[ { "title": "Functional and structural studies of the nucleotide excision repair helicase XPD suggest a polarity for DNA translocation.", "journal": "The EMBO journal", "date": "2012", "authors": "Kuper J, Wolski SC, Michels G, Kisker C", "reference": { "type": "PubMed", "id": "22081108", "url": "https://pubmed.ncbi.nlm.nih.gov/22081108" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P30876-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB2", "gene_name": "POLR2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61218-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC2", "gene_name": "POLR2F", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15514-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB4", "gene_name": "POLR2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55854-1", "protein_name": "Small ubiquitin-related modifier 3", "gene_name": "SUMO3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P56282-1", "protein_name": "DNA polymerase epsilon subunit 2", "gene_name": "POLE2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P54727-1", "protein_name": "Lysine-specific demethylase RAD23B", "gene_name": "RAD23B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24928-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB1", "gene_name": "POLR2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60306-1", "protein_name": "RNA helicase aquarius", "gene_name": "AQR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNP9-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase E", "gene_name": "PPIE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9ULR0-3", "protein_name": "Pre-mRNA-splicing factor ISY1 homolog", "gene_name": "ISY1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96NB3-1", "protein_name": "Zinc finger protein 830", "gene_name": "ZNF830", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCS7-1", "protein_name": "Pre-mRNA-splicing factor SYF1", "gene_name": "XAB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13888-1", "protein_name": "General transcription factor IIH subunit 2", "gene_name": "GTF2H2C_2; GTF2H2C; GTF2H2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92759-1", "protein_name": "General transcription factor IIH subunit 4", "gene_name": "GTF2H4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UMS4-1", "protein_name": "Pre-mRNA-processing factor 19", "gene_name": "PRPF19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19447-1", "protein_name": "General transcription and DNA repair factor IIH helicase/translocase subunit XPB", "gene_name": "ERCC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCU8-1", "protein_name": "DNA polymerase delta subunit 4", "gene_name": "POLD4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07864-1", "protein_name": "DNA polymerase epsilon catalytic subunit A", "gene_name": "POLE", "tax_name": "Human" }, { "uniprot_canonical_ac": "P28340-1", "protein_name": "DNA polymerase delta catalytic subunit", "gene_name": "POLD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NR33-1", "protein_name": "DNA polymerase epsilon subunit 4", "gene_name": "POLE4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P28715-1", "protein_name": "DNA excision repair protein ERCC-5", "gene_name": "ERCC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13216-1", "protein_name": "DNA excision repair protein ERCC-8", "gene_name": "ERCC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UGN5-1", "protein_name": "Poly [ADP-ribose] polymerase 2", "gene_name": "PARP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZYL4-1", "protein_name": "General transcription factor IIH subunit 5", "gene_name": "GTF2H5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NRF9-1", "protein_name": "DNA polymerase epsilon subunit 3", "gene_name": "POLE3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBT6-1", "protein_name": "DNA polymerase kappa", "gene_name": "POLK", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35249-1", "protein_name": "Replication factor C subunit 4", "gene_name": "RFC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35244-1", "protein_name": "Replication protein A 14 kDa subunit", "gene_name": "RPA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52435-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB11-a", "gene_name": "POLR2J", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36954-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB9", "gene_name": "POLR2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19388-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53803-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52434-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC3", "gene_name": "POLR2H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62487-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB7", "gene_name": "POLR2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35251-1", "protein_name": "Replication factor C subunit 1", "gene_name": "RFC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93009-1", "protein_name": "Ubiquitin C-terminal hydrolase 7", "gene_name": "USP7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07992-1", "protein_name": "DNA excision repair protein ERCC-1", "gene_name": "ERCC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16531-1", "protein_name": "DNA damage-binding protein 1", "gene_name": "DDB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62875-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC5", "gene_name": "POLR2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19387-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27694-1", "protein_name": "Replication protein A 70 kDa DNA-binding subunit", "gene_name": "RPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41208-1", "protein_name": "Centrin-2", "gene_name": "CETN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01831-1", "protein_name": "DNA repair protein complementing XP-C cells", "gene_name": "XPC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86WJ1-1", "protein_name": "ATP-dependent chromatin remodeler CHD1L", "gene_name": "CHD1L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32780-1", "protein_name": "General transcription factor IIH subunit 1", "gene_name": "GTF2H1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23193-1", "protein_name": "Transcription elongation factor A protein 1", "gene_name": "TCEA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2YD98-1", "protein_name": "UV-stimulated scaffold protein A", "gene_name": "UVSSA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35250-1", "protein_name": "Replication factor C subunit 2", "gene_name": "RFC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13889-1", "protein_name": "General transcription factor IIH subunit 3", "gene_name": "GTF2H3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92466-1", "protein_name": "DNA damage-binding protein 2", "gene_name": "DDB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62877-1", "protein_name": "E3 ubiquitin-protein ligase RBX1", "gene_name": "RBX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15054-1", "protein_name": "DNA polymerase delta subunit 3", "gene_name": "POLD3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q03468-1", "protein_name": "DNA excision repair protein ERCC-6", "gene_name": "ERCC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18074-1", "protein_name": "General transcription and DNA repair factor IIH helicase subunit XPD", "gene_name": "ERCC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49005-1", "protein_name": "DNA polymerase delta subunit 2", "gene_name": "POLD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51948-1", "protein_name": "CDK-activating kinase assembly factor MAT1", "gene_name": "MNAT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51946-1", "protein_name": "Cyclin-H", "gene_name": "CCNH", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15927-1", "protein_name": "Replication protein A 32 kDa subunit", "gene_name": "RPA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63279-1", "protein_name": "SUMO-conjugating enzyme UBC9", "gene_name": "UBE2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "P54725-1", "protein_name": "Lysine-specific demethylase RAD23A", "gene_name": "RAD23A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40938-1", "protein_name": "Replication factor C subunit 3", "gene_name": "RFC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09874-1", "protein_name": "Poly [ADP-ribose] polymerase 1", "gene_name": "PARP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12004-1", "protein_name": "DNA sliding clamp PCNA", "gene_name": "PCNA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63165-1", "protein_name": "Small ubiquitin-related modifier 1", "gene_name": "SUMO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75925-1", "protein_name": "E3 SUMO-protein ligase PIAS1", "gene_name": "PIAS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61956-1", "protein_name": "Small ubiquitin-related modifier 2", "gene_name": "SUMO2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61088-1", "protein_name": "Ubiquitin-conjugating enzyme E2 N", "gene_name": "UBE2N", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZNA4-1", "protein_name": "E3 ubiquitin-protein ligase Arkadia", "gene_name": "RNF111", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13619-1", "protein_name": "Cullin-4A", "gene_name": "CUL4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13620-2", "protein_name": "Cullin-4B", "gene_name": "CUL4B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40937-1", "protein_name": "Replication factor C subunit 5", "gene_name": "RFC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15819-1", "protein_name": "Ubiquitin-conjugating enzyme E2 variant 2", "gene_name": "UBE2V2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q70EL2-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 45", "gene_name": "USP45", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50613-1", "protein_name": "Cyclin-dependent kinase 7", "gene_name": "CDK7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG47-1", "protein_name": "Polyubiquitin-B", "gene_name": "UBB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92889-1", "protein_name": "DNA repair endonuclease XPF", "gene_name": "ERCC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23025-1", "protein_name": "DNA repair protein complementing XP-A cells", "gene_name": "XPA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6X2-1", "protein_name": "E3 SUMO-protein ligase PIAS3", "gene_name": "PIAS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG48-1", "protein_name": "Polyubiquitin-C", "gene_name": "UBC", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P30876", "url": "https://www.uniprot.org/uniprotkb/P30876" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.22081108", 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"DNA-directed RNA polymerase II subunit RPB11-a", "gene_name": "POLR2J", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36954-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB9", "gene_name": "POLR2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62878-1", "protein_name": "E3 ubiquitin-protein ligase RBX1", "gene_name": "Rbx1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "P19388-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53803-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52434-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC3", "gene_name": "POLR2H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62487-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB7", "gene_name": "POLR2G", "tax_name": 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"tax_name": "Human" }, { "uniprot_canonical_ac": "Q6PI98-1", "protein_name": "INO80 complex subunit C", "gene_name": "INO80C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P25490-1", "protein_name": "Transcriptional repressor protein YY1", "gene_name": "YY1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O96019-1", "protein_name": "Actin-like protein 6A", "gene_name": "ACTL6A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG48-1", "protein_name": "Polyubiquitin-C", "gene_name": "UBC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P60709-1", "protein_name": "Actin, cytoplasmic 1", "gene_name": "ACTB", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P30876", "url": "https://www.uniprot.org/uniprotkb/P30876" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.22118460", "abstract": "", "glycosylation": [], "mutagenesis": 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"o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Mutations in UVSSA cause UV-sensitive syndrome and impair RNA polymerase IIo processing in transcription-coupled nucleotide-excision repair.", "journal": "Nature genetics", "date": "2012", "authors": "Nakazawa Y, Sasaki K, Mitsutake N, Matsuse M, Shimada M, Nardo T, Takahashi Y, Ohyama K, Ito K, Mishima H, Nomura M, Kinoshita A, Ono S, Takenaka K, Masuyama R, Kudo T, Slor H, Utani A, Tateishi S, Yamashita S, Stefanini M, Lehmann AR, Yoshiura K, Ogi T", "reference": { "type": "PubMed", "id": "22466610", "url": "https://pubmed.ncbi.nlm.nih.gov/22466610" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P30876-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB2", "gene_name": "POLR2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61218-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC2", "gene_name": "POLR2F", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15514-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB4", "gene_name": "POLR2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24928-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB1", "gene_name": "POLR2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60306-1", "protein_name": "RNA helicase aquarius", "gene_name": "AQR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNS2-1", "protein_name": "COP9 signalosome complex subunit 3", "gene_name": "COPS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNP9-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase E", "gene_name": "PPIE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9ULR0-3", "protein_name": "Pre-mRNA-splicing factor ISY1 homolog", "gene_name": "ISY1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96NB3-1", "protein_name": "Zinc finger protein 830", "gene_name": "ZNF830", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCS7-1", "protein_name": "Pre-mRNA-splicing factor SYF1", "gene_name": "XAB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13888-1", "protein_name": "General transcription factor IIH subunit 2", "gene_name": "GTF2H2C_2; GTF2H2C; GTF2H2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92759-1", "protein_name": "General transcription factor IIH subunit 4", "gene_name": "GTF2H4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UMS4-1", "protein_name": "Pre-mRNA-processing factor 19", "gene_name": "PRPF19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19447-1", "protein_name": "General transcription and DNA repair factor IIH helicase/translocase subunit XPB", "gene_name": "ERCC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13216-1", "protein_name": "DNA excision repair protein ERCC-8", "gene_name": "ERCC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZYL4-1", "protein_name": "General transcription factor IIH subunit 5", "gene_name": "GTF2H5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBW8-1", "protein_name": "COP9 signalosome complex subunit 7a", "gene_name": "COPS7A", 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"DNA-directed RNA polymerase II subunit RPB7", "gene_name": "POLR2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93009-1", "protein_name": "Ubiquitin C-terminal hydrolase 7", "gene_name": "USP7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16531-1", "protein_name": "DNA damage-binding protein 1", "gene_name": "DDB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62875-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC5", "gene_name": "POLR2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19387-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61201-1", "protein_name": "COP9 signalosome complex subunit 2", "gene_name": "COPS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32780-1", "protein_name": "General transcription factor IIH subunit 1", "gene_name": "GTF2H1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23193-1", "protein_name": "Transcription elongation factor A protein 1", "gene_name": "TCEA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2YD98-1", "protein_name": "UV-stimulated scaffold protein A", "gene_name": "UVSSA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13889-1", "protein_name": "General transcription factor IIH subunit 3", "gene_name": "GTF2H3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H9Q2-1", "protein_name": "COP9 signalosome complex subunit 7b", "gene_name": "COPS7B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13098-4", "protein_name": "COP9 signalosome complex subunit 1", "gene_name": "GPS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BT78-1", "protein_name": "COP9 signalosome complex subunit 4", "gene_name": "COPS4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62877-1", "protein_name": "E3 ubiquitin-protein ligase RBX1", "gene_name": "RBX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q03468-1", "protein_name": "DNA 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"gene_name": "CUL4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13620-2", "protein_name": "Cullin-4B", "gene_name": "CUL4B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50613-1", "protein_name": "Cyclin-dependent kinase 7", "gene_name": "CDK7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG47-1", "protein_name": "Polyubiquitin-B", "gene_name": "UBB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23025-1", "protein_name": "DNA repair protein complementing XP-A cells", "gene_name": "XPA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55199-1", "protein_name": "RNA polymerase II elongation factor ELL", "gene_name": "ELL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG48-1", "protein_name": "Polyubiquitin-C", "gene_name": "UBC", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 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{ "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "UV-sensitive syndrome protein UVSSA recruits USP7 to regulate transcription-coupled repair.", "journal": "Nature genetics", "date": "2012", "authors": "Schwertman P, Lagarou A, Dekkers DH, Raams 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"CDK-activating kinase assembly factor MAT1", "gene_name": "MNAT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51946-1", "protein_name": "Cyclin-H", "gene_name": "CCNH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7L5N1-1", "protein_name": "COP9 signalosome complex subunit 6", "gene_name": "COPS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92905-1", "protein_name": "COP9 signalosome complex subunit 5", "gene_name": "COPS5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13619-1", "protein_name": "Cullin-4A", "gene_name": "CUL4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13620-2", "protein_name": "Cullin-4B", "gene_name": "CUL4B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50613-1", "protein_name": "Cyclin-dependent kinase 7", "gene_name": "CDK7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG47-1", "protein_name": "Polyubiquitin-B", "gene_name": "UBB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23025-1", "protein_name": "DNA repair protein complementing XP-A cells", "gene_name": "XPA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55199-1", "protein_name": "RNA polymerase II elongation factor ELL", "gene_name": "ELL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG48-1", "protein_name": "Polyubiquitin-C", "gene_name": "UBC", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P30876", "url": "https://www.uniprot.org/uniprotkb/P30876" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.22466611", "abstract": "", "glycosylation": [], 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"o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Mutations in UVSSA cause UV-sensitive syndrome and destabilize ERCC6 in transcription-coupled DNA repair.", "journal": "Nature genetics", "date": "2012", "authors": "Zhang X, Horibata K, Saijo M, Ishigami C, Ukai A, Kanno S, Tahara H, Neilan EG, Honma M, Nohmi T, Yasui A, Tanaka K", "reference": { "type": "PubMed", "id": "22466612", "url": "https://pubmed.ncbi.nlm.nih.gov/22466612" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P30876-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB2", "gene_name": "POLR2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61218-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC2", "gene_name": "POLR2F", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15514-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB4", "gene_name": "POLR2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24928-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB1", "gene_name": "POLR2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60306-1", "protein_name": "RNA helicase aquarius", "gene_name": "AQR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNS2-1", "protein_name": "COP9 signalosome complex subunit 3", "gene_name": "COPS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNP9-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase E", "gene_name": "PPIE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9ULR0-3", "protein_name": "Pre-mRNA-splicing factor ISY1 homolog", "gene_name": "ISY1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96NB3-1", "protein_name": "Zinc finger protein 830", "gene_name": "ZNF830", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCS7-1", "protein_name": "Pre-mRNA-splicing factor SYF1", "gene_name": "XAB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13888-1", "protein_name": "General transcription factor IIH subunit 2", "gene_name": "GTF2H2C_2; GTF2H2C; GTF2H2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92759-1", "protein_name": "General transcription factor IIH subunit 4", "gene_name": "GTF2H4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UMS4-1", "protein_name": "Pre-mRNA-processing factor 19", "gene_name": "PRPF19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19447-1", "protein_name": "General transcription and DNA repair factor IIH helicase/translocase subunit XPB", "gene_name": "ERCC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13216-1", "protein_name": "DNA excision repair protein ERCC-8", "gene_name": "ERCC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZYL4-1", "protein_name": "General transcription factor IIH subunit 5", "gene_name": "GTF2H5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBW8-1", "protein_name": "COP9 signalosome complex subunit 7a", "gene_name": "COPS7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99627-1", "protein_name": "COP9 signalosome complex subunit 8", "gene_name": "COPS8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52435-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB11-a", "gene_name": "POLR2J", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36954-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB9", "gene_name": "POLR2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19388-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53803-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52434-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC3", "gene_name": "POLR2H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62487-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB7", "gene_name": "POLR2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93009-1", "protein_name": "Ubiquitin C-terminal hydrolase 7", "gene_name": "USP7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16531-1", "protein_name": "DNA damage-binding protein 1", "gene_name": "DDB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62875-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC5", "gene_name": "POLR2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19387-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61201-1", "protein_name": "COP9 signalosome complex subunit 2", "gene_name": "COPS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32780-1", "protein_name": "General transcription factor IIH subunit 1", "gene_name": "GTF2H1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23193-1", "protein_name": "Transcription elongation factor A protein 1", "gene_name": "TCEA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2YD98-1", "protein_name": "UV-stimulated scaffold protein A", "gene_name": "UVSSA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13889-1", "protein_name": "General transcription factor IIH subunit 3", "gene_name": "GTF2H3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H9Q2-1", "protein_name": "COP9 signalosome complex subunit 7b", "gene_name": "COPS7B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13098-4", "protein_name": "COP9 signalosome complex subunit 1", "gene_name": "GPS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BT78-1", "protein_name": "COP9 signalosome complex subunit 4", "gene_name": "COPS4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62877-1", "protein_name": "E3 ubiquitin-protein ligase RBX1", "gene_name": "RBX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q03468-1", "protein_name": "DNA excision repair protein ERCC-6", "gene_name": "ERCC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18074-1", "protein_name": "General transcription and DNA repair factor IIH helicase subunit XPD", "gene_name": "ERCC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51948-1", "protein_name": "CDK-activating kinase assembly factor MAT1", "gene_name": "MNAT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51946-1", "protein_name": "Cyclin-H", "gene_name": "CCNH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7L5N1-1", "protein_name": "COP9 signalosome complex subunit 6", "gene_name": "COPS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92905-1", "protein_name": "COP9 signalosome complex subunit 5", "gene_name": "COPS5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13619-1", "protein_name": "Cullin-4A", "gene_name": "CUL4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13620-2", "protein_name": "Cullin-4B", "gene_name": "CUL4B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50613-1", "protein_name": "Cyclin-dependent kinase 7", "gene_name": "CDK7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG47-1", "protein_name": "Polyubiquitin-B", "gene_name": "UBB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23025-1", "protein_name": "DNA repair protein complementing XP-A cells", "gene_name": "XPA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55199-1", "protein_name": "RNA polymerase II elongation factor ELL", "gene_name": "ELL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG48-1", "protein_name": "Polyubiquitin-C", "gene_name": "UBC", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P30876", "url": "https://www.uniprot.org/uniprotkb/P30876" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.22466612", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 52 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", 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H2BC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15397-1", "protein_name": "Importin-8", "gene_name": "IPO8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NDV7-1", "protein_name": "Trinucleotide repeat-containing gene 6A protein", "gene_name": "TNRC6A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71DI3-1", "protein_name": "Histone H3.2", "gene_name": "H3C13; H3C14; H3C15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16104-1", "protein_name": "Histone H2AX", "gene_name": "H2AX", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33778-1", "protein_name": "Histone H2B type 1-B", "gene_name": "H2BC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P58876-1", "protein_name": "Histone H2B type 1-D", "gene_name": "H2BC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A08-1", "protein_name": "Histone H2B type 1-A", "gene_name": "H2BC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23527-1", "protein_name": "Histone H2B type 1-O", "gene_name": "H2BC17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0C5Y9-1", "protein_name": "Histone H2A-Bbd type 1", "gene_name": "H2AB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTM1-1", "protein_name": "Histone H2A.J", "gene_name": "H2AJ", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60814-1", "protein_name": "Histone H2B type 1-K", "gene_name": "H2BC12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93077-1", "protein_name": "Histone H2A type 1-C", "gene_name": "H2AC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93079-1", "protein_name": "Histone H2B type 1-H", "gene_name": "H2BC9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99879-1", "protein_name": "Histone H2B type 1-M", "gene_name": "H2BC14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71UI9-1", "protein_name": "Histone H2A.V", "gene_name": "H2AZ2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04908-1", "protein_name": "Histone H2A type 1-B/E", "gene_name": "H2AC4; H2AC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06899-1", "protein_name": "Histone H2B type 1-J", "gene_name": "H2BC11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20671-1", "protein_name": "Histone H2A type 1-D", "gene_name": "H2AC7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57053-1", "protein_name": "Histone H2B type F-S", "gene_name": "H2BC12L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16777-1", "protein_name": "Histone H2A type 2-C", "gene_name": "H2AC20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6FI13-1", "protein_name": "Histone H2A type 2-A", "gene_name": "H2AC18; H2AC19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N257-1", "protein_name": "Histone H2B type 3-B", "gene_name": "H2BC26", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99877-1", "protein_name": "Histone H2B type 1-N", "gene_name": "H2BC15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99878-1", "protein_name": "Histone H2A type 1-J", "gene_name": "H2AC14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99880-1", "protein_name": "Histone H2B type 1-L", "gene_name": "H2BC13", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P30876", "url": "https://www.uniprot.org/uniprotkb/P30876" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.22722852", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 45 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": 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"count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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"tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HAV4-1", "protein_name": "Exportin-5", "gene_name": "XPO5", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75569-1", "protein_name": "Interferon-inducible double-stranded RNA-dependent protein kinase activator A", "gene_name": "PRKRA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCK5-1", "protein_name": "Protein argonaute-4", "gene_name": "AGO4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62826-1", "protein_name": "GTP-binding nuclear protein Ran", "gene_name": "RAN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPY3-1", "protein_name": "Endoribonuclease Dicer", "gene_name": "DICER1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UL18-1", "protein_name": "Protein argonaute-1", "gene_name": "AGO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15633-1", "protein_name": "RISC-loading complex subunit TARBP2", "gene_name": "TARBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24928-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB1", "gene_name": "POLR2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52435-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB11-a", "gene_name": "POLR2J", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36954-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB9", "gene_name": "POLR2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19388-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53803-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52434-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC3", "gene_name": "POLR2H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62487-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB7", "gene_name": "POLR2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62875-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC5", "gene_name": "POLR2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19387-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKV8-1", "protein_name": "Protein argonaute-2", "gene_name": "AGO2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H9G7-1", "protein_name": "Protein argonaute-3", "gene_name": "AGO3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NRR4-1", "protein_name": "Ribonuclease 3", "gene_name": "DROSHA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WYQ5-1", "protein_name": "Microprocessor complex subunit DGCR8", "gene_name": "DGCR8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z5W3-1", "protein_name": "RNA 5'-monophosphate methyltransferase", "gene_name": "BCDIN3D", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P30876", "url": "https://www.uniprot.org/uniprotkb/P30876" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.22844086", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 24 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "KIAA1530 protein is recruited by Cockayne syndrome complementation group protein A (CSA) to participate in transcription-coupled repair (TCR).", "journal": "The Journal of biological chemistry", "date": "2012", "authors": "Fei J, Chen J", "reference": { "type": "PubMed", "id": "22902626", "url": "https://pubmed.ncbi.nlm.nih.gov/22902626" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P30876-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB2", "gene_name": "POLR2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61218-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC2", "gene_name": "POLR2F", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15514-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB4", "gene_name": "POLR2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24928-1", "protein_name": "DNA-directed RNA polymerase II subunit 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"tax_name": "Human" }, { "uniprot_canonical_ac": "Q92759-1", "protein_name": "General transcription factor IIH subunit 4", "gene_name": "GTF2H4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UMS4-1", "protein_name": "Pre-mRNA-processing factor 19", "gene_name": "PRPF19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19447-1", "protein_name": "General transcription and DNA repair factor IIH helicase/translocase subunit XPB", "gene_name": "ERCC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13216-1", "protein_name": "DNA excision repair protein ERCC-8", "gene_name": "ERCC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZYL4-1", "protein_name": "General transcription factor IIH subunit 5", "gene_name": "GTF2H5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBW8-1", "protein_name": "COP9 signalosome complex subunit 7a", "gene_name": "COPS7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99627-1", "protein_name": "COP9 signalosome complex subunit 8", "gene_name": "COPS8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52435-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB11-a", "gene_name": "POLR2J", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36954-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB9", "gene_name": "POLR2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19388-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53803-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52434-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC3", "gene_name": "POLR2H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62487-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB7", "gene_name": "POLR2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93009-1", "protein_name": "Ubiquitin C-terminal hydrolase 7", "gene_name": "USP7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16531-1", "protein_name": "DNA damage-binding protein 1", "gene_name": "DDB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62875-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC5", "gene_name": "POLR2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19387-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61201-1", "protein_name": "COP9 signalosome complex subunit 2", "gene_name": "COPS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32780-1", "protein_name": "General transcription factor IIH subunit 1", "gene_name": "GTF2H1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23193-1", "protein_name": "Transcription elongation factor A protein 1", "gene_name": "TCEA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2YD98-1", "protein_name": "UV-stimulated scaffold protein A", "gene_name": "UVSSA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13889-1", "protein_name": "General transcription factor IIH subunit 3", "gene_name": "GTF2H3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H9Q2-1", "protein_name": "COP9 signalosome complex subunit 7b", "gene_name": "COPS7B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13098-4", "protein_name": "COP9 signalosome complex subunit 1", "gene_name": "GPS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BT78-1", "protein_name": "COP9 signalosome complex subunit 4", "gene_name": "COPS4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62877-1", "protein_name": "E3 ubiquitin-protein ligase RBX1", "gene_name": "RBX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q03468-1", "protein_name": "DNA excision repair protein ERCC-6", "gene_name": "ERCC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18074-1", "protein_name": "General transcription and DNA repair factor IIH helicase subunit XPD", "gene_name": "ERCC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51948-1", "protein_name": "CDK-activating kinase assembly factor MAT1", "gene_name": "MNAT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51946-1", "protein_name": "Cyclin-H", "gene_name": "CCNH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7L5N1-1", "protein_name": "COP9 signalosome complex subunit 6", "gene_name": "COPS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92905-1", "protein_name": "COP9 signalosome complex subunit 5", "gene_name": "COPS5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13619-1", "protein_name": "Cullin-4A", "gene_name": "CUL4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13620-2", "protein_name": "Cullin-4B", "gene_name": "CUL4B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50613-1", "protein_name": "Cyclin-dependent kinase 7", "gene_name": "CDK7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG47-1", "protein_name": "Polyubiquitin-B", "gene_name": "UBB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23025-1", "protein_name": "DNA repair protein complementing XP-A cells", "gene_name": "XPA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55199-1", "protein_name": "RNA polymerase II elongation factor ELL", "gene_name": "ELL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG48-1", "protein_name": "Polyubiquitin-C", "gene_name": "UBC", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P30876", "url": "https://www.uniprot.org/uniprotkb/P30876" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.22902626", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 52 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Argonaute proteins couple chromatin silencing to alternative splicing.", "journal": "Nature structural & molecular biology", "date": "2012", "authors": "Ameyar-Zazoua M, Rachez C, Souidi M, Robin P, Fritsch L, Young R, Morozova N, Fenouil R, Descostes N, Andrau JC, Mathieu J, Hamiche A, Ait-Si-Ali S, Muchardt C, Batsche E, Harel-Bellan A", "reference": { "type": "PubMed", "id": "22961379", "url": "https://pubmed.ncbi.nlm.nih.gov/22961379" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P30876-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB2", "gene_name": "POLR2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61218-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC2", "gene_name": "POLR2F", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15514-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB4", "gene_name": "POLR2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62826-1", "protein_name": "GTP-binding nuclear protein Ran", "gene_name": "RAN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UL18-1", "protein_name": "Protein argonaute-1", "gene_name": "AGO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24928-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB1", "gene_name": "POLR2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52435-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB11-a", "gene_name": "POLR2J", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36954-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB9", "gene_name": "POLR2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19388-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53803-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52434-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC3", "gene_name": "POLR2H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62487-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB7", "gene_name": "POLR2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84243-1", "protein_name": "Histone H3.3", "gene_name": "H3-3A; H3-3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62875-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC5", "gene_name": "POLR2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19387-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62805-1", "protein_name": "Histone H4", "gene_name": "H4C11; H4C12; H4C13; H4C14; H4C15; H4C16; H4C1; H4C2; H4C3; H4C4; H4C5; H4C6; H4C8; H4C9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68431-1", "protein_name": "Histone H3.1", "gene_name": "H3C10; H3C11; H3C12; H3C1; H3C2; H3C3; H3C4; H3C6; H3C7; H3C8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKV8-1", "protein_name": "Protein argonaute-2", "gene_name": "AGO2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16778-1", "protein_name": "Histone H2B type 2-E", "gene_name": "H2BC21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62807-1", "protein_name": "Histone H2B type 1-C/E/F/G/I", "gene_name": "H2BC10; H2BC4; H2BC6; H2BC7; H2BC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15397-1", "protein_name": "Importin-8", "gene_name": "IPO8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NDV7-1", "protein_name": "Trinucleotide repeat-containing gene 6A protein", "gene_name": "TNRC6A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71DI3-1", "protein_name": "Histone H3.2", "gene_name": "H3C13; H3C14; H3C15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16104-1", "protein_name": "Histone H2AX", "gene_name": "H2AX", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33778-1", "protein_name": "Histone H2B type 1-B", "gene_name": "H2BC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P58876-1", "protein_name": "Histone H2B type 1-D", "gene_name": "H2BC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A08-1", "protein_name": "Histone H2B type 1-A", "gene_name": "H2BC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23527-1", "protein_name": "Histone H2B type 1-O", "gene_name": "H2BC17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0C5Y9-1", "protein_name": "Histone H2A-Bbd type 1", "gene_name": "H2AB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTM1-1", "protein_name": "Histone H2A.J", "gene_name": "H2AJ", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60814-1", "protein_name": "Histone H2B type 1-K", "gene_name": "H2BC12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93077-1", "protein_name": "Histone H2A type 1-C", "gene_name": "H2AC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93079-1", "protein_name": "Histone H2B type 1-H", "gene_name": "H2BC9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99879-1", "protein_name": "Histone H2B type 1-M", "gene_name": "H2BC14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71UI9-1", "protein_name": "Histone H2A.V", "gene_name": "H2AZ2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04908-1", "protein_name": "Histone H2A type 1-B/E", "gene_name": "H2AC4; H2AC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06899-1", "protein_name": "Histone H2B type 1-J", "gene_name": "H2BC11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20671-1", "protein_name": "Histone H2A type 1-D", "gene_name": "H2AC7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57053-1", "protein_name": "Histone H2B type F-S", "gene_name": "H2BC12L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16777-1", "protein_name": "Histone H2A type 2-C", "gene_name": "H2AC20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6FI13-1", "protein_name": "Histone H2A type 2-A", "gene_name": "H2AC18; H2AC19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N257-1", "protein_name": "Histone H2B type 3-B", "gene_name": "H2BC26", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99877-1", "protein_name": "Histone H2B type 1-N", "gene_name": "H2BC15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99878-1", "protein_name": "Histone H2A type 1-J", "gene_name": "H2AC14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99880-1", "protein_name": "Histone H2B type 1-L", "gene_name": "H2BC13", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P30876", "url": "https://www.uniprot.org/uniprotkb/P30876" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.22961379", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 45 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Selective constraint on copy number variation in human piwi-interacting RNA Loci.", "journal": "PloS one", "date": "2012", "authors": "Gould DW, Lukic S, Chen KC", "reference": { "type": "PubMed", "id": "23056369", "url": "https://pubmed.ncbi.nlm.nih.gov/23056369" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P30876-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB2", "gene_name": 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"gene_name": "PLD6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52435-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB11-a", "gene_name": "POLR2J", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36954-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB9", "gene_name": "POLR2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19388-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53803-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52434-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC3", "gene_name": "POLR2H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62487-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB7", "gene_name": "POLR2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WWH4-1", "protein_name": "Ankyrin repeat, SAM and basic leucine zipper domain-containing protein 1", "gene_name": "ASZ1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96J94-1", "protein_name": "Piwi-like protein 1", "gene_name": "PIWIL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62875-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC5", "gene_name": "POLR2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19387-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75344-1", "protein_name": "Inactive peptidyl-prolyl cis-trans isomerase FKBP6", "gene_name": "FKBP6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NQI0-1", "protein_name": "Probable ATP-dependent RNA helicase DDX4", "gene_name": "DDX4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96JY0-1", "protein_name": "Protein maelstrom homolog", "gene_name": "MAEL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TC59-1", "protein_name": "Piwi-like protein 2", "gene_name": "PIWIL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXT6-1", "protein_name": "RNA helicase Mov10l1", "gene_name": "MOV10L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07900-1", "protein_name": "Heat shock protein HSP 90-alpha", "gene_name": "HSP90AA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z3Z4-1", "protein_name": "Piwi-like protein 4", "gene_name": "PIWIL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10243-1", "protein_name": "Myb-related protein A", "gene_name": "MYBL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2W6-2", "protein_name": "Tudor and KH domain-containing protein", "gene_name": "TDRKH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NDG6-1", "protein_name": "ATP-dependent RNA helicase TDRD9", "gene_name": "TDRD9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXT4-1", "protein_name": "Tudor domain-containing protein 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"field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Human RNA methyltransferase BCDIN3D regulates microRNA processing.", "journal": "Cell", "date": "2012", "authors": "Xhemalce B, Robson SC, Kouzarides T", "reference": { "type": "PubMed", "id": "23063121", "url": "https://pubmed.ncbi.nlm.nih.gov/23063121" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P30876-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB2", "gene_name": "POLR2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61218-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC2", "gene_name": "POLR2F", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15514-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB4", "gene_name": "POLR2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HAV4-1", "protein_name": "Exportin-5", "gene_name": "XPO5", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75569-1", "protein_name": "Interferon-inducible double-stranded RNA-dependent protein kinase activator A", "gene_name": "PRKRA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCK5-1", "protein_name": "Protein argonaute-4", "gene_name": "AGO4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62826-1", "protein_name": "GTP-binding nuclear protein Ran", "gene_name": "RAN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPY3-1", "protein_name": "Endoribonuclease Dicer", "gene_name": "DICER1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UL18-1", "protein_name": "Protein argonaute-1", "gene_name": "AGO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15633-1", "protein_name": "RISC-loading complex subunit TARBP2", "gene_name": "TARBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24928-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB1", "gene_name": "POLR2A", "tax_name": "Human" }, { "uniprot_canonical_ac": 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"protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53803-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52434-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC3", "gene_name": "POLR2H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62487-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB7", "gene_name": "POLR2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62875-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC5", "gene_name": "POLR2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19387-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99598-1", "protein_name": "Translin-associated protein X", "gene_name": "TSNAX", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKV8-1", "protein_name": "Protein argonaute-2", "gene_name": "AGO2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H9G7-1", "protein_name": "Protein argonaute-3", "gene_name": "AGO3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15631-1", "protein_name": "Translin", "gene_name": "TSN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NRR4-1", "protein_name": "Ribonuclease 3", "gene_name": "DROSHA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WYQ5-1", "protein_name": "Microprocessor complex subunit DGCR8", "gene_name": "DGCR8", "tax_name": "Human" }, { "uniprot_canonical_ac": "A1ZAW0-1", "protein_name": "Endoribonuclease Dcr-2", "gene_name": "Dcr-2", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q7Z5W3-1", "protein_name": "RNA 5'-monophosphate methyltransferase", "gene_name": "BCDIN3D", "tax_name": "Human" }, { "uniprot_canonical_ac": "P97473-1", "protein_name": "RISC-loading complex subunit TARBP2", "gene_name": "Tarbp2", "tax_name": "Mouse" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P30876", "url": "https://www.uniprot.org/uniprotkb/P30876" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.23063653", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 30 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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"field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Human TNRC6A is an Argonaute-navigator protein for microRNA-mediated gene silencing in the nucleus.", "journal": "RNA (New York, N.Y.)", "date": "2013", "authors": "Nishi K, Nishi A, Nagasawa T, Ui-Tei K", "reference": { "type": "PubMed", "id": "23150874", "url": "https://pubmed.ncbi.nlm.nih.gov/23150874" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P30876-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB2", "gene_name": "POLR2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61218-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC2", "gene_name": "POLR2F", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15514-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB4", "gene_name": "POLR2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62826-1", "protein_name": 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"uniprot_canonical_ac": "Q93079-1", "protein_name": "Histone H2B type 1-H", "gene_name": "H2BC9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99879-1", "protein_name": "Histone H2B type 1-M", "gene_name": "H2BC14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71UI9-1", "protein_name": "Histone H2A.V", "gene_name": "H2AZ2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04908-1", "protein_name": "Histone H2A type 1-B/E", "gene_name": "H2AC4; H2AC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06899-1", "protein_name": "Histone H2B type 1-J", "gene_name": "H2BC11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20671-1", "protein_name": "Histone H2A type 1-D", "gene_name": "H2AC7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57053-1", "protein_name": "Histone H2B type F-S", "gene_name": "H2BC12L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16777-1", "protein_name": "Histone H2A type 2-C", "gene_name": "H2AC20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6FI13-1", "protein_name": "Histone H2A type 2-A", "gene_name": "H2AC18; H2AC19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N257-1", "protein_name": "Histone H2B type 3-B", "gene_name": "H2BC26", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99877-1", "protein_name": "Histone H2B type 1-N", "gene_name": "H2BC15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99878-1", "protein_name": "Histone H2A type 1-J", "gene_name": "H2AC14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99880-1", "protein_name": "Histone H2B type 1-L", "gene_name": "H2BC13", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P30876", "url": "https://www.uniprot.org/uniprotkb/P30876" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.23150874", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], 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"P62826-1", "protein_name": "GTP-binding nuclear protein Ran", "gene_name": "RAN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPY3-1", "protein_name": "Endoribonuclease Dicer", "gene_name": "DICER1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UL18-1", "protein_name": "Protein argonaute-1", "gene_name": "AGO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15633-1", "protein_name": "RISC-loading complex subunit TARBP2", "gene_name": "TARBP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24928-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB1", "gene_name": "POLR2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52435-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB11-a", "gene_name": "POLR2J", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36954-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB9", "gene_name": "POLR2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19388-1", "protein_name": 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"authors": "Wagner Stacey D, Yakovchuk Petro, Gilman Benjamin, Ponicsan Steven L, Drullinger Linda F, Kugel Jennifer F, Goodrich James A", "reference": { "type": "PubMed", "id": "23395899", "url": "https://pubmed.ncbi.nlm.nih.gov/23395899" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P30876-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB2", "gene_name": "POLR2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24928-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB1", "gene_name": "POLR2A", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P30876", "url": "https://www.uniprot.org/uniprotkb/P30876" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.23395899", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], 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}, { "uniprot_canonical_ac": "Q8NDG6-1", "protein_name": "ATP-dependent RNA helicase TDRD9", "gene_name": "TDRD9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXT4-1", "protein_name": "Tudor domain-containing protein 1", "gene_name": "TDRD1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P30876", "url": "https://www.uniprot.org/uniprotkb/P30876" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.23826142", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 29 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": 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"P62805-1", "protein_name": "Histone H4", "gene_name": "H4C11; H4C12; H4C13; H4C14; H4C15; H4C16; H4C1; H4C2; H4C3; H4C4; H4C5; H4C6; H4C8; H4C9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68431-1", "protein_name": "Histone H3.1", "gene_name": "H3C10; H3C11; H3C12; H3C1; H3C2; H3C3; H3C4; H3C6; H3C7; H3C8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKV8-1", "protein_name": "Protein argonaute-2", "gene_name": "AGO2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16778-1", "protein_name": "Histone H2B type 2-E", "gene_name": "H2BC21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62807-1", "protein_name": "Histone H2B type 1-C/E/F/G/I", "gene_name": "H2BC10; H2BC4; H2BC6; H2BC7; H2BC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15397-1", "protein_name": "Importin-8", "gene_name": "IPO8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NDV7-1", "protein_name": "Trinucleotide repeat-containing gene 6A protein", "gene_name": "TNRC6A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71DI3-1", "protein_name": "Histone H3.2", "gene_name": "H3C13; H3C14; H3C15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16104-1", "protein_name": "Histone H2AX", "gene_name": "H2AX", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33778-1", "protein_name": "Histone H2B type 1-B", "gene_name": "H2BC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P58876-1", "protein_name": "Histone H2B type 1-D", "gene_name": "H2BC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A08-1", "protein_name": "Histone H2B type 1-A", "gene_name": "H2BC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23527-1", "protein_name": "Histone H2B type 1-O", "gene_name": "H2BC17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0C5Y9-1", "protein_name": "Histone H2A-Bbd type 1", "gene_name": "H2AB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTM1-1", "protein_name": "Histone H2A.J", "gene_name": "H2AJ", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60814-1", "protein_name": "Histone H2B type 1-K", "gene_name": "H2BC12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93077-1", "protein_name": "Histone H2A type 1-C", "gene_name": "H2AC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93079-1", "protein_name": "Histone H2B type 1-H", "gene_name": "H2BC9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99879-1", "protein_name": "Histone H2B type 1-M", "gene_name": "H2BC14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71UI9-1", "protein_name": "Histone H2A.V", "gene_name": "H2AZ2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04908-1", "protein_name": "Histone H2A type 1-B/E", "gene_name": "H2AC4; H2AC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06899-1", "protein_name": "Histone H2B type 1-J", "gene_name": "H2BC11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20671-1", "protein_name": "Histone H2A type 1-D", "gene_name": "H2AC7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57053-1", "protein_name": "Histone H2B type F-S", "gene_name": "H2BC12L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16777-1", "protein_name": "Histone H2A type 2-C", "gene_name": "H2AC20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6FI13-1", "protein_name": "Histone H2A type 2-A", "gene_name": "H2AC18; H2AC19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N257-1", "protein_name": "Histone H2B type 3-B", "gene_name": "H2BC26", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99877-1", "protein_name": "Histone H2B type 1-N", "gene_name": "H2BC15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99878-1", "protein_name": "Histone H2A type 1-J", "gene_name": "H2AC14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99880-1", "protein_name": "Histone H2B type 1-L", "gene_name": "H2BC13", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P30876", "url": "https://www.uniprot.org/uniprotkb/P30876" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.23882114", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 45 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Mammalian transcription-coupled excision repair.", "journal": "Cold Spring Harbor perspectives in biology", "date": "2013", "authors": "Vermeulen W, Fousteri M", "reference": { "type": "PubMed", "id": "23906714", "url": "https://pubmed.ncbi.nlm.nih.gov/23906714" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P30876-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB2", "gene_name": "POLR2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61218-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC2", "gene_name": "POLR2F", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15514-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB4", "gene_name": "POLR2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24928-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB1", "gene_name": "POLR2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60306-1", "protein_name": "RNA helicase aquarius", "gene_name": "AQR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNP9-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase E", "gene_name": "PPIE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9ULR0-3", "protein_name": "Pre-mRNA-splicing factor ISY1 homolog", "gene_name": "ISY1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96NB3-1", "protein_name": "Zinc finger protein 830", "gene_name": "ZNF830", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCS7-1", "protein_name": "Pre-mRNA-splicing factor SYF1", "gene_name": "XAB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13888-1", "protein_name": "General transcription factor IIH subunit 2", "gene_name": "GTF2H2C_2; GTF2H2C; GTF2H2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92759-1", "protein_name": "General transcription factor IIH subunit 4", "gene_name": "GTF2H4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UMS4-1", "protein_name": "Pre-mRNA-processing factor 19", "gene_name": "PRPF19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19447-1", "protein_name": "General transcription and DNA repair factor IIH helicase/translocase subunit XPB", "gene_name": "ERCC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13216-1", "protein_name": "DNA excision repair protein ERCC-8", "gene_name": "ERCC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZYL4-1", "protein_name": "General transcription factor IIH subunit 5", "gene_name": "GTF2H5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52435-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB11-a", "gene_name": "POLR2J", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36954-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB9", "gene_name": "POLR2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19388-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53803-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52434-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC3", "gene_name": "POLR2H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62487-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB7", "gene_name": "POLR2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93009-1", "protein_name": "Ubiquitin C-terminal hydrolase 7", "gene_name": "USP7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16531-1", "protein_name": "DNA damage-binding protein 1", "gene_name": "DDB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62875-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC5", "gene_name": "POLR2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19387-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32780-1", "protein_name": "General transcription factor IIH subunit 1", "gene_name": "GTF2H1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23193-1", "protein_name": "Transcription elongation factor A protein 1", "gene_name": "TCEA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2YD98-1", "protein_name": "UV-stimulated scaffold protein A", "gene_name": "UVSSA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13889-1", "protein_name": "General transcription factor IIH subunit 3", "gene_name": "GTF2H3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62877-1", "protein_name": "E3 ubiquitin-protein ligase RBX1", "gene_name": "RBX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q03468-1", "protein_name": "DNA excision repair protein ERCC-6", "gene_name": "ERCC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18074-1", "protein_name": "General transcription and DNA repair factor IIH helicase subunit XPD", "gene_name": "ERCC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51948-1", "protein_name": "CDK-activating kinase assembly factor MAT1", "gene_name": "MNAT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51946-1", "protein_name": "Cyclin-H", "gene_name": "CCNH", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13619-1", "protein_name": "Cullin-4A", "gene_name": "CUL4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13620-2", "protein_name": "Cullin-4B", "gene_name": "CUL4B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50613-1", "protein_name": "Cyclin-dependent kinase 7", "gene_name": "CDK7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG47-1", "protein_name": "Polyubiquitin-B", "gene_name": "UBB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55199-1", "protein_name": "RNA polymerase II elongation factor ELL", "gene_name": "ELL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG48-1", "protein_name": "Polyubiquitin-C", "gene_name": "UBC", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P30876", "url": "https://www.uniprot.org/uniprotkb/P30876" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.23906714", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 42 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Enhanced chromatin dynamics by FACT promotes transcriptional restart after UV-induced DNA damage.", "journal": "Molecular cell", "date": "2013", "authors": "Dinant C, Ampatziadis-Michailidis G, Lans H, Tresini M, Lagarou A, Grosbart M, Theil AF, van Cappellen WA, Kimura H, Bartek J, Fousteri M, Houtsmuller AB, Vermeulen W, Marteijn JA", "reference": { "type": "PubMed", "id": "23973375", "url": "https://pubmed.ncbi.nlm.nih.gov/23973375" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P30876-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB2", "gene_name": "POLR2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61218-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC2", "gene_name": "POLR2F", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15514-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB4", "gene_name": "POLR2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24928-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB1", "gene_name": "POLR2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60306-1", "protein_name": "RNA helicase aquarius", "gene_name": "AQR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNP9-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase E", "gene_name": "PPIE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9ULR0-3", "protein_name": "Pre-mRNA-splicing factor ISY1 homolog", "gene_name": "ISY1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96NB3-1", "protein_name": "Zinc finger protein 830", "gene_name": "ZNF830", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCS7-1", "protein_name": "Pre-mRNA-splicing factor SYF1", "gene_name": "XAB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13888-1", "protein_name": "General transcription factor IIH subunit 2", "gene_name": "GTF2H2C_2; GTF2H2C; GTF2H2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92759-1", "protein_name": "General transcription factor IIH subunit 4", "gene_name": "GTF2H4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UMS4-1", "protein_name": "Pre-mRNA-processing factor 19", "gene_name": "PRPF19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19447-1", "protein_name": "General transcription and DNA repair factor IIH helicase/translocase subunit XPB", "gene_name": "ERCC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13216-1", "protein_name": "DNA excision repair protein ERCC-8", "gene_name": "ERCC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZYL4-1", "protein_name": "General transcription factor IIH subunit 5", "gene_name": "GTF2H5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52435-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB11-a", "gene_name": "POLR2J", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36954-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB9", "gene_name": "POLR2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19388-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53803-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52434-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC3", "gene_name": "POLR2H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62487-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB7", "gene_name": "POLR2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93009-1", "protein_name": "Ubiquitin C-terminal hydrolase 7", "gene_name": "USP7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16531-1", "protein_name": "DNA damage-binding protein 1", "gene_name": "DDB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62875-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC5", "gene_name": "POLR2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19387-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32780-1", "protein_name": "General transcription factor IIH subunit 1", "gene_name": "GTF2H1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23193-1", "protein_name": "Transcription elongation factor A protein 1", "gene_name": "TCEA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2YD98-1", "protein_name": "UV-stimulated scaffold protein A", "gene_name": "UVSSA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13889-1", "protein_name": "General transcription factor IIH subunit 3", "gene_name": "GTF2H3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62877-1", "protein_name": "E3 ubiquitin-protein ligase RBX1", "gene_name": "RBX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q03468-1", "protein_name": "DNA excision repair protein ERCC-6", "gene_name": "ERCC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18074-1", "protein_name": "General transcription and DNA repair factor IIH helicase subunit XPD", "gene_name": "ERCC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51948-1", "protein_name": "CDK-activating kinase assembly factor MAT1", "gene_name": "MNAT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51946-1", "protein_name": "Cyclin-H", "gene_name": "CCNH", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13619-1", "protein_name": "Cullin-4A", "gene_name": "CUL4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13620-2", "protein_name": "Cullin-4B", "gene_name": "CUL4B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50613-1", "protein_name": "Cyclin-dependent kinase 7", "gene_name": "CDK7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG47-1", "protein_name": "Polyubiquitin-B", "gene_name": "UBB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55199-1", "protein_name": "RNA polymerase II elongation factor ELL", "gene_name": "ELL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG48-1", "protein_name": "Polyubiquitin-C", "gene_name": "UBC", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P30876", "url": "https://www.uniprot.org/uniprotkb/P30876" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.23973375", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 42 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "PIWI-interacting RNAs (piRNAs) - a mouse testis perspective.", "journal": "Biochemistry. Biokhimiia", "date": "2013", "authors": "Bortvin A", "reference": { "type": "PubMed", "id": "23980886", "url": "https://pubmed.ncbi.nlm.nih.gov/23980886" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P30876-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB2", "gene_name": "POLR2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61218-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC2", "gene_name": "POLR2F", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15514-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB4", "gene_name": "POLR2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24928-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB1", "gene_name": "POLR2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q587J7-1", "protein_name": "Putative ATP-dependent RNA helicase TDRD12", "gene_name": "TDRD12", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60522-1", "protein_name": "Tudor domain-containing protein 6", "gene_name": "TDRD6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5T8I9-1", "protein_name": "Small RNA 2'-O-methyltransferase", "gene_name": "HENMT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N2A8-1", "protein_name": "Mitochondrial cardiolipin hydrolase", "gene_name": "PLD6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52435-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB11-a", "gene_name": "POLR2J", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36954-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB9", "gene_name": "POLR2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19388-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53803-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52434-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC3", "gene_name": "POLR2H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62487-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB7", "gene_name": "POLR2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WWH4-1", "protein_name": "Ankyrin repeat, SAM and basic leucine zipper domain-containing protein 1", "gene_name": "ASZ1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96J94-1", "protein_name": "Piwi-like protein 1", "gene_name": "PIWIL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62875-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC5", "gene_name": "POLR2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19387-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75344-1", "protein_name": "Inactive peptidyl-prolyl cis-trans isomerase FKBP6", "gene_name": "FKBP6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NQI0-1", "protein_name": "Probable ATP-dependent RNA helicase DDX4", "gene_name": "DDX4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96JY0-1", "protein_name": "Protein maelstrom homolog", "gene_name": "MAEL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TC59-1", "protein_name": "Piwi-like protein 2", "gene_name": "PIWIL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXT6-1", "protein_name": "RNA helicase Mov10l1", "gene_name": "MOV10L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07900-1", "protein_name": "Heat shock protein HSP 90-alpha", "gene_name": "HSP90AA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z3Z4-1", "protein_name": "Piwi-like protein 4", "gene_name": "PIWIL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10243-1", "protein_name": "Myb-related protein A", "gene_name": "MYBL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2W6-2", "protein_name": "Tudor and KH domain-containing protein", "gene_name": "TDRKH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NDG6-1", "protein_name": "ATP-dependent RNA helicase TDRD9", "gene_name": "TDRD9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXT4-1", "protein_name": "Tudor domain-containing protein 1", "gene_name": "TDRD1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P30876", "url": "https://www.uniprot.org/uniprotkb/P30876" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.23980886", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 29 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": 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"glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Ago1 Interacts with RNA polymerase II and binds to the promoters of actively transcribed genes in human cancer cells.", "journal": "PLoS genetics", "date": "2013", "authors": "Huang V, Zheng J, Qi Z, Wang J, Place RF, Yu J, Li H, Li LC", "reference": { "type": "PubMed", "id": "24086155", "url": "https://pubmed.ncbi.nlm.nih.gov/24086155" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P30876-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB2", "gene_name": "POLR2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61218-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC2", "gene_name": "POLR2F", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15514-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB4", "gene_name": "POLR2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62826-1", "protein_name": "GTP-binding nuclear protein Ran", "gene_name": "RAN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UL18-1", "protein_name": "Protein argonaute-1", "gene_name": "AGO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24928-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB1", "gene_name": "POLR2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52435-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB11-a", "gene_name": "POLR2J", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36954-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB9", "gene_name": "POLR2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19388-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53803-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52434-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC3", "gene_name": "POLR2H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62487-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB7", "gene_name": "POLR2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84243-1", "protein_name": "Histone H3.3", "gene_name": "H3-3A; H3-3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62875-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC5", "gene_name": "POLR2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19387-1", "protein_name": "DNA-directed RNA 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"protein_name": "Trinucleotide repeat-containing gene 6A protein", "gene_name": "TNRC6A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71DI3-1", "protein_name": "Histone H3.2", "gene_name": "H3C13; H3C14; H3C15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16104-1", "protein_name": "Histone H2AX", "gene_name": "H2AX", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33778-1", "protein_name": "Histone H2B type 1-B", "gene_name": "H2BC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P58876-1", "protein_name": "Histone H2B type 1-D", "gene_name": "H2BC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A08-1", "protein_name": "Histone H2B type 1-A", "gene_name": "H2BC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23527-1", "protein_name": "Histone H2B type 1-O", "gene_name": "H2BC17", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0C5Y9-1", "protein_name": "Histone H2A-Bbd type 1", "gene_name": "H2AB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTM1-1", "protein_name": "Histone H2A.J", "gene_name": "H2AJ", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60814-1", "protein_name": "Histone H2B type 1-K", "gene_name": "H2BC12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93077-1", "protein_name": "Histone H2A type 1-C", "gene_name": "H2AC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93079-1", "protein_name": "Histone H2B type 1-H", "gene_name": "H2BC9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99879-1", "protein_name": "Histone H2B type 1-M", "gene_name": "H2BC14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71UI9-1", "protein_name": "Histone H2A.V", "gene_name": "H2AZ2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04908-1", "protein_name": "Histone H2A type 1-B/E", "gene_name": "H2AC4; H2AC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06899-1", "protein_name": "Histone H2B type 1-J", "gene_name": "H2BC11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20671-1", "protein_name": "Histone H2A type 1-D", "gene_name": "H2AC7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57053-1", "protein_name": "Histone H2B type F-S", "gene_name": "H2BC12L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16777-1", "protein_name": "Histone H2A type 2-C", "gene_name": "H2AC20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6FI13-1", "protein_name": "Histone H2A type 2-A", "gene_name": "H2AC18; H2AC19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N257-1", "protein_name": "Histone H2B type 3-B", "gene_name": "H2BC26", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99877-1", "protein_name": "Histone H2B type 1-N", "gene_name": "H2BC15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99878-1", "protein_name": "Histone H2A type 1-J", "gene_name": "H2AC14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99880-1", "protein_name": "Histone H2B type 1-L", "gene_name": "H2BC13", "tax_name": "Human" } ], "species": [ { "name": "Homo 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[] } ] }, { "title": "ELL, a novel TFIIH partner, is involved in transcription restart after DNA repair.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "2013", "authors": "Mourgues S, Gautier V, Lagarou A, Bordier C, Mourcet A, Slingerland J, Kaddoum L, Coin F, Vermeulen W, Gonzales de Peredo A, Monsarrat B, Mari PO, Giglia-Mari G", "reference": { "type": "PubMed", "id": "24127601", "url": "https://pubmed.ncbi.nlm.nih.gov/24127601" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P30876-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB2", "gene_name": "POLR2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61218-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC2", "gene_name": "POLR2F", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15514-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB4", "gene_name": "POLR2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24928-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB1", "gene_name": "POLR2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60306-1", "protein_name": "RNA helicase aquarius", "gene_name": "AQR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNS2-1", "protein_name": "COP9 signalosome complex subunit 3", "gene_name": "COPS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNP9-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase E", "gene_name": "PPIE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9ULR0-3", "protein_name": "Pre-mRNA-splicing factor ISY1 homolog", "gene_name": "ISY1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96NB3-1", "protein_name": "Zinc finger protein 830", "gene_name": "ZNF830", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCS7-1", "protein_name": "Pre-mRNA-splicing factor SYF1", "gene_name": "XAB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13888-1", "protein_name": "General transcription factor IIH subunit 2", "gene_name": "GTF2H2C_2; GTF2H2C; GTF2H2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92759-1", "protein_name": "General transcription factor IIH subunit 4", "gene_name": "GTF2H4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UMS4-1", "protein_name": "Pre-mRNA-processing factor 19", "gene_name": "PRPF19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19447-1", "protein_name": "General transcription and DNA repair factor IIH helicase/translocase subunit XPB", "gene_name": "ERCC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13216-1", "protein_name": "DNA excision repair protein ERCC-8", "gene_name": "ERCC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZYL4-1", "protein_name": "General transcription factor IIH subunit 5", "gene_name": "GTF2H5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBW8-1", "protein_name": "COP9 signalosome complex subunit 7a", "gene_name": "COPS7A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99627-1", "protein_name": "COP9 signalosome complex subunit 8", "gene_name": "COPS8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52435-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB11-a", "gene_name": "POLR2J", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36954-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB9", "gene_name": "POLR2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19388-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53803-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52434-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC3", "gene_name": "POLR2H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62487-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB7", "gene_name": "POLR2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93009-1", "protein_name": "Ubiquitin C-terminal hydrolase 7", "gene_name": "USP7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16531-1", "protein_name": "DNA damage-binding protein 1", "gene_name": "DDB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62875-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC5", "gene_name": "POLR2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19387-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61201-1", "protein_name": "COP9 signalosome complex subunit 2", "gene_name": "COPS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32780-1", "protein_name": "General transcription factor IIH subunit 1", "gene_name": "GTF2H1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23193-1", "protein_name": "Transcription elongation factor A protein 1", "gene_name": "TCEA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2YD98-1", "protein_name": "UV-stimulated scaffold protein A", "gene_name": "UVSSA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13889-1", "protein_name": "General transcription factor IIH subunit 3", "gene_name": "GTF2H3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H9Q2-1", "protein_name": "COP9 signalosome complex subunit 7b", "gene_name": "COPS7B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13098-4", "protein_name": "COP9 signalosome complex subunit 1", "gene_name": "GPS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BT78-1", "protein_name": "COP9 signalosome complex subunit 4", "gene_name": "COPS4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62877-1", "protein_name": "E3 ubiquitin-protein ligase RBX1", "gene_name": "RBX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q03468-1", "protein_name": "DNA excision repair protein ERCC-6", "gene_name": "ERCC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18074-1", "protein_name": "General transcription and DNA repair factor IIH helicase subunit XPD", "gene_name": "ERCC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51948-1", "protein_name": "CDK-activating kinase assembly factor MAT1", "gene_name": "MNAT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51946-1", "protein_name": "Cyclin-H", "gene_name": "CCNH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7L5N1-1", "protein_name": "COP9 signalosome complex subunit 6", "gene_name": "COPS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92905-1", "protein_name": "COP9 signalosome complex subunit 5", "gene_name": "COPS5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13619-1", "protein_name": "Cullin-4A", "gene_name": "CUL4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13620-2", "protein_name": "Cullin-4B", "gene_name": "CUL4B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50613-1", "protein_name": "Cyclin-dependent kinase 7", "gene_name": "CDK7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG47-1", "protein_name": "Polyubiquitin-B", "gene_name": "UBB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23025-1", "protein_name": "DNA repair protein complementing XP-A cells", "gene_name": "XPA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55199-1", "protein_name": "RNA polymerase II elongation factor ELL", "gene_name": "ELL", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG48-1", "protein_name": "Polyubiquitin-C", "gene_name": "UBC", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", 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cell nuclei.", "journal": "Cell reports", "date": "2014", "authors": "Gagnon KT, Li L, Chu Y, Janowski BA, Corey DR", "reference": { "type": "PubMed", "id": "24388755", "url": "https://pubmed.ncbi.nlm.nih.gov/24388755" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P30876-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB2", "gene_name": "POLR2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61218-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC2", "gene_name": "POLR2F", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15514-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB4", "gene_name": "POLR2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62826-1", "protein_name": "GTP-binding nuclear protein Ran", "gene_name": "RAN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UL18-1", "protein_name": "Protein argonaute-1", "gene_name": "AGO1", "tax_name": "Human" }, { 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"uniprot_canonical_ac": "Q16778-1", "protein_name": "Histone H2B type 2-E", "gene_name": "H2BC21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62807-1", "protein_name": "Histone H2B type 1-C/E/F/G/I", "gene_name": "H2BC10; H2BC4; H2BC6; H2BC7; H2BC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15397-1", "protein_name": "Importin-8", "gene_name": "IPO8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NDV7-1", "protein_name": "Trinucleotide repeat-containing gene 6A protein", "gene_name": "TNRC6A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71DI3-1", "protein_name": "Histone H3.2", "gene_name": "H3C13; H3C14; H3C15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16104-1", "protein_name": "Histone H2AX", "gene_name": "H2AX", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33778-1", "protein_name": "Histone H2B type 1-B", "gene_name": "H2BC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P58876-1", "protein_name": "Histone H2B type 1-D", 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}, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { 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"uniprot_canonical_ac": "P52434-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC3", "gene_name": "POLR2H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62487-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB7", "gene_name": "POLR2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35251-1", "protein_name": "Replication factor C subunit 1", "gene_name": "RFC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93009-1", "protein_name": "Ubiquitin C-terminal hydrolase 7", "gene_name": "USP7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07992-1", "protein_name": "DNA excision repair protein ERCC-1", "gene_name": "ERCC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16531-1", "protein_name": "DNA damage-binding protein 1", "gene_name": "DDB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62875-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC5", "gene_name": "POLR2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19387-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27694-1", "protein_name": "Replication protein A 70 kDa DNA-binding subunit", "gene_name": "RPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32780-1", "protein_name": "General transcription factor IIH subunit 1", "gene_name": "GTF2H1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23193-1", "protein_name": "Transcription elongation factor A protein 1", "gene_name": "TCEA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2YD98-1", "protein_name": "UV-stimulated scaffold protein A", "gene_name": "UVSSA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35250-1", "protein_name": "Replication factor C subunit 2", "gene_name": "RFC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13889-1", "protein_name": "General transcription factor IIH subunit 3", "gene_name": "GTF2H3", "tax_name": 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"o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Importin 8 regulates the transport of mature microRNAs into the cell nucleus.", "journal": "The Journal of biological chemistry", "date": "2014", "authors": "Wei Y, Li L, Wang D, Zhang CY, Zen K", "reference": { "type": "PubMed", "id": "24596094", "url": 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"protein_name": "DNA-directed RNA polymerase II subunit RPB11-a", "gene_name": "POLR2J", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36954-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB9", "gene_name": "POLR2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19388-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53803-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52434-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC3", "gene_name": "POLR2H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62487-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB7", "gene_name": "POLR2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P84243-1", "protein_name": "Histone H3.3", "gene_name": "H3-3A; H3-3B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62875-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC5", "gene_name": "POLR2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19387-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62805-1", "protein_name": "Histone H4", "gene_name": "H4C11; H4C12; H4C13; H4C14; H4C15; H4C16; H4C1; H4C2; H4C3; H4C4; H4C5; H4C6; H4C8; H4C9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68431-1", "protein_name": "Histone H3.1", "gene_name": "H3C10; H3C11; H3C12; H3C1; H3C2; H3C3; H3C4; H3C6; H3C7; H3C8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKV8-1", "protein_name": "Protein argonaute-2", "gene_name": "AGO2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16778-1", "protein_name": "Histone H2B type 2-E", "gene_name": "H2BC21", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62807-1", "protein_name": "Histone H2B type 1-C/E/F/G/I", "gene_name": "H2BC10; H2BC4; H2BC6; H2BC7; H2BC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15397-1", "protein_name": "Importin-8", "gene_name": "IPO8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NDV7-1", "protein_name": "Trinucleotide repeat-containing gene 6A protein", "gene_name": "TNRC6A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71DI3-1", "protein_name": "Histone H3.2", "gene_name": "H3C13; H3C14; H3C15", "tax_name": "Human" }, { "uniprot_canonical_ac": "P16104-1", "protein_name": "Histone H2AX", "gene_name": "H2AX", "tax_name": "Human" }, { "uniprot_canonical_ac": "P33778-1", "protein_name": "Histone H2B type 1-B", "gene_name": "H2BC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P58876-1", "protein_name": "Histone H2B type 1-D", "gene_name": "H2BC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96A08-1", "protein_name": "Histone H2B type 1-A", "gene_name": "H2BC1", "tax_name": "Human" }, { 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"P04908-1", "protein_name": "Histone H2A type 1-B/E", "gene_name": "H2AC4; H2AC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06899-1", "protein_name": "Histone H2B type 1-J", "gene_name": "H2BC11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20671-1", "protein_name": "Histone H2A type 1-D", "gene_name": "H2AC7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57053-1", "protein_name": "Histone H2B type F-S", "gene_name": "H2BC12L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16777-1", "protein_name": "Histone H2A type 2-C", "gene_name": "H2AC20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6FI13-1", "protein_name": "Histone H2A type 2-A", "gene_name": "H2AC18; H2AC19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N257-1", "protein_name": "Histone H2B type 3-B", "gene_name": "H2BC26", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99877-1", "protein_name": "Histone H2B type 1-N", "gene_name": "H2BC15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99878-1", "protein_name": "Histone H2A type 1-J", "gene_name": "H2AC14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99880-1", "protein_name": "Histone H2B type 1-L", "gene_name": "H2BC13", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7TMY7-1", "protein_name": "Importin-8", "gene_name": "Ipo8", "tax_name": "Mouse" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P30876", "url": "https://www.uniprot.org/uniprotkb/P30876" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.24596094", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 46 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", 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"glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "piClust: a density based piRNA clustering algorithm.", "journal": "Computational biology and chemistry", "date": "2014", "authors": "Jung I, Park JC, Kim S", "reference": { "type": "PubMed", "id": "24656595", "url": "https://pubmed.ncbi.nlm.nih.gov/24656595" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P30876-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB2", "gene_name": "POLR2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61218-1", "protein_name": "DNA-directed RNA polymerases I, 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polymerase II subunit RPB11-a", "gene_name": "POLR2J", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36954-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB9", "gene_name": "POLR2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19388-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53803-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52434-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC3", "gene_name": "POLR2H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62487-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB7", "gene_name": "POLR2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WWH4-1", "protein_name": "Ankyrin repeat, SAM and basic leucine zipper domain-containing protein 1", "gene_name": "ASZ1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96J94-1", "protein_name": "Piwi-like protein 1", "gene_name": "PIWIL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62875-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC5", "gene_name": "POLR2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19387-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75344-1", "protein_name": "Inactive peptidyl-prolyl cis-trans isomerase FKBP6", "gene_name": "FKBP6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NQI0-1", "protein_name": "Probable ATP-dependent RNA helicase DDX4", "gene_name": "DDX4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96JY0-1", "protein_name": "Protein maelstrom homolog", "gene_name": "MAEL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TC59-1", "protein_name": "Piwi-like protein 2", "gene_name": "PIWIL2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXT6-1", "protein_name": "RNA helicase Mov10l1", "gene_name": "MOV10L1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07900-1", "protein_name": "Heat shock protein HSP 90-alpha", "gene_name": "HSP90AA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z3Z4-1", "protein_name": "Piwi-like protein 4", "gene_name": "PIWIL4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P10243-1", "protein_name": "Myb-related protein A", "gene_name": "MYBL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2W6-2", "protein_name": "Tudor and KH domain-containing protein", "gene_name": "TDRKH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NDG6-1", "protein_name": "ATP-dependent RNA helicase TDRD9", "gene_name": "TDRD9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BXT4-1", "protein_name": "Tudor domain-containing protein 1", "gene_name": "TDRD1", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": 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"n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": 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"uniprot_canonical_ac": "P32780-1", "protein_name": "General transcription factor IIH subunit 1", "gene_name": "GTF2H1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23193-1", "protein_name": "Transcription elongation factor A protein 1", "gene_name": "TCEA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2YD98-1", "protein_name": "UV-stimulated scaffold protein A", "gene_name": "UVSSA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13889-1", "protein_name": "General transcription factor IIH subunit 3", "gene_name": "GTF2H3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H9Q2-1", "protein_name": "COP9 signalosome complex subunit 7b", "gene_name": "COPS7B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92466-1", "protein_name": "DNA damage-binding protein 2", "gene_name": "DDB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13098-4", "protein_name": "COP9 signalosome complex subunit 1", "gene_name": "GPS1", "tax_name": "Human" }, { 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ubiquitin-related modifier 2", "gene_name": "SUMO2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61088-1", "protein_name": "Ubiquitin-conjugating enzyme E2 N", "gene_name": "UBE2N", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92905-1", "protein_name": "COP9 signalosome complex subunit 5", "gene_name": "COPS5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZNA4-1", "protein_name": "E3 ubiquitin-protein ligase Arkadia", "gene_name": "RNF111", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13619-1", "protein_name": "Cullin-4A", "gene_name": "CUL4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13620-2", "protein_name": "Cullin-4B", "gene_name": "CUL4B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15819-1", "protein_name": "Ubiquitin-conjugating enzyme E2 variant 2", "gene_name": "UBE2V2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q70EL2-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 45", "gene_name": "USP45", "tax_name": "Human" }, 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"uniprot_canonical_ac": "Q16777-1", "protein_name": "Histone H2A type 2-C", "gene_name": "H2AC20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6FI13-1", "protein_name": "Histone H2A type 2-A", "gene_name": "H2AC18; H2AC19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N257-1", "protein_name": "Histone H2B type 3-B", "gene_name": "H2BC26", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99877-1", "protein_name": "Histone H2B type 1-N", "gene_name": "H2BC15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99878-1", "protein_name": "Histone H2A type 1-J", "gene_name": "H2AC14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99880-1", "protein_name": "Histone H2B type 1-L", "gene_name": "H2BC13", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P30876", "url": "https://www.uniprot.org/uniprotkb/P30876" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.25313066", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 45 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 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"protein_name": "Protein argonaute-2", "gene_name": "AGO2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H9G7-1", "protein_name": "Protein argonaute-3", "gene_name": "AGO3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NRR4-1", "protein_name": "Ribonuclease 3", "gene_name": "DROSHA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WYQ5-1", "protein_name": "Microprocessor complex subunit DGCR8", "gene_name": "DGCR8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z5W3-1", "protein_name": "RNA 5'-monophosphate methyltransferase", "gene_name": "BCDIN3D", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P30876", "url": "https://www.uniprot.org/uniprotkb/P30876" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.25326327", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], 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"uniprot_canonical_ac": "P19388-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53803-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52434-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC3", "gene_name": "POLR2H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62487-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB7", "gene_name": "POLR2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93009-1", "protein_name": "Ubiquitin C-terminal hydrolase 7", "gene_name": "USP7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16531-1", "protein_name": "DNA damage-binding protein 1", "gene_name": "DDB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62875-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC5", "gene_name": "POLR2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19387-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61201-1", "protein_name": "COP9 signalosome complex subunit 2", "gene_name": "COPS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32780-1", "protein_name": "General transcription factor IIH subunit 1", "gene_name": "GTF2H1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23193-1", "protein_name": "Transcription elongation factor A protein 1", "gene_name": "TCEA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2YD98-1", "protein_name": "UV-stimulated scaffold protein A", "gene_name": "UVSSA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13889-1", "protein_name": "General transcription factor IIH subunit 3", "gene_name": "GTF2H3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H9Q2-1", "protein_name": "COP9 signalosome complex subunit 7b", "gene_name": "COPS7B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13098-4", "protein_name": "COP9 signalosome complex subunit 1", "gene_name": "GPS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BT78-1", "protein_name": "COP9 signalosome complex subunit 4", "gene_name": "COPS4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62877-1", "protein_name": "E3 ubiquitin-protein ligase RBX1", "gene_name": "RBX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q03468-1", "protein_name": "DNA excision repair protein ERCC-6", "gene_name": "ERCC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18074-1", "protein_name": "General transcription and DNA repair factor IIH helicase subunit XPD", "gene_name": "ERCC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51948-1", "protein_name": "CDK-activating kinase assembly factor MAT1", "gene_name": "MNAT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51946-1", "protein_name": "Cyclin-H", "gene_name": "CCNH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7L5N1-1", "protein_name": "COP9 signalosome complex subunit 6", "gene_name": "COPS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92905-1", "protein_name": "COP9 signalosome complex subunit 5", "gene_name": "COPS5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13619-1", "protein_name": "Cullin-4A", "gene_name": "CUL4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13620-2", "protein_name": "Cullin-4B", "gene_name": "CUL4B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50613-1", "protein_name": "Cyclin-dependent kinase 7", "gene_name": "CDK7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG47-1", "protein_name": "Polyubiquitin-B", "gene_name": "UBB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal 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"Human" }, { "uniprot_canonical_ac": "P0C5Y9-1", "protein_name": "Histone H2A-Bbd type 1", "gene_name": "H2AB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BTM1-1", "protein_name": "Histone H2A.J", "gene_name": "H2AJ", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60814-1", "protein_name": "Histone H2B type 1-K", "gene_name": "H2BC12", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93077-1", "protein_name": "Histone H2A type 1-C", "gene_name": "H2AC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93079-1", "protein_name": "Histone H2B type 1-H", "gene_name": "H2BC9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99879-1", "protein_name": "Histone H2B type 1-M", "gene_name": "H2BC14", "tax_name": "Human" }, { "uniprot_canonical_ac": "P46100-1", "protein_name": "Chromatin remodeler ATRX", "gene_name": "ATRX", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71UI9-1", "protein_name": "Histone H2A.V", "gene_name": "H2AZ2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04908-1", "protein_name": "Histone H2A type 1-B/E", "gene_name": "H2AC4; H2AC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06899-1", "protein_name": "Histone H2B type 1-J", "gene_name": "H2BC11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20671-1", "protein_name": "Histone H2A type 1-D", "gene_name": "H2AC7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57053-1", "protein_name": "Histone H2B type F-S", "gene_name": "H2BC12L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16777-1", "protein_name": "Histone H2A type 2-C", "gene_name": "H2AC20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6FI13-1", "protein_name": "Histone H2A type 2-A", "gene_name": "H2AC18; H2AC19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N257-1", "protein_name": "Histone H2B type 3-B", "gene_name": "H2BC26", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99877-1", "protein_name": "Histone H2B type 1-N", "gene_name": "H2BC15", "tax_name": 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "DICER-ARGONAUTE2 complex in continuous fluorogenic assays of RNA interference enzymes.", "journal": "PloS one", "date": "2015", "authors": 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"tax_name": "Human" }, { "uniprot_canonical_ac": "P19388-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53803-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52434-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC3", "gene_name": "POLR2H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62487-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB7", "gene_name": "POLR2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62875-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC5", "gene_name": "POLR2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19387-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99598-1", "protein_name": "Translin-associated protein X", "gene_name": "TSNAX", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKV8-1", "protein_name": "Protein argonaute-2", "gene_name": "AGO2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H9G7-1", "protein_name": "Protein argonaute-3", "gene_name": "AGO3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15631-1", "protein_name": "Translin", "gene_name": "TSN", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NRR4-1", "protein_name": "Ribonuclease 3", "gene_name": "DROSHA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8WYQ5-1", "protein_name": "Microprocessor complex subunit DGCR8", "gene_name": "DGCR8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z5W3-1", "protein_name": "RNA 5'-monophosphate methyltransferase", "gene_name": "BCDIN3D", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P30876", "url": 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Decrease in the Amount of Telomeric Cohesin and Level of Telomere Transcription in Human Glioma Cells.", "journal": "Molecular and cellular biology", "date": "2015", "authors": "Eid R, Demattei MV, Episkopou H, Auge-Gouillou C, Decottignies A, Grandin N, Charbonneau M", "reference": { "type": "PubMed", "id": "26055325", "url": "https://pubmed.ncbi.nlm.nih.gov/26055325" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P30876-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB2", "gene_name": "POLR2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61218-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC2", "gene_name": "POLR2F", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15514-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB4", "gene_name": "POLR2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UER7-1", "protein_name": "Death domain-associated protein 6", "gene_name": "DAXX", 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"sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": 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functions as a growth regulator in human glioblastoma.", "journal": "Biochemical and biophysical research communications", "date": "2023-09-24", "authors": "Li Xiao-Lu, Xie Yi, Chen Yan-Ling, Zhang Zi-Mu, Tao Yan-Fang, Li Gen, Wu Di, Wang Hai-Rong, Zhuo Ran, Pan Jing-Jing, Yu Juan-Juan, Jia Si-Qi, Zhang Zheng, Feng Chen-Xi, Wang Jian-Wei, Fang Fang, Qian Guang-Hui, Lu Jun, Hu Shao-Yan, Li Zhi-Heng, Pan Jian", "reference": { "type": "PubMed", "id": "37423037", "url": "https://pubmed.ncbi.nlm.nih.gov/37423037" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P30876-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB2", "gene_name": "POLR2B", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P30876", "url": "https://www.uniprot.org/uniprotkb/P30876" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": 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"count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Transcript cleavage by RNA polymerase II arrested by a cyclobutane pyrimidine dimer in the DNA template.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "1994", "authors": "Donahue BA, Yin S, Taylor JS, Reines D, Hanawalt PC", "reference": { "type": "PubMed", "id": "8078911", "url": "https://pubmed.ncbi.nlm.nih.gov/8078911" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P30876-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB2", "gene_name": "POLR2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61218-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC2", "gene_name": "POLR2F", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15514-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB4", 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"protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52434-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC3", "gene_name": "POLR2H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62487-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB7", "gene_name": "POLR2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93009-1", "protein_name": "Ubiquitin C-terminal hydrolase 7", "gene_name": "USP7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16531-1", "protein_name": "DNA damage-binding protein 1", "gene_name": "DDB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62875-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC5", "gene_name": "POLR2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19387-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": 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"uniprot_canonical_ac": "Q9BT78-1", "protein_name": "COP9 signalosome complex subunit 4", "gene_name": "COPS4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62877-1", "protein_name": "E3 ubiquitin-protein ligase RBX1", "gene_name": "RBX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q03468-1", "protein_name": "DNA excision repair protein ERCC-6", "gene_name": "ERCC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18074-1", "protein_name": "General transcription and DNA repair factor IIH helicase subunit XPD", "gene_name": "ERCC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51948-1", "protein_name": "CDK-activating kinase assembly factor MAT1", "gene_name": "MNAT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51946-1", "protein_name": "Cyclin-H", "gene_name": "CCNH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7L5N1-1", "protein_name": "COP9 signalosome complex subunit 6", "gene_name": "COPS6", "tax_name": "Human" }, { "uniprot_canonical_ac": 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"tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG48-1", "protein_name": "Polyubiquitin-C", "gene_name": "UBC", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P30876", "url": "https://www.uniprot.org/uniprotkb/P30876" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.8876179", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 51 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", 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"tax_name": "Human" }, { "uniprot_canonical_ac": "Q93079-1", "protein_name": "Histone H2B type 1-H", "gene_name": "H2BC9", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99879-1", "protein_name": "Histone H2B type 1-M", "gene_name": "H2BC14", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95373-1", "protein_name": "Importin-7", "gene_name": "IPO7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71UI9-1", "protein_name": "Histone H2A.V", "gene_name": "H2AZ2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04908-1", "protein_name": "Histone H2A type 1-B/E", "gene_name": "H2AC4; H2AC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06899-1", "protein_name": "Histone H2B type 1-J", "gene_name": "H2BC11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P20671-1", "protein_name": "Histone H2A type 1-D", "gene_name": "H2AC7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P57053-1", "protein_name": "Histone H2B type F-S", "gene_name": "H2BC12L", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16777-1", "protein_name": "Histone H2A type 2-C", "gene_name": "H2AC20", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6FI13-1", "protein_name": "Histone H2A type 2-A", "gene_name": "H2AC18; H2AC19", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N257-1", "protein_name": "Histone H2B type 3-B", "gene_name": "H2BC26", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99877-1", "protein_name": "Histone H2B type 1-N", "gene_name": "H2BC15", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99878-1", "protein_name": "Histone H2A type 1-J", "gene_name": "H2AC14", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99880-1", "protein_name": "Histone H2B type 1-L", "gene_name": "H2BC13", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P30876", "url": "https://www.uniprot.org/uniprotkb/P30876" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo 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{ "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Cockayne syndrome group B protein enhances elongation by RNA polymerase II.", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "date": "1997", "authors": "Selby CP, Sancar A", "reference": { "type": "PubMed", "id": "9326587", "url": "https://pubmed.ncbi.nlm.nih.gov/9326587" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P30876-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB2", "gene_name": "POLR2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61218-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC2", "gene_name": "POLR2F", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15514-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB4", "gene_name": "POLR2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24928-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB1", "gene_name": "POLR2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60306-1", "protein_name": "RNA helicase aquarius", "gene_name": "AQR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNS2-1", "protein_name": "COP9 signalosome complex subunit 3", "gene_name": "COPS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNP9-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase E", "gene_name": "PPIE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9ULR0-3", "protein_name": "Pre-mRNA-splicing factor ISY1 homolog", "gene_name": "ISY1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96NB3-1", "protein_name": "Zinc finger protein 830", "gene_name": "ZNF830", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCS7-1", "protein_name": "Pre-mRNA-splicing factor SYF1", "gene_name": "XAB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13888-1", "protein_name": "General transcription factor IIH subunit 2", "gene_name": "GTF2H2C_2; GTF2H2C; GTF2H2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92759-1", "protein_name": "General transcription factor IIH subunit 4", "gene_name": "GTF2H4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UMS4-1", "protein_name": "Pre-mRNA-processing factor 19", "gene_name": 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polymerase II subunit RPB9", "gene_name": "POLR2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19388-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53803-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52434-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC3", "gene_name": "POLR2H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62487-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB7", "gene_name": "POLR2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93009-1", "protein_name": "Ubiquitin C-terminal hydrolase 7", "gene_name": "USP7", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16531-1", "protein_name": "DNA damage-binding protein 1", "gene_name": "DDB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62875-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC5", "gene_name": "POLR2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19387-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61201-1", "protein_name": "COP9 signalosome complex subunit 2", "gene_name": "COPS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32780-1", "protein_name": "General transcription factor IIH subunit 1", "gene_name": "GTF2H1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23193-1", "protein_name": "Transcription elongation factor A protein 1", "gene_name": "TCEA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2YD98-1", "protein_name": "UV-stimulated scaffold protein A", "gene_name": "UVSSA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13889-1", "protein_name": "General transcription factor IIH subunit 3", "gene_name": "GTF2H3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H9Q2-1", "protein_name": "COP9 signalosome complex subunit 7b", "gene_name": "COPS7B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13098-4", "protein_name": "COP9 signalosome complex subunit 1", "gene_name": "GPS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BT78-1", "protein_name": "COP9 signalosome complex subunit 4", "gene_name": "COPS4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62877-1", "protein_name": "E3 ubiquitin-protein ligase RBX1", "gene_name": "RBX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q03468-1", "protein_name": "DNA excision repair protein ERCC-6", "gene_name": "ERCC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18074-1", "protein_name": "General transcription and DNA repair factor IIH helicase subunit XPD", "gene_name": "ERCC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51948-1", "protein_name": "CDK-activating kinase assembly factor MAT1", "gene_name": "MNAT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51946-1", "protein_name": "Cyclin-H", "gene_name": "CCNH", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7L5N1-1", "protein_name": "COP9 signalosome complex subunit 6", "gene_name": "COPS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92905-1", "protein_name": "COP9 signalosome complex subunit 5", "gene_name": "COPS5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13619-1", "protein_name": "Cullin-4A", "gene_name": "CUL4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13620-2", "protein_name": "Cullin-4B", "gene_name": "CUL4B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50613-1", "protein_name": "Cyclin-dependent kinase 7", "gene_name": "CDK7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG47-1", "protein_name": "Polyubiquitin-B", "gene_name": "UBB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23025-1", "protein_name": "DNA repair protein complementing XP-A cells", "gene_name": "XPA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG48-1", "protein_name": "Polyubiquitin-C", "gene_name": "UBC", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P30876", "url": "https://www.uniprot.org/uniprotkb/P30876" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.9326587", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 51 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", 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{ "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Solution structure of the DNA- and RPA-binding domain of the human repair factor XPA.", "journal": "Nature structural biology", "date": "1998", "authors": "Ikegami T, Kuraoka I, Saijo M, Kodo N, Kyogoku Y, Morikawa K, Tanaka K, Shirakawa M", "reference": { "type": "PubMed", "id": "9699634", "url": "https://pubmed.ncbi.nlm.nih.gov/9699634" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P30876-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB2", "gene_name": "POLR2B", "tax_name": 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"Human" }, { "uniprot_canonical_ac": "Q9UGN5-1", "protein_name": "Poly [ADP-ribose] polymerase 2", "gene_name": "PARP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZYL4-1", "protein_name": "General transcription factor IIH subunit 5", "gene_name": "GTF2H5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NRF9-1", "protein_name": "DNA polymerase epsilon subunit 3", "gene_name": "POLE3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBT6-1", "protein_name": "DNA polymerase kappa", "gene_name": "POLK", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35249-1", "protein_name": "Replication factor C subunit 4", "gene_name": "RFC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35244-1", "protein_name": "Replication protein A 14 kDa subunit", "gene_name": "RPA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52435-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB11-a", "gene_name": "POLR2J", "tax_name": "Human" }, { "uniprot_canonical_ac": 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"tax_name": "Human" }, { "uniprot_canonical_ac": "P07992-1", "protein_name": "DNA excision repair protein ERCC-1", "gene_name": "ERCC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16531-1", "protein_name": "DNA damage-binding protein 1", "gene_name": "DDB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62875-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC5", "gene_name": "POLR2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19387-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27694-1", "protein_name": "Replication protein A 70 kDa DNA-binding subunit", "gene_name": "RPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41208-1", "protein_name": "Centrin-2", "gene_name": "CETN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01831-1", "protein_name": "DNA repair protein complementing XP-C cells", "gene_name": "XPC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86WJ1-1", "protein_name": "ATP-dependent chromatin remodeler CHD1L", "gene_name": "CHD1L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32780-1", "protein_name": "General transcription factor IIH subunit 1", "gene_name": "GTF2H1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23193-1", "protein_name": "Transcription elongation factor A protein 1", "gene_name": "TCEA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2YD98-1", "protein_name": "UV-stimulated scaffold protein A", "gene_name": "UVSSA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35250-1", "protein_name": "Replication factor C subunit 2", "gene_name": "RFC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13889-1", "protein_name": "General transcription factor IIH subunit 3", "gene_name": "GTF2H3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92466-1", "protein_name": "DNA damage-binding protein 2", "gene_name": "DDB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62877-1", "protein_name": "E3 ubiquitin-protein ligase RBX1", "gene_name": "RBX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15054-1", "protein_name": "DNA polymerase delta subunit 3", "gene_name": "POLD3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q03468-1", "protein_name": "DNA excision repair protein ERCC-6", "gene_name": "ERCC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18074-1", "protein_name": "General transcription and DNA repair factor IIH helicase subunit XPD", "gene_name": "ERCC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49005-1", "protein_name": "DNA polymerase delta subunit 2", "gene_name": "POLD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51948-1", "protein_name": "CDK-activating kinase assembly factor MAT1", "gene_name": "MNAT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51946-1", "protein_name": "Cyclin-H", "gene_name": "CCNH", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15927-1", "protein_name": "Replication protein A 32 kDa subunit", "gene_name": "RPA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63279-1", "protein_name": "SUMO-conjugating enzyme UBC9", "gene_name": "UBE2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "P54725-1", "protein_name": "Lysine-specific demethylase RAD23A", "gene_name": "RAD23A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40938-1", "protein_name": "Replication factor C subunit 3", "gene_name": "RFC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09874-1", "protein_name": "Poly [ADP-ribose] polymerase 1", "gene_name": "PARP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12004-1", "protein_name": "DNA sliding clamp PCNA", "gene_name": "PCNA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63165-1", "protein_name": "Small ubiquitin-related modifier 1", "gene_name": "SUMO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75925-1", "protein_name": "E3 SUMO-protein ligase PIAS1", "gene_name": "PIAS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61956-1", "protein_name": "Small ubiquitin-related modifier 2", "gene_name": "SUMO2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61088-1", "protein_name": "Ubiquitin-conjugating enzyme E2 N", "gene_name": "UBE2N", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZNA4-1", "protein_name": "E3 ubiquitin-protein ligase Arkadia", "gene_name": "RNF111", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13619-1", "protein_name": "Cullin-4A", "gene_name": "CUL4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13620-2", "protein_name": "Cullin-4B", "gene_name": "CUL4B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40937-1", "protein_name": "Replication factor C subunit 5", "gene_name": "RFC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15819-1", "protein_name": "Ubiquitin-conjugating enzyme E2 variant 2", "gene_name": "UBE2V2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q70EL2-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 45", "gene_name": "USP45", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50613-1", "protein_name": "Cyclin-dependent kinase 7", "gene_name": "CDK7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG47-1", "protein_name": "Polyubiquitin-B", "gene_name": "UBB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92889-1", "protein_name": "DNA repair endonuclease XPF", "gene_name": "ERCC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23025-1", "protein_name": "DNA repair protein complementing XP-A cells", "gene_name": "XPA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6X2-1", "protein_name": "E3 SUMO-protein ligase PIAS3", "gene_name": "PIAS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG48-1", "protein_name": "Polyubiquitin-C", "gene_name": "UBC", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P30876", "url": "https://www.uniprot.org/uniprotkb/P30876" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.9699634", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 81 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "DNA-binding polarity of human replication protein A positions nucleases in nucleotide excision repair.", "journal": "Genes & development", "date": "1998", "authors": "de Laat WL, Appeldoorn E, Sugasawa K, Weterings E, Jaspers NG, Hoeijmakers JH", "reference": { "type": "PubMed", "id": "9716411", "url": "https://pubmed.ncbi.nlm.nih.gov/9716411" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P30876-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB2", "gene_name": "POLR2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61218-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC2", "gene_name": "POLR2F", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15514-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB4", "gene_name": "POLR2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "P55854-1", "protein_name": "Small ubiquitin-related modifier 3", "gene_name": "SUMO3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P56282-1", "protein_name": "DNA polymerase epsilon subunit 2", "gene_name": "POLE2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P54727-1", "protein_name": "Lysine-specific demethylase RAD23B", "gene_name": "RAD23B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24928-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB1", "gene_name": "POLR2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O60306-1", "protein_name": "RNA helicase aquarius", "gene_name": "AQR", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UNP9-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase E", "gene_name": "PPIE", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9ULR0-3", "protein_name": "Pre-mRNA-splicing factor ISY1 homolog", "gene_name": "ISY1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96NB3-1", "protein_name": "Zinc finger protein 830", "gene_name": "ZNF830", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCS7-1", "protein_name": "Pre-mRNA-splicing factor SYF1", "gene_name": "XAB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13888-1", "protein_name": "General transcription factor IIH subunit 2", "gene_name": "GTF2H2C_2; GTF2H2C; GTF2H2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92759-1", "protein_name": "General transcription factor IIH subunit 4", "gene_name": "GTF2H4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UMS4-1", "protein_name": "Pre-mRNA-processing factor 19", "gene_name": "PRPF19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19447-1", "protein_name": "General transcription and DNA repair factor IIH helicase/translocase subunit XPB", "gene_name": "ERCC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCU8-1", "protein_name": "DNA polymerase delta subunit 4", "gene_name": "POLD4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q07864-1", "protein_name": "DNA polymerase epsilon catalytic subunit A", "gene_name": "POLE", "tax_name": "Human" }, { "uniprot_canonical_ac": "P28340-1", "protein_name": "DNA polymerase delta catalytic subunit", "gene_name": "POLD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NR33-1", "protein_name": "DNA polymerase epsilon subunit 4", "gene_name": "POLE4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P28715-1", "protein_name": "DNA excision repair protein ERCC-5", "gene_name": "ERCC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13216-1", "protein_name": "DNA excision repair protein ERCC-8", "gene_name": "ERCC8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UGN5-1", "protein_name": "Poly [ADP-ribose] polymerase 2", "gene_name": "PARP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZYL4-1", "protein_name": "General transcription factor IIH subunit 5", "gene_name": "GTF2H5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NRF9-1", "protein_name": "DNA polymerase epsilon subunit 3", "gene_name": "POLE3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBT6-1", "protein_name": "DNA polymerase kappa", "gene_name": "POLK", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35249-1", "protein_name": "Replication factor C subunit 4", "gene_name": "RFC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35244-1", "protein_name": "Replication protein A 14 kDa subunit", "gene_name": "RPA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52435-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB11-a", "gene_name": "POLR2J", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36954-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB9", "gene_name": "POLR2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19388-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": 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"gene_name": "DDB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62875-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC5", "gene_name": "POLR2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19387-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27694-1", "protein_name": "Replication protein A 70 kDa DNA-binding subunit", "gene_name": "RPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41208-1", "protein_name": "Centrin-2", "gene_name": "CETN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q01831-1", "protein_name": "DNA repair protein complementing XP-C cells", "gene_name": "XPC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86WJ1-1", "protein_name": "ATP-dependent chromatin remodeler CHD1L", "gene_name": "CHD1L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32780-1", "protein_name": "General transcription factor IIH subunit 1", "gene_name": "GTF2H1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23193-1", "protein_name": "Transcription elongation factor A protein 1", "gene_name": "TCEA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2YD98-1", "protein_name": "UV-stimulated scaffold protein A", "gene_name": "UVSSA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35250-1", "protein_name": "Replication factor C subunit 2", "gene_name": "RFC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13889-1", "protein_name": "General transcription factor IIH subunit 3", "gene_name": "GTF2H3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92466-1", "protein_name": "DNA damage-binding protein 2", "gene_name": "DDB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62877-1", "protein_name": "E3 ubiquitin-protein ligase RBX1", "gene_name": "RBX1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15054-1", "protein_name": "DNA polymerase delta subunit 3", "gene_name": "POLD3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q03468-1", "protein_name": "DNA excision repair protein ERCC-6", "gene_name": "ERCC6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18074-1", "protein_name": "General transcription and DNA repair factor IIH helicase subunit XPD", "gene_name": "ERCC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49005-1", "protein_name": "DNA polymerase delta subunit 2", "gene_name": "POLD2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51948-1", "protein_name": "CDK-activating kinase assembly factor MAT1", "gene_name": "MNAT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51946-1", "protein_name": "Cyclin-H", "gene_name": "CCNH", "tax_name": "Human" }, { "uniprot_canonical_ac": "P15927-1", "protein_name": "Replication protein A 32 kDa subunit", "gene_name": "RPA2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63279-1", "protein_name": "SUMO-conjugating enzyme UBC9", "gene_name": "UBE2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "P54725-1", "protein_name": "Lysine-specific demethylase RAD23A", "gene_name": "RAD23A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40938-1", "protein_name": "Replication factor C subunit 3", "gene_name": "RFC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P09874-1", "protein_name": "Poly [ADP-ribose] polymerase 1", "gene_name": "PARP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P12004-1", "protein_name": "DNA sliding clamp PCNA", "gene_name": "PCNA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63165-1", "protein_name": "Small ubiquitin-related modifier 1", "gene_name": "SUMO1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75925-1", "protein_name": "E3 SUMO-protein ligase PIAS1", "gene_name": "PIAS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61956-1", "protein_name": "Small ubiquitin-related modifier 2", "gene_name": "SUMO2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61088-1", "protein_name": "Ubiquitin-conjugating enzyme E2 N", "gene_name": "UBE2N", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6ZNA4-1", "protein_name": "E3 ubiquitin-protein ligase Arkadia", "gene_name": "RNF111", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13619-1", "protein_name": "Cullin-4A", "gene_name": "CUL4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13620-2", "protein_name": "Cullin-4B", "gene_name": "CUL4B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P40937-1", "protein_name": "Replication factor C subunit 5", "gene_name": "RFC5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15819-1", "protein_name": "Ubiquitin-conjugating enzyme E2 variant 2", "gene_name": "UBE2V2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q70EL2-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 45", "gene_name": "USP45", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50613-1", "protein_name": "Cyclin-dependent kinase 7", "gene_name": "CDK7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG47-1", "protein_name": "Polyubiquitin-B", "gene_name": "UBB", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92889-1", "protein_name": "DNA repair endonuclease XPF", "gene_name": "ERCC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23025-1", "protein_name": "DNA repair protein complementing XP-A cells", "gene_name": "XPA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y6X2-1", "protein_name": "E3 SUMO-protein ligase PIAS3", "gene_name": "PIAS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG48-1", "protein_name": "Polyubiquitin-C", "gene_name": "UBC", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P30876", "url": "https://www.uniprot.org/uniprotkb/P30876" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.9716411", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 81 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Immunoaffinity purification and functional characterization of human transcription factor IIH and RNA polymerase II from clonal cell lines that conditionally express epitope-tagged subunits of the multiprotein complexes.", "journal": "The Journal of biological chemistry", "date": "1998-12-18", "authors": "Kershnar E, Wu S Y, Chiang C M", "reference": { "type": "PubMed", "id": "9852112", "url": "https://pubmed.ncbi.nlm.nih.gov/9852112" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P30876-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB2", "gene_name": "POLR2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61218-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC2", "gene_name": "POLR2F", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15514-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB4", "gene_name": "POLR2D", "tax_name": "Human" }, { "uniprot_canonical_ac": "P24928-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB1", "gene_name": "POLR2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13888-1", "protein_name": "General transcription factor IIH subunit 2", "gene_name": "GTF2H2C_2; GTF2H2C; GTF2H2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92759-1", "protein_name": "General transcription factor IIH subunit 4", "gene_name": "GTF2H4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19447-1", "protein_name": "General transcription and DNA repair factor IIH helicase/translocase subunit XPB", "gene_name": "ERCC3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52435-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB11-a", "gene_name": "POLR2J", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36954-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB9", "gene_name": "POLR2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19388-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52434-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC3", "gene_name": "POLR2H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62487-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB7", "gene_name": "POLR2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62875-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC5", "gene_name": "POLR2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19387-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32780-1", "protein_name": "General transcription factor IIH subunit 1", "gene_name": "GTF2H1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13889-1", "protein_name": "General transcription factor IIH subunit 3", "gene_name": "GTF2H3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18074-1", "protein_name": "General transcription and DNA repair factor IIH helicase subunit XPD", "gene_name": "ERCC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51948-1", "protein_name": "CDK-activating kinase assembly factor MAT1", "gene_name": "MNAT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51946-1", "protein_name": "Cyclin-H", "gene_name": "CCNH", "tax_name": "Human" }, { "uniprot_canonical_ac": "P50613-1", "protein_name": "Cyclin-dependent kinase 7", "gene_name": "CDK7", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "P30876", "url": "https://www.uniprot.org/uniprotkb/P30876" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.9852112", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 20 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Efficient PCNA complex formation is dependent upon both transcription coupled repair and genome overall repair.", "journal": "Mutation research", "date": "1998", "authors": "Balajee AS, May A, Dianova I, Bohr VA", "reference": { "type": "PubMed", "id": "9875289", "url": "https://pubmed.ncbi.nlm.nih.gov/9875289" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P30876-1", "protein_name": 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"Pre-mRNA-splicing factor ISY1 homolog", "gene_name": "ISY1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96NB3-1", "protein_name": "Zinc finger protein 830", "gene_name": "ZNF830", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HCS7-1", "protein_name": "Pre-mRNA-splicing factor SYF1", "gene_name": "XAB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13888-1", "protein_name": "General transcription factor IIH subunit 2", "gene_name": "GTF2H2C_2; GTF2H2C; GTF2H2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q92759-1", "protein_name": "General transcription factor IIH subunit 4", "gene_name": "GTF2H4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UMS4-1", "protein_name": "Pre-mRNA-processing factor 19", "gene_name": "PRPF19", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19447-1", "protein_name": "General transcription and DNA repair factor IIH helicase/translocase subunit XPB", "gene_name": "ERCC3", "tax_name": "Human" }, { "uniprot_canonical_ac": 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epsilon subunit 3", "gene_name": "POLE3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UBT6-1", "protein_name": "DNA polymerase kappa", "gene_name": "POLK", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35249-1", "protein_name": "Replication factor C subunit 4", "gene_name": "RFC4", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35244-1", "protein_name": "Replication protein A 14 kDa subunit", "gene_name": "RPA3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52435-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB11-a", "gene_name": "POLR2J", "tax_name": "Human" }, { "uniprot_canonical_ac": "P36954-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB9", "gene_name": "POLR2I", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19388-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC1", "gene_name": "POLR2E", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53803-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC4", "gene_name": "POLR2K", "tax_name": "Human" }, { "uniprot_canonical_ac": "P52434-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC3", "gene_name": "POLR2H", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62487-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB7", "gene_name": "POLR2G", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35251-1", "protein_name": "Replication factor C subunit 1", "gene_name": "RFC1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93009-1", "protein_name": "Ubiquitin C-terminal hydrolase 7", "gene_name": "USP7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P18858-1", "protein_name": "DNA ligase 1", "gene_name": "LIG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q16531-1", "protein_name": "DNA damage-binding protein 1", "gene_name": "DDB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62875-1", "protein_name": "DNA-directed RNA polymerases I, II, and III subunit RPABC5", "gene_name": "POLR2L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P19387-1", "protein_name": "DNA-directed RNA polymerase II subunit RPB3", "gene_name": "POLR2C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P27694-1", "protein_name": "Replication protein A 70 kDa DNA-binding subunit", "gene_name": "RPA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P32780-1", "protein_name": "General transcription factor IIH subunit 1", "gene_name": "GTF2H1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23193-1", "protein_name": "Transcription elongation factor A protein 1", "gene_name": "TCEA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2YD98-1", "protein_name": "UV-stimulated scaffold protein A", "gene_name": "UVSSA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P35250-1", "protein_name": "Replication factor C subunit 2", "gene_name": "RFC2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13889-1", "protein_name": "General transcription 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"uniprot_canonical_ac": "Q15631-1", "protein_name": "Translin", "gene_name": "TSN", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51572-1", "protein_name": "B-cell receptor-associated protein 31", "gene_name": "BCAP31", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5QNW6-1", "protein_name": "Histone H2B type 2-F", "gene_name": "H2BC18", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q06203-1", "protein_name": "Amidophosphoribosyltransferase", "gene_name": "PPAT", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q93008-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 9X", "gene_name": "USP9X", "tax_name": "Human" }, { "uniprot_canonical_ac": "P48643-1", "protein_name": "T-complex protein 1 subunit epsilon", "gene_name": "CCT5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q02880-1", "protein_name": "DNA topoisomerase 2-beta", "gene_name": "TOP2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14739-1", "protein_name": "Delta(14)-sterol reductase LBR", 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"count": 0 } ], "sort_fields": [] } ] }, { "title": "Exome sequencing identified RPS15A as a novel causative gene for Diamond-Blackfan anemia.", "journal": "Haematologica", "date": "2017", "authors": "Ikeda F, Yoshida K, Toki T, Uechi T, Ishida S, Nakajima Y, Sasahara Y, Okuno Y, Kanezaki R, Terui K, Kamio T, Kobayashi A, Fujita T, Sato-Otsubo A, Shiraishi Y, Tanaka H, Chiba K, Muramatsu H, Kanno H, Ohga S, Ohara A, Kojima S, Kenmochi N, Miyano S, Ogawa S, Ito E", "reference": { "type": "PubMed", "id": "27909223", "url": "https://pubmed.ncbi.nlm.nih.gov/27909223" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "P62244-1", "protein_name": "Small ribosomal subunit protein uS8", "gene_name": "RPS15A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6Q420-1", "protein_name": "Small ribosomal subunit protein uS8", "gene_name": "rps15a", "tax_name": "Zebrafish" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": 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"https://pubmed.ncbi.nlm.nih.gov/11076968" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q86SQ7-1", "protein_name": "Serologically defined colon cancer antigen 8", "gene_name": "SDCCAG8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TAP6-1", "protein_name": "Centrosomal protein of 76 kDa", "gene_name": "CEP76", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51955-1", "protein_name": "Serine/threonine-protein kinase Nek2", "gene_name": "NEK2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15154-1", "protein_name": "Pericentriolar material 1 protein", "gene_name": "PCM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5BJF6-1", "protein_name": "Outer dense fiber protein 2", "gene_name": "ODF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14008-1", "protein_name": "Cytoskeleton-associated protein 5", "gene_name": "CKAP5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68366-1", "protein_name": "Tubulin alpha-4A chain", "gene_name": "TUBA4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95684-1", "protein_name": "Centrosomal protein 43", "gene_name": "CEP43", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TEP8-3", "protein_name": "Centrosomal protein of 192 kDa", "gene_name": "CEP192", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71U36-1", "protein_name": "Tubulin alpha-1A chain", "gene_name": "TUBA1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BV73-1", "protein_name": "Centrosome-associated protein CEP250", "gene_name": "CEP250", "tax_name": "Human" }, { "uniprot_canonical_ac": "P43034-1", "protein_name": "Platelet-activating factor acetylhydrolase IB subunit beta", "gene_name": "PAFAH1B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NXR1-2", "protein_name": "Nuclear distribution protein nudE homolog 1", "gene_name": "NDE1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15078-1", "protein_name": "Centrosomal protein of 290 kDa", "gene_name": "CEP290", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53350-1", "protein_name": "Serine/threonine-protein kinase PLK1", "gene_name": "PLK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95613-1", "protein_name": "Pericentrin", "gene_name": "PCNT", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5JTW2-1", "protein_name": "Centrosomal protein of 78 kDa", "gene_name": "CEP78", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BYV8-1", "protein_name": "Centrosomal protein of 41 kDa", "gene_name": "CEP41", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96SN8-1", "protein_name": "CDK5 regulatory subunit-associated protein 2", "gene_name": "CDK5RAP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99871-1", "protein_name": "HAUS augmin-like complex subunit 7", "gene_name": "HAUS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06493-1", "protein_name": "Cyclin-dependent kinase 1", "gene_name": "CDK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2I6-1", "protein_name": "Ninein-like protein", "gene_name": "NINL", "tax_name": "Human" }, { "uniprot_canonical_ac": "A8K8P3-1", "protein_name": "Protein SFI1 homolog", "gene_name": "SFI1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPV0-1", "protein_name": "Centrosomal protein of 164 kDa", "gene_name": "CEP164", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43303-1", "protein_name": "Centriolar coiled-coil protein of 110 kDa", "gene_name": "CCP110", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94986-4", "protein_name": "Centrosomal protein of 152 kDa", "gene_name": "CEP152", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41208-1", "protein_name": "Centrin-2", "gene_name": "CETN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q66GS9-1", "protein_name": "Centrosomal protein of 135 kDa", "gene_name": "CEP135", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86XR8-1", "protein_name": "Centrosomal protein of 57 kDa", "gene_name": "CEP57", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPN4-1", "protein_name": "Centrosomal protein of 131 kDa", "gene_name": "CEP131", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z7A1-1", "protein_name": "Centriolin", "gene_name": "CNTRL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13409-1", "protein_name": "Cytoplasmic dynein 1 intermediate chain 2", "gene_name": "DYNC1I2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07437-1", "protein_name": "Tubulin beta chain", "gene_name": "TUBB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q68CZ6-1", "protein_name": "HAUS augmin-like complex subunit 3", "gene_name": "HAUS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04350-1", "protein_name": "Tubulin beta-4A chain", "gene_name": "TUBB4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00444-1", "protein_name": "Serine/threonine-protein kinase PLK4", "gene_name": "PLK4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HC77-1", "protein_name": "Centrosomal P4.1-associated protein", "gene_name": "CPAP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NHQ1-1", "protein_name": "Centrosomal protein of 70 kDa", "gene_name": "CEP70", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17612-1", "protein_name": "cAMP-dependent protein kinase catalytic subunit alpha", "gene_name": "PRKACA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61163-1", "protein_name": "Alpha-centractin", "gene_name": "ACTR1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63167-1", "protein_name": "Dynein light chain 1, cytoplasmic", "gene_name": "DYNLL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99996-2", "protein_name": "A-kinase anchor protein 9", "gene_name": "AKAP9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49674-1", "protein_name": "Casein kinase I isoform epsilon", "gene_name": "CSNK1E", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15691-1", "protein_name": "Microtubule-associated protein RP/EB family member 1", "gene_name": "MAPRE1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TCU4-1", "protein_name": "Centrosome-associated protein ALMS1", "gene_name": "ALMS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96MT8-1", "protein_name": "Centrosomal protein of 63 kDa", "gene_name": "CEP63", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07900-1", "protein_name": "Heat shock protein HSP 90-alpha", "gene_name": "HSP90AA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96CS2-1", "protein_name": "HAUS augmin-like complex subunit 1", "gene_name": "HAUS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31323-1", "protein_name": "cAMP-dependent protein kinase type II-beta regulatory subunit", "gene_name": "PRKAR2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13561-1", "protein_name": "Dynactin subunit 2", "gene_name": "DCTN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75665-1", "protein_name": "Centriole and centriolar satellite protein OFD1", "gene_name": "OFD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23258-1", "protein_name": "Tubulin gamma-1 chain", "gene_name": "TUBG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NVX0-1", "protein_name": "HAUS augmin-like complex subunit 2", "gene_name": "HAUS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z4H7-1", "protein_name": "HAUS augmin-like complex subunit 6", "gene_name": "HAUS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H6D7-1", "protein_name": "HAUS augmin-like complex subunit 4", "gene_name": "HAUS4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BT25-1", "protein_name": "HAUS augmin-like complex subunit 8", "gene_name": "HAUS8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68371-1", "protein_name": "Tubulin beta-4B chain", "gene_name": "TUBB4B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P209-1", "protein_name": "Centrosomal protein of 72 kDa", "gene_name": "CEP72", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75935-1", "protein_name": "Dynactin subunit 3", "gene_name": "DCTN3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z460-1", "protein_name": "CLIP-associating protein 1", "gene_name": "CLASP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P48730-1", "protein_name": "Casein kinase I isoform delta", "gene_name": "CSNK1D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14204-1", "protein_name": "Cytoplasmic dynein 1 heavy chain 1", "gene_name": "DYNC1H1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43805-1", "protein_name": "Microtubule nucleation factor SSNA1", "gene_name": "SSNA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94927-1", "protein_name": "HAUS augmin-like complex subunit 5", "gene_name": "HAUS5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NHV4-1", "protein_name": "Protein NEDD1", "gene_name": "NEDD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62258-1", "protein_name": "14-3-3 protein epsilon", "gene_name": "YWHAE", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61981-1", "protein_name": "14-3-3 protein gamma", "gene_name": "YWHAG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30153-1", "protein_name": "Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform", "gene_name": "PPP2R1A", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q86SQ7", "url": "https://www.uniprot.org/uniprotkb/Q86SQ7" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.11076968", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 68 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Direct binding of NuMA to tubulin is mediated by a novel sequence motif in the tail domain that bundles and stabilizes microtubules.", "journal": "Journal of cell science", "date": "2002", "authors": "Haren L, Merdes A", "reference": { "type": "PubMed", "id": "11956313", "url": "https://pubmed.ncbi.nlm.nih.gov/11956313" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q86SQ7-1", "protein_name": "Serologically defined colon cancer antigen 8", "gene_name": "SDCCAG8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TAP6-1", "protein_name": "Centrosomal protein of 76 kDa", "gene_name": "CEP76", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51955-1", "protein_name": "Serine/threonine-protein kinase Nek2", "gene_name": "NEK2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15154-1", "protein_name": "Pericentriolar material 1 protein", "gene_name": "PCM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68363-1", "protein_name": "Tubulin alpha-1B chain", "gene_name": "TUBA1B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5BJF6-1", "protein_name": "Outer dense fiber protein 2", "gene_name": "ODF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6PEY2-1", "protein_name": "Tubulin alpha-3E chain", "gene_name": "TUBA3E", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14008-1", "protein_name": "Cytoskeleton-associated protein 5", "gene_name": "CKAP5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68366-1", "protein_name": "Tubulin alpha-4A chain", "gene_name": "TUBA4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95684-1", "protein_name": "Centrosomal protein 43", "gene_name": "CEP43", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TEP8-3", "protein_name": "Centrosomal protein of 192 kDa", "gene_name": "CEP192", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71U36-1", "protein_name": "Tubulin alpha-1A chain", "gene_name": "TUBA1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BVA1-1", "protein_name": "Tubulin beta-2B chain", "gene_name": "TUBB2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BV73-1", "protein_name": "Centrosome-associated protein CEP250", "gene_name": "CEP250", "tax_name": "Human" }, { "uniprot_canonical_ac": "P43034-1", "protein_name": "Platelet-activating factor acetylhydrolase IB subunit beta", "gene_name": "PAFAH1B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NXR1-2", "protein_name": "Nuclear distribution protein nudE homolog 1", "gene_name": "NDE1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15078-1", "protein_name": "Centrosomal protein of 290 kDa", "gene_name": "CEP290", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53350-1", "protein_name": "Serine/threonine-protein kinase PLK1", "gene_name": "PLK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95613-1", "protein_name": "Pericentrin", "gene_name": "PCNT", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5JTW2-1", "protein_name": "Centrosomal protein of 78 kDa", "gene_name": "CEP78", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BYV8-1", "protein_name": "Centrosomal protein of 41 kDa", "gene_name": "CEP41", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96SN8-1", "protein_name": "CDK5 regulatory subunit-associated protein 2", "gene_name": "CDK5RAP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99871-1", "protein_name": "HAUS augmin-like complex subunit 7", "gene_name": "HAUS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06493-1", "protein_name": "Cyclin-dependent kinase 1", "gene_name": "CDK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2I6-1", "protein_name": "Ninein-like protein", "gene_name": "NINL", "tax_name": "Human" }, { "uniprot_canonical_ac": "A8K8P3-1", "protein_name": "Protein SFI1 homolog", "gene_name": "SFI1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPV0-1", "protein_name": "Centrosomal protein of 164 kDa", "gene_name": "CEP164", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43303-1", "protein_name": "Centriolar coiled-coil protein of 110 kDa", "gene_name": "CCP110", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94986-4", "protein_name": "Centrosomal protein of 152 kDa", "gene_name": "CEP152", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41208-1", "protein_name": "Centrin-2", "gene_name": "CETN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q66GS9-1", "protein_name": "Centrosomal protein of 135 kDa", "gene_name": "CEP135", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86XR8-1", "protein_name": "Centrosomal protein of 57 kDa", "gene_name": "CEP57", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPN4-1", "protein_name": "Centrosomal protein of 131 kDa", "gene_name": "CEP131", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z7A1-1", "protein_name": "Centriolin", "gene_name": "CNTRL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13409-1", "protein_name": "Cytoplasmic dynein 1 intermediate chain 2", "gene_name": "DYNC1I2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07437-1", "protein_name": "Tubulin beta chain", "gene_name": "TUBB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BUF5-1", "protein_name": "Tubulin beta-6 chain", "gene_name": "TUBB6", "tax_name": "Human" }, { "uniprot_canonical_ac": "A6NNZ2-1", "protein_name": "Tubulin beta 8B", "gene_name": "TUBB8B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q3ZCM7-1", "protein_name": "Tubulin beta-8 chain", "gene_name": "TUBB8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q68CZ6-1", "protein_name": "HAUS augmin-like complex subunit 3", "gene_name": "HAUS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96RT8-1", "protein_name": "Gamma-tubulin complex component 5", "gene_name": "TUBGCP5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BSJ2-1", "protein_name": "Gamma-tubulin complex component 2", "gene_name": "TUBGCP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04350-1", "protein_name": "Tubulin beta-4A chain", "gene_name": "TUBB4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13885-1", "protein_name": "Tubulin beta-2A chain", "gene_name": "TUBB2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00444-1", "protein_name": "Serine/threonine-protein kinase PLK4", "gene_name": "PLK4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HC77-1", "protein_name": "Centrosomal P4.1-associated protein", "gene_name": "CPAP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NHQ1-1", "protein_name": "Centrosomal protein of 70 kDa", "gene_name": "CEP70", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17612-1", "protein_name": "cAMP-dependent protein kinase catalytic subunit alpha", "gene_name": "PRKACA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61163-1", "protein_name": "Alpha-centractin", "gene_name": "ACTR1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63167-1", "protein_name": "Dynein light chain 1, cytoplasmic", "gene_name": "DYNLL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99996-2", "protein_name": "A-kinase anchor protein 9", "gene_name": "AKAP9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49674-1", "protein_name": "Casein kinase I isoform epsilon", "gene_name": "CSNK1E", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15691-1", "protein_name": "Microtubule-associated protein RP/EB family member 1", "gene_name": "MAPRE1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TCU4-1", "protein_name": "Centrosome-associated protein ALMS1", "gene_name": "ALMS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96MT8-1", "protein_name": "Centrosomal protein of 63 kDa", "gene_name": "CEP63", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07900-1", "protein_name": "Heat shock protein HSP 90-alpha", "gene_name": "HSP90AA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96CS2-1", "protein_name": "HAUS augmin-like complex subunit 1", "gene_name": "HAUS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31323-1", "protein_name": "cAMP-dependent protein kinase type II-beta regulatory subunit", "gene_name": "PRKAR2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96CW5-1", "protein_name": "Gamma-tubulin complex component 3", "gene_name": "TUBGCP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96RT7-1", "protein_name": "Gamma-tubulin complex component 6", "gene_name": "TUBGCP6", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0DPH8-1", "protein_name": "Tubulin alpha-3D chain", "gene_name": "TUBA3D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13561-1", "protein_name": "Dynactin subunit 2", "gene_name": "DCTN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75665-1", "protein_name": "Centriole and centriolar satellite protein OFD1", "gene_name": "OFD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23258-1", "protein_name": "Tubulin gamma-1 chain", "gene_name": "TUBG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NVX0-1", "protein_name": "HAUS augmin-like complex subunit 2", "gene_name": "HAUS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z4H7-1", "protein_name": "HAUS augmin-like complex subunit 6", "gene_name": "HAUS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H6D7-1", "protein_name": "HAUS augmin-like complex subunit 4", "gene_name": "HAUS4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BT25-1", "protein_name": "HAUS augmin-like complex subunit 8", "gene_name": "HAUS8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13509-1", "protein_name": "Tubulin beta-3 chain", "gene_name": "TUBB3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BQE3-1", "protein_name": "Tubulin alpha-1C chain", "gene_name": "TUBA1C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68371-1", "protein_name": "Tubulin beta-4B chain", "gene_name": "TUBB4B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H4B7-1", "protein_name": "Tubulin beta-1 chain", "gene_name": "TUBB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H853-1", "protein_name": "Tubulin-like protein alpha-4B", "gene_name": "TUBA4B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NRH3-1", "protein_name": "Tubulin gamma-2 chain", "gene_name": "TUBG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P209-1", "protein_name": "Centrosomal protein of 72 kDa", "gene_name": "CEP72", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14980-1", "protein_name": "Nuclear mitotic apparatus protein 1", "gene_name": "NUMA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75935-1", "protein_name": "Dynactin subunit 3", "gene_name": "DCTN3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z460-1", "protein_name": "CLIP-associating protein 1", "gene_name": "CLASP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P48730-1", "protein_name": "Casein kinase I isoform delta", "gene_name": "CSNK1D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14204-1", "protein_name": "Cytoplasmic dynein 1 heavy chain 1", "gene_name": "DYNC1H1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43805-1", "protein_name": "Microtubule nucleation factor SSNA1", "gene_name": "SSNA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UGJ1-1", "protein_name": "Gamma-tubulin complex component 4", "gene_name": "TUBGCP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94927-1", "protein_name": "HAUS augmin-like complex subunit 5", "gene_name": "HAUS5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NHV4-1", "protein_name": "Protein NEDD1", "gene_name": "NEDD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6NZ67-1", "protein_name": "Mitotic-spindle organizing protein 2B", "gene_name": "MZT2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08AG7-1", "protein_name": "Mitotic-spindle organizing protein 1", "gene_name": "MZT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P582-1", "protein_name": "Mitotic-spindle organizing protein 2A", "gene_name": "MZT2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "A6NHL2-1", "protein_name": "Tubulin alpha chain-like 3", "gene_name": "TUBAL3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NY65-1", "protein_name": "Tubulin alpha-8 chain", "gene_name": "TUBA8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0DPH7-1", "protein_name": "Tubulin alpha-3C chain", "gene_name": "TUBA3C", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62258-1", "protein_name": "14-3-3 protein epsilon", "gene_name": "YWHAE", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61981-1", "protein_name": "14-3-3 protein gamma", "gene_name": "YWHAG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30153-1", "protein_name": "Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform", "gene_name": "PPP2R1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5B8-1", "protein_name": "Nucleoside diphosphate kinase 7", "gene_name": "NME7", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q86SQ7", "url": "https://www.uniprot.org/uniprotkb/Q86SQ7" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.11956313", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 94 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Phosphorylation of threonine 210 and the role of serine 137 in the regulation of mammalian polo-like kinase.", "journal": "The Journal of biological chemistry", "date": "2002", "authors": "Jang YJ, Ma S, Terada Y, Erikson RL", "reference": { "type": "PubMed", "id": "12207013", "url": "https://pubmed.ncbi.nlm.nih.gov/12207013" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q86SQ7-1", "protein_name": "Serologically defined colon cancer antigen 8", "gene_name": "SDCCAG8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TAP6-1", "protein_name": "Centrosomal protein of 76 kDa", "gene_name": "CEP76", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51955-1", "protein_name": "Serine/threonine-protein kinase Nek2", "gene_name": "NEK2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14965-1", "protein_name": "Aurora kinase A", "gene_name": "AURKA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15154-1", "protein_name": "Pericentriolar material 1 protein", "gene_name": "PCM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13616-1", "protein_name": "Cullin-1", "gene_name": "CUL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5BJF6-1", "protein_name": "Outer dense fiber protein 2", "gene_name": "ODF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14008-1", "protein_name": "Cytoskeleton-associated protein 5", "gene_name": "CKAP5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68366-1", "protein_name": "Tubulin alpha-4A chain", "gene_name": "TUBA4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95684-1", "protein_name": "Centrosomal protein 43", "gene_name": "CEP43", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TEP8-3", "protein_name": "Centrosomal protein of 192 kDa", "gene_name": "CEP192", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71U36-1", "protein_name": "Tubulin alpha-1A chain", "gene_name": "TUBA1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BV73-1", "protein_name": "Centrosome-associated protein CEP250", "gene_name": "CEP250", "tax_name": "Human" }, { "uniprot_canonical_ac": "P43034-1", "protein_name": "Platelet-activating factor acetylhydrolase IB subunit beta", "gene_name": "PAFAH1B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NXR1-2", "protein_name": "Nuclear distribution protein nudE homolog 1", "gene_name": "NDE1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15078-1", "protein_name": "Centrosomal protein of 290 kDa", "gene_name": "CEP290", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53350-1", "protein_name": "Serine/threonine-protein kinase PLK1", "gene_name": "PLK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95613-1", "protein_name": "Pericentrin", "gene_name": "PCNT", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5JTW2-1", "protein_name": "Centrosomal protein of 78 kDa", "gene_name": "CEP78", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BYV8-1", "protein_name": "Centrosomal protein of 41 kDa", "gene_name": "CEP41", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96SN8-1", "protein_name": "CDK5 regulatory subunit-associated protein 2", "gene_name": "CDK5RAP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99871-1", "protein_name": "HAUS augmin-like complex subunit 7", "gene_name": "HAUS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06493-1", "protein_name": "Cyclin-dependent kinase 1", "gene_name": "CDK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2I6-1", "protein_name": "Ninein-like protein", "gene_name": "NINL", "tax_name": "Human" }, { "uniprot_canonical_ac": "A8K8P3-1", "protein_name": "Protein SFI1 homolog", "gene_name": "SFI1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPV0-1", "protein_name": "Centrosomal protein of 164 kDa", "gene_name": "CEP164", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43303-1", "protein_name": "Centriolar coiled-coil protein of 110 kDa", "gene_name": "CCP110", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94986-4", "protein_name": "Centrosomal protein of 152 kDa", "gene_name": "CEP152", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41208-1", "protein_name": "Centrin-2", "gene_name": "CETN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q66GS9-1", "protein_name": "Centrosomal protein of 135 kDa", "gene_name": "CEP135", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86XR8-1", "protein_name": "Centrosomal protein of 57 kDa", "gene_name": "CEP57", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPN4-1", "protein_name": "Centrosomal protein of 131 kDa", "gene_name": "CEP131", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z7A1-1", "protein_name": "Centriolin", "gene_name": "CNTRL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13409-1", "protein_name": "Cytoplasmic dynein 1 intermediate chain 2", "gene_name": "DYNC1I2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07437-1", "protein_name": "Tubulin beta chain", "gene_name": "TUBB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q68CZ6-1", "protein_name": "HAUS augmin-like complex subunit 3", "gene_name": "HAUS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04350-1", "protein_name": "Tubulin beta-4A chain", "gene_name": "TUBB4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61006-1", "protein_name": "Ras-related protein Rab-8A", "gene_name": "RAB8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96CV9-1", "protein_name": "Optineurin", "gene_name": "OPTN", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00444-1", "protein_name": "Serine/threonine-protein kinase PLK4", "gene_name": "PLK4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HC77-1", "protein_name": "Centrosomal P4.1-associated protein", "gene_name": "CPAP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NHQ1-1", "protein_name": "Centrosomal protein of 70 kDa", "gene_name": "CEP70", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17612-1", "protein_name": "cAMP-dependent protein kinase catalytic subunit alpha", "gene_name": "PRKACA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61163-1", "protein_name": "Alpha-centractin", "gene_name": "ACTR1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96IF1-1", "protein_name": "LIM domain-containing protein ajuba", "gene_name": "AJUBA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63167-1", "protein_name": "Dynein light chain 1, cytoplasmic", "gene_name": "DYNLL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99996-2", "protein_name": "A-kinase anchor protein 9", "gene_name": "AKAP9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49674-1", "protein_name": "Casein kinase I isoform epsilon", "gene_name": "CSNK1E", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15691-1", "protein_name": "Microtubule-associated protein RP/EB family member 1", "gene_name": "MAPRE1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62140-1", "protein_name": "Serine/threonine-protein phosphatase PP1-beta catalytic subunit", "gene_name": "PPP1CB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TCU4-1", "protein_name": "Centrosome-associated protein ALMS1", "gene_name": "ALMS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96MT8-1", "protein_name": "Centrosomal protein of 63 kDa", "gene_name": "CEP63", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07900-1", "protein_name": "Heat shock protein HSP 90-alpha", "gene_name": "HSP90AA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96CS2-1", "protein_name": "HAUS augmin-like complex subunit 1", 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0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Centrosomal proteins CG-NAP and kendrin provide microtubule nucleation sites by anchoring gamma-tubulin ring complex.", "journal": "Molecular biology of the cell", "date": "2002", "authors": "Takahashi M, Yamagiwa A, Nishimura T, Mukai H, Ono Y", "reference": { "type": "PubMed", "id": "12221128", "url": "https://pubmed.ncbi.nlm.nih.gov/12221128" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q86SQ7-1", "protein_name": "Serologically defined colon cancer antigen 8", "gene_name": "SDCCAG8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TAP6-1", "protein_name": "Centrosomal protein of 76 kDa", "gene_name": "CEP76", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51955-1", "protein_name": "Serine/threonine-protein kinase Nek2", "gene_name": "NEK2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15154-1", "protein_name": "Pericentriolar material 1 protein", "gene_name": "PCM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5BJF6-1", "protein_name": "Outer dense fiber protein 2", "gene_name": "ODF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14008-1", "protein_name": "Cytoskeleton-associated protein 5", "gene_name": "CKAP5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68366-1", "protein_name": "Tubulin alpha-4A chain", "gene_name": "TUBA4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95684-1", "protein_name": "Centrosomal protein 43", "gene_name": "CEP43", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TEP8-3", "protein_name": "Centrosomal protein of 192 kDa", "gene_name": "CEP192", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71U36-1", "protein_name": "Tubulin alpha-1A chain", "gene_name": "TUBA1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BV73-1", "protein_name": "Centrosome-associated protein CEP250", "gene_name": "CEP250", "tax_name": "Human" }, { "uniprot_canonical_ac": "P43034-1", "protein_name": "Platelet-activating factor acetylhydrolase IB subunit beta", "gene_name": "PAFAH1B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NXR1-2", "protein_name": "Nuclear distribution protein nudE homolog 1", "gene_name": "NDE1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15078-1", "protein_name": "Centrosomal protein of 290 kDa", "gene_name": "CEP290", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53350-1", "protein_name": "Serine/threonine-protein kinase PLK1", "gene_name": "PLK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95613-1", "protein_name": "Pericentrin", "gene_name": "PCNT", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5JTW2-1", "protein_name": "Centrosomal protein of 78 kDa", "gene_name": "CEP78", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BYV8-1", "protein_name": "Centrosomal protein of 41 kDa", "gene_name": "CEP41", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96SN8-1", "protein_name": "CDK5 regulatory subunit-associated protein 2", "gene_name": "CDK5RAP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99871-1", "protein_name": "HAUS augmin-like complex subunit 7", "gene_name": "HAUS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06493-1", "protein_name": "Cyclin-dependent kinase 1", "gene_name": "CDK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2I6-1", "protein_name": "Ninein-like protein", "gene_name": "NINL", "tax_name": "Human" }, { "uniprot_canonical_ac": "A8K8P3-1", "protein_name": "Protein SFI1 homolog", "gene_name": "SFI1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPV0-1", "protein_name": "Centrosomal protein of 164 kDa", "gene_name": "CEP164", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43303-1", "protein_name": "Centriolar coiled-coil protein of 110 kDa", "gene_name": "CCP110", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94986-4", "protein_name": "Centrosomal protein of 152 kDa", "gene_name": "CEP152", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41208-1", "protein_name": "Centrin-2", "gene_name": "CETN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q66GS9-1", "protein_name": "Centrosomal protein of 135 kDa", "gene_name": "CEP135", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86XR8-1", "protein_name": "Centrosomal protein of 57 kDa", "gene_name": "CEP57", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPN4-1", "protein_name": "Centrosomal protein of 131 kDa", "gene_name": "CEP131", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z7A1-1", "protein_name": "Centriolin", "gene_name": "CNTRL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13409-1", "protein_name": "Cytoplasmic dynein 1 intermediate chain 2", "gene_name": "DYNC1I2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07437-1", "protein_name": "Tubulin beta chain", "gene_name": "TUBB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q68CZ6-1", "protein_name": "HAUS augmin-like complex subunit 3", "gene_name": "HAUS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96RT8-1", "protein_name": "Gamma-tubulin complex component 5", "gene_name": "TUBGCP5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BSJ2-1", "protein_name": "Gamma-tubulin complex component 2", "gene_name": "TUBGCP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04350-1", "protein_name": "Tubulin beta-4A chain", "gene_name": "TUBB4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00444-1", "protein_name": "Serine/threonine-protein kinase PLK4", "gene_name": "PLK4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HC77-1", "protein_name": "Centrosomal P4.1-associated protein", "gene_name": "CPAP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NHQ1-1", "protein_name": "Centrosomal protein of 70 kDa", "gene_name": "CEP70", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17612-1", "protein_name": "cAMP-dependent protein kinase catalytic subunit alpha", "gene_name": "PRKACA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61163-1", "protein_name": "Alpha-centractin", "gene_name": "ACTR1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63167-1", "protein_name": "Dynein light chain 1, cytoplasmic", "gene_name": "DYNLL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99996-2", "protein_name": "A-kinase anchor protein 9", "gene_name": "AKAP9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49674-1", "protein_name": "Casein kinase I isoform epsilon", "gene_name": "CSNK1E", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15691-1", "protein_name": "Microtubule-associated protein RP/EB family member 1", "gene_name": "MAPRE1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TCU4-1", "protein_name": "Centrosome-associated protein ALMS1", "gene_name": "ALMS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96MT8-1", "protein_name": "Centrosomal protein of 63 kDa", "gene_name": "CEP63", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07900-1", "protein_name": "Heat shock protein HSP 90-alpha", "gene_name": "HSP90AA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96CS2-1", "protein_name": "HAUS augmin-like complex subunit 1", "gene_name": "HAUS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31323-1", "protein_name": "cAMP-dependent protein kinase type II-beta regulatory subunit", "gene_name": "PRKAR2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96CW5-1", "protein_name": "Gamma-tubulin complex component 3", "gene_name": "TUBGCP3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96RT7-1", "protein_name": "Gamma-tubulin complex component 6", "gene_name": "TUBGCP6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13561-1", "protein_name": "Dynactin subunit 2", "gene_name": "DCTN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75665-1", "protein_name": "Centriole and centriolar satellite protein OFD1", "gene_name": "OFD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23258-1", "protein_name": "Tubulin gamma-1 chain", "gene_name": "TUBG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NVX0-1", "protein_name": "HAUS augmin-like complex subunit 2", "gene_name": "HAUS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z4H7-1", "protein_name": "HAUS augmin-like complex subunit 6", "gene_name": "HAUS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H6D7-1", "protein_name": "HAUS augmin-like complex subunit 4", "gene_name": "HAUS4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BT25-1", "protein_name": "HAUS augmin-like complex subunit 8", "gene_name": "HAUS8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68371-1", "protein_name": "Tubulin beta-4B chain", "gene_name": "TUBB4B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NRH3-1", "protein_name": "Tubulin gamma-2 chain", "gene_name": "TUBG2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P209-1", "protein_name": "Centrosomal protein of 72 kDa", "gene_name": "CEP72", "tax_name": "Human" }, { "uniprot_canonical_ac": "P21127-1", "protein_name": "Cyclin-dependent kinase 11B", "gene_name": "CDK11B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQ88-1", "protein_name": "Cyclin-dependent kinase 11A", "gene_name": "CDK11A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75935-1", "protein_name": "Dynactin subunit 3", "gene_name": "DCTN3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z460-1", "protein_name": "CLIP-associating protein 1", "gene_name": "CLASP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P48730-1", "protein_name": "Casein kinase I isoform delta", "gene_name": "CSNK1D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14204-1", "protein_name": "Cytoplasmic dynein 1 heavy chain 1", "gene_name": "DYNC1H1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43805-1", "protein_name": "Microtubule nucleation factor SSNA1", "gene_name": "SSNA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UGJ1-1", "protein_name": "Gamma-tubulin complex component 4", "gene_name": "TUBGCP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94927-1", "protein_name": "HAUS augmin-like complex subunit 5", "gene_name": "HAUS5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NHV4-1", "protein_name": "Protein NEDD1", "gene_name": "NEDD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6NZ67-1", "protein_name": "Mitotic-spindle organizing protein 2B", "gene_name": "MZT2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q08AG7-1", "protein_name": "Mitotic-spindle organizing protein 1", "gene_name": "MZT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6P582-1", "protein_name": "Mitotic-spindle organizing protein 2A", "gene_name": "MZT2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62258-1", "protein_name": "14-3-3 protein epsilon", "gene_name": "YWHAE", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61981-1", "protein_name": "14-3-3 protein gamma", "gene_name": "YWHAG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30153-1", "protein_name": "Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform", "gene_name": "PPP2R1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5B8-1", "protein_name": "Nucleoside diphosphate kinase 7", "gene_name": "NME7", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q86SQ7", "url": "https://www.uniprot.org/uniprotkb/Q86SQ7" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.12221128", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 80 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Nuclear translocation of plk1 mediated by its bipartite nuclear localization signal.", "journal": "The Journal of biological chemistry", "date": "2002", "authors": "Taniguchi E, Toyoshima-Morimoto F, Nishida E", "reference": { "type": "PubMed", "id": "12364337", "url": "https://pubmed.ncbi.nlm.nih.gov/12364337" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q86SQ7-1", "protein_name": "Serologically defined colon cancer antigen 8", "gene_name": "SDCCAG8", "tax_name": "Human" }, { 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"tax_name": "Human" }, { "uniprot_canonical_ac": "O95684-1", "protein_name": "Centrosomal protein 43", "gene_name": "CEP43", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TEP8-3", "protein_name": "Centrosomal protein of 192 kDa", "gene_name": "CEP192", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71U36-1", "protein_name": "Tubulin alpha-1A chain", "gene_name": "TUBA1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BV73-1", "protein_name": "Centrosome-associated protein CEP250", "gene_name": "CEP250", "tax_name": "Human" }, { "uniprot_canonical_ac": "P43034-1", "protein_name": "Platelet-activating factor acetylhydrolase IB subunit beta", "gene_name": "PAFAH1B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NXR1-2", "protein_name": "Nuclear distribution protein nudE homolog 1", "gene_name": "NDE1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15078-1", "protein_name": "Centrosomal protein of 290 kDa", "gene_name": "CEP290", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53350-1", "protein_name": "Serine/threonine-protein kinase PLK1", "gene_name": "PLK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95613-1", "protein_name": "Pericentrin", "gene_name": "PCNT", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5JTW2-1", "protein_name": "Centrosomal protein of 78 kDa", "gene_name": "CEP78", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BYV8-1", "protein_name": "Centrosomal protein of 41 kDa", "gene_name": "CEP41", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96SN8-1", "protein_name": "CDK5 regulatory subunit-associated protein 2", "gene_name": "CDK5RAP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99871-1", "protein_name": "HAUS augmin-like complex subunit 7", "gene_name": "HAUS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06493-1", "protein_name": "Cyclin-dependent kinase 1", "gene_name": "CDK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2I6-1", "protein_name": "Ninein-like protein", "gene_name": "NINL", "tax_name": "Human" }, { "uniprot_canonical_ac": "A8K8P3-1", "protein_name": "Protein SFI1 homolog", "gene_name": "SFI1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPV0-1", "protein_name": "Centrosomal protein of 164 kDa", "gene_name": "CEP164", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43303-1", "protein_name": "Centriolar coiled-coil protein of 110 kDa", "gene_name": "CCP110", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94986-4", "protein_name": "Centrosomal protein of 152 kDa", "gene_name": "CEP152", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41208-1", "protein_name": "Centrin-2", "gene_name": "CETN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q66GS9-1", "protein_name": "Centrosomal protein of 135 kDa", "gene_name": "CEP135", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86XR8-1", "protein_name": "Centrosomal protein of 57 kDa", "gene_name": "CEP57", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPN4-1", "protein_name": "Centrosomal protein of 131 kDa", "gene_name": "CEP131", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z7A1-1", "protein_name": "Centriolin", "gene_name": "CNTRL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13409-1", "protein_name": "Cytoplasmic dynein 1 intermediate chain 2", "gene_name": "DYNC1I2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07437-1", "protein_name": "Tubulin beta chain", "gene_name": "TUBB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q68CZ6-1", "protein_name": "HAUS augmin-like complex subunit 3", "gene_name": "HAUS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04350-1", "protein_name": "Tubulin beta-4A chain", "gene_name": "TUBB4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61006-1", "protein_name": "Ras-related protein Rab-8A", "gene_name": "RAB8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96CV9-1", "protein_name": "Optineurin", "gene_name": "OPTN", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00444-1", "protein_name": "Serine/threonine-protein kinase PLK4", "gene_name": "PLK4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HC77-1", "protein_name": "Centrosomal P4.1-associated protein", "gene_name": "CPAP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NHQ1-1", "protein_name": "Centrosomal protein of 70 kDa", "gene_name": "CEP70", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17612-1", "protein_name": "cAMP-dependent protein kinase catalytic subunit alpha", "gene_name": "PRKACA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61163-1", "protein_name": "Alpha-centractin", "gene_name": "ACTR1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96IF1-1", "protein_name": "LIM domain-containing protein ajuba", "gene_name": "AJUBA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63167-1", "protein_name": "Dynein light chain 1, cytoplasmic", "gene_name": "DYNLL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99996-2", "protein_name": "A-kinase anchor protein 9", "gene_name": "AKAP9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49674-1", "protein_name": "Casein kinase I isoform epsilon", "gene_name": "CSNK1E", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15691-1", "protein_name": "Microtubule-associated protein RP/EB family member 1", "gene_name": "MAPRE1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62140-1", "protein_name": "Serine/threonine-protein phosphatase PP1-beta catalytic subunit", "gene_name": "PPP1CB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TCU4-1", "protein_name": "Centrosome-associated protein ALMS1", "gene_name": "ALMS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96MT8-1", "protein_name": "Centrosomal protein of 63 kDa", "gene_name": "CEP63", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07900-1", "protein_name": "Heat shock protein HSP 90-alpha", "gene_name": "HSP90AA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96CS2-1", "protein_name": "HAUS augmin-like complex subunit 1", "gene_name": "HAUS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y297-1", "protein_name": "F-box/WD repeat-containing protein 1A", "gene_name": "BTRC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKB1-1", "protein_name": "F-box/WD repeat-containing protein 11", "gene_name": "FBXW11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31323-1", "protein_name": "cAMP-dependent protein kinase type II-beta regulatory subunit", "gene_name": "PRKAR2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13561-1", "protein_name": "Dynactin subunit 2", "gene_name": "DCTN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75665-1", "protein_name": "Centriole and centriolar satellite protein OFD1", "gene_name": "OFD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23258-1", "protein_name": "Tubulin gamma-1 chain", "gene_name": "TUBG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NVX0-1", "protein_name": "HAUS augmin-like complex subunit 2", "gene_name": "HAUS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z4H7-1", "protein_name": "HAUS augmin-like complex subunit 6", "gene_name": "HAUS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H6D7-1", "protein_name": "HAUS augmin-like complex subunit 4", "gene_name": "HAUS4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BT25-1", "protein_name": "HAUS augmin-like complex subunit 8", "gene_name": "HAUS8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68371-1", "protein_name": "Tubulin beta-4B chain", "gene_name": "TUBB4B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P209-1", "protein_name": "Centrosomal protein of 72 kDa", "gene_name": "CEP72", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95067-1", "protein_name": "G2/mitotic-specific cyclin-B2", "gene_name": "CCNB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14635-1", "protein_name": "G2/mitotic-specific cyclin-B1", "gene_name": "CCNB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6PGQ7-1", "protein_name": "Protein aurora borealis", "gene_name": "BORA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG47-1", "protein_name": "Polyubiquitin-B", "gene_name": "UBB", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75935-1", "protein_name": "Dynactin subunit 3", "gene_name": "DCTN3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14974-1", "protein_name": "Protein phosphatase 1 regulatory subunit 12A", "gene_name": "PPP1R12A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z460-1", "protein_name": "CLIP-associating protein 1", "gene_name": "CLASP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P48730-1", "protein_name": "Casein kinase I isoform delta", "gene_name": "CSNK1D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14204-1", "protein_name": "Cytoplasmic dynein 1 heavy chain 1", "gene_name": "DYNC1H1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43805-1", "protein_name": "Microtubule nucleation factor SSNA1", "gene_name": "SSNA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94927-1", "protein_name": "HAUS augmin-like complex subunit 5", "gene_name": "HAUS5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NHV4-1", "protein_name": "Protein NEDD1", "gene_name": "NEDD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62258-1", "protein_name": "14-3-3 protein epsilon", "gene_name": "YWHAE", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61981-1", "protein_name": "14-3-3 protein gamma", "gene_name": "YWHAG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG48-1", "protein_name": "Polyubiquitin-C", "gene_name": "UBC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63208-1", "protein_name": "S-phase kinase-associated protein 1", "gene_name": "SKP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30153-1", "protein_name": "Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform", "gene_name": "PPP2R1A", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q86SQ7", "url": "https://www.uniprot.org/uniprotkb/Q86SQ7" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.12364337", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 85 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", 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"total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Identification and characterization of the novel centrosome-associated protein CCCAP.", "journal": "Gene", "date": "2003", "authors": "Kenedy Andrew A, Cohen Kenneth J, Loveys Deborah A, Kato Gregory J, Dang Chi V", "reference": { "type": "PubMed", "id": "12559564", "url": "https://pubmed.ncbi.nlm.nih.gov/12559564" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q86SQ7-1", "protein_name": "Serologically defined colon cancer antigen 8", "gene_name": "SDCCAG8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q80UF4-1", "protein_name": "Serologically defined colon cancer antigen 8 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"count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Polo-like kinase 1 regulates Nlp, a centrosome protein involved in microtubule nucleation.", "journal": "Developmental cell", "date": "2003", "authors": "Casenghi M, Meraldi P, Weinhart U, Duncan PI, Korner R, Nigg EA", "reference": { "type": "PubMed", "id": "12852856", "url": "https://pubmed.ncbi.nlm.nih.gov/12852856" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q86SQ7-1", "protein_name": "Serologically defined colon cancer antigen 8", "gene_name": "SDCCAG8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TAP6-1", "protein_name": "Centrosomal protein of 76 kDa", "gene_name": "CEP76", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51955-1", "protein_name": "Serine/threonine-protein kinase Nek2", "gene_name": "NEK2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15154-1", "protein_name": "Pericentriolar material 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regulatory subunit-associated protein 2", "gene_name": "CDK5RAP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99871-1", "protein_name": "HAUS augmin-like complex subunit 7", "gene_name": "HAUS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06493-1", "protein_name": "Cyclin-dependent kinase 1", "gene_name": "CDK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2I6-1", "protein_name": "Ninein-like protein", "gene_name": "NINL", "tax_name": "Human" }, { "uniprot_canonical_ac": "A8K8P3-1", "protein_name": "Protein SFI1 homolog", "gene_name": "SFI1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPV0-1", "protein_name": "Centrosomal protein of 164 kDa", "gene_name": "CEP164", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43303-1", "protein_name": "Centriolar coiled-coil protein of 110 kDa", "gene_name": "CCP110", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94986-4", "protein_name": "Centrosomal protein of 152 kDa", "gene_name": "CEP152", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41208-1", "protein_name": "Centrin-2", "gene_name": "CETN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q66GS9-1", "protein_name": "Centrosomal protein of 135 kDa", "gene_name": "CEP135", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86XR8-1", "protein_name": "Centrosomal protein of 57 kDa", "gene_name": "CEP57", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPN4-1", "protein_name": "Centrosomal protein of 131 kDa", "gene_name": "CEP131", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z7A1-1", "protein_name": "Centriolin", "gene_name": "CNTRL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13409-1", "protein_name": "Cytoplasmic dynein 1 intermediate chain 2", "gene_name": "DYNC1I2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07437-1", "protein_name": "Tubulin beta chain", "gene_name": "TUBB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q68CZ6-1", "protein_name": "HAUS augmin-like complex subunit 3", "gene_name": "HAUS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04350-1", "protein_name": "Tubulin beta-4A chain", "gene_name": "TUBB4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00444-1", "protein_name": "Serine/threonine-protein kinase PLK4", "gene_name": "PLK4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HC77-1", "protein_name": "Centrosomal P4.1-associated protein", "gene_name": "CPAP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NHQ1-1", "protein_name": "Centrosomal protein of 70 kDa", "gene_name": "CEP70", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17612-1", "protein_name": "cAMP-dependent protein kinase catalytic subunit alpha", "gene_name": "PRKACA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61163-1", "protein_name": "Alpha-centractin", "gene_name": "ACTR1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63167-1", "protein_name": "Dynein light chain 1, cytoplasmic", "gene_name": "DYNLL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99996-2", "protein_name": "A-kinase anchor protein 9", "gene_name": "AKAP9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49674-1", "protein_name": "Casein kinase I isoform epsilon", "gene_name": "CSNK1E", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15691-1", "protein_name": "Microtubule-associated protein RP/EB family member 1", "gene_name": "MAPRE1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TCU4-1", "protein_name": "Centrosome-associated protein ALMS1", "gene_name": "ALMS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96MT8-1", "protein_name": "Centrosomal protein of 63 kDa", "gene_name": "CEP63", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07900-1", "protein_name": "Heat shock protein HSP 90-alpha", "gene_name": "HSP90AA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96CS2-1", "protein_name": "HAUS augmin-like complex subunit 1", "gene_name": "HAUS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31323-1", "protein_name": "cAMP-dependent protein kinase type II-beta regulatory subunit", "gene_name": "PRKAR2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13561-1", "protein_name": "Dynactin subunit 2", "gene_name": "DCTN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75665-1", "protein_name": "Centriole and centriolar satellite protein OFD1", "gene_name": "OFD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23258-1", "protein_name": "Tubulin gamma-1 chain", "gene_name": "TUBG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NVX0-1", "protein_name": "HAUS augmin-like complex subunit 2", "gene_name": "HAUS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z4H7-1", "protein_name": "HAUS augmin-like complex subunit 6", "gene_name": "HAUS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H6D7-1", "protein_name": "HAUS augmin-like complex subunit 4", "gene_name": "HAUS4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BT25-1", "protein_name": "HAUS augmin-like complex subunit 8", "gene_name": "HAUS8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68371-1", "protein_name": "Tubulin beta-4B chain", "gene_name": "TUBB4B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P209-1", "protein_name": "Centrosomal protein of 72 kDa", "gene_name": "CEP72", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75935-1", "protein_name": "Dynactin subunit 3", "gene_name": "DCTN3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z460-1", "protein_name": "CLIP-associating protein 1", "gene_name": "CLASP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P48730-1", "protein_name": "Casein kinase I isoform delta", "gene_name": "CSNK1D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14204-1", "protein_name": "Cytoplasmic dynein 1 heavy chain 1", "gene_name": "DYNC1H1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43805-1", "protein_name": "Microtubule nucleation factor SSNA1", "gene_name": "SSNA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UGJ1-1", "protein_name": "Gamma-tubulin complex component 4", "gene_name": "TUBGCP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94927-1", "protein_name": "HAUS augmin-like complex subunit 5", "gene_name": "HAUS5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NHV4-1", "protein_name": "Protein NEDD1", "gene_name": "NEDD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62258-1", "protein_name": "14-3-3 protein epsilon", "gene_name": "YWHAE", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61981-1", "protein_name": "14-3-3 protein gamma", "gene_name": "YWHAG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30153-1", "protein_name": "Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform", "gene_name": "PPP2R1A", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q86SQ7", "url": "https://www.uniprot.org/uniprotkb/Q86SQ7" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "phosphorylation": [ { "start_pos": 161, "end_pos": 161, "kinase_uniprot_canonical_ac": "P53350-1", "kinase_gene_name": "PLK1", "residue": "Thr", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9Y2I6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9Y2I6" }, { "database": "PubMed", "id": "12852856", "url": "https://pubmed.ncbi.nlm.nih.gov/12852856" } ], "site_lbl": "Thr161", "uniprot_canonical_ac": "Q9Y2I6-1" }, { "start_pos": 686, "end_pos": 686, "kinase_uniprot_canonical_ac": "P53350-1", "kinase_gene_name": "PLK1", "residue": "Ser", "comment": "", "evidence": [ { "database": "iPTMnet", "id": "Q9Y2I6", "url": "http://research.bioinformatics.udel.edu/iptmnet/entry/Q9Y2I6" }, { "database": "PubMed", "id": "12852856", "url": "https://pubmed.ncbi.nlm.nih.gov/12852856" } ], "site_lbl": "Ser686", "uniprot_canonical_ac": "Q9Y2I6-1" } ], "record_id": "pubmed.12852856", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 69 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl", "uniprot_canonical_ac" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Aurora-A and an interacting activator, the LIM protein Ajuba, are required for mitotic commitment in human cells.", "journal": "Cell", "date": "2003", "authors": "Hirota T, Kunitoku N, Sasayama T, Marumoto T, Zhang D, Nitta M, Hatakeyama K, Saya H", "reference": { "type": "PubMed", "id": "13678582", "url": "https://pubmed.ncbi.nlm.nih.gov/13678582" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q86SQ7-1", "protein_name": "Serologically defined colon cancer antigen 8", "gene_name": "SDCCAG8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TAP6-1", "protein_name": "Centrosomal protein of 76 kDa", "gene_name": "CEP76", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51955-1", "protein_name": "Serine/threonine-protein kinase Nek2", "gene_name": "NEK2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14965-1", "protein_name": "Aurora kinase A", "gene_name": "AURKA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15154-1", "protein_name": "Pericentriolar material 1 protein", "gene_name": "PCM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13616-1", "protein_name": "Cullin-1", "gene_name": "CUL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5BJF6-1", "protein_name": "Outer dense fiber protein 2", "gene_name": "ODF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14008-1", "protein_name": "Cytoskeleton-associated protein 5", "gene_name": "CKAP5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68366-1", "protein_name": "Tubulin alpha-4A chain", "gene_name": "TUBA4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95684-1", "protein_name": "Centrosomal protein 43", "gene_name": "CEP43", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TEP8-3", "protein_name": "Centrosomal protein of 192 kDa", "gene_name": "CEP192", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71U36-1", "protein_name": "Tubulin alpha-1A chain", "gene_name": "TUBA1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BV73-1", "protein_name": "Centrosome-associated protein CEP250", "gene_name": "CEP250", "tax_name": "Human" }, { "uniprot_canonical_ac": "P43034-1", "protein_name": "Platelet-activating factor acetylhydrolase IB subunit beta", "gene_name": "PAFAH1B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NXR1-2", "protein_name": "Nuclear distribution protein nudE homolog 1", "gene_name": "NDE1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15078-1", "protein_name": "Centrosomal protein of 290 kDa", "gene_name": "CEP290", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53350-1", "protein_name": "Serine/threonine-protein kinase PLK1", "gene_name": "PLK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95613-1", "protein_name": "Pericentrin", "gene_name": "PCNT", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5JTW2-1", "protein_name": "Centrosomal protein of 78 kDa", "gene_name": "CEP78", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BYV8-1", "protein_name": "Centrosomal protein of 41 kDa", "gene_name": "CEP41", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96SN8-1", "protein_name": "CDK5 regulatory subunit-associated protein 2", "gene_name": "CDK5RAP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99871-1", "protein_name": "HAUS augmin-like complex subunit 7", "gene_name": "HAUS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06493-1", "protein_name": "Cyclin-dependent kinase 1", "gene_name": "CDK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2I6-1", "protein_name": "Ninein-like protein", "gene_name": "NINL", "tax_name": "Human" }, { "uniprot_canonical_ac": "A8K8P3-1", "protein_name": "Protein SFI1 homolog", "gene_name": "SFI1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPV0-1", "protein_name": "Centrosomal protein of 164 kDa", "gene_name": "CEP164", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43303-1", "protein_name": "Centriolar coiled-coil protein of 110 kDa", "gene_name": "CCP110", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94986-4", "protein_name": "Centrosomal protein of 152 kDa", "gene_name": "CEP152", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41208-1", "protein_name": "Centrin-2", "gene_name": "CETN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q66GS9-1", "protein_name": "Centrosomal protein of 135 kDa", "gene_name": "CEP135", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86XR8-1", "protein_name": "Centrosomal protein of 57 kDa", "gene_name": "CEP57", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPN4-1", "protein_name": "Centrosomal protein of 131 kDa", "gene_name": "CEP131", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z7A1-1", "protein_name": "Centriolin", "gene_name": "CNTRL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13409-1", "protein_name": "Cytoplasmic dynein 1 intermediate chain 2", "gene_name": "DYNC1I2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07437-1", "protein_name": "Tubulin beta chain", "gene_name": "TUBB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q68CZ6-1", "protein_name": "HAUS augmin-like complex subunit 3", "gene_name": "HAUS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04350-1", "protein_name": "Tubulin beta-4A chain", "gene_name": "TUBB4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61006-1", "protein_name": "Ras-related protein Rab-8A", "gene_name": "RAB8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96CV9-1", "protein_name": "Optineurin", "gene_name": "OPTN", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00444-1", "protein_name": "Serine/threonine-protein kinase PLK4", "gene_name": "PLK4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HC77-1", "protein_name": "Centrosomal P4.1-associated protein", "gene_name": "CPAP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NHQ1-1", "protein_name": "Centrosomal protein of 70 kDa", "gene_name": "CEP70", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17612-1", "protein_name": "cAMP-dependent protein kinase catalytic subunit alpha", "gene_name": "PRKACA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61163-1", "protein_name": "Alpha-centractin", "gene_name": "ACTR1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96IF1-1", "protein_name": "LIM domain-containing protein ajuba", "gene_name": "AJUBA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63167-1", "protein_name": "Dynein light chain 1, cytoplasmic", "gene_name": "DYNLL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99996-2", "protein_name": "A-kinase anchor protein 9", "gene_name": "AKAP9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49674-1", "protein_name": "Casein kinase I isoform epsilon", "gene_name": "CSNK1E", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15691-1", "protein_name": "Microtubule-associated protein RP/EB family member 1", "gene_name": "MAPRE1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62140-1", "protein_name": "Serine/threonine-protein phosphatase PP1-beta catalytic subunit", "gene_name": "PPP1CB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TCU4-1", "protein_name": "Centrosome-associated protein ALMS1", "gene_name": "ALMS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96MT8-1", "protein_name": "Centrosomal protein of 63 kDa", "gene_name": "CEP63", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07900-1", "protein_name": "Heat shock protein HSP 90-alpha", "gene_name": "HSP90AA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96CS2-1", "protein_name": "HAUS augmin-like complex subunit 1", "gene_name": "HAUS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y297-1", "protein_name": "F-box/WD repeat-containing protein 1A", "gene_name": "BTRC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKB1-1", "protein_name": "F-box/WD repeat-containing protein 11", "gene_name": "FBXW11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31323-1", "protein_name": "cAMP-dependent protein kinase type II-beta regulatory subunit", "gene_name": "PRKAR2B", "tax_name": "Human" }, { 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"protein_name": "Centrosomal protein 43", "gene_name": "CEP43", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TEP8-3", "protein_name": "Centrosomal protein of 192 kDa", "gene_name": "CEP192", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71U36-1", "protein_name": "Tubulin alpha-1A chain", "gene_name": "TUBA1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BV73-1", "protein_name": "Centrosome-associated protein CEP250", "gene_name": "CEP250", "tax_name": "Human" }, { "uniprot_canonical_ac": "P43034-1", "protein_name": "Platelet-activating factor acetylhydrolase IB subunit beta", "gene_name": "PAFAH1B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NXR1-2", "protein_name": "Nuclear distribution protein nudE homolog 1", "gene_name": "NDE1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15078-1", "protein_name": "Centrosomal protein of 290 kDa", "gene_name": "CEP290", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53350-1", "protein_name": "Serine/threonine-protein kinase PLK1", "gene_name": "PLK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9ULW0-1", "protein_name": "Targeting protein for Xklp2", "gene_name": "TPX2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95613-1", "protein_name": "Pericentrin", "gene_name": "PCNT", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5JTW2-1", "protein_name": "Centrosomal protein of 78 kDa", "gene_name": "CEP78", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BYV8-1", "protein_name": "Centrosomal protein of 41 kDa", "gene_name": "CEP41", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96SN8-1", "protein_name": "CDK5 regulatory subunit-associated protein 2", "gene_name": "CDK5RAP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99871-1", "protein_name": "HAUS augmin-like complex subunit 7", "gene_name": "HAUS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06493-1", "protein_name": "Cyclin-dependent kinase 1", "gene_name": "CDK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2I6-1", "protein_name": "Ninein-like protein", "gene_name": "NINL", "tax_name": "Human" }, { "uniprot_canonical_ac": "A8K8P3-1", "protein_name": "Protein SFI1 homolog", "gene_name": "SFI1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPV0-1", "protein_name": "Centrosomal protein of 164 kDa", "gene_name": "CEP164", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43303-1", "protein_name": "Centriolar coiled-coil protein of 110 kDa", "gene_name": "CCP110", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94986-4", "protein_name": "Centrosomal protein of 152 kDa", "gene_name": "CEP152", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41208-1", "protein_name": "Centrin-2", "gene_name": "CETN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q66GS9-1", "protein_name": "Centrosomal protein of 135 kDa", "gene_name": "CEP135", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86XR8-1", "protein_name": "Centrosomal protein of 57 kDa", "gene_name": "CEP57", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPN4-1", "protein_name": "Centrosomal protein of 131 kDa", "gene_name": "CEP131", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z7A1-1", "protein_name": "Centriolin", "gene_name": "CNTRL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13409-1", "protein_name": "Cytoplasmic dynein 1 intermediate chain 2", "gene_name": "DYNC1I2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07437-1", "protein_name": "Tubulin beta chain", "gene_name": "TUBB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q68CZ6-1", "protein_name": "HAUS augmin-like complex subunit 3", "gene_name": "HAUS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04350-1", "protein_name": "Tubulin beta-4A chain", "gene_name": "TUBB4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00444-1", "protein_name": "Serine/threonine-protein kinase PLK4", "gene_name": "PLK4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HC77-1", "protein_name": "Centrosomal P4.1-associated protein", "gene_name": "CPAP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NHQ1-1", "protein_name": "Centrosomal protein of 70 kDa", "gene_name": "CEP70", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17612-1", "protein_name": "cAMP-dependent protein kinase catalytic subunit alpha", "gene_name": "PRKACA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61163-1", "protein_name": "Alpha-centractin", "gene_name": "ACTR1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63167-1", "protein_name": "Dynein light chain 1, cytoplasmic", "gene_name": "DYNLL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99996-2", "protein_name": "A-kinase anchor protein 9", "gene_name": "AKAP9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49674-1", "protein_name": "Casein kinase I isoform epsilon", "gene_name": "CSNK1E", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15691-1", "protein_name": "Microtubule-associated protein RP/EB family member 1", "gene_name": "MAPRE1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TCU4-1", "protein_name": "Centrosome-associated protein ALMS1", "gene_name": "ALMS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96MT8-1", "protein_name": "Centrosomal protein of 63 kDa", "gene_name": "CEP63", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07900-1", "protein_name": "Heat shock protein HSP 90-alpha", "gene_name": "HSP90AA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96CS2-1", "protein_name": "HAUS augmin-like complex subunit 1", "gene_name": "HAUS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31323-1", "protein_name": "cAMP-dependent protein kinase type II-beta regulatory subunit", "gene_name": "PRKAR2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13561-1", "protein_name": "Dynactin subunit 2", "gene_name": "DCTN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75330-1", "protein_name": "Hyaluronan mediated motility receptor", "gene_name": "HMMR", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75665-1", "protein_name": "Centriole and centriolar satellite protein OFD1", "gene_name": "OFD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23258-1", "protein_name": "Tubulin gamma-1 chain", "gene_name": "TUBG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NVX0-1", "protein_name": "HAUS augmin-like complex subunit 2", "gene_name": "HAUS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z4H7-1", "protein_name": "HAUS augmin-like complex subunit 6", "gene_name": "HAUS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H6D7-1", "protein_name": "HAUS augmin-like complex subunit 4", "gene_name": "HAUS4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BT25-1", "protein_name": "HAUS augmin-like complex subunit 8", "gene_name": "HAUS8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68371-1", "protein_name": "Tubulin beta-4B chain", "gene_name": "TUBB4B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P209-1", "protein_name": "Centrosomal protein of 72 kDa", "gene_name": "CEP72", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75935-1", "protein_name": "Dynactin subunit 3", "gene_name": "DCTN3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z460-1", "protein_name": "CLIP-associating protein 1", "gene_name": "CLASP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P48730-1", "protein_name": "Casein kinase I isoform delta", "gene_name": "CSNK1D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14204-1", "protein_name": "Cytoplasmic dynein 1 heavy chain 1", "gene_name": "DYNC1H1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43805-1", "protein_name": "Microtubule nucleation factor SSNA1", "gene_name": "SSNA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94927-1", "protein_name": "HAUS augmin-like complex subunit 5", "gene_name": "HAUS5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NHV4-1", "protein_name": "Protein NEDD1", "gene_name": "NEDD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62258-1", "protein_name": "14-3-3 protein epsilon", "gene_name": "YWHAE", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61981-1", "protein_name": "14-3-3 protein gamma", "gene_name": "YWHAG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30153-1", "protein_name": "Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform", "gene_name": "PPP2R1A", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q86SQ7", "url": "https://www.uniprot.org/uniprotkb/Q86SQ7" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.15498487", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 71 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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"count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Receptor for hyaluronan-mediated motility correlates with centrosome abnormalities in multiple myeloma and maintains mitotic integrity.", "journal": "Cancer research", "date": "2005", "authors": "Maxwell CA, Keats JJ, Belch AR, Pilarski LM, Reiman T", "reference": { "type": "PubMed", "id": "15705883", "url": "https://pubmed.ncbi.nlm.nih.gov/15705883" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q86SQ7-1", "protein_name": "Serologically defined colon cancer antigen 8", "gene_name": "SDCCAG8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TAP6-1", "protein_name": "Centrosomal protein of 76 kDa", "gene_name": "CEP76", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51955-1", "protein_name": "Serine/threonine-protein kinase Nek2", "gene_name": "NEK2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14965-1", "protein_name": "Aurora kinase A", "gene_name": "AURKA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15154-1", "protein_name": "Pericentriolar material 1 protein", "gene_name": "PCM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5BJF6-1", "protein_name": "Outer dense fiber protein 2", "gene_name": "ODF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14008-1", "protein_name": "Cytoskeleton-associated protein 5", "gene_name": "CKAP5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68366-1", "protein_name": "Tubulin alpha-4A chain", "gene_name": "TUBA4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95684-1", "protein_name": "Centrosomal protein 43", "gene_name": "CEP43", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TEP8-3", "protein_name": "Centrosomal protein of 192 kDa", "gene_name": "CEP192", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71U36-1", "protein_name": "Tubulin alpha-1A chain", "gene_name": "TUBA1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BV73-1", "protein_name": "Centrosome-associated protein CEP250", "gene_name": "CEP250", "tax_name": "Human" }, { "uniprot_canonical_ac": "P43034-1", "protein_name": "Platelet-activating factor acetylhydrolase IB subunit beta", "gene_name": "PAFAH1B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NXR1-2", "protein_name": "Nuclear distribution protein nudE homolog 1", "gene_name": "NDE1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15078-1", "protein_name": "Centrosomal protein of 290 kDa", "gene_name": "CEP290", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53350-1", "protein_name": "Serine/threonine-protein kinase PLK1", "gene_name": "PLK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9ULW0-1", "protein_name": "Targeting protein for Xklp2", "gene_name": "TPX2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95613-1", "protein_name": "Pericentrin", "gene_name": "PCNT", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5JTW2-1", "protein_name": "Centrosomal protein of 78 kDa", "gene_name": "CEP78", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BYV8-1", "protein_name": "Centrosomal protein of 41 kDa", "gene_name": "CEP41", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96SN8-1", "protein_name": "CDK5 regulatory subunit-associated protein 2", "gene_name": "CDK5RAP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99871-1", "protein_name": "HAUS augmin-like complex subunit 7", "gene_name": "HAUS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06493-1", "protein_name": "Cyclin-dependent kinase 1", "gene_name": "CDK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2I6-1", "protein_name": "Ninein-like protein", "gene_name": "NINL", "tax_name": "Human" }, { "uniprot_canonical_ac": "A8K8P3-1", "protein_name": "Protein SFI1 homolog", "gene_name": "SFI1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPV0-1", "protein_name": "Centrosomal protein of 164 kDa", "gene_name": "CEP164", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43303-1", "protein_name": "Centriolar coiled-coil protein of 110 kDa", "gene_name": "CCP110", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94986-4", "protein_name": "Centrosomal protein of 152 kDa", "gene_name": "CEP152", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41208-1", "protein_name": "Centrin-2", "gene_name": "CETN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q66GS9-1", "protein_name": "Centrosomal protein of 135 kDa", "gene_name": "CEP135", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86XR8-1", "protein_name": "Centrosomal protein of 57 kDa", "gene_name": "CEP57", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPN4-1", "protein_name": "Centrosomal protein of 131 kDa", "gene_name": "CEP131", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z7A1-1", "protein_name": "Centriolin", "gene_name": "CNTRL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13409-1", "protein_name": "Cytoplasmic dynein 1 intermediate chain 2", "gene_name": "DYNC1I2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07437-1", "protein_name": "Tubulin beta chain", "gene_name": "TUBB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q68CZ6-1", "protein_name": "HAUS augmin-like complex subunit 3", "gene_name": "HAUS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04350-1", "protein_name": "Tubulin beta-4A chain", "gene_name": "TUBB4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00444-1", "protein_name": "Serine/threonine-protein kinase PLK4", "gene_name": "PLK4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HC77-1", "protein_name": "Centrosomal P4.1-associated protein", "gene_name": "CPAP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NHQ1-1", "protein_name": "Centrosomal protein of 70 kDa", "gene_name": "CEP70", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17612-1", "protein_name": "cAMP-dependent protein kinase catalytic subunit alpha", "gene_name": "PRKACA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61163-1", "protein_name": "Alpha-centractin", "gene_name": "ACTR1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63167-1", "protein_name": "Dynein light chain 1, cytoplasmic", "gene_name": "DYNLL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99996-2", "protein_name": "A-kinase anchor protein 9", "gene_name": "AKAP9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49674-1", "protein_name": "Casein kinase I isoform epsilon", "gene_name": "CSNK1E", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15691-1", "protein_name": "Microtubule-associated protein RP/EB family member 1", "gene_name": "MAPRE1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TCU4-1", "protein_name": "Centrosome-associated protein ALMS1", "gene_name": "ALMS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96MT8-1", "protein_name": "Centrosomal protein of 63 kDa", "gene_name": "CEP63", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07900-1", "protein_name": "Heat shock protein HSP 90-alpha", "gene_name": "HSP90AA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96CS2-1", "protein_name": "HAUS augmin-like complex subunit 1", "gene_name": "HAUS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31323-1", "protein_name": "cAMP-dependent protein kinase type II-beta regulatory subunit", "gene_name": "PRKAR2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13561-1", "protein_name": "Dynactin subunit 2", "gene_name": "DCTN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75330-1", "protein_name": "Hyaluronan mediated motility receptor", "gene_name": "HMMR", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75665-1", "protein_name": "Centriole and centriolar satellite protein OFD1", "gene_name": "OFD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23258-1", "protein_name": "Tubulin gamma-1 chain", "gene_name": "TUBG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NVX0-1", "protein_name": "HAUS augmin-like complex subunit 2", "gene_name": "HAUS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z4H7-1", "protein_name": "HAUS augmin-like complex subunit 6", "gene_name": "HAUS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H6D7-1", "protein_name": "HAUS augmin-like complex subunit 4", "gene_name": "HAUS4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BT25-1", "protein_name": "HAUS augmin-like complex subunit 8", "gene_name": "HAUS8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68371-1", "protein_name": "Tubulin beta-4B chain", "gene_name": "TUBB4B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P209-1", "protein_name": "Centrosomal protein of 72 kDa", "gene_name": "CEP72", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75935-1", "protein_name": "Dynactin subunit 3", "gene_name": "DCTN3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z460-1", "protein_name": "CLIP-associating protein 1", "gene_name": "CLASP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P48730-1", "protein_name": "Casein kinase I isoform delta", "gene_name": "CSNK1D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14204-1", "protein_name": "Cytoplasmic dynein 1 heavy chain 1", "gene_name": "DYNC1H1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43805-1", "protein_name": "Microtubule nucleation factor SSNA1", "gene_name": "SSNA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94927-1", "protein_name": "HAUS augmin-like complex subunit 5", "gene_name": "HAUS5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NHV4-1", "protein_name": "Protein NEDD1", "gene_name": "NEDD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62258-1", "protein_name": "14-3-3 protein epsilon", "gene_name": "YWHAE", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61981-1", "protein_name": "14-3-3 protein gamma", "gene_name": "YWHAG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30153-1", "protein_name": "Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform", "gene_name": "PPP2R1A", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q86SQ7", "url": "https://www.uniprot.org/uniprotkb/Q86SQ7" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.15705883", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 71 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Tectonic, a novel regulator of the Hedgehog pathway required for both activation and inhibition.", "journal": "Genes & development", "date": "2006", "authors": "Reiter JF, Skarnes WC", "reference": { "type": "PubMed", "id": "16357211", "url": "https://pubmed.ncbi.nlm.nih.gov/16357211" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q86SQ7-1", "protein_name": "Serologically defined colon cancer antigen 8", "gene_name": "SDCCAG8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TAP6-1", "protein_name": "Centrosomal protein of 76 kDa", "gene_name": "CEP76", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51955-1", "protein_name": "Serine/threonine-protein kinase Nek2", "gene_name": "NEK2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15154-1", "protein_name": "Pericentriolar material 1 protein", "gene_name": "PCM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5BJF6-1", "protein_name": "Outer dense fiber protein 2", "gene_name": "ODF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14008-1", "protein_name": "Cytoskeleton-associated protein 5", "gene_name": "CKAP5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96GX1-1", "protein_name": "Tectonic-2", "gene_name": "TCTN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68366-1", "protein_name": "Tubulin alpha-4A chain", "gene_name": "TUBA4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95684-1", "protein_name": "Centrosomal protein 43", "gene_name": "CEP43", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TEP8-3", "protein_name": "Centrosomal protein of 192 kDa", "gene_name": "CEP192", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71U36-1", "protein_name": "Tubulin alpha-1A chain", "gene_name": "TUBA1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62491-1", "protein_name": "Ras-related protein Rab-11A", "gene_name": "RAB11A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BV73-1", "protein_name": "Centrosome-associated protein CEP250", "gene_name": "CEP250", "tax_name": "Human" }, { "uniprot_canonical_ac": "P43034-1", "protein_name": "Platelet-activating factor acetylhydrolase IB subunit beta", "gene_name": "PAFAH1B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6IQ55-1", "protein_name": "Tau-tubulin kinase 2", "gene_name": "TTBK2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NXR1-2", "protein_name": "Nuclear distribution protein nudE homolog 1", "gene_name": "NDE1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96NL6-1", "protein_name": "Sodium channel and clathrin linker 1", "gene_name": "SCLT1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15078-1", "protein_name": "Centrosomal protein of 290 kDa", "gene_name": "CEP290", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53350-1", "protein_name": "Serine/threonine-protein kinase PLK1", "gene_name": "PLK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15051-1", "protein_name": "IQ calmodulin-binding motif-containing protein 1", "gene_name": "IQCB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95613-1", "protein_name": "Pericentrin", "gene_name": "PCNT", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5JTW2-1", "protein_name": "Centrosomal protein of 78 kDa", "gene_name": "CEP78", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BYV8-1", "protein_name": "Centrosomal protein of 41 kDa", "gene_name": "CEP41", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96SN8-1", "protein_name": "CDK5 regulatory subunit-associated protein 2", "gene_name": "CDK5RAP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99871-1", "protein_name": "HAUS augmin-like complex subunit 7", "gene_name": "HAUS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06493-1", "protein_name": "Cyclin-dependent kinase 1", "gene_name": "CDK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P2K1-4", "protein_name": "Coiled-coil and C2 domain-containing protein 2A", "gene_name": "CC2D2A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2I6-1", "protein_name": "Ninein-like protein", "gene_name": "NINL", "tax_name": "Human" }, { "uniprot_canonical_ac": "A8K8P3-1", "protein_name": "Protein SFI1 homolog", "gene_name": "SFI1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPV0-1", "protein_name": "Centrosomal protein of 164 kDa", "gene_name": "CEP164", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43303-1", "protein_name": "Centriolar coiled-coil protein of 110 kDa", "gene_name": "CCP110", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94986-4", "protein_name": "Centrosomal protein of 152 kDa", "gene_name": "CEP152", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41208-1", "protein_name": "Centrin-2", "gene_name": "CETN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5TB80-1", "protein_name": "Centrosomal protein of 162 kDa", "gene_name": "CEP162", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q66GS9-1", "protein_name": "Centrosomal protein of 135 kDa", "gene_name": "CEP135", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86XR8-1", "protein_name": "Centrosomal protein of 57 kDa", "gene_name": "CEP57", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96ST8-1", "protein_name": "Centrosomal protein of 89 kDa", "gene_name": "CEP89", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y592-1", "protein_name": "Centrosomal protein of 83 kDa", "gene_name": "CEP83", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPN4-1", "protein_name": "Centrosomal protein of 131 kDa", "gene_name": "CEP131", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z7A1-1", "protein_name": "Centriolin", "gene_name": "CNTRL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13409-1", "protein_name": "Cytoplasmic dynein 1 intermediate chain 2", "gene_name": "DYNC1I2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07437-1", "protein_name": "Tubulin beta chain", "gene_name": "TUBB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2MV58-1", "protein_name": "Tectonic-1", "gene_name": "TCTN1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q68CZ6-1", "protein_name": "HAUS augmin-like complex subunit 3", "gene_name": "HAUS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q68CZ1-1", "protein_name": "Protein fantom", "gene_name": "RPGRIP1L", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04350-1", "protein_name": "Tubulin beta-4A chain", "gene_name": "TUBB4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61006-1", "protein_name": "Ras-related protein Rab-8A", "gene_name": "RAB8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75161-1", "protein_name": "Nephrocystin-4", "gene_name": "NPHP4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8IW35-1", "protein_name": "Centrosomal protein of 97 kDa", "gene_name": "CEP97", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00444-1", "protein_name": "Serine/threonine-protein kinase PLK4", "gene_name": "PLK4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HC77-1", "protein_name": "Centrosomal P4.1-associated protein", "gene_name": "CPAP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96QF0-1", "protein_name": "Rab-3A-interacting protein", "gene_name": "RAB3IP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NHQ1-1", "protein_name": "Centrosomal protein of 70 kDa", "gene_name": "CEP70", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17612-1", "protein_name": "cAMP-dependent protein kinase catalytic subunit alpha", "gene_name": "PRKACA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61163-1", "protein_name": "Alpha-centractin", "gene_name": "ACTR1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63167-1", "protein_name": "Dynein light chain 1, cytoplasmic", "gene_name": "DYNLL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99996-2", "protein_name": "A-kinase anchor protein 9", "gene_name": "AKAP9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49674-1", "protein_name": "Casein kinase I isoform epsilon", "gene_name": "CSNK1E", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15691-1", "protein_name": "Microtubule-associated protein RP/EB family member 1", "gene_name": "MAPRE1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TCU4-1", "protein_name": "Centrosome-associated protein ALMS1", "gene_name": "ALMS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96MT8-1", "protein_name": "Centrosomal protein of 63 kDa", "gene_name": "CEP63", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07900-1", "protein_name": "Heat shock protein HSP 90-alpha", "gene_name": "HSP90AA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96CS2-1", "protein_name": "HAUS augmin-like complex subunit 1", "gene_name": "HAUS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O15259-1", "protein_name": "Nephrocystin-1", "gene_name": "NPHP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31323-1", "protein_name": "cAMP-dependent protein kinase type II-beta regulatory subunit", "gene_name": "PRKAR2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8N157-1", "protein_name": "Jouberin", "gene_name": "AHI1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BPU9-1", "protein_name": "B9 domain-containing protein 2", "gene_name": "B9D2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPM9-1", "protein_name": "B9 domain-containing protein 1", "gene_name": "B9D1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13561-1", "protein_name": "Dynactin subunit 2", "gene_name": "DCTN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75665-1", "protein_name": "Centriole and centriolar satellite protein OFD1", "gene_name": "OFD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23258-1", "protein_name": "Tubulin gamma-1 chain", "gene_name": "TUBG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q4AC94-5", "protein_name": "C2 domain-containing protein 3", "gene_name": "C2CD3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q2MV57-1", "protein_name": "Tectonic-2", "gene_name": "Tctn2", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8BZ64-1", "protein_name": "Tectonic-1", "gene_name": "Tctn1", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R2Q6-1", "protein_name": "Tectonic-3", "gene_name": "Tctn3", "tax_name": "Mouse" }, { "uniprot_canonical_ac": "Q9NVX0-1", "protein_name": "HAUS augmin-like complex subunit 2", "gene_name": "HAUS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z4H7-1", "protein_name": "HAUS augmin-like complex subunit 6", "gene_name": "HAUS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15019-1", "protein_name": "Septin-2", "gene_name": "SEPTIN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H6D7-1", "protein_name": "HAUS augmin-like complex subunit 4", "gene_name": "HAUS4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BT25-1", "protein_name": "HAUS augmin-like complex subunit 8", "gene_name": "HAUS8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68371-1", "protein_name": "Tubulin beta-4B chain", "gene_name": "TUBB4B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P209-1", "protein_name": "Centrosomal protein of 72 kDa", "gene_name": "CEP72", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75935-1", "protein_name": "Dynactin subunit 3", "gene_name": "DCTN3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z460-1", "protein_name": "CLIP-associating protein 1", "gene_name": "CLASP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5T7B8-1", "protein_name": "Kinesin-like protein KIF24", "gene_name": "KIF24", "tax_name": "Human" }, { "uniprot_canonical_ac": "P48730-1", "protein_name": "Casein kinase I isoform delta", "gene_name": "CSNK1D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14204-1", "protein_name": "Cytoplasmic dynein 1 heavy chain 1", "gene_name": "DYNC1H1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43805-1", "protein_name": "Microtubule nucleation factor SSNA1", "gene_name": "SSNA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TES7-1", "protein_name": "Fas-binding factor 1", "gene_name": "FBF1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94927-1", "protein_name": "HAUS augmin-like complex subunit 5", "gene_name": "HAUS5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NHV4-1", "protein_name": "Protein NEDD1", "gene_name": "NEDD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5HYA8-1", "protein_name": "Meckelin", "gene_name": "TMEM67", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NXB0-1", "protein_name": "Tectonic-like complex member MKS1", "gene_name": "MKS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6NUS6-1", "protein_name": "Tectonic-3", "gene_name": "TCTN3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P0N5-1", "protein_name": "Transmembrane protein 216", "gene_name": "TMEM216", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62258-1", "protein_name": "14-3-3 protein epsilon", "gene_name": "YWHAE", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61981-1", "protein_name": "14-3-3 protein gamma", "gene_name": "YWHAG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30153-1", "protein_name": "Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform", "gene_name": "PPP2R1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96L34-1", "protein_name": 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"total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": 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"tax_name": "Human" }, { "uniprot_canonical_ac": "O94986-4", "protein_name": "Centrosomal protein of 152 kDa", "gene_name": "CEP152", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41208-1", "protein_name": "Centrin-2", "gene_name": "CETN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q66GS9-1", "protein_name": "Centrosomal protein of 135 kDa", "gene_name": "CEP135", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86XR8-1", "protein_name": "Centrosomal protein of 57 kDa", "gene_name": "CEP57", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPN4-1", "protein_name": "Centrosomal protein of 131 kDa", "gene_name": "CEP131", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z7A1-1", "protein_name": "Centriolin", "gene_name": "CNTRL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13409-1", "protein_name": "Cytoplasmic dynein 1 intermediate chain 2", "gene_name": "DYNC1I2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07437-1", "protein_name": "Tubulin beta 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"uniprot_canonical_ac": "P17612-1", "protein_name": "cAMP-dependent protein kinase catalytic subunit alpha", "gene_name": "PRKACA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61163-1", "protein_name": "Alpha-centractin", "gene_name": "ACTR1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63167-1", "protein_name": "Dynein light chain 1, cytoplasmic", "gene_name": "DYNLL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99996-2", "protein_name": "A-kinase anchor protein 9", "gene_name": "AKAP9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49674-1", "protein_name": "Casein kinase I isoform epsilon", "gene_name": "CSNK1E", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15691-1", "protein_name": "Microtubule-associated protein RP/EB family member 1", "gene_name": "MAPRE1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TCU4-1", "protein_name": "Centrosome-associated protein ALMS1", "gene_name": "ALMS1", "tax_name": "Human" }, { "uniprot_canonical_ac": 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"tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P209-1", "protein_name": "Centrosomal protein of 72 kDa", "gene_name": "CEP72", "tax_name": "Human" }, { "uniprot_canonical_ac": "P21127-1", "protein_name": "Cyclin-dependent kinase 11B", "gene_name": "CDK11B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UQ88-1", "protein_name": "Cyclin-dependent kinase 11A", "gene_name": "CDK11A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75935-1", "protein_name": "Dynactin subunit 3", "gene_name": "DCTN3", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z460-1", "protein_name": "CLIP-associating protein 1", "gene_name": "CLASP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P48730-1", "protein_name": "Casein kinase I isoform delta", "gene_name": "CSNK1D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14204-1", "protein_name": "Cytoplasmic dynein 1 heavy chain 1", "gene_name": "DYNC1H1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43805-1", "protein_name": 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"tax_name": "Human" }, { "uniprot_canonical_ac": "P61981-1", "protein_name": "14-3-3 protein gamma", "gene_name": "YWHAG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30153-1", "protein_name": "Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform", "gene_name": "PPP2R1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y5B8-1", "protein_name": "Nucleoside diphosphate kinase 7", "gene_name": "NME7", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q86SQ7", "url": "https://www.uniprot.org/uniprotkb/Q86SQ7" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.16462731", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 80 } ], "sort_fields": [ 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"o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] } ] }, { "title": "Mitotic activation of the kinase Aurora-A requires its binding partner Bora.", "journal": "Developmental cell", "date": "2006", "authors": "Hutterer A, Berdnik D, Wirtz-Peitz F, Zigman M, Schleiffer A, Knoblich JA", "reference": { "type": "PubMed", "id": "16890155", "url": "https://pubmed.ncbi.nlm.nih.gov/16890155" }, "referenced_glycans": [], "referenced_proteins": [ { "uniprot_canonical_ac": "Q86SQ7-1", "protein_name": "Serologically defined colon cancer antigen 8", "gene_name": "SDCCAG8", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TAP6-1", "protein_name": "Centrosomal protein of 76 kDa", "gene_name": "CEP76", "tax_name": "Human" }, { "uniprot_canonical_ac": "P51955-1", "protein_name": "Serine/threonine-protein kinase Nek2", "gene_name": "NEK2", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14965-1", "protein_name": "Aurora kinase A", "gene_name": "AURKA", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15154-1", "protein_name": "Pericentriolar material 1 protein", "gene_name": "PCM1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13616-1", "protein_name": "Cullin-1", "gene_name": "CUL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5BJF6-1", "protein_name": "Outer dense fiber protein 2", "gene_name": "ODF2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14008-1", "protein_name": "Cytoskeleton-associated protein 5", "gene_name": "CKAP5", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68366-1", "protein_name": "Tubulin alpha-4A chain", "gene_name": "TUBA4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95684-1", "protein_name": "Centrosomal protein 43", "gene_name": "CEP43", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TEP8-3", "protein_name": "Centrosomal protein of 192 kDa", "gene_name": "CEP192", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q71U36-1", "protein_name": "Tubulin alpha-1A chain", "gene_name": "TUBA1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BV73-1", "protein_name": "Centrosome-associated protein CEP250", "gene_name": "CEP250", "tax_name": "Human" }, { "uniprot_canonical_ac": "P43034-1", "protein_name": "Platelet-activating factor acetylhydrolase IB subunit beta", "gene_name": "PAFAH1B1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NXR1-2", "protein_name": "Nuclear distribution protein nudE homolog 1", "gene_name": "NDE1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9VVR2-1", "protein_name": "Protein aurora borealis", "gene_name": "bora", "tax_name": "Fruit fly" }, { "uniprot_canonical_ac": "O15078-1", "protein_name": "Centrosomal protein of 290 kDa", "gene_name": "CEP290", "tax_name": "Human" }, { "uniprot_canonical_ac": "P53350-1", "protein_name": "Serine/threonine-protein kinase PLK1", "gene_name": "PLK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95613-1", "protein_name": "Pericentrin", "gene_name": "PCNT", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q5JTW2-1", "protein_name": "Centrosomal protein of 78 kDa", "gene_name": "CEP78", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BYV8-1", "protein_name": "Centrosomal protein of 41 kDa", "gene_name": "CEP41", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96SN8-1", "protein_name": "CDK5 regulatory subunit-associated protein 2", "gene_name": "CDK5RAP2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99871-1", "protein_name": "HAUS augmin-like complex subunit 7", "gene_name": "HAUS7", "tax_name": "Human" }, { "uniprot_canonical_ac": "P06493-1", "protein_name": "Cyclin-dependent kinase 1", "gene_name": "CDK1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y2I6-1", "protein_name": "Ninein-like protein", "gene_name": "NINL", "tax_name": "Human" }, { "uniprot_canonical_ac": "A8K8P3-1", "protein_name": "Protein SFI1 homolog", "gene_name": "SFI1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPV0-1", "protein_name": "Centrosomal protein of 164 kDa", "gene_name": "CEP164", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43303-1", "protein_name": "Centriolar coiled-coil protein of 110 kDa", "gene_name": "CCP110", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94986-4", "protein_name": "Centrosomal protein of 152 kDa", "gene_name": "CEP152", "tax_name": "Human" }, { "uniprot_canonical_ac": "P41208-1", "protein_name": "Centrin-2", "gene_name": "CETN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q66GS9-1", "protein_name": "Centrosomal protein of 135 kDa", "gene_name": "CEP135", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q86XR8-1", "protein_name": "Centrosomal protein of 57 kDa", "gene_name": "CEP57", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UPN4-1", "protein_name": "Centrosomal protein of 131 kDa", "gene_name": "CEP131", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z7A1-1", "protein_name": "Centriolin", "gene_name": "CNTRL", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13409-1", "protein_name": "Cytoplasmic dynein 1 intermediate chain 2", "gene_name": "DYNC1I2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07437-1", "protein_name": "Tubulin beta chain", "gene_name": "TUBB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q68CZ6-1", "protein_name": "HAUS augmin-like complex subunit 3", "gene_name": "HAUS3", "tax_name": "Human" }, { "uniprot_canonical_ac": "P04350-1", "protein_name": "Tubulin beta-4A chain", "gene_name": "TUBB4A", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61006-1", "protein_name": "Ras-related protein Rab-8A", "gene_name": "RAB8A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96CV9-1", "protein_name": "Optineurin", "gene_name": "OPTN", "tax_name": "Human" }, { "uniprot_canonical_ac": "O00444-1", "protein_name": "Serine/threonine-protein kinase PLK4", "gene_name": "PLK4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9HC77-1", "protein_name": "Centrosomal P4.1-associated protein", "gene_name": "CPAP", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NHQ1-1", "protein_name": "Centrosomal protein of 70 kDa", "gene_name": "CEP70", "tax_name": "Human" }, { "uniprot_canonical_ac": "P17612-1", "protein_name": "cAMP-dependent protein kinase catalytic subunit alpha", "gene_name": "PRKACA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61163-1", "protein_name": "Alpha-centractin", "gene_name": "ACTR1A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96IF1-1", "protein_name": "LIM domain-containing protein ajuba", "gene_name": "AJUBA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63167-1", "protein_name": "Dynein light chain 1, cytoplasmic", "gene_name": "DYNLL1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q99996-2", "protein_name": "A-kinase anchor protein 9", "gene_name": "AKAP9", "tax_name": "Human" }, { "uniprot_canonical_ac": "P49674-1", "protein_name": "Casein kinase I isoform epsilon", "gene_name": "CSNK1E", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q15691-1", "protein_name": "Microtubule-associated protein RP/EB family member 1", "gene_name": "MAPRE1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62140-1", "protein_name": "Serine/threonine-protein phosphatase PP1-beta catalytic subunit", "gene_name": "PPP1CB", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8TCU4-1", "protein_name": "Centrosome-associated protein ALMS1", "gene_name": "ALMS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96MT8-1", "protein_name": "Centrosomal protein of 63 kDa", "gene_name": "CEP63", "tax_name": "Human" }, { "uniprot_canonical_ac": "P07900-1", "protein_name": "Heat shock protein HSP 90-alpha", "gene_name": "HSP90AA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q96CS2-1", "protein_name": "HAUS augmin-like complex subunit 1", "gene_name": "HAUS1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9Y297-1", "protein_name": "F-box/WD repeat-containing protein 1A", "gene_name": "BTRC", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9UKB1-1", "protein_name": "F-box/WD repeat-containing protein 11", "gene_name": "FBXW11", "tax_name": "Human" }, { "uniprot_canonical_ac": "P31323-1", "protein_name": "cAMP-dependent protein kinase type II-beta regulatory subunit", "gene_name": "PRKAR2B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q13561-1", "protein_name": "Dynactin subunit 2", "gene_name": "DCTN2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62979-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "RPS27A", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75665-1", "protein_name": "Centriole and centriolar satellite protein OFD1", "gene_name": "OFD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P23258-1", "protein_name": "Tubulin gamma-1 chain", "gene_name": "TUBG1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9NVX0-1", "protein_name": "HAUS augmin-like complex subunit 2", "gene_name": "HAUS2", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z4H7-1", "protein_name": "HAUS augmin-like complex subunit 6", "gene_name": "HAUS6", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9H6D7-1", "protein_name": "HAUS augmin-like complex subunit 4", "gene_name": "HAUS4", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9BT25-1", "protein_name": "HAUS augmin-like complex subunit 8", "gene_name": "HAUS8", "tax_name": "Human" }, { "uniprot_canonical_ac": "P68371-1", "protein_name": "Tubulin beta-4B chain", "gene_name": "TUBB4B", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q9P209-1", "protein_name": "Centrosomal protein of 72 kDa", "gene_name": "CEP72", "tax_name": "Human" }, { "uniprot_canonical_ac": "O95067-1", "protein_name": "G2/mitotic-specific cyclin-B2", "gene_name": "CCNB2", "tax_name": "Human" }, { "uniprot_canonical_ac": "P14635-1", "protein_name": "G2/mitotic-specific cyclin-B1", "gene_name": "CCNB1", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q6PGQ7-1", "protein_name": "Protein aurora borealis", "gene_name": "BORA", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG47-1", "protein_name": "Polyubiquitin-B", "gene_name": "UBB", "tax_name": "Human" }, { "uniprot_canonical_ac": "O75935-1", "protein_name": "Dynactin subunit 3", "gene_name": "DCTN3", "tax_name": "Human" }, { "uniprot_canonical_ac": "O14974-1", "protein_name": "Protein phosphatase 1 regulatory subunit 12A", "gene_name": "PPP1R12A", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q7Z460-1", "protein_name": "CLIP-associating protein 1", "gene_name": "CLASP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62987-1", "protein_name": "Ubiquitin-ribosomal protein eL40 fusion protein", "gene_name": "UBA52", "tax_name": "Human" }, { "uniprot_canonical_ac": "P48730-1", "protein_name": "Casein kinase I isoform delta", "gene_name": "CSNK1D", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q14204-1", "protein_name": "Cytoplasmic dynein 1 heavy chain 1", "gene_name": "DYNC1H1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O43805-1", "protein_name": "Microtubule nucleation factor SSNA1", "gene_name": "SSNA1", "tax_name": "Human" }, { "uniprot_canonical_ac": "O94927-1", "protein_name": "HAUS augmin-like complex subunit 5", "gene_name": "HAUS5", "tax_name": "Human" }, { "uniprot_canonical_ac": "Q8NHV4-1", "protein_name": "Protein NEDD1", "gene_name": "NEDD1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P62258-1", "protein_name": "14-3-3 protein epsilon", "gene_name": "YWHAE", "tax_name": "Human" }, { "uniprot_canonical_ac": "P61981-1", "protein_name": "14-3-3 protein gamma", "gene_name": "YWHAG", "tax_name": "Human" }, { "uniprot_canonical_ac": "P0CG48-1", "protein_name": "Polyubiquitin-C", "gene_name": "UBC", "tax_name": "Human" }, { "uniprot_canonical_ac": "P63208-1", "protein_name": "S-phase kinase-associated protein 1", "gene_name": "SKP1", "tax_name": "Human" }, { "uniprot_canonical_ac": "P30153-1", "protein_name": "Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform", "gene_name": "PPP2R1A", "tax_name": "Human" } ], "species": [ { "name": "Homo sapiens", "taxid": 9606, "evidence": [ { "database": "UniProtKB", "id": "Q86SQ7", "url": "https://www.uniprot.org/uniprotkb/Q86SQ7" } ], "common_name": "Human", "glygen_name": "Human", "reference_species": "Homo sapiens [9606]" } ], "record_id": "pubmed.16890155", "abstract": "", "glycosylation": [], "mutagenesis": [], "snv": [], "phosphorylation": [], "glycation": [], "section_stats": [ { "table_id": "referenced_proteins", "table_stats": [ { "field": "total", "count": 86 } ], "sort_fields": [ "uniprot_canonical_ac", "protein_name", "gene_name", "tax_name" ] }, { "table_id": "referenced_glycans", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { 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