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Ad P, Vordermeier Martin, Jervis Peter J, Cox Liam R, Graham Simon P, Santema Wiebren J, Moody D Branch, van Calenbergh Serge, Zajonc Dirk M, Besra Gurdyal S, Van Rhijn Ildiko", "reference": { "type": "PubMed", "id": "22968995", "url": "https://pubmed.ncbi.nlm.nih.gov/22968995" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A3Q1MEM2-1", "protein_name": "CD1D antigen, d polypeptide", "gene_name": "CD1D", "tax_name": "Bovine" } ], "species": [ { "name": "Bos taurus", "taxid": 9913, "evidence": [ { "database": "UniProtKB", "id": "A0A3Q1MEM2", "url": "https://www.uniprot.org/uniprotkb/A0A3Q1MEM2" } ], "common_name": "Bovine", "glygen_name": "Bovine", "reference_species": "Bos taurus [9913]" } ], "record_id": "pubmed.22968995", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": 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Geshi Masaya, Somfai Tam\u00e1s, Kaneda Masahiro, Hirako Makoto, Abdel-Ghaffar Alaa E, Sosa Gamal A, El-Roos Mahmoud E A Abou, Nagai Takashi", "reference": { "type": "PubMed", "id": "21381146", "url": "https://pubmed.ncbi.nlm.nih.gov/21381146" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "A0A3Q1MJK4-1", "protein_name": "Melatonin receptor 1B", "gene_name": "MTNR1B", "tax_name": "Bovine" }, { "uniprot_canonical_ac": "P10950-1", "protein_name": "Acetylserotonin O-methyltransferase", "gene_name": "ASMT", "tax_name": "Bovine" } ], "species": [ { "name": "Bos taurus", "taxid": 9913, "evidence": [ { "database": "UniProtKB", "id": "A0A3Q1MJK4", "url": "https://www.uniprot.org/uniprotkb/A0A3Q1MJK4" } ], "common_name": "Bovine", "glygen_name": "Bovine", "reference_species": "Bos taurus [9913]" } ], "record_id": "pubmed.21381146", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { 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[] } ] }, { "title": "Proteasomal recognition of ubiquitylated substrates.", "journal": "Trends Plant Sci.", "date": "2010", "authors": "Fu Hongyong, Lin Ya-Ling, Fatimababy A S", "reference": { "type": "PubMed", "id": "20399133", "url": "https://pubmed.ncbi.nlm.nih.gov/20399133" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O48726-1", "protein_name": "26S proteasome regulatory subunit RPN13", "gene_name": "RPN13", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SII8-1", "protein_name": "Ubiquitin domain-containing protein DSK2b", "gene_name": "DSK2B", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P55034-1", "protein_name": "26S proteasome non-ATPase regulatory subunit 4 homolog", "gene_name": "RPN10", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q84L32-1", "protein_name": "Probable ubiquitin receptor RAD23a", "gene_name": "RAD23A", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q84L31-1", 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family in Arabidopsis thaliana reveals a diversity of functions.", "journal": "The Biochemical journal", "date": "2010-01-15", "authors": "Gisk Bjoern, Yasui Yukiko, Kohchi Takayuki, Frankenberg-Dinkel Nicole", "reference": { "type": "PubMed", "id": "19860740", "url": "https://pubmed.ncbi.nlm.nih.gov/19860740" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O48782-1", "protein_name": "Heme oxygenase 1, chloroplastic", "gene_name": "HO1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O48722-1", "protein_name": "Probable inactive heme oxygenase 2, chloroplastic", "gene_name": "HO2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9C9L4-1", "protein_name": "Heme oxygenase 3, chloroplastic", "gene_name": "HO3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LQC0-1", "protein_name": "Heme oxygenase 4, chloroplastic", "gene_name": "HO4", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", 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"count": 0 } ], "sort_fields": [] } ] }, { "title": "Enzymatic ring opening of an iron corrole by plant-type heme oxygenases: unexpected substrate and protein selectivities.", "journal": "Biochemistry", "date": "2010-11-30", "authors": "Gisk Bj\u00f6rn, Br\u00e9gier Fr\u00e9d\u00e9rique, Kr\u00fcger Robin A, Br\u00f6ring Martin, Frankenberg-Dinkel Nicole", "reference": { "type": "PubMed", "id": "20979354", "url": "https://pubmed.ncbi.nlm.nih.gov/20979354" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O48782-1", "protein_name": "Heme oxygenase 1, chloroplastic", "gene_name": "HO1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O48782", "url": "https://www.uniprot.org/uniprotkb/O48782" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.20979354", "abstract": "", 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"Xie Yan-Jie, Xu Sheng, Han Bin, Wu Ming-Zhu, Yuan Xing-Xing, Han Yi, Gu Quan, Xu Dao-Kun, Yang Qing, Shen Wen-Biao", "reference": { "type": "PubMed", "id": "21205037", "url": "https://pubmed.ncbi.nlm.nih.gov/21205037" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O48782-1", "protein_name": "Heme oxygenase 1, chloroplastic", "gene_name": "HO1", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O48782", "url": "https://www.uniprot.org/uniprotkb/O48782" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.21205037", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", 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Integr. Plant Biol.", "date": "2013", "authors": "Kaur Navneet, Zhao Qingzhen, Xie Qi, Hu Jianping", "reference": { "type": "PubMed", "id": "23336935", "url": "https://pubmed.ncbi.nlm.nih.gov/23336935" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9SII8-1", "protein_name": "Ubiquitin domain-containing protein DSK2b", "gene_name": "DSK2B", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9CA86-1", "protein_name": "Peroxisome biogenesis protein 2", "gene_name": "PEX2; TED3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SII9-1", "protein_name": "Ubiquitin domain-containing protein DSK2a", "gene_name": "DSK2A", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9M841-1", "protein_name": "Peroxisome biogenesis protein 12", "gene_name": "PEX12", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SYU4-1", "protein_name": "Peroxisome biogenesis factor 10", "gene_name": "PEX10", "tax_name": "Mouse-ear cress" } ], 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Molecular characterisation of two paralogous SPO11 homologues in Arabidopsis thaliana.", "journal": "Nucleic Acids Res.", "date": "2000", "authors": "Hartung F, Puchta H", "reference": { "type": "PubMed", "id": "10710421", "url": "https://pubmed.ncbi.nlm.nih.gov/10710421" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9M4A2-1", "protein_name": "Meiotic recombination protein SPO11-1", "gene_name": "SPO11-1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9M4A1-1", "protein_name": "Meiotic recombination protein SPO11-2", "gene_name": "SPO11-2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9M4A2", "url": "https://www.uniprot.org/uniprotkb/Q9M4A2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": 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Pelletier G", "reference": { "type": "PubMed", "id": "11157765", "url": "https://pubmed.ncbi.nlm.nih.gov/11157765" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9M4A2-1", "protein_name": "Meiotic recombination protein SPO11-1", "gene_name": "SPO11-1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LZ03-1", "protein_name": "DNA topoisomerase 6 subunit A", "gene_name": "TOP6A", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9M4A2", "url": "https://www.uniprot.org/uniprotkb/Q9M4A2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.11157765", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Molecular characterization of homologues of both subunits A (SPO11) and B of the archaebacterial topoisomerase 6 in plants.", "journal": "Gene", "date": "2001", "authors": "Hartung F, Puchta H", "reference": { "type": "PubMed", "id": "11410368", "url": "https://pubmed.ncbi.nlm.nih.gov/11410368" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9M4A2-1", "protein_name": "Meiotic recombination protein SPO11-1", 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0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Arabidopsis SPO11-2 functions with SPO11-1 in meiotic recombination.", "journal": "The Plant journal : for cell and molecular biology", "date": "2006-10", "authors": "Stacey Nicola J, Kuromori Takashi, Azumi Yoshitaka, Roberts Gethin, Breuer Christian, Wada Takuji, Maxwell Anthony, Roberts Keith, Sugimoto-Shirasu Keiko", "reference": { "type": "PubMed", "id": "17018031", "url": 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"o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "AtPRD1 is required for meiotic double strand break formation in Arabidopsis thaliana.", "journal": "EMBO J.", "date": "2007", "authors": "De Muyt Arnaud, Vezon Daniel, Gendrot Ghislaine, Gallois Jean-Luc, Stevens Rebecca, Grelon Mathilde", "reference": { "type": "PubMed", "id": "17762870", "url": "https://pubmed.ncbi.nlm.nih.gov/17762870" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9M4A2-1", "protein_name": "Meiotic recombination protein SPO11-1", "gene_name": 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"uniprot_canonical_ac": "Q9M4A1-1", "protein_name": "Meiotic recombination protein SPO11-2", "gene_name": "SPO11-2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9M4A2", "url": "https://www.uniprot.org/uniprotkb/Q9M4A2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "mutagenesis": [ { "start_pos": 103, "end_pos": 103, "sequence_org": "Y", "sequence_mut": "F", "comment": "Loss of double-strand breaks induction.", "evidence": [ { "database": "UniProtKB", "id": "Q9M4A2", "url": "https://www.uniprot.org/uniprotkb/Q9M4A2" }, { "database": "PubMed", "id": "17965269", "url": "https://pubmed.ncbi.nlm.nih.gov/17965269" } ], "uniprot_canonical_ac": "Q9M4A2-1" }, { "start_pos": 124, "end_pos": 124, "sequence_org": "Y", "sequence_mut": "F", "comment": "Loss of double-strand breaks induction.", "evidence": [ { "database": 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"field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A high throughput genetic screen identifies new early meiotic recombination functions in Arabidopsis thaliana.", "journal": "PLoS genetics", "date": "2009-09", "authors": "De Muyt Arnaud, Pereira Lucie, Vezon Daniel, Chelysheva Liudmila, Gendrot Ghislaine, Chambon Aur\u00e9lie, Lain\u00e9-Choinard Sandrine, Pelletier Georges, Mercier Rapha\u00ebl, Nogu\u00e9 Fabien, Grelon Mathilde", "reference": { "type": "PubMed", "id": "19763177", "url": "https://pubmed.ncbi.nlm.nih.gov/19763177" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9M4A2-1", "protein_name": "Meiotic recombination protein SPO11-1", "gene_name": "SPO11-1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4KDF5-1", "protein_name": "Protein MULTIPOLAR SPINDLE 1", "gene_name": "MPS1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O23277-1", "protein_name": "Protein PUTATIVE RECOMBINATION INITIATION DEFECT 1", "gene_name": "PRD1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q0WWX5-1", "protein_name": "Putative recombination initiation defects 3", "gene_name": "PRD3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9M4A1-1", "protein_name": "Meiotic recombination protein SPO11-2", "gene_name": "SPO11-2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9M4A2", "url": "https://www.uniprot.org/uniprotkb/Q9M4A2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.19763177", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": 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"o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "A DNA topoisomerase VI-like complex initiates meiotic recombination.", "journal": "Science (New York, N.Y.)", "date": "2016", "authors": "Vrielynck N, Chambon A, Vezon D, Pereira L, Chelysheva L, De Muyt A, Mezard C, Mayer C, Grelon M", "reference": { "type": "PubMed", "id": "26917763", "url": "https://pubmed.ncbi.nlm.nih.gov/26917763" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9M4A2-1", "protein_name": "Meiotic recombination protein SPO11-1", "gene_name": "SPO11-1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9M4A1-1", 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"sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "MTOPVIB interacts with AtPRD1 and plays important roles in formation of meiotic DNA double-strand breaks in Arabidopsis.", "journal": "Sci. Rep.", "date": "2017", "authors": "Tang Yu, Yin Zhongnan, Zeng Yuejuan, Zhang Qinxin, Chen Liqun, He Yan, Lu Pingli, Ye De, Zhang Xueqin", "reference": { "type": "PubMed", "id": "28855712", "url": "https://pubmed.ncbi.nlm.nih.gov/28855712" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9M4A2-1", "protein_name": "Meiotic recombination protein SPO11-1", "gene_name": "SPO11-1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8RX33-1", "protein_name": "Protein DOUBLE-STRAND BREAK FORMATION", "gene_name": "DFO", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O23277-1", "protein_name": "Protein PUTATIVE RECOMBINATION INITIATION DEFECT 1", "gene_name": "PRD1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q0WWX5-1", "protein_name": "Putative recombination initiation defects 3", "gene_name": "PRD3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9M4A1-1", "protein_name": "Meiotic recombination protein SPO11-2", "gene_name": "SPO11-2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q5Q0E6-1", "protein_name": "Type 2 DNA topoisomerase 6 subunit B-like", "gene_name": "MTOPVIB", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9M4A2", "url": "https://www.uniprot.org/uniprotkb/Q9M4A2" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.28855712", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Structure and dynamics of UDP-glucose pyrophosphorylase from Arabidopsis thaliana with bound UDP-glucose and UTP.", "journal": "J. Mol. Biol.", "date": "2007", "authors": "McCoy Jason G, Bitto Eduard, Bingman Craig A, Wesenberg Gary E, Bannen Ryan M, Kondrashov Dmitry A, Phillips George N", "reference": { "type": "PubMed", "id": "17178129", "url": "https://pubmed.ncbi.nlm.nih.gov/17178129" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9M9P3-1", "protein_name": "UTP--glucose-1-phosphate uridylyltransferase 2", "gene_name": "UGP1; UGP2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9M9P3", "url": "https://www.uniprot.org/uniprotkb/Q9M9P3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.17178129", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": 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"uniprot_canonical_ac": "Q9M9P3-1", "protein_name": "UTP--glucose-1-phosphate uridylyltransferase 2", "gene_name": "UGP1; UGP2", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P57751-1", "protein_name": "UTP--glucose-1-phosphate uridylyltransferase 1", "gene_name": "UGP1; UGP2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "Q9M9P3", "url": "https://www.uniprot.org/uniprotkb/Q9M9P3" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.19366709", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", 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}, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "UDP-glucose pyrophosphorylase is rate limiting in vegetative and reproductive phases in Arabidopsis thaliana.", "journal": "Plant & cell physiology", "date": "2010-06", "authors": "Park Jong-In, Ishimizu Takeshi, Suwabe Keita, Sudo Keisuke, Masuko Hiromi, Hakozaki Hirokazu, Nou Ill-Sup, Suzuki Go, Watanabe Masao", "reference": { "type": "PubMed", "id": "20435647", "url": "https://pubmed.ncbi.nlm.nih.gov/20435647" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q9M9P3-1", "protein_name": 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"sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The pleiotropic role of the 26S proteasome subunit RPN10 in Arabidopsis growth and development supports a substrate-specific function in abscisic acid signaling.", "journal": "The Plant cell", "date": "2003-04", "authors": "Smalle Jan, Kurepa Jasmina, Yang Peizhen, Emborg Thomas J, Babiychuk Elena, Kushnir Sergei, Vierstra Richard D", "reference": { "type": "PubMed", "id": "12671091", "url": "https://pubmed.ncbi.nlm.nih.gov/12671091" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P55034-1", "protein_name": "26S proteasome non-ATPase regulatory subunit 4 homolog", "gene_name": "RPN10", "tax_name": 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"count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": 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Biol. Chem.", "date": "2004", "authors": "Yang Peizhen, Fu Hongyong, Walker Joseph, Papa Charles M, Smalle Jan, Ju Yu-Ming, Vierstra Richard D", "reference": { "type": "PubMed", "id": "14623884", "url": "https://pubmed.ncbi.nlm.nih.gov/14623884" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P55034-1", "protein_name": "26S proteasome non-ATPase regulatory subunit 4 homolog", "gene_name": "RPN10", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O23715-1", "protein_name": "Proteasome subunit alpha type-3", "gene_name": "PAG1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O04019-1", "protein_name": "26S proteasome regulatory subunit 6A homolog B", "gene_name": "RPT5B", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SEI2-1", "protein_name": "26S proteasome regulatory subunit 6A homolog A", "gene_name": "RPT5A", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SEI3-1", "protein_name": "26S proteasome 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"P42742-1", "protein_name": "Proteasome subunit beta type-1", "gene_name": "PBF1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8LD27-1", "protein_name": "Proteasome subunit beta type-6", "gene_name": "PBA1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P30186-1", "protein_name": "Proteasome subunit alpha type-7-A", "gene_name": "PAD1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P34066-1", "protein_name": "Proteasome subunit alpha type-1-A", "gene_name": "PAF1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LNU4-1", "protein_name": "26S proteasome non-ATPase regulatory subunit 3 homolog A", "gene_name": "RPN3A", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8GYA6-1", "protein_name": "26S proteasome non-ATPase regulatory subunit 13 homolog B", "gene_name": "RPN9B", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FHY0-1", "protein_name": "Putative 26S proteasome non-ATPase regulatory subunit 8 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"tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P55034", "url": "https://www.uniprot.org/uniprotkb/P55034" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.14623884", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 49 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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"count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "26S proteasome regulatory particle mutants have increased oxidative stress tolerance.", "journal": "The Plant journal : for cell and molecular biology", "date": "2008-01", "authors": "Kurepa Jasmina, Toh-E Akio, Smalle Jan A", "reference": { "type": "PubMed", "id": "17971041", "url": "https://pubmed.ncbi.nlm.nih.gov/17971041" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P55034-1", "protein_name": "26S proteasome non-ATPase regulatory subunit 4 homolog", "gene_name": "RPN10", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SGW3-1", "protein_name": "26S proteasome non-ATPase regulatory subunit 8 homolog A", "gene_name": "RPN12A", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SZD4-1", "protein_name": "26S proteasome regulatory subunit 4 homolog A", "gene_name": "RPT2A", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P55034", "url": "https://www.uniprot.org/uniprotkb/P55034" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.17971041", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, 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"n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Loss of 26S proteasome function leads to increased cell size and decreased cell number in Arabidopsis shoot organs.", "journal": "Plant physiology", "date": "2009-05", "authors": "Kurepa Jasmina, Wang Songhu, Li Yan, Zaitlin David, Pierce Andrew J, Smalle Jan A", "reference": { "type": "PubMed", "id": "19321709", "url": "https://pubmed.ncbi.nlm.nih.gov/19321709" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P55034-1", "protein_name": "26S proteasome non-ATPase regulatory subunit 4 homolog", "gene_name": "RPN10", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SGW3-1", "protein_name": "26S proteasome non-ATPase regulatory subunit 8 homolog A", "gene_name": "RPN12A", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SZD4-1", "protein_name": "26S proteasome regulatory subunit 4 homolog A", "gene_name": "RPT2A", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P55034", "url": "https://www.uniprot.org/uniprotkb/P55034" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.19321709", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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"Arabidopsis MBP1 gene encodes a conserved ubiquitin recognition component of the 26S proteasome.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "1996-01-23", "authors": "van Nocker S, Deveraux Q, Rechsteiner M, Vierstra R D", "reference": { "type": "PubMed", "id": "8570648", "url": "https://pubmed.ncbi.nlm.nih.gov/8570648" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P55034-1", "protein_name": "26S proteasome non-ATPase regulatory subunit 4 homolog", "gene_name": "RPN10", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P55034", "url": "https://www.uniprot.org/uniprotkb/P55034" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.8570648", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], 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Rep.", "date": "2015", "authors": "Kawamoto Nozomi, Sasabe Michiko, Endo Motomu, Machida Yasunori, Araki Takashi", "reference": { "type": "PubMed", "id": "25661797", "url": "https://pubmed.ncbi.nlm.nih.gov/25661797" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P46077-1", "protein_name": "14-3-3-like protein GF14 phi", "gene_name": "GF14; GRF4", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9C6P3-1", "protein_name": "Calcium-dependent protein kinase 33", "gene_name": "CPK33", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q7PCC6-1", "protein_name": "bZIP transcription factor 27", "gene_name": "FDP", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q84JK2-1", "protein_name": "Protein FD", "gene_name": "FD", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P42644-1", "protein_name": "14-3-3-like protein GF14 psi", "gene_name": "GRF3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q38872-1", "protein_name": "Calcium-dependent protein kinase 6", "gene_name": "CPK6", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "P46077", "url": "https://www.uniprot.org/uniprotkb/P46077" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "mutagenesis": [ { "start_pos": 276, "end_pos": 276, "sequence_org": "T", "sequence_mut": "A", "comment": "No effect on phosphorylation. 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"type": "PubMed", "id": "10590166", "url": "https://pubmed.ncbi.nlm.nih.gov/10590166" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O81223-1", "protein_name": "Calcineurin B-like protein 4", "gene_name": "CBL4; SOS3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q7FZF1-1", "protein_name": "Calcineurin B-like protein 5", "gene_name": "CBL5", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O81445-1", "protein_name": "Calcineurin B-like protein 1", "gene_name": "CBL1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8LEM7-1", "protein_name": "Calcineurin B-like protein 3", "gene_name": "CBL3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8RWC9-1", "protein_name": "CBL-interacting serine/threonine-protein kinase 1", "gene_name": "CIPK1", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9C5P6-1", "protein_name": "Calcineurin B-like protein 6", "gene_name": "CBL6", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81223", "url": "https://www.uniprot.org/uniprotkb/O81223" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "record_id": "pubmed.10590166", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "The Arabidopsis SOS2 protein kinase physically interacts with and is activated by the calcium-binding protein SOS3.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2000-03-28", "authors": "Halfter U, Ishitani M, Zhu J K", "reference": { "type": "PubMed", "id": "10725350", "url": "https://pubmed.ncbi.nlm.nih.gov/10725350" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "O81223-1", "protein_name": "Calcineurin B-like protein 4", "gene_name": "CBL4; SOS3", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O22932-1", "protein_name": "CBL-interacting serine/threonine-protein kinase 11", "gene_name": "CIPK11", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O65554-1", "protein_name": "CBL-interacting serine/threonine-protein kinase 6", "gene_name": "CIPK6", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P92937-1", "protein_name": "CBL-interacting serine/threonine-protein kinase 15", "gene_name": "CIPK15", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9C562-1", "protein_name": "CBL-interacting serine/threonine-protein kinase 10", "gene_name": "CIPK10", "tax_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LDI3-1", "protein_name": "CBL-interacting serine/threonine-protein kinase 24", "gene_name": "CIPK24; SOS2", "tax_name": "Mouse-ear cress" } ], "species": [ { "name": "Arabidopsis thaliana", "taxid": 3702, "evidence": [ { "database": "UniProtKB", "id": "O81223", "url": "https://www.uniprot.org/uniprotkb/O81223" } ], "common_name": "Mouse-ear cress", "glygen_name": "Arabidopsis", "reference_species": "Arabidopsis thaliana [3702]" } ], "mutagenesis": [ { "start_pos": 168, "end_pos": 168, "sequence_org": "T", "sequence_mut": "D", "comment": "Increases kinase activity.", "evidence": [ { "database": "UniProtKB", "id": "Q9LDI3", "url": 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