watzinger Peter, K\u00f6tter Peter, Entian Karl-Dieter", "reference": { "type": "PubMed", "id": "24335083", "url": "https://pubmed.ncbi.nlm.nih.gov/24335083" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q12291-1", "protein_name": "25S rRNA (uridine(2843)-N(3))-methyltransferase", "gene_name": "BMT6", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P40493-1", "protein_name": "25S rRNA (uridine(2634)-N(3))-methyltransferase", "gene_name": "BMT5", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "Q12291", "url": "https://www.uniprot.org/uniprotkb/Q12291" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "mutagenesis": [ { "start_pos": 294, "end_pos": 294, "sequence_org": "G", "sequence_mut": "R", "comment": "Abolishes methyltransferase 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Biol. Chem.", "date": "2003", "authors": "Lucau-Danila Ancuta, Delaveau Thierry, Lelandais Ga\u00eblle, Devaux Fr\u00e9d\u00e9ric, Jacq Claude", "reference": { "type": "PubMed", "id": "14512416", "url": "https://pubmed.ncbi.nlm.nih.gov/14512416" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q12298-1", "protein_name": "Uncharacterized ABC transporter ATP-binding protein YDR061W", "gene_name": "D4241", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12340-1", "protein_name": "Zinc finger transcription factor YRM1", "gene_name": "YRM1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12172-1", "protein_name": "Zinc finger transcription factor YRR1", "gene_name": "YRR1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12405-1", "protein_name": "Peroxisomal membrane protein LPX1", "gene_name": "LPX1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "Q12298", "url": "https://www.uniprot.org/uniprotkb/Q12298" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.14512416", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": 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[] } ] }, { "title": "Molecular characterization of two high affinity sulfate transporters in Saccharomyces cerevisiae.", "journal": "Genetics", "date": "1997", "authors": "Cherest H, Davidian J C, Thomas D, Benes V, Ansorge W, Surdin-Kerjan Y", "reference": { "type": "PubMed", "id": "9055073", "url": "https://pubmed.ncbi.nlm.nih.gov/9055073" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q12325-1", "protein_name": "Sulfate permease 2", "gene_name": "SUL2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38359-1", "protein_name": "Sulfate permease 1", "gene_name": "SUL1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "Q12325", "url": "https://www.uniprot.org/uniprotkb/Q12325" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.9055073", 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"n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Analysis of gene network regulating yeast multidrug resistance by artificial activation of transcription factors: involvement of Pdr3 in salt tolerance.", "journal": "Gene", "date": "2004-05-12", "authors": "Onda Miyuki, Ota Kazuhisa, Chiba 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"count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Cloning and characterization of a sulfonate/alpha-ketoglutarate dioxygenase from Saccharomyces cerevisiae.", "journal": "Journal of bacteriology", "date": "1999-09", "authors": "Hogan D A, Auchtung T A, Hausinger R P", "reference": { "type": "PubMed", "id": "10482536", "url": "https://pubmed.ncbi.nlm.nih.gov/10482536" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q12358-1", "protein_name": "Alpha-ketoglutarate-dependent sulfonate dioxygenase", "gene_name": "JLP1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "Q12358", "url": "https://www.uniprot.org/uniprotkb/Q12358" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.10482536", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", 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Cell. 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Identification of a novel protein arginine methyltransferase.", "journal": "J. Biol. Chem.", "date": "1999", "authors": "Niewmierzycka A, Clarke S", "reference": { "type": "PubMed", "id": "9873020", "url": "https://pubmed.ncbi.nlm.nih.gov/9873020" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q12367-1", "protein_name": "Ribosomal lysine N-methyltransferase 5", "gene_name": "RKM5", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q03305-1", "protein_name": "Protein arginine N-methyltransferase 2", "gene_name": "RMT2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38892-1", "protein_name": "Probable S-adenosylmethionine-dependent methyltransferase CRG1", "gene_name": "CRG1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P25627-1", "protein_name": "18S rRNA (guanine(1575)-N(7))-methyltransferase", "gene_name": "BUD23", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "Q12367", "url": 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Biol. Chem.", "date": "2005", "authors": "Porras-Yakushi Tanya R, Whitelegge Julian P, Miranda Tina Branscombe, Clarke Steven", "reference": { "type": "PubMed", "id": "16096273", "url": "https://pubmed.ncbi.nlm.nih.gov/16096273" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q12504-1", "protein_name": "Ribosomal lysine N-methyltransferase 4", "gene_name": "RKM4", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38818-1", "protein_name": "Cytochrome c lysine N-methyltransferase 1", "gene_name": "CTM1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q08961-1", "protein_name": "Ribosomal lysine N-methyltransferase 1", "gene_name": "RKM1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P0CX41-1", "protein_name": "Large ribosomal subunit protein uL14A", "gene_name": "RPL23A", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P0CX42-1", "protein_name": "Large ribosomal subunit protein uL14B", "gene_name": "RPL23B", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "Q12504", "url": "https://www.uniprot.org/uniprotkb/Q12504" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.16096273", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Identification of two SET domain proteins required for methylation of lysine residues in yeast ribosomal protein Rpl42ab.", "journal": "The Journal of biological chemistry", "date": "2008-12-19", "authors": "Webb Kristofor J, Laganowsky Arthur, Whitelegge Julian P, Clarke Steven G", "reference": { "type": "PubMed", "id": "18957409", "url": "https://pubmed.ncbi.nlm.nih.gov/18957409" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q12504-1", "protein_name": "Ribosomal lysine N-methyltransferase 4", "gene_name": "RKM4", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38222-1", "protein_name": "Ribosomal lysine N-methyltransferase 3", "gene_name": "RKM3", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q03942-1", "protein_name": "Ribosomal lysine N-methyltransferase 2", "gene_name": "RKM2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P0CX27-1", "protein_name": "Large ribosomal subunit protein eL42A", "gene_name": "RPL42A", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P0CX28-1", "protein_name": "Large ribosomal subunit protein eL42B", "gene_name": "RPL42B", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P0CX53-1", "protein_name": "Large ribosomal subunit protein uL11A", "gene_name": "RPL12A", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P0CX54-1", "protein_name": "Large ribosomal subunit protein uL11B", "gene_name": "RPL12B", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "Q12504", "url": "https://www.uniprot.org/uniprotkb/Q12504" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.18957409", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Stoichiometry of Saccharomyces cerevisiae lysine methylation: insights into non-histone protein lysine methyltransferase activity.", "journal": "Journal of proteome research", "date": "2014-03-07", "authors": "Hart-Smith Gene, Chia Samantha Z, Low Jason K K, McKay Matthew J, Molloy Mark P, Wilkins Marc R", "reference": { "type": "PubMed", "id": "24517342", "url": "https://pubmed.ncbi.nlm.nih.gov/24517342" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q12504-1", "protein_name": "Ribosomal lysine N-methyltransferase 4", "gene_name": "RKM4", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38222-1", "protein_name": "Ribosomal lysine N-methyltransferase 3", "gene_name": "RKM3", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P38347-1", "protein_name": "Protein-lysine N-methyltransferase EFM2", "gene_name": "EFM2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P40516-1", "protein_name": "Protein-lysine N-methyltransferase EFM4", "gene_name": "EFM4", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P02994-1", "protein_name": "Elongation factor 1-alpha", "gene_name": "TEF1; TEF2", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P0CX27-1", "protein_name": "Large ribosomal subunit protein eL42A", "gene_name": "RPL42A", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P0CX28-1", "protein_name": "Large ribosomal subunit protein eL42B", "gene_name": "RPL42B", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P32324-1", "protein_name": "Elongation factor 2", "gene_name": "EFT1; EFT2", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "Q12504", "url": "https://www.uniprot.org/uniprotkb/Q12504" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.24517342", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 8 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Characterization of Protein Methyltransferases Rkm1, Rkm4, Efm4, Efm7, Set5 and Hmt1 Reveals Extensive Post-Translational Modification.", "journal": "Journal of molecular biology", "date": "2018-01-05", "authors": "Winter Daniel L, Hart-Smith Gene, Wilkins Marc R", "reference": { "type": "PubMed", "id": "29183786", "url": "https://pubmed.ncbi.nlm.nih.gov/29183786" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q12504-1", "protein_name": "Ribosomal lysine 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cerevisiae.", "journal": "PloS one", "date": "2014", "authors": "Hurtado Sara, Kim Guisbert Karen S, Sontheimer Erik J", "reference": { "type": "PubMed", "id": "25127041", "url": "https://pubmed.ncbi.nlm.nih.gov/25127041" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q3E752-1", "protein_name": "Sporulation protein 24", "gene_name": "SPO24", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "Q3E752", "url": "https://www.uniprot.org/uniprotkb/Q3E752" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.25127041", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ 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Mol. Biol.", "date": "2009", "authors": "Longen Sebastian, Bien Melanie, Bihlmaier Karl, Kloeppel Christine, Kauff Frank, Hammermeister Miriam, Westermann Benedikt, Herrmann Johannes M, Riemer Jan", "reference": { "type": "PubMed", "id": "19703468", "url": "https://pubmed.ncbi.nlm.nih.gov/19703468" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q3E7A9-1", "protein_name": "Cx9C motif-containing protein 4, mitochondrial", "gene_name": "CMC4", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P36064-1", "protein_name": "COX assembly mitochondrial protein", "gene_name": "CMC1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q05809-1", "protein_name": "Cytochrome oxidase assembly factor 4", "gene_name": "COA4", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q3E7A4-1", "protein_name": "COX assembly mitochondrial protein 2", "gene_name": "CMC2", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "Q3E7A9", "url": "https://www.uniprot.org/uniprotkb/Q3E7A9" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.19703468", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Genome-wide analysis of eukaryotic twin CX9C proteins.", "journal": "Mol. Biosyst.", "date": "2010", "authors": "Cavallaro Gabriele", "reference": { "type": "PubMed", "id": "20922212", "url": "https://pubmed.ncbi.nlm.nih.gov/20922212" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q3E7A9-1", "protein_name": "Cx9C motif-containing protein 4, mitochondrial", "gene_name": "CMC4", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q3E846-1", "protein_name": "Cytochrome c oxidase assembly factor 6", "gene_name": "COA6", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "Q3E7A9", "url": "https://www.uniprot.org/uniprotkb/Q3E7A9" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.20922212", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { 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Proteomics", "date": "2015", "authors": "Becker Emmanuelle, Liu Yuchen, Lardenois Aur\u00e9lie, Walther Thomas, Horecka Joe, Stuparevic Igor, Law Michael J, Lavigne R\u00e9gis, Evrard Bertrand, Demougin Philippe, Riffle Michael, Strich Randy, Davis Ronald W, Pineau Charles, Primig Michael", "reference": { "type": "PubMed", "id": "25662576", "url": "https://pubmed.ncbi.nlm.nih.gov/25662576" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q6B0Y7-1", "protein_name": "Uncharacterized protein YMR075C-A", "gene_name": "", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "Q6B0Y7", "url": "https://www.uniprot.org/uniprotkb/Q6B0Y7" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.25662576", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], 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"Science (New York, N.Y.)", "date": "2002-03-29", "authors": "Dittmar Gunnar A G, Wilkinson Caroline R M, Jedrzejewski Paul T, Finley Daniel", "reference": { "type": "PubMed", "id": "11923536", "url": "https://pubmed.ncbi.nlm.nih.gov/11923536" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q6Q546-1", "protein_name": "Ubiquitin-like modifier HUB1", "gene_name": "HUB1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q06160-1", "protein_name": "Protein SPH1", "gene_name": "SPH1", "tax_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q07653-1", "protein_name": "Protein HBT1", "gene_name": "HBT1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "Q6Q546", "url": "https://www.uniprot.org/uniprotkb/Q6Q546" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], 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Genomics", "date": "2003", "authors": "Ramelot Theresa A, Cort John R, Yee Adelinda A, Semesi Anthony, Edwards Aled M, Arrowsmith Cheryl H, Kennedy Michael A", "reference": { "type": "PubMed", "id": "12943364", "url": "https://pubmed.ncbi.nlm.nih.gov/12943364" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q6Q546-1", "protein_name": "Ubiquitin-like modifier HUB1", "gene_name": "HUB1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "Q6Q546", "url": "https://www.uniprot.org/uniprotkb/Q6Q546" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.12943364", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", 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Cell. Biol.", "date": "2005", "authors": "Carter Carole D, Kitchen Lauren E, Au Wei-Chun, Babic Christopher M, Basrai Munira A", "reference": { "type": "PubMed", "id": "16287844", "url": "https://pubmed.ncbi.nlm.nih.gov/16287844" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q6Q5K6-1", "protein_name": "MEC1-mediated checkpoint protein HUG1", "gene_name": "HUG1", "tax_name": "Baker's yeast" } ], "species": [ { "name": "Saccharomyces cerevisiae S288C", "taxid": 559292, "evidence": [ { "database": "UniProtKB", "id": "Q6Q5K6", "url": "https://www.uniprot.org/uniprotkb/Q6Q5K6" } ], "common_name": "Baker's yeast", "glygen_name": "Yeast", "reference_species": "Saccharomyces cerevisiae S288C [559292]" } ], "record_id": "pubmed.16287844", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": 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"count": 0 } ], "sort_fields": [] } ] }, { "title": "RAD51C (RAD51L2) is involved in maintaining centrosome number in mitosis.", "journal": "Cytogenetic and genome research", "date": "2007", "authors": "Renglin Lindh A, Schultz N, Saleh-Gohari N, Helleday T", "reference": { "type": "PubMed", "id": "17268176", "url": "https://pubmed.ncbi.nlm.nih.gov/17268176" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q8R2J9-1", "protein_name": "DNA repair protein RAD51 homolog 3", "gene_name": "RAD51C", "tax_name": "Chinese hamster" } ], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "Q8R2J9", "url": "https://www.uniprot.org/uniprotkb/Q8R2J9" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "record_id": "pubmed.17268176", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], 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Biophys.", "date": "2000", "authors": "Patnaik S K, Zhang A, Shi S, Stanley P", "reference": { "type": "PubMed", "id": "10700388", "url": "https://pubmed.ncbi.nlm.nih.gov/10700388" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9JIG1-1", "protein_name": "4-galactosyl-N-acetylglucosaminide 3-alpha-L-fucosyltransferase 9", "gene_name": "FUT9", "tax_name": "Chinese hamster" } ], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "Q9JIG1", "url": "https://www.uniprot.org/uniprotkb/Q9JIG1" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "record_id": "pubmed.10700388", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Cloning and functional analysis of cDNA encoding the hamster Bcl-2 protein.", "journal": "Biochem. 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